Citrus Sinensis ID: 002273
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | 2.2.26 [Sep-21-2011] | |||||||
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 0.970 | 0.982 | 0.817 | 0.0 | |
| Q96301 | 914 | Probable UDP-N-acetylgluc | yes | no | 0.941 | 0.972 | 0.816 | 0.0 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 0.972 | 0.986 | 0.802 | 0.0 | |
| Q8LP10 | 918 | Probable UDP-N-acetylgluc | N/A | no | 0.923 | 0.949 | 0.777 | 0.0 | |
| O82422 | 944 | Probable UDP-N-acetylgluc | N/A | no | 0.869 | 0.869 | 0.817 | 0.0 | |
| Q6YZI0 | 927 | Probable UDP-N-acetylgluc | yes | no | 0.899 | 0.915 | 0.785 | 0.0 | |
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.780 | 0.754 | 0.277 | 1e-79 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.594 | 0.541 | 0.271 | 1e-55 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.625 | 0.564 | 0.261 | 2e-54 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.629 | 0.567 | 0.260 | 2e-54 |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function desciption |
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Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/950 (81%), Positives = 840/950 (88%), Gaps = 34/950 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 277
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC
Sbjct: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGVIYKDRDNLDKAVECYQMAL+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 338 NNLGVIYKDRDNLDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIA 397
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEAYNNLGVLYRDAG+ISLAI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL
Sbjct: 398 NPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKL 457
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
+EAHRDWG RFMRLY QY SWDN+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY N
Sbjct: 458 YEAHRDWGWRFMRLYQQYNSWDNSKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYAN 517
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
YKVV+YSAVVKADAKT RFR+KV+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHT
Sbjct: 518 YKVVIYSAVVKADAKTNRFRDKVLKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHT 577
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS+ADPP TKQKHVEEL+RLP+ F
Sbjct: 578 ANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSF 637
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCYTPSPEAGPV P PALTNGF+TFGSFNNLAKITPKVLQVWARILCAVP+SRL+VKCKP
Sbjct: 638 LCYTPSPEAGPVSPAPALTNGFVTFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKP 697
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
F CDSVR RFLS LEQLGLE RVDL+PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE
Sbjct: 698 FGCDSVRQRFLSILEQLGLEPQRVDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 757
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SLYMGVPCVTM GSVHAHNVGVSLL VGL+ L+A+NEDEYV+LA+QLASDVT+L+NLRM
Sbjct: 758 SLYMGVPCVTMGGSVHAHNVGVSLLKTVGLRKLVARNEDEYVELAIQLASDVTSLSNLRM 817
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRME-------MLQQQVVSE 893
SLR+LM+KSP+CDG F LESTYR+MW RYC GDVPSL+RME L + VV E
Sbjct: 818 SLRELMAKSPLCDGAQFTQNLESTYRSMWRRYCDGDVPSLRRMELLQQQQQTLAELVVPE 877
Query: 894 E-PSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQLNQ 942
E P E T+I +K+ G + NGF + + N S IEENGVQLNQ
Sbjct: 878 ESPVSPIEKTRISASKD---GPIKENGFTVSPALVYNSSTIEENGVQLNQ 924
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1560 bits (4040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/921 (81%), Positives = 816/921 (88%), Gaps = 32/921 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M +E D RER PV +NGF G +S ++G + + K +G D LSYANILR+
Sbjct: 1 MVGLEDDTE--RERSPVVENGFSNGSRSSSSSAG---VLSPSRKVTQGNDTLSYANILRA 55
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE +LEKDS NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA T
Sbjct: 56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALT 115
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGIL+K+EGRLVEAAESY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 116 HCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 175
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGD
Sbjct: 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGD 235
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LE AI CYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 236 LEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 272
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGD+ QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC
Sbjct: 273 LEGDVTQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 332
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGV+YKDRDNLDKAVECYQMALSIKPNF+QSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 333 NNLGVLYKDRDNLDKAVECYQMALSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILA 392
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEA+NNLGVLYRDAG+I++AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKL
Sbjct: 393 NPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKL 452
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
FEAHRDWG RF RL+ QYTSWDN KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY
Sbjct: 453 FEAHRDWGWRFTRLHPQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTK 512
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
YKVVVYSAVVKADAKT RFR+KV+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHT
Sbjct: 513 YKVVVYSAVVKADAKTYRFRDKVLKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHT 572
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLG MAC+PAPVQVTWIGYPNTTGLPT+DYRITDSLADPP+TKQK VEEL+RLP+CF
Sbjct: 573 ANNKLGTMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCF 632
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP
Sbjct: 633 LCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 692
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
FCCDS+R RFL+TLEQLGLES RVDLLPLIL NHDHMQAYSLMDISLDTFPYAGTTTTCE
Sbjct: 693 FCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCE 752
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SLYMGVPCVTMAGSVHAHNVGVSLLTKVGL HL+AKNEDEYVQL++ LASDVTAL+ LRM
Sbjct: 753 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRM 812
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEP--SKF 898
SLRDLM+ SPVC+G +FA+GLES YRNMW +YCKG+VPSL+RMEMLQ++ V ++P SK
Sbjct: 813 SLRDLMAGSPVCNGPSFAVGLESAYRNMWKKYCKGEVPSLRRMEMLQKE-VHDDPLISKD 871
Query: 899 SEPTKIIFAKEGSPGSVMPNG 919
P+++ E +P S+ NG
Sbjct: 872 LGPSRVSVTGEATP-SLKANG 891
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1547 bits (4006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/949 (80%), Positives = 827/949 (87%), Gaps = 31/949 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E + + +NGFLKG QS G+ GSP + K FE KDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESESLGNNGFLKGGQSSSGSKGSPGRISHVKKIFEDKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VLEKDS ++E+ IGKGICLQMQN GRLAF+SFSEA+K+DPQNACA T
Sbjct: 61 RNKFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSY PAAECLAIVLTD+GTSLKLAGNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 277
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDINQGVAYYKKAL YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC
Sbjct: 278 LEGDINQGVAYYKKALCYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGVIYKDRDNLDKAVECYQ+ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 338 NNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIA 397
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEAYNNLGVLYRDAG+ISLAI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL
Sbjct: 398 NPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGTDDKL 457
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
+EAHRDWG+RFM+LY QYTSWDN+K PERPLVIGYVSPDYFTHSVSYFIEAPL +HDY N
Sbjct: 458 YEAHRDWGRRFMKLYPQYTSWDNSKVPERPLVIGYVSPDYFTHSVSYFIEAPLAHHDYTN 517
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
YKVVVYS+VVKADAKT RFR+KVMKKGG+WRDIYGIDEKKV++M+REDK+DI+VELTGHT
Sbjct: 518 YKVVVYSSVVKADAKTNRFRDKVMKKGGLWRDIYGIDEKKVSSMIREDKVDIMVELTGHT 577
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLG MAC+PAPVQVTWIGYPNTTGLPTIDYRITD++ADPP KQKHVEEL+RLP F
Sbjct: 578 ANNKLGTMACRPAPVQVTWIGYPNTTGLPTIDYRITDAMADPPNAKQKHVEELVRLPNSF 637
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCYTPSPEAGPVCP PAL+NGF+TFGSFNNLAKITPKVL+VWARIL AVP+SRL+VKCKP
Sbjct: 638 LCYTPSPEAGPVCPAPALSNGFVTFGSFNNLAKITPKVLKVWARILSAVPHSRLIVKCKP 697
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
FCCDSVR RFLS LEQLGLE RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE
Sbjct: 698 FCCDSVRQRFLSILEQLGLEPQRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 757
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SLYMGVPCVTM GSVHAHNVGVSLL VGL++L+A+NEDEYV+ A+QLASDVT+L+NLRM
Sbjct: 758 SLYMGVPCVTMGGSVHAHNVGVSLLKTVGLENLVARNEDEYVESAIQLASDVTSLSNLRM 817
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRM------EMLQQQVVSEE 894
SLR+LMSKSP+CDG F +ES YR+MW RYC GDVPSL+RM + + VV EE
Sbjct: 818 SLRELMSKSPLCDGAKFTRNIESIYRSMWRRYCDGDVPSLRRMELLQQQQTQTESVVPEE 877
Query: 895 PSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQLNQH 943
S P++ + GS+ NGF L S EENGVQ N +
Sbjct: 878 SS--VNPSERTITSAPTDGSIKENGFTAVPALALKSSTSEENGVQSNHN 924
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1469 bits (3802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 729/938 (77%), Positives = 790/938 (84%), Gaps = 66/938 (7%)
Query: 21 GFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG 80
G LKG QS + GSPV K EGK+A++YA ILRSRNKFVDALA+YE LEKDS
Sbjct: 12 GLLKGVQSSSDSKGSPVK-----KSLEGKEAITYAKILRSRNKFVDALAIYE--LEKDSK 64
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
NVEAHIGKGICLQ QN G LAFD FSEA++LDP NACA THCGILYKDEGRLVEAA SY
Sbjct: 65 NVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILYKDEGRLVEAA-SYQ 123
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL ADPSYKPAAECLA VL DLGTSLK GNTQ+GIQKYYEA+KIDPHYAPA YNLGVV
Sbjct: 124 KALQADPSYKPAAECLATVLNDLGTSLK--GNTQEGIQKYYEAVKIDPHYAPACYNLGVV 181
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
YSE+MQYD AL CYE+AA E P YA+AYCN G+IYKNRGDL CLAVSPNFEI
Sbjct: 182 YSEMMQYDVALSCYERAATESPTYADAYCNTGIIYKNRGDL---------CLAVSPNFEI 232
Query: 261 AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320
AKNNM IALTDLGTK KLEGDI+QGVAYYKKALYYNW
Sbjct: 233 AKNNMGIALTDLGTKE-----------------------KLEGDIDQGVAYYKKALYYNW 269
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
HY+DAMYNLGVAYGEMLKFDMAI+F ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY
Sbjct: 270 HYSDAMYNLGVAYGEMLKFDMAIIFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 329
Query: 381 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440
Q ALSIKPNFSQSLNNLGVV+TVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+
Sbjct: 330 QKALSIKPNFSQSLNNLGVVFTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGN 389
Query: 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 500
I LAI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DD+L+EAHRDWG RFMRLYSQYTS
Sbjct: 390 IFLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGADDRLYEAHRDWGGRFMRLYSQYTS 449
Query: 501 WDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFR 560
WDN KDPERPLVIGY SPD+F +SYFIEAPL+YHDY+N+KVV YSAVVKADAKT RFR
Sbjct: 450 WDNPKDPERPLVIGYGSPDHF---LSYFIEAPLLYHDYENFKVVTYSAVVKADAKTNRFR 506
Query: 561 EKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 620
E+V+KKGGIWRDIYGIDEKKVA+M+REDK+DIL+ELTGHTANNKLGMMAC+PAP+QVTWI
Sbjct: 507 ERVLKKGGIWRDIYGIDEKKVASMIREDKVDILIELTGHTANNKLGMMACRPAPIQVTWI 566
Query: 621 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN 680
GYPNTTGLPTIDYRITDSLADP +TKQKHVEELI+LP CFLCYTPSPEAGPV PTPAL+N
Sbjct: 567 GYPNTTGLPTIDYRITDSLADPLDTKQKHVEELIQLPACFLCYTPSPEAGPVSPTPALSN 626
Query: 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE 740
GFITFGSFNNLAKITPKVLQVWARILCAV NSRL+VKCKPFCC+SVR FLSTLEQLGLE
Sbjct: 627 GFITFGSFNNLAKITPKVLQVWARILCAVSNSRLIVKCKPFCCESVRQTFLSTLEQLGLE 686
Query: 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 800
S RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPC+TM G VHAHNV
Sbjct: 687 STRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCITMRGLVHAHNV 746
Query: 801 GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 860
GVSLL+ VGL HL+AKNED+YV+LA+QLASDVTAL+NLR++LR+LMSKSP+CDG F
Sbjct: 747 GVSLLSTVGLGHLVAKNEDDYVRLAVQLASDVTALSNLRLTLRELMSKSPLCDGPKFIQD 806
Query: 861 LESTYRNMWHRYCKGDVPSLKRMEMLQQQ---VVSEE--------PSKF--SEPTKIIFA 907
LE TYR+MWHRYCKGD+PSL RME+LQ++ VV E+ P K EP
Sbjct: 807 LELTYRSMWHRYCKGDIPSLSRMEILQKEELDVVQEQLHQQPNTSPQKLVKDEPADDASG 866
Query: 908 KEGSPGS-------VMPNGFNQASPSMLNLSNIEENGV 938
E P S + NG+N + S + + EENGV
Sbjct: 867 PEHGPASKDNPLVLIKINGYNTSP-SSITSPSSEENGV 903
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization. Eustoma exaltatum subsp. russellianum (taxid: 52518) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1466 bits (3794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/844 (81%), Positives = 755/844 (89%), Gaps = 23/844 (2%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
EG DAL YANILRSRNKF DAL LY VL+KD NVEA IGKGICLQ Q++ R A D F+
Sbjct: 33 EGTDALRYANILRSRNKFADALQLYTTVLDKDGANVEALIGKGICLQAQSLPRQALDCFT 92
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
EAVK+DP+NACA THCG++YKDEG LVEAAE+Y KA SADPSYK A+E LAIVLTDLGTS
Sbjct: 93 EAVKVDPKNACALTHCGMIYKDEGHLVEAAEAYQKARSADPSYKAASEFLAIVLTDLGTS 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
LKLAGNT+DGIQKY EAL++D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAE
Sbjct: 153 LKLAGNTEDGIQKYCEALEVDSHYAPAYYNLGVVYSEMMQFDVALTCYEKAALERPLYAE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286
AYCNMGVIYKNRG+L++AIACY+RCL +SPNFEIAKNNMAIALTDLGTK
Sbjct: 213 AYCNMGVIYKNRGELDAAIACYDRCLTISPNFEIAKNNMAIALTDLGTK----------- 261
Query: 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346
VK+EGDINQGVAYYKKAL+YNWHYADAMYNLGVAYGEML F+MAIVFY
Sbjct: 262 ------------VKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFY 309
Query: 347 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406
ELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK
Sbjct: 310 ELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 369
Query: 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 466
MDAAA MIEKAI ANPTYAEAYNNLGVLYRDAGSI+L++ AYE+CL+IDPDSRNAGQNRL
Sbjct: 370 MDAAASMIEKAILANPTYAEAYNNLGVLYRDAGSITLSVQAYERCLQIDPDSRNAGQNRL 429
Query: 467 LAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVS 526
LAMNYI+EG DDKL++AHR+WGKRFM+LY+QYTSWDN K +RPLVIGYVSPD+FTHSVS
Sbjct: 430 LAMNYIDEGSDDKLYDAHREWGKRFMKLYAQYTSWDNPKVADRPLVIGYVSPDFFTHSVS 489
Query: 527 YFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR 586
YF+EAPL +HDY KVVVYS VVKADAKT+RF++KV+KKGG+WRDIYGIDEKKVA +VR
Sbjct: 490 YFVEAPLTHHDYTKCKVVVYSGVVKADAKTLRFKDKVLKKGGVWRDIYGIDEKKVATLVR 549
Query: 587 EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETK 646
EDK+DILVELTGHTANNKLG MAC+PAP+QVTWIGYPNTTGLP IDYRITDSLAD P T
Sbjct: 550 EDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPAIDYRITDSLADSPNTN 609
Query: 647 QKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARIL 706
QKHVEEL+RLPE FLCYTPSPEAGPVCPTPA++NGFITFGSFNNLAKITPKV+QVWARIL
Sbjct: 610 QKHVEELVRLPESFLCYTPSPEAGPVCPTPAISNGFITFGSFNNLAKITPKVMQVWARIL 669
Query: 707 CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS 766
CAVPNSRLVVKCKPFCCDS+R +FLSTLE+LGLESLRVDLLPLI LNHDHMQAYSLMDIS
Sbjct: 670 CAVPNSRLVVKCKPFCCDSIRQKFLSTLEELGLESLRVDLLPLIHLNHDHMQAYSLMDIS 729
Query: 767 LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLAL 826
LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL L+AK EDEYV LAL
Sbjct: 730 LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKTEDEYVSLAL 789
Query: 827 QLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEML 886
LASDV+AL LR SLR+LM KSPVCDG++F GLES YR+MWHRYC GD P+L+R+E+L
Sbjct: 790 DLASDVSALEELRKSLRELMIKSPVCDGESFTRGLESAYRSMWHRYCDGDSPALRRLEVL 849
Query: 887 QQQV 890
Q
Sbjct: 850 ADQT 853
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1457 bits (3771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/886 (78%), Positives = 771/886 (87%), Gaps = 37/886 (4%)
Query: 7 DVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVD 66
D S GRE + V +P +G V L +GKD L YANILRSRNKF +
Sbjct: 7 DSSEGRESNGV-----------VPERNGGAVPAKQQL---DGKDTLRYANILRSRNKFAE 52
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
AL LY VLEKD NVEA IGKGICLQ Q++ A + F+EAV++DP NACA T+CG++Y
Sbjct: 53 ALQLYNNVLEKDEANVEALIGKGICLQAQSLPMQAIECFNEAVRIDPGNACALTYCGMIY 112
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
KDEG LVEAAE+Y KA +ADPSYKPAAE LAIVLTDLGTSLKLAGNT++GIQKY EAL++
Sbjct: 113 KDEGHLVEAAEAYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEV 172
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D HYAPAYYNLGVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+LE+AIA
Sbjct: 173 DSHYAPAYYNLGVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIA 232
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306
CYERCL +SPNFEIAKNNMAIALTDLGTK VK+EGDIN
Sbjct: 233 CYERCLTISPNFEIAKNNMAIALTDLGTK-----------------------VKIEGDIN 269
Query: 307 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366
QGVAYYKKAL+YNWHYADAMYNLGVAYGEML F+MAIVFYELA HFNP CAEACNNLGVI
Sbjct: 270 QGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFEMAIVFYELALHFNPRCAEACNNLGVI 329
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA+ MI+KAI AN TYAE
Sbjct: 330 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAE 389
Query: 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 486
AYNNLGVLYRDAGSI+ A+ AYE+CL+IDPDSRNAGQNRLLA+NYI+EG DDKL++AHR+
Sbjct: 390 AYNNLGVLYRDAGSITSAVQAYEKCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHRE 449
Query: 487 WGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVY 546
WGKRF++LY QYTSWDN K +RPLVIGYVSPDYFTHSVSYFIEAPL +HDY NYKVVVY
Sbjct: 450 WGKRFLKLYPQYTSWDNPKVADRPLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVY 509
Query: 547 SAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLG 606
S VVKADAKT+RF++KV+KKGG+WRDIYGIDEKKVA++VREDK+DILVELTGHTANNKLG
Sbjct: 510 SGVVKADAKTLRFKDKVLKKGGLWRDIYGIDEKKVASLVREDKVDILVELTGHTANNKLG 569
Query: 607 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS 666
MAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLADPP+T QKHVEEL+RLPE FLCY+PS
Sbjct: 570 TMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQKHVEELVRLPESFLCYSPS 629
Query: 667 PEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 726
PEAGPVCPTPA+ NGFITFGSFNNLAKITPKVLQVWA+ILCAVPNSRLVVKCKPFCCDS+
Sbjct: 630 PEAGPVCPTPAILNGFITFGSFNNLAKITPKVLQVWAKILCAVPNSRLVVKCKPFCCDSI 689
Query: 727 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGV 786
R +FLSTL +LGLE LRVDLLPLI LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGV
Sbjct: 690 RQKFLSTLAELGLEPLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGV 749
Query: 787 PCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLM 846
PCVTMAGSVHAHNVGVSLLTKVGL L+AK+E+EYV LAL LA+DVTAL LRMSLR LM
Sbjct: 750 PCVTMAGSVHAHNVGVSLLTKVGLGRLVAKSENEYVSLALDLAADVTALQELRMSLRGLM 809
Query: 847 SKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVS 892
+KSPVCDG+NF GLES YRNMW RYC GD P+L+R+++LQ++ S
Sbjct: 810 AKSPVCDGENFTRGLESAYRNMWRRYCDGDAPALRRLDLLQEEPCS 855
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 232/837 (27%), Positives = 367/837 (43%), Gaps = 100/837 (11%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
GRL A +A+ L+P AH++ G L K +G + EA Y +A+ P++
Sbjct: 169 GRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPTF------ 222
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
AI ++L +G+ +Q Y EA+K+ P + AY NLG VY L + A+ CY+
Sbjct: 223 -AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQ 281
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
A RP A A+ N+ IY +G L+ AI Y++ L+ P F A NN+ AL D+G
Sbjct: 282 HALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGR- 340
Query: 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
+++ V Y + L ++ AM NLG Y E
Sbjct: 341 -----------------------------VDEAVRCYNQCLALQPNHPQAMANLGNIYME 371
Query: 336 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395
A ++ + NNL +IYK + N A+ CY L I P + +L
Sbjct: 372 WNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYNEVLRIDPLAADALV 431
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
N G Y G++ A + AI PT AEA+ NL Y+D+G + AI +Y+Q L +
Sbjct: 432 NRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGHVEAAITSYKQALLLR 491
Query: 456 PDSRNAGQNRLLAMNYINEGHD-DKLFEAHRDWGKR------------------------ 490
PD A N L + + D K+F +R
Sbjct: 492 PDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPIL 551
Query: 491 ---FMRLYSQYTSWDNTKDPERPLV-----------------IGYVSPDYFTHSVSYFIE 530
R Y+ + S ++ P IGYVS D+ H +S+ +
Sbjct: 552 ALEISRKYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMG 611
Query: 531 APLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKI 590
+ H+ +N +V Y+ + A+ T +R+++ + + D+ + +A ++ +DKI
Sbjct: 612 SVFGMHNRENVEVFCYA--LSANDNT-EWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKI 668
Query: 591 DILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHV 650
IL+ L G+T + + A QPAP+QV+++G+P TTG IDY +TD P + +
Sbjct: 669 QILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYS 728
Query: 651 EELIRLPECFLCY--------TPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVW 702
E+L+ LP C+ P + P L F FN L K+ P+++ W
Sbjct: 729 EKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQLYKMDPEIVNTW 788
Query: 703 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762
IL VPNS L + P + RF + G++ ++ + + + +H++ L
Sbjct: 789 CNILKRVPNSALWLLRFPAAGEM---RFRTYAAAQGVQPDQI-IFTDVAMKSEHIRRSVL 844
Query: 763 MDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEY 821
D+ LDT G TT + L+ GVP +T+ A V SL GL H +I + +EY
Sbjct: 845 ADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGMIVNSLEEY 904
Query: 822 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVP 878
+ A+ LA + L L LR P+ D + LE +Y MW+ +C G P
Sbjct: 905 EEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHCSGQQP 961
|
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 177/652 (27%), Positives = 294/652 (45%), Gaps = 91/652 (13%)
Query: 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP-- 147
I Q + + R A S + A+K +P A A+++ G +YK+ G+L EA E Y AL P
Sbjct: 54 IHFQCRRLDRSAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 112
Query: 148 ----------------------------SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
Y P C V +DLG LK G ++
Sbjct: 113 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC---VRSDLGNLLKALGRLEEAKAC 169
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y +A++ P++A A+ NLG V++ + A+ +EKA P + +AY N+G + K
Sbjct: 170 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 229
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAI-----ALTDLGTKTYGRALLLFRLNGSNFQSP 294
+ A+A Y R L++SPN + N+A L DL TY RA+ L +F
Sbjct: 230 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL----QPHFPDA 285
Query: 295 FFEL---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 351
+ L +K +G + + Y AL +AD++ NL E + A+ Y A
Sbjct: 286 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 345
Query: 352 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411
P A A +NL + + + L +A+ Y+ A+ I P F+ + +N+G + A
Sbjct: 346 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 405
Query: 412 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA---------- 461
+ +AI NP +A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 406 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 465
Query: 462 ----------------------GQNRLLAMN-------YINEGHDDKLFEAHRDWGKRFM 492
+NRL +++ ++ G + E H + +
Sbjct: 466 VCDWTDYDERMKKLVSIVAEQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKI 525
Query: 493 RLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVV 550
+ + Y + K + L +GYVS D+ H S+ +++ H+ ++V Y+ +
Sbjct: 526 NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--L 583
Query: 551 KADAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMA 609
D T FR KVM + + D+ I K A + +D I ILV + G+T + + A
Sbjct: 584 SPDDGT-NFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFA 642
Query: 610 CQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 661
+PAP+Q W+GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 643 LRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 694
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/626 (26%), Positives = 289/626 (46%), Gaps = 36/626 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 96 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 156 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIW 208
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +
Sbjct: 209 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 268
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT-----KTYGRALLLFRLNGS 289
Y +G ++ AI Y R + + P+F A N+A AL + G+ Y AL L +
Sbjct: 269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 328
Query: 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 349
+ + + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 329 SLNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 387
Query: 350 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G +
Sbjct: 388 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 447
Query: 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNR 465
A A+ P + +AY NL A + + D Y++ +K + + +NR
Sbjct: 448 AIASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVAEQLEKNR 501
Query: 466 LLAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYV 516
L +++ ++ G + E H + + + + Y + K + L +GYV
Sbjct: 502 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 561
Query: 517 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 576
S D+ H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQI 618
Query: 577 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 635
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 636 TDSLADPPETKQKHVEELIRLPECFL 661
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTFF 704
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 162/622 (26%), Positives = 286/622 (45%), Gaps = 28/622 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 96 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 156 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIW 208
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +
Sbjct: 209 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 268
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT-----KTYGRALLLFRLNGS 289
Y +G ++ AI Y R + + P+F A N+A AL + G+ Y AL L +
Sbjct: 269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 328
Query: 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 349
+ + + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 329 SLNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 387
Query: 350 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G +
Sbjct: 388 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 447
Query: 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469
A A+ P + +AY NL + + + ++ + I D +NRL ++
Sbjct: 448 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE--KNRLPSV 505
Query: 470 N-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDY 520
+ ++ G + E H + + + + Y + K + L +GYVS D+
Sbjct: 506 HPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDF 565
Query: 521 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID-EK 579
H S+ +++ H+ ++V Y+ + D T FR KVM + + D+ I
Sbjct: 566 GNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKVMAEANHFIDLSQIPCNG 622
Query: 580 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSL 639
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQE 682
Query: 640 ADPPETKQKHVEELIRLPECFL 661
P E +++ E+L +P F
Sbjct: 683 TSPAEVAEQYSEKLAYMPHTFF 704
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | ||||||
| 255579381 | 930 | o-linked n-acetylglucosamine transferase | 0.972 | 0.987 | 0.853 | 0.0 | |
| 225440809 | 914 | PREDICTED: probable UDP-N-acetylglucosam | 0.967 | 0.998 | 0.850 | 0.0 | |
| 224088480 | 934 | predicted protein [Populus trichocarpa] | 0.971 | 0.981 | 0.830 | 0.0 | |
| 224140075 | 917 | predicted protein [Populus trichocarpa] | 0.954 | 0.982 | 0.847 | 0.0 | |
| 356500631 | 928 | PREDICTED: probable UDP-N-acetylglucosam | 0.970 | 0.987 | 0.835 | 0.0 | |
| 256772634 | 916 | putative SPINDLY protein [Rosa lucieae] | 0.966 | 0.995 | 0.836 | 0.0 | |
| 75318818 | 932 | RecName: Full=Probable UDP-N-acetylgluco | 0.970 | 0.982 | 0.817 | 0.0 | |
| 356534448 | 929 | PREDICTED: probable UDP-N-acetylglucosam | 0.970 | 0.986 | 0.821 | 0.0 | |
| 356505394 | 919 | PREDICTED: probable UDP-N-acetylglucosam | 0.945 | 0.971 | 0.814 | 0.0 | |
| 449526080 | 925 | PREDICTED: probable UDP-N-acetylglucosam | 0.966 | 0.985 | 0.823 | 0.0 |
| >gi|255579381|ref|XP_002530535.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223529939|gb|EEF31867.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1669 bits (4323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/946 (85%), Positives = 857/946 (90%), Gaps = 28/946 (2%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQS-LPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW EK+ NG+E P++DNGFLKG Q P SGSPVAV + LKG E KD+LSYANILR
Sbjct: 1 MAWTEKNNGNGKEGGPIEDNGFLKGTQEPSPSASGSPVAVAAGLKGIEEKDSLSYANILR 60
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALA+YE VLEKDSGNVEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA
Sbjct: 61 SRNKFVDALAIYESVLEKDSGNVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACAL 120
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYK+EGRLVEAAESY KAL ADP YKPAAECL+IVLTDLGTSLKL+GNTQ+GIQK
Sbjct: 121 THCGILYKEEGRLVEAAESYQKALRADPLYKPAAECLSIVLTDLGTSLKLSGNTQEGIQK 180
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
YYEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVIYKNRG
Sbjct: 181 YYEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRG 240
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299
DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK V
Sbjct: 241 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------V 277
Query: 300 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359
KLEGDINQG+AYYKKALYYNWHYADAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEA
Sbjct: 278 KLEGDINQGIAYYKKALYYNWHYADAMYNLGVAYGEMLKFDNAIVFYELAFHFNPHCAEA 337
Query: 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419
CNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI
Sbjct: 338 CNNLGVIYKDRDNLDKAVECYQTALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIM 397
Query: 420 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
ANPTYAEAYNNLGVLYRDAG+I +AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEGHD+K
Sbjct: 398 ANPTYAEAYNNLGVLYRDAGNIPMAINAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDEK 457
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ 539
LFEAHRDWG+RFMRLY QYT WDN KD +RPLVIGYVSPDYFTHSVSYFIEAPLVYHDY
Sbjct: 458 LFEAHRDWGRRFMRLYPQYTMWDNPKDLDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYA 517
Query: 540 NYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGH 599
NYKVVVYSAVVKADAKTIRFREKV+K+GGIWRDIYGIDEKKVA+MVRED +DILVELTGH
Sbjct: 518 NYKVVVYSAVVKADAKTIRFREKVLKQGGIWRDIYGIDEKKVASMVREDNVDILVELTGH 577
Query: 600 TANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPEC 659
TANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLADP +TKQKHVEEL+RLP+C
Sbjct: 578 TANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPRDTKQKHVEELVRLPDC 637
Query: 660 FLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCK 719
FLCYTPSPEAGPVCPTPAL NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCK
Sbjct: 638 FLCYTPSPEAGPVCPTPALANGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCK 697
Query: 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC 779
PFCCDSVR RFL+ LE+LGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC
Sbjct: 698 PFCCDSVRQRFLTMLEELGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC 757
Query: 780 ESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 839
ESLYMGVPCVTMAG++HAHNVGVSLL+KVGL HL+A+NED YVQLALQLASD+ AL+NLR
Sbjct: 758 ESLYMGVPCVTMAGAIHAHNVGVSLLSKVGLGHLVAQNEDNYVQLALQLASDIPALSNLR 817
Query: 840 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEE-PSKF 898
MSLRDLMSKSPVCDG F LGLES+YR+MWHRYCKGDVPSLKRME+L+QQ SE P++
Sbjct: 818 MSLRDLMSKSPVCDGSKFTLGLESSYRDMWHRYCKGDVPSLKRMELLKQQKGSEAVPNEN 877
Query: 899 SEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEEN--GVQLNQ 942
EPT+ F EG P SV NG+N S S+LN S+ EEN QLN
Sbjct: 878 FEPTRNAFPVEGPPESVKLNGYNIVSSSILNRSS-EENVSQTQLNH 922
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440809|ref|XP_002281883.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297740152|emb|CBI30334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1649 bits (4271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/938 (85%), Positives = 844/938 (89%), Gaps = 25/938 (2%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EK+V NGR+R+PV NGF K S +S S + G K FEGKDALSYANILRS
Sbjct: 1 MAWTEKEVGNGRDREPVGGNGFSK--VSQTSSSTSSTSPGCLPKKFEGKDALSYANILRS 58
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALA+YE +LEKD+GNVEAHIGKGICLQMQNMGRLAF+SFSEA++ DPQN CA T
Sbjct: 59 RNKFADALAMYENILEKDNGNVEAHIGKGICLQMQNMGRLAFESFSEAIRQDPQNLCALT 118
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
H GILYKDEGRL+EAAESY KAL D SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKY
Sbjct: 119 HLGILYKDEGRLLEAAESYDKALRIDSSYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKY 178
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVI+KNRGD
Sbjct: 179 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAALERPMYAEAYCNMGVIFKNRGD 238
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAI CYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 239 LESAITCYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 275
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC
Sbjct: 276 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 335
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGVIYKDRDNLDKAVECYQ+ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 336 NNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVA 395
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEAYNNLGVLYRDAG+IS+AI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG+DDKL
Sbjct: 396 NPTYAEAYNNLGVLYRDAGNISMAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGNDDKL 455
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
FEAHRDWG+RFMRLY QYTSWDN KDPERPLV+GYVSPDYFTHSVSYFIEAPLV HDY N
Sbjct: 456 FEAHRDWGRRFMRLYPQYTSWDNPKDPERPLVVGYVSPDYFTHSVSYFIEAPLVNHDYAN 515
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
YKVVVYSAVVKADAKTIRFR+KV+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHT
Sbjct: 516 YKVVVYSAVVKADAKTIRFRDKVLKRGGVWRDIYGIDEKKVASMVREDKVDILVELTGHT 575
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDSLAD P+T QKHVEEL+RLPECF
Sbjct: 576 ANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADLPDTSQKHVEELVRLPECF 635
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCY PSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP
Sbjct: 636 LCYMPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 695
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
FCCDSVR RFLSTLEQLGLESLRVDLLPLILLNHDHMQAY+LMDISLDTFPYAGTTTTCE
Sbjct: 696 FCCDSVRQRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYALMDISLDTFPYAGTTTTCE 755
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SL+MGVPCVTMAGSVHAHNVGVSLL KVGL L+AK EDEYVQLALQLASD+TAL+NLRM
Sbjct: 756 SLFMGVPCVTMAGSVHAHNVGVSLLNKVGLGRLVAKTEDEYVQLALQLASDITALSNLRM 815
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPSKFSE 900
SLRDLMSKSPVC+G NFAL LESTYR+MW RYCKGDVPSL+RME+LQQ+ E K E
Sbjct: 816 SLRDLMSKSPVCNGPNFALALESTYRSMWRRYCKGDVPSLRRMEILQQENSEEPVVKLPE 875
Query: 901 PTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGV 938
PTKI +++ S GS+ NG NQ SML S EENGV
Sbjct: 876 PTKITNSRDDSSGSIKTNGLNQVPSSMLKHSTSEENGV 913
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088480|ref|XP_002308458.1| predicted protein [Populus trichocarpa] gi|222854434|gb|EEE91981.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1644 bits (4256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/949 (83%), Positives = 844/949 (88%), Gaps = 32/949 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D N RE++P DNGFLKG Q P SGS V KGF+GKDALSYANILRS
Sbjct: 1 MAWTENDAGNVREKEPTGDNGFLKGSQPSPDPSGSRVGSSPAQKGFDGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE LE DSGNVEA+IGKGICLQMQNM RLAFDSF+EA+KLDP+NACA T
Sbjct: 61 RNKFADALALYESALENDSGNVEAYIGKGICLQMQNMERLAFDSFAEAIKLDPENACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL ADPSYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YDALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 277
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDINQGV YYKKALYYNWHYADAMYNLGVAYGEMLKF+MAIVFYELAFHFNPHCAEAC
Sbjct: 278 LEGDINQGVTYYKKALYYNWHYADAMYNLGVAYGEMLKFEMAIVFYELAFHFNPHCAEAC 337
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGVIYKDRDNLDKAVECYQ LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 338 NNLGVIYKDRDNLDKAVECYQATLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMA 397
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEAYNNLGVLYRD G+I++AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGHDDKL
Sbjct: 398 NPTYAEAYNNLGVLYRDVGNITMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKL 457
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
F+AHR+WG+RFMRLY Q+TSWDN K PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY N
Sbjct: 458 FQAHREWGRRFMRLYPQFTSWDNPKVPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYAN 517
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
Y VVVYSAVVK+DAKT RFREKV+KKGG+WRDIYGIDEKKVA+M+REDK+DILVELTGHT
Sbjct: 518 YMVVVYSAVVKSDAKTNRFREKVLKKGGMWRDIYGIDEKKVASMIREDKVDILVELTGHT 577
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS DPP TKQKHVEEL+RLPECF
Sbjct: 578 ANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSFTDPPHTKQKHVEELVRLPECF 637
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCY PSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP
Sbjct: 638 LCYIPSPEAGPVTPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 697
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
F CDSVR RFL+ LEQLGLE LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE
Sbjct: 698 FGCDSVRQRFLTVLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 757
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SLYMGVPC+TMAG+VHAHNVGVSLL+KVGL HL+AKNE+EYVQLALQLASD++AL+NLRM
Sbjct: 758 SLYMGVPCITMAGAVHAHNVGVSLLSKVGLGHLVAKNEEEYVQLALQLASDISALSNLRM 817
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEE-PSKFS 899
SLR+LMSKSPVCDG NF LGLE+TYRNMWHRYCKGDVPSL+R+E+LQQQ + E+ P K S
Sbjct: 818 SLRELMSKSPVCDGPNFTLGLETTYRNMWHRYCKGDVPSLRRIELLQQQGIPEDVPIKNS 877
Query: 900 EPTKIIFAKEGS-------PGSVMPNGFNQASPSMLNLSNIEENGVQLN 941
+ T I +++G P SV NGF+ SP +N S EN Q+N
Sbjct: 878 DSTTITSSRDGPPESRDGLPESVKANGFSAVSPPTVNHS-CGENRSQVN 925
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140075|ref|XP_002323412.1| predicted protein [Populus trichocarpa] gi|222868042|gb|EEF05173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/929 (84%), Positives = 838/929 (90%), Gaps = 28/929 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW E D + RE++ ++DNGFLKG Q GTSGSPV KGFEGKDALSYANILRS
Sbjct: 1 MAWTENDAGSVREKELIEDNGFLKGSQPSTGTSGSPVVSSPVQKGFEGKDALSYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DALALYE VLEKDSG VEA+IGKGICLQMQNMGRLAFDSF+EA+KLDPQNACA T
Sbjct: 61 RNKFADALALYESVLEKDSGIVEAYIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRL+EAAESYHKAL AD SYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKY
Sbjct: 121 HCGILYKDEGRLLEAAESYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALK+DPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKVDPHYAPAYYNLGVVYSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAIACYERCLAVSPNFEIAKNNMAIALTD GTK VK
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDFGTK-----------------------VK 277
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDI+QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF+MAIVFYELAF+FNPHCAEAC
Sbjct: 278 LEGDISQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFEMAIVFYELAFNFNPHCAEAC 337
Query: 361 NNLGVIYKDRDNLDKAVECYQ----MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
NNLGVIYKDRDNLDKAVECYQ +LSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEK
Sbjct: 338 NNLGVIYKDRDNLDKAVECYQANSDTSLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEK 397
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
AI ANPTYAEAYNNLGVLYRDAG+IS+AI AYEQCL+IDPDSRNAGQNRLLAMNYINEGH
Sbjct: 398 AIMANPTYAEAYNNLGVLYRDAGNISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGH 457
Query: 477 DDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYH 536
DDKLFEAHRDWG+RFMRLY QYTSWDN K P+RPLVIGYVSPDYFTHSVSYFIEAPLVYH
Sbjct: 458 DDKLFEAHRDWGRRFMRLYPQYTSWDNPKVPDRPLVIGYVSPDYFTHSVSYFIEAPLVYH 517
Query: 537 DYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVEL 596
Y NYKVVVYSAVVK DAKT RF+EKV+K+GGIWRDIYGIDEKKVA MVREDK+DILVEL
Sbjct: 518 VYANYKVVVYSAVVKPDAKTNRFKEKVLKRGGIWRDIYGIDEKKVAIMVREDKVDILVEL 577
Query: 597 TGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRL 656
TGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS ADPP+TKQKHVEELIRL
Sbjct: 578 TGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSFADPPDTKQKHVEELIRL 637
Query: 657 PECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV 716
PECFLCY PSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV
Sbjct: 638 PECFLCYIPSPEAGPVAPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV 697
Query: 717 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT 776
KCKPFCCDSVR RFL+ LEQLGLE L VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT
Sbjct: 698 KCKPFCCDSVRQRFLTMLEQLGLEPLHVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT 757
Query: 777 TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836
TTCESLYMGVPCVTMAG+VHAHNVG SLL+ VGL HL+AKNE+EYVQ ALQLASD+ AL+
Sbjct: 758 TTCESLYMGVPCVTMAGAVHAHNVGASLLSNVGLGHLVAKNEEEYVQSALQLASDIAALS 817
Query: 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEE-P 895
NLRMSLRDLMSKSPVCDG NF LGLE+TYRNMWHRYCKGDVPSL+R+E+LQQQ V +E P
Sbjct: 818 NLRMSLRDLMSKSPVCDGPNFTLGLETTYRNMWHRYCKGDVPSLRRIELLQQQEVPKEVP 877
Query: 896 SKFSEPTKIIFAKEGSPGSVMPNGFNQAS 924
K ++ T+I +++G P S+ NGF+ S
Sbjct: 878 IKNTDSTRITSSRDGPPESIKANGFSAVS 906
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500631|ref|XP_003519135.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|401721241|gb|AFP99901.1| putative UDP-N-acetylglucosamin [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1633 bits (4229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/944 (83%), Positives = 845/944 (89%), Gaps = 28/944 (2%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILR 59
MAW E D +NGRE+ V +NGFLK S P + GS GS K EGKD +SYANILR
Sbjct: 1 MAWTEDSDGNNGREK-LVGENGFLK--VSEPSSDGSVGDGGSVSKRCEGKDDVSYANILR 57
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
SRNKFVDALALYE VLE D GNVEA IGKGICLQMQNMGRLAF+SF+EA++LDPQNACA
Sbjct: 58 SRNKFVDALALYERVLESDGGNVEALIGKGICLQMQNMGRLAFESFAEAIRLDPQNACAL 117
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179
THCGILYKDEGRLVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQK
Sbjct: 118 THCGILYKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQK 177
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNRG
Sbjct: 178 YFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRG 237
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299
DLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTK V
Sbjct: 238 DLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------V 274
Query: 300 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359
KLEGDI+ GVA+YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA
Sbjct: 275 KLEGDIDHGVAFYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 334
Query: 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419
CNNLGVIYKDRDNLDKAVECYQ+AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI
Sbjct: 335 CNNLGVIYKDRDNLDKAVECYQLALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAII 394
Query: 420 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
ANPTYAEAYNNLGVLYRDAG I+LAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DDK
Sbjct: 395 ANPTYAEAYNNLGVLYRDAGDIALAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDDK 454
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ 539
LFEAHRDWG+RFMRLYSQ+TSWDN+KDPERPLVIGYVSPDYFTHSVSYFIEAPL+YHDY
Sbjct: 455 LFEAHRDWGRRFMRLYSQFTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLLYHDYT 514
Query: 540 NYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGH 599
NYKVVVYSAVVKADAKTIRFREKV+KKGGIW+DIYG DEKKVA MVRED++DIL+ELTGH
Sbjct: 515 NYKVVVYSAVVKADAKTIRFREKVLKKGGIWKDIYGTDEKKVADMVREDQVDILIELTGH 574
Query: 600 TANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPEC 659
TANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS ADPPETKQKHVEEL+RLP+C
Sbjct: 575 TANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSQADPPETKQKHVEELVRLPDC 634
Query: 660 FLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCK 719
FLCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQVWA+ILCA+PNSRLVVKCK
Sbjct: 635 FLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWAKILCAIPNSRLVVKCK 694
Query: 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC 779
PFCCDSVR RFLSTLE+LGLE LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC
Sbjct: 695 PFCCDSVRQRFLSTLEKLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC 754
Query: 780 ESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 839
ESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL +LIAKNEDEYV+LA++LASD++AL NLR
Sbjct: 755 ESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGNLIAKNEDEYVKLAVKLASDISALQNLR 814
Query: 840 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPS-KF 898
MSLR+LMSKSP+C+G F LGLESTYR MW RYCKGDVP+LKRME+LQQ V S +PS K
Sbjct: 815 MSLRELMSKSPLCNGAKFTLGLESTYRKMWRRYCKGDVPALKRMELLQQPVSSNDPSNKN 874
Query: 899 SEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQLNQ 942
SEPT+ + EGSPGSV NGF+ P LN N EENG LN
Sbjct: 875 SEPTRATNSSEGSPGSVKANGFSSTQPPKLNFVNCEENGGSLNH 918
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256772634|emb|CAX46402.1| putative SPINDLY protein [Rosa lucieae] | Back alignment and taxonomy information |
|---|
Score = 1628 bits (4216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/942 (83%), Positives = 844/942 (89%), Gaps = 30/942 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKG---FEGKDALSYANI 57
MAW +KD NG+E DPV +NGFL Q P TSGS +A G+T +G FE K+ +SYANI
Sbjct: 1 MAWTDKDGCNGKEGDPVVENGFLNCSQPSPSTSGSLLA-GATPEGGKSFEVKETISYANI 59
Query: 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117
LRSRNKF DAL+LYE VL+KD+ NVEAHIGKGICLQM+NMGRLAFDSF+EA+KLD +NAC
Sbjct: 60 LRSRNKFSDALSLYETVLDKDARNVEAHIGKGICLQMKNMGRLAFDSFTEAIKLDSENAC 119
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A THCGILYKDEGRL EAAESY KAL+ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG+
Sbjct: 120 ALTHCGILYKDEGRLREAAESYQKALNADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGL 179
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
QKYYEALK DPHYAPAYYNLGVVYSE+MQ+DTAL CYEKAALERPMY EAYCNMGVIYKN
Sbjct: 180 QKYYEALKTDPHYAPAYYNLGVVYSEMMQFDTALTCYEKAALERPMYTEAYCNMGVIYKN 239
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFE 297
RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK
Sbjct: 240 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---------------------- 277
Query: 298 LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 357
VKLEGDI+QG+AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA
Sbjct: 278 -VKLEGDIDQGIAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 336
Query: 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417
EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKA
Sbjct: 337 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKA 396
Query: 418 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 477
I ANPTYAEAYNNLGVLYRDAG+IS+AIDAYEQCLKIDPDSRNAGQNRLLAMNYI+EG D
Sbjct: 397 IIANPTYAEAYNNLGVLYRDAGNISMAIDAYEQCLKIDPDSRNAGQNRLLAMNYIHEGQD 456
Query: 478 DKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHD 537
DKLF AHRDWG+RFMRL SQ+TSWDN KDPERPLVIGYVSPDYFTHSVSYFIEAPL +H+
Sbjct: 457 DKLFVAHRDWGRRFMRLSSQHTSWDNLKDPERPLVIGYVSPDYFTHSVSYFIEAPLAHHE 516
Query: 538 YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELT 597
Y YKVVVYSAVVKADAKTIRFR+KV+KKGGIWRDIYGIDEKKVA++VREDKIDILVELT
Sbjct: 517 YAKYKVVVYSAVVKADAKTIRFRDKVLKKGGIWRDIYGIDEKKVASIVREDKIDILVELT 576
Query: 598 GHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLP 657
GHTANNKLG MAC+PAPVQVTWIGYPNTTGLP IDYRITDSLAD P++KQKHVEEL+RLP
Sbjct: 577 GHTANNKLGTMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLADSPDSKQKHVEELVRLP 636
Query: 658 ECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVK 717
ECFLCYTPSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQVWARIL A+PNSRLVVK
Sbjct: 637 ECFLCYTPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVLQVWARILSAIPNSRLVVK 696
Query: 718 CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTT 777
CKPF CDSVR RFLSTLEQLGLE LRVDLLPLILLN+DHMQAYSLMDISLDTFPYAGTTT
Sbjct: 697 CKPFSCDSVRERFLSTLEQLGLEPLRVDLLPLILLNYDHMQAYSLMDISLDTFPYAGTTT 756
Query: 778 TCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 837
TCESLYMGVPCVTMAGSVHAHNVGVS+L+ VGL +LIAKNE+EYVQLA+QLASD+TAL+N
Sbjct: 757 TCESLYMGVPCVTMAGSVHAHNVGVSILSTVGLGNLIAKNEEEYVQLAVQLASDITALSN 816
Query: 838 LRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEP-S 896
LRMSLRDLMS+SPVCDG F LGLES YRNMW RYCKGDVPS + ME+LQQ+V EEP +
Sbjct: 817 LRMSLRDLMSRSPVCDGPKFTLGLESAYRNMWGRYCKGDVPSQRHMEILQQEVTPEEPTT 876
Query: 897 KFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGV 938
K +EP +I + G P S+ NGFN M NLS+ EENGV
Sbjct: 877 KIAEPIRI--TESGFPASIKSNGFNPCPTPMANLSSSEENGV 916
|
Source: Rosa lucieae Species: Rosa lucieae Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75318818|sp|O82039.1|SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY gi|3319682|emb|CAA76834.1| SPINDLY protein [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/950 (81%), Positives = 840/950 (88%), Gaps = 34/950 (3%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
MAW EKDV NG+E D + +NGFLKG QS + GSPV + K FEGKDA++YANILRS
Sbjct: 1 MAWTEKDVENGKESDSLGNNGFLKGVQSSSDSKGSPVRISPVKKSFEGKDAITYANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKFVDALA+YE VL+KDSG++E+ IGKGICLQMQNMGRLAF+SF+EA+KLDPQNACA T
Sbjct: 61 RNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYKDEGRLVEAAESY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKY
Sbjct: 121 HCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEA+KID HYAPAYYNLGVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 277
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC
Sbjct: 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGVIYKDRDNLDKAVECYQMAL+IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 338 NNLGVIYKDRDNLDKAVECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIA 397
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEAYNNLGVLYRDAG+ISLAI+AYEQCLKIDPDSRNAGQNRLLAMNYINEG DDKL
Sbjct: 398 NPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRNAGQNRLLAMNYINEGSDDKL 457
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
+EAHRDWG RFMRLY QY SWDN+KDPER LVIGYVSPDYFTHSVSYFIEAPL YHDY N
Sbjct: 458 YEAHRDWGWRFMRLYQQYNSWDNSKDPERQLVIGYVSPDYFTHSVSYFIEAPLAYHDYAN 517
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
YKVV+YSAVVKADAKT RFR+KV+KKGG+WRDIYGIDEKKV++M+REDK+DI++ELTGHT
Sbjct: 518 YKVVIYSAVVKADAKTNRFRDKVLKKGGVWRDIYGIDEKKVSSMIREDKVDIMIELTGHT 577
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS+ADPP TKQKHVEEL+RLP+ F
Sbjct: 578 ANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSMADPPSTKQKHVEELVRLPDSF 637
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCYTPSPEAGPV P PALTNGF+TFGSFNNLAKITPKVLQVWARILCAVP+SRL+VKCKP
Sbjct: 638 LCYTPSPEAGPVSPAPALTNGFVTFGSFNNLAKITPKVLQVWARILCAVPHSRLIVKCKP 697
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
F CDSVR RFLS LEQLGLE RVDL+PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE
Sbjct: 698 FGCDSVRQRFLSILEQLGLEPQRVDLVPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 757
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SLYMGVPCVTM GSVHAHNVGVSLL VGL+ L+A+NEDEYV+LA+QLASDVT+L+NLRM
Sbjct: 758 SLYMGVPCVTMGGSVHAHNVGVSLLKTVGLRKLVARNEDEYVELAIQLASDVTSLSNLRM 817
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRME-------MLQQQVVSE 893
SLR+LM+KSP+CDG F LESTYR+MW RYC GDVPSL+RME L + VV E
Sbjct: 818 SLRELMAKSPLCDGAQFTQNLESTYRSMWRRYCDGDVPSLRRMELLQQQQQTLAELVVPE 877
Query: 894 E-PSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQLNQ 942
E P E T+I +K+ G + NGF + + N S IEENGVQLNQ
Sbjct: 878 ESPVSPIEKTRISASKD---GPIKENGFTVSPALVYNSSTIEENGVQLNQ 924
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534448|ref|XP_003535766.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1602 bits (4147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/945 (82%), Positives = 839/945 (88%), Gaps = 29/945 (3%)
Query: 1 MAWVE-KDVSNGRERDPVQDNGFLKGPQSLP-GTSGSPVAVGSTLKGFEGKDALSYANIL 58
MAW E D +NGRE+ V +NGFL + P G+ G V+V + +EGKD + +ANIL
Sbjct: 1 MAWTEDNDENNGREKKMVGENGFLIVSEPSPAGSGGDGVSVSTR---YEGKDDVLFANIL 57
Query: 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
RSRNKFVDALALYE VLE D GNVEA +GKGICLQMQNMGRLAF+SF+EA+++DPQNACA
Sbjct: 58 RSRNKFVDALALYERVLESDGGNVEALVGKGICLQMQNMGRLAFESFAEAIRMDPQNACA 117
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
THCGILYKDEG LVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQ
Sbjct: 118 LTHCGILYKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQ 177
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
KY+EALKIDPHYAPAYYNLGVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNR
Sbjct: 178 KYFEALKIDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNR 237
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298
GDLE+AI CYERCLAVSPNFEIAKNNMAIALTDLGTK
Sbjct: 238 GDLEAAITCYERCLAVSPNFEIAKNNMAIALTDLGTK----------------------- 274
Query: 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358
VKLEGDIN+GVA+YKKAL+YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE
Sbjct: 275 VKLEGDINRGVAFYKKALHYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 334
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418
ACNNLGVIYKDRDNLDKAVECYQ+AL IKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI
Sbjct: 335 ACNNLGVIYKDRDNLDKAVECYQLALGIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 394
Query: 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 478
ANPTYAEAYNNLGVLYRDAG ISLAI+AYEQCLKIDPDSRNAGQNRLLAMNYI+EG+DD
Sbjct: 395 IANPTYAEAYNNLGVLYRDAGDISLAINAYEQCLKIDPDSRNAGQNRLLAMNYIDEGNDD 454
Query: 479 KLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY 538
KLFEAHRDWG+RFMRLY Q+TSWDN+KDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY
Sbjct: 455 KLFEAHRDWGRRFMRLYPQFTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDY 514
Query: 539 QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTG 598
NYKV+VYSAVVKADAKTIRFREKV+KKGGIW+DIYG DEKKVA MVR+D++DIL+ELTG
Sbjct: 515 TNYKVIVYSAVVKADAKTIRFREKVLKKGGIWKDIYGTDEKKVADMVRQDQVDILIELTG 574
Query: 599 HTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPE 658
HTANNKLGM+AC+PAPVQVTWIGYPNTTGLPTIDYRITDS ADPPETKQKHVEEL+RLP+
Sbjct: 575 HTANNKLGMLACRPAPVQVTWIGYPNTTGLPTIDYRITDSRADPPETKQKHVEELVRLPD 634
Query: 659 CFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKC 718
FLCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQVWA+ILCA+PNSRLVVKC
Sbjct: 635 SFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWAKILCAIPNSRLVVKC 694
Query: 719 KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT 778
KPFCCDSVR RFLSTLE+LGLE LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT
Sbjct: 695 KPFCCDSVRQRFLSTLEKLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT 754
Query: 779 CESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANL 838
CESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL +LIAKNEDEYV+LAL+LASD++AL NL
Sbjct: 755 CESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGNLIAKNEDEYVKLALKLASDISALQNL 814
Query: 839 RMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQV-VSEEPSK 897
RMSLR+LMSKSP+CDG F LGLESTYR MW RYCKGDVP+LK ME+LQQ V + SK
Sbjct: 815 RMSLRELMSKSPLCDGAKFILGLESTYRQMWRRYCKGDVPALKCMELLQQPVSSNNPSSK 874
Query: 898 FSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQLNQ 942
SEPT+ + EGSP SV NGF+ P LN N EENG LN
Sbjct: 875 NSEPTRATNSSEGSPESVKANGFSSTQPPKLNFLNCEENGGSLNH 919
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505394|ref|XP_003521476.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1591 bits (4120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/929 (81%), Positives = 822/929 (88%), Gaps = 36/929 (3%)
Query: 10 NGRERDPVQD--NGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDA 67
NG ER+ + NGF + P++ SG EG D++SYAN+LRSRNKFVDA
Sbjct: 11 NGSERELAGNSYNGFAEAPEASVSASGC-----------EGNDSVSYANVLRSRNKFVDA 59
Query: 68 LALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
L++YE VLE D NVEA IGKGICLQMQN GRLA++SFSEA+K+DPQNACA THCGIL+K
Sbjct: 60 LSIYERVLESDGANVEALIGKGICLQMQNKGRLAYESFSEAIKVDPQNACALTHCGILHK 119
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
DEGRLVEAAESY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQDGIQKY+EALK+D
Sbjct: 120 DEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVD 179
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
PHYAPAYYNLGVVYSE+MQYDTAL YEKAA ERP+YAEAYCNMGVI+KNRGDLESAI C
Sbjct: 180 PHYAPAYYNLGVVYSEMMQYDTALSFYEKAASERPIYAEAYCNMGVIFKNRGDLESAITC 239
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQ 307
YERCL VSPNFEIAKNNMAIALTDLGTK VKLEGDINQ
Sbjct: 240 YERCLTVSPNFEIAKNNMAIALTDLGTK-----------------------VKLEGDINQ 276
Query: 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 367
GV YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY
Sbjct: 277 GVTLYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 336
Query: 368 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427
KDR+NLDKAVECYQ+ALSIKPNFSQSLNNLGVVYTVQGK+DAAA MIEKAI ANPTYAEA
Sbjct: 337 KDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEA 396
Query: 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 487
YNNLGVLYRDAG I+ AI+AYEQCLKIDPDSRNAGQNRLLAMNYI EGHDD LFE HRDW
Sbjct: 397 YNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDW 456
Query: 488 GKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS 547
G+RFMRLY QYTSWDN+KDPERPLVIGYVSPDYFTHSVSYFIE PLVYHDY N+KV+VYS
Sbjct: 457 GRRFMRLYPQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIETPLVYHDYSNFKVIVYS 516
Query: 548 AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM 607
AVVKAD+KTIRFREKV+ KGGIW+DIYGIDEK+VA MVRED++DILVELTGHTA+NKLGM
Sbjct: 517 AVVKADSKTIRFREKVLNKGGIWKDIYGIDEKRVANMVREDQVDILVELTGHTASNKLGM 576
Query: 608 MACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP 667
MAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEEL+RLPECFLCYTPSP
Sbjct: 577 MACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSP 636
Query: 668 EAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 727
EAGP+CPTPAL+NGF+TFGSFNNLAKITPKVLQVWARILCA+PNSRLVVKCKPFC DSVR
Sbjct: 637 EAGPICPTPALSNGFVTFGSFNNLAKITPKVLQVWARILCAIPNSRLVVKCKPFCSDSVR 696
Query: 728 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP 787
RFLSTLEQLGLE LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP
Sbjct: 697 QRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP 756
Query: 788 CVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 847
CVTMAGSVHAHNVGVSLL+KVGL+HLIA+NEDEYV+LA QLASD++AL NLRMSLR+LMS
Sbjct: 757 CVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMS 816
Query: 848 KSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPSKFSEPTKIIFA 907
KSP+CDG F LGLESTYR MWHRYC+GDVPSLKR+E+LQ+ + +K SEPT+I +
Sbjct: 817 KSPLCDGAKFILGLESTYRKMWHRYCRGDVPSLKRLELLQEVATGDLSNKNSEPTRIANS 876
Query: 908 KEGSPGSVMPNGFNQASPSMLNLSNIEEN 936
+E SPGSV NG+N S LN+ EEN
Sbjct: 877 REDSPGSVKANGYNTIPASKLNIHTREEN 905
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526080|ref|XP_004170042.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1588 bits (4111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/937 (82%), Positives = 836/937 (89%), Gaps = 25/937 (2%)
Query: 1 MAWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRS 60
M EKD S+G+E PV++NGFL+G QS +S S V++ S K EGKD L +ANILRS
Sbjct: 1 MERTEKDDSSGKEIVPVRENGFLQGSQSSSQSSSSLVSIDSAEKKVEGKDGLFFANILRS 60
Query: 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120
RNKF DAL LYE VLEKD N+EAHIGKGICLQMQNM + AF+SF+EA++LDPQNACA T
Sbjct: 61 RNKFSDALVLYEKVLEKDGDNLEAHIGKGICLQMQNMIKPAFESFAEAIRLDPQNACAFT 120
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180
HCGILYK+EGRLVEAAESY KAL DPSY+PAAECLA+VLTDLGTSLKL+GN+QDGIQKY
Sbjct: 121 HCGILYKEEGRLVEAAESYQKALRVDPSYRPAAECLAVVLTDLGTSLKLSGNSQDGIQKY 180
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
YEALKIDPHYAPAYYNLGVVYSE+MQYDTAL CYEKAA ERPMYAEAYCNMGVIYKNRGD
Sbjct: 181 YEALKIDPHYAPAYYNLGVVYSEMMQYDTALNCYEKAAFERPMYAEAYCNMGVIYKNRGD 240
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK VK
Sbjct: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-----------------------VK 277
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
LEGDINQGVAYYK+ALYYNWHYADAMYNLGVAYGEMLKFD AIVFYELAFHFNPHCAEAC
Sbjct: 278 LEGDINQGVAYYKRALYYNWHYADAMYNLGVAYGEMLKFDTAIVFYELAFHFNPHCAEAC 337
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
NNLGVIYKD+DNLDKAVECYQ+ALSIKPNFSQSLNNLGVVYTVQGKMDAAA MIEKAI A
Sbjct: 338 NNLGVIYKDQDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILA 397
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
NPTYAEAYNNLGVL+RDAG+I +A+DAYE+CLKIDPDSRNAGQNRLLAMNY +EGH+DKL
Sbjct: 398 NPTYAEAYNNLGVLHRDAGNIEMAVDAYERCLKIDPDSRNAGQNRLLAMNYTDEGHEDKL 457
Query: 481 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQN 540
+EAHRDWG+RFMRLY QYTSWDN KDPERPLVIGYVSPDYFTHSVSYF+EAPLV+HDY N
Sbjct: 458 YEAHRDWGRRFMRLYPQYTSWDNPKDPERPLVIGYVSPDYFTHSVSYFVEAPLVHHDYAN 517
Query: 541 YKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
YKVVVYSAVVKADAKTIRFR+KV+K+GG+WRDIYGIDEKKVA+MVREDK+DILVELTGHT
Sbjct: 518 YKVVVYSAVVKADAKTIRFRDKVLKQGGVWRDIYGIDEKKVASMVREDKVDILVELTGHT 577
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 660
ANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITD+L DPP TKQKHVEEL+RLPECF
Sbjct: 578 ANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDALTDPPNTKQKHVEELVRLPECF 637
Query: 661 LCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKP 720
LCYTPSPEAG V PAL+NGFITFGSFNNLAKITPKVL+VWARILCA+PNSRLVVKCKP
Sbjct: 638 LCYTPSPEAGSVSSAPALSNGFITFGSFNNLAKITPKVLEVWARILCAIPNSRLVVKCKP 697
Query: 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 780
FCCDSVR RFLSTLEQLGLES RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE
Sbjct: 698 FCCDSVRQRFLSTLEQLGLESQRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 757
Query: 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840
SLYMGVPCVTMAGSVHAHNVGVSLL+KVGL HL+AKNE+EYV+LALQLASDVTAL+NLRM
Sbjct: 758 SLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGHLVAKNEEEYVKLALQLASDVTALSNLRM 817
Query: 841 SLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEPSKFSE 900
SLR+LMSKSPVCDG NF LGLESTYR MWHRYCKGDVPSL+RME++QQ+ ++EE ++
Sbjct: 818 SLRNLMSKSPVCDGPNFILGLESTYRKMWHRYCKGDVPSLRRMEIVQQRELTEETITTTD 877
Query: 901 PTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENG 937
I A + SP S NG S +L+ S ENG
Sbjct: 878 SN--ITALKESPASTQSNGHCPVSLDVLDRSPCGENG 912
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 944 | ||||||
| TAIR|locus:2080722 | 914 | SPY "SPINDLY" [Arabidopsis tha | 0.883 | 0.912 | 0.656 | 1.5e-296 | |
| UNIPROTKB|Q749Z1 | 585 | GSU2601 "TPR domain/SEC-C moti | 0.580 | 0.936 | 0.382 | 4.2e-102 | |
| TIGR_CMR|GSU_2601 | 585 | GSU_2601 "TPR domain/SEC-C mot | 0.580 | 0.936 | 0.382 | 4.2e-102 | |
| UNIPROTKB|Q608I2 | 699 | MCA1509 "TPR domain protein" [ | 0.596 | 0.805 | 0.325 | 1e-75 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.621 | 0.566 | 0.254 | 1.4e-70 | |
| UNIPROTKB|F1RSV2 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.621 | 0.561 | 0.254 | 1.5e-70 | |
| UNIPROTKB|P81436 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.621 | 0.561 | 0.254 | 1.5e-70 | |
| UNIPROTKB|O15294 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.621 | 0.561 | 0.254 | 1.9e-70 | |
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 0.382 | 0.369 | 0.286 | 2e-70 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.621 | 0.561 | 0.254 | 2.9e-70 |
| TAIR|locus:2080722 SPY "SPINDLY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2847 (1007.3 bits), Expect = 1.5e-296, P = 1.5e-296
Identities = 558/850 (65%), Positives = 643/850 (75%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
L+ +N A + ++ D +N AH GI + + + A + + +A+ DP
Sbjct: 53 LRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNAC 112
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
A I+ + G ++ A + Q + A +LG +
Sbjct: 113 ALTHCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGI 172
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y +A P YA AY N+GV+Y ++A++CYE+ P + A NM + +
Sbjct: 173 QKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKN 232
Query: 272 LGT-----KTYGRALLL---FRLNGSNFQSPFFEL---VKLEGDINQGVAYYKKALYYNW 320
G Y R L + F + +N +L VKLEGD+ QGVAYYKKALYYNW
Sbjct: 233 RGDLEMAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNW 292
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECY
Sbjct: 293 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECY 352
Query: 381 QMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGS 440
QMALSIKPNF+QSLNNLGVVYTVQG NPTYAEA+NNLGVLYRDAG+
Sbjct: 353 QMALSIKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGN 412
Query: 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 500
I++AIDAYE+CLKIDPDSRNAGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTS
Sbjct: 413 ITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTS 472
Query: 501 WDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFR 560
WDN KDPERP+ IGY+SPD+FTHSVSYFIEAPL +HDY Y T RFR
Sbjct: 473 WDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFR 532
Query: 561 EKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 620
+KV+KKGG+W+DIYGIDEKK+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWI
Sbjct: 533 DKVLKKGGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWI 592
Query: 621 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN 680
GYPNTTGLPT+DYRITDSLADPP+TKQK VEEL+RLP+CFLCYTPSPEAGPVCPTPAL+N
Sbjct: 593 GYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSN 652
Query: 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE 740
GF+TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS+R RFL+TLEQLGLE
Sbjct: 653 GFVTFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLE 712
Query: 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 800
S RVDLLPLIL NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV
Sbjct: 713 SKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 772
Query: 801 GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 860
GVSLLTKVGL HL+AKNEDEYVQL++ LASDVTAL+ LRMSLRDLM+ SPVC+G +FA+G
Sbjct: 773 GVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVG 832
Query: 861 LESTYRNMWHRYCKGDVPSLKRMEMLQQQVVSEEP--SKFSEPTKIIFAKEGSPGSVMPN 918
LES YRNMW +YCKG+VPSL+RMEMLQ++V ++P SK P+++ E +P S+ N
Sbjct: 833 LESAYRNMWKKYCKGEVPSLRRMEMLQKEV-HDDPLISKDLGPSRVSVTGEATP-SLKAN 890
Query: 919 GFNQASPSML 928
G + PS L
Sbjct: 891 G-SAPVPSSL 899
|
|
| UNIPROTKB|Q749Z1 GSU2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 211/552 (38%), Positives = 310/552 (56%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 442
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 502
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 503 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 562
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 563 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 622
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 623 PNTTGLPTIDYRITDSLADPPETKQK-HVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 681
PNTTGL +DYRITD++ADPP + H E+LIRL + FLCYTP A PV P L
Sbjct: 332 PNTTGLRAMDYRITDAVADPPGSADALHTEQLIRLEQGFLCYTPPAGAPPVGEAPCLAGA 391
Query: 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 741
+TFGSFNNLAK++P+V+ W+ IL VP SRL++K K F ++ R R G+
Sbjct: 392 GVTFGSFNNLAKVSPQVIDAWSAILGRVPGSRLMLKFKGFADETCRRRVSDAFGARGVSP 451
Query: 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801
R++L+ + +DH+ Y+ +D++LDTFPY GT TTC++L+MGVP +T G+ H VG
Sbjct: 452 DRLELVSFVENFNDHLALYNRLDLALDTFPYNGTATTCDALWMGVPVLTCCGTRHVARVG 511
Query: 802 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861
S+LT +GL LI + +EY+ A LA+D LA LR +R ++ SP+CD FA +
Sbjct: 512 ASILTSLGLPELITHSPEEYISAAAALAADPARLAALRRDMRPRLAASPLCDPTGFARRM 571
Query: 862 ESTYRNMWHRYC 873
E+ R++W R+C
Sbjct: 572 ETALRDIWRRWC 583
|
|
| TIGR_CMR|GSU_2601 GSU_2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 211/552 (38%), Positives = 310/552 (56%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 442
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 502
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 503 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 562
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 563 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 622
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 623 PNTTGLPTIDYRITDSLADPPETKQK-HVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 681
PNTTGL +DYRITD++ADPP + H E+LIRL + FLCYTP A PV P L
Sbjct: 332 PNTTGLRAMDYRITDAVADPPGSADALHTEQLIRLEQGFLCYTPPAGAPPVGEAPCLAGA 391
Query: 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 741
+TFGSFNNLAK++P+V+ W+ IL VP SRL++K K F ++ R R G+
Sbjct: 392 GVTFGSFNNLAKVSPQVIDAWSAILGRVPGSRLMLKFKGFADETCRRRVSDAFGARGVSP 451
Query: 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801
R++L+ + +DH+ Y+ +D++LDTFPY GT TTC++L+MGVP +T G+ H VG
Sbjct: 452 DRLELVSFVENFNDHLALYNRLDLALDTFPYNGTATTCDALWMGVPVLTCCGTRHVARVG 511
Query: 802 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861
S+LT +GL LI + +EY+ A LA+D LA LR +R ++ SP+CD FA +
Sbjct: 512 ASILTSLGLPELITHSPEEYISAAAALAADPARLAALRRDMRPRLAASPLCDPTGFARRM 571
Query: 862 ESTYRNMWHRYC 873
E+ R++W R+C
Sbjct: 572 ETALRDIWRRWC 583
|
|
| UNIPROTKB|Q608I2 MCA1509 "TPR domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 190/583 (32%), Positives = 293/583 (50%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAE-- 358
+G I+ G+ + A + +A NLG+A E + A+ +E +P H A+
Sbjct: 98 DGAIDLGIQALQDATRLDPERMEAWMNLGLALVEAKRHPEAVAAFERLLEIDPDHEADVA 157
Query: 359 ---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GXXXXXXXX 413
A G++ K+ +D+ + + L + + + + + ++
Sbjct: 158 FASALVGAGIMLKESAMVDRGISVLESKL--RDGYERYAAGVILARALEHRNRLSEAIRQ 215
Query: 414 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
NP + NNL G + A Y C+K PD +A L +NY
Sbjct: 216 HQALLEANPEHIGIRNNLARCLVQLGRVEEARTHYRLCVKSAPDKYHAFSALLAGLNY-E 274
Query: 474 EGHDDKLFEAH-RDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSY-FIE 530
+ EA R+W K+ + Y + N +DPERPL IGY+SPD H V + F+
Sbjct: 275 PNLTAAMHEAEVRNWEKQLALPHYPVEPEFPNERDPERPLKIGYLSPDLRQHVVGHNFL- 333
Query: 531 APLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKI 590
P++ H + R ++ WR ++G + +VAA++RED++
Sbjct: 334 -PVLEHRNREQFSVFCYHIGEKQDDMSR---RIAALADHWRHVHGASDDEVAALIREDRV 389
Query: 591 DILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHV 650
DILV+L+GHT++ + + A +PAPVQV+W+GY +TTGL T+D+ ITD + PP+ KQ
Sbjct: 390 DILVDLSGHTSHTQPLVFARKPAPVQVSWLGYFDTTGLATMDWFITDPYSSPPDQKQYFS 449
Query: 651 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVP 710
E L R+P L Y P P+ V PA NG+ITFG NNLAKI +VL +WA+IL A P
Sbjct: 450 ERLYRMPHTRLYYHPYPDMPAVGQLPAKRNGYITFGCLNNLAKINTEVLDLWAQILAASP 509
Query: 711 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 770
SRL+++ C RF + + GL+ R++L P L Q Y +DI+LD F
Sbjct: 510 TSRLLIQTVALCDRLNLERFRALCVERGLDPARLELRPATSLEK-FAQTYHQIDIALDPF 568
Query: 771 PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 830
P+ G T+ ++L+MGVP +T+ A +S+L +GL HLIA N+ +YV +AL+L+
Sbjct: 569 PFCGGFTSFDALWMGVPVITLEQQRLAGRQTLSMLMNLGLPHLIASNKTDYVSIALELSR 628
Query: 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873
D + + LR LR +SP+ D F LE YR W +C
Sbjct: 629 DSSEIEQLRSELRSRFLQSPLIDHCRFTRELEKAYRFFWSHWC 671
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
Identities = 159/625 (25%), Positives = 281/625 (44%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 87 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 146
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 147 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 199
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 200 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 259
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT-----YGRALLLFRLNGSN 290
+G ++ AI Y R + + P+F A N+A AL + G+ Y AL L + +
Sbjct: 260 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 319
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 320 LNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 378
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXX 410
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 379 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 438
Query: 411 XXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRL 466
P + +AY NL A + + D Y++ +K + + +NRL
Sbjct: 439 IASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 492
Query: 467 LAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYV 516
+++ Y ++ G + E H + + + + +++ KD + L +GYV
Sbjct: 493 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYV 551
Query: 517 SPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGI 576
S D+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 552 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQI 608
Query: 577 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 635
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 609 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 668
Query: 636 TDSLADPPETKQKHVEELIRLPECF 660
TD P E +++ E+L +P F
Sbjct: 669 TDQETSPAEVAEQYSEKLAYMPHTF 693
|
|
| UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 1.5e-70, Sum P(2) = 1.5e-70
Identities = 159/625 (25%), Positives = 281/625 (44%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT-----YGRALLLFRLNGSN 290
+G ++ AI Y R + + P+F A N+A AL + G+ Y AL L + +
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 329
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 330 LNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 388
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXX 410
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 389 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 448
Query: 411 XXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRL 466
P + +AY NL A + + D Y++ +K + + +NRL
Sbjct: 449 IASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Query: 467 LAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYV 516
+++ Y ++ G + E H + + + + +++ KD + L +GYV
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYV 561
Query: 517 SPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGI 576
S D+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQI 618
Query: 577 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 635
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 636 TDSLADPPETKQKHVEELIRLPECF 660
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
| UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 1.5e-70, Sum P(2) = 1.5e-70
Identities = 159/625 (25%), Positives = 281/625 (44%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT-----YGRALLLFRLNGSN 290
+G ++ AI Y R + + P+F A N+A AL + G+ Y AL L + +
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 329
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 330 LNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 388
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXX 410
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 389 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 448
Query: 411 XXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRL 466
P + +AY NL A + + D Y++ +K + + +NRL
Sbjct: 449 IASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Query: 467 LAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYV 516
+++ Y ++ G + E H + + + + +++ KD + L +GYV
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYV 561
Query: 517 SPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGI 576
S D+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQI 618
Query: 577 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 635
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 636 TDSLADPPETKQKHVEELIRLPECF 660
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
| UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 1.9e-70, Sum P(2) = 1.9e-70
Identities = 159/625 (25%), Positives = 281/625 (44%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT-----YGRALLLFRLNGSN 290
+G ++ AI Y R + + P+F A N+A AL + G+ Y AL L + +
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 329
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 330 LNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 388
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXX 410
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 389 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 448
Query: 411 XXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRL 466
P + +AY NL A + + D Y++ +K + + +NRL
Sbjct: 449 IASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Query: 467 LAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYV 516
+++ Y ++ G + E H + + + + +++ KD + L +GYV
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYV 561
Query: 517 SPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGI 576
S D+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQI 618
Query: 577 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 635
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 636 TDSLADPPETKQKHVEELIRLPECF 660
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 2.0e-70, Sum P(2) = 2.0e-70
Identities = 108/377 (28%), Positives = 177/377 (46%)
Query: 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIW 570
L IGYVS D+ H +S+ + + H+ +N +R+++ + +
Sbjct: 592 LRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNT---EWRQRIQSEAEHF 648
Query: 571 RDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPT 630
D+ + +A ++ +DKI IL+ L G+T + + A QPAP+QV+++G+P TTG
Sbjct: 649 LDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATY 708
Query: 631 IDYRITDSLADPPETKQKHVEELIRLPECFLC--YTPS------PEAGPVCPTPALTNGF 682
IDY +TD P + + E+L+ LP C+ Y P + P L
Sbjct: 709 IDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDK 768
Query: 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 742
F FN L K+ P+++ W IL VPNS L + P +R R + + G++
Sbjct: 769 FIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFP-AAGEMRFRTYAAAQ--GVQPD 825
Query: 743 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 802
++ + + + +H++ L D+ LDT G TT + L+ GVP +T+ A V
Sbjct: 826 QI-IFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAG 884
Query: 803 SLLTKVGLKH-LIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861
SL GL H +I + +EY + A+ LA + L L LR P+ D + L
Sbjct: 885 SLCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNL 944
Query: 862 ESTYRNMWHRYCKGDVP 878
E +Y MW+ +C G P
Sbjct: 945 ERSYFKMWNLHCSGQQP 961
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 159/625 (25%), Positives = 281/625 (44%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 156
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 157 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 209
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT-----YGRALLLFRLNGSN 290
+G ++ AI Y R + + P+F A N+A AL + G+ Y AL L + +
Sbjct: 270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 329
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 330 LNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 388
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXX 410
+P A+A +N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 389 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 448
Query: 411 XXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK--IDPDSRNAGQNRL 466
P + +AY NL A + + D Y++ +K + + +NRL
Sbjct: 449 IASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 502
Query: 467 LAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD---PERPLVIGYV 516
+++ Y ++ G + E H + + + + +++ KD + L +GYV
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHPKDLKLSDGRLRVGYV 561
Query: 517 SPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGI 576
S D+ H S+ +++ H+ + FR KVM + + D+ I
Sbjct: 562 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQI 618
Query: 577 D-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRI 635
K A + +D I ILV + G+T + + A +PAP+Q W+GYP T+G +DY I
Sbjct: 619 PCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYII 678
Query: 636 TDSLADPPETKQKHVEELIRLPECF 660
TD P E +++ E+L +P F
Sbjct: 679 TDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82422 | SPY_HORVU | 2, ., 4, ., 1, ., - | 0.8175 | 0.8697 | 0.8697 | N/A | no |
| Q8LP10 | SPY_EUSER | 2, ., 4, ., 1, ., - | 0.7771 | 0.9237 | 0.9498 | N/A | no |
| O82039 | SPY_PETHY | 2, ., 4, ., 1, ., - | 0.8178 | 0.9703 | 0.9828 | N/A | no |
| Q96301 | SPY_ARATH | 2, ., 4, ., 1, ., - | 0.8165 | 0.9417 | 0.9726 | yes | no |
| Q6YZI0 | SPY_ORYSJ | 2, ., 4, ., 1, ., - | 0.7855 | 0.8993 | 0.9158 | yes | no |
| Q8RVB2 | SPY_SOLLC | 2, ., 4, ., 1, ., - | 0.8029 | 0.9724 | 0.9860 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 944 | |||
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 8e-94 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 9e-24 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-21 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 2e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-19 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-19 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-18 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-17 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-16 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-15 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-14 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-11 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-10 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-10 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-10 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 8e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-07 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-07 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-07 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-07 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-07 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 1e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 3e-06 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-06 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-06 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 4e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-06 | |
| PRK12370 | 553 | PRK12370, PRK12370, invasion protein regulator; Pr | 5e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 1e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 1e-05 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-05 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 2e-05 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 3e-05 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 3e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-05 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 8e-05 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 9e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 1e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 1e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 3e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-04 | |
| PRK11189 | 296 | PRK11189, PRK11189, lipoprotein NlpI; Provisional | 3e-04 | |
| pfam10373 | 276 | pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom | 4e-04 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-04 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 6e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 6e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 8e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.001 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.001 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.001 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.002 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.004 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.004 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.004 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = 8e-94
Identities = 166/562 (29%), Positives = 248/562 (44%), Gaps = 56/562 (9%)
Query: 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLG 398
+A + + NP A NL + A+ ++A + P+ ++ L +L
Sbjct: 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143
Query: 399 VVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL--------- 443
Y + G+ A +E+A+ P Y L ++ S
Sbjct: 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQ 203
Query: 444 ------AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 497
L DP A N+LL + N +
Sbjct: 204 LALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVR------------------ 245
Query: 498 YTSWDNTKDPE-RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAK 555
+ D + L +GY+S D +H+V + + YHD ++V YS DA
Sbjct: 246 FPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDAL 305
Query: 556 TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 615
R V K W I +D+ ++A +R D IDILV+L GHT + + + A +PAP+
Sbjct: 306 QERISAAVEK----WYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI 361
Query: 616 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT 675
QV+W+GYP TTG P +DY I+D PP ++ + E+L RLP CY P PV P
Sbjct: 362 QVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLP---QCYQPVDGFEPVTPP 418
Query: 676 PA-----LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 730
P+ L + F FNN KITP+V +W +IL AVPNS L++K + R
Sbjct: 419 PSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARL 477
Query: 731 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT 790
E+ G++S R+ LP N DH Y + D+ LDT+PY G TT ++L+MGVP +T
Sbjct: 478 RDLAEREGVDSERLRFLP-PAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLT 536
Query: 791 MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSP 850
G A G S+ T G+ L+A + +YV+ A+ SD +R L+ SP
Sbjct: 537 RVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSP 596
Query: 851 VCDGQNFALGLESTYRNMWHRY 872
+ D + FA LE+ Y MW Y
Sbjct: 597 LFDPKAFARKLETLYWGMWSEY 618
|
Length = 620 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-24
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 4/187 (2%)
Query: 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 742
I + +FN L KI P LQ+W IL VPNS L + P ++ + ++GL
Sbjct: 286 IVYCNFNQLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQ---EMGLPPR 342
Query: 743 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 802
R+ + + +H++ L D+ LDT G TT + L+ G P VTM A V
Sbjct: 343 RI-VFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAA 401
Query: 803 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862
S LT +G LIAK+ EY +A++L +D L +R + + S + + + + LE
Sbjct: 402 SQLTTLGCPELIAKDRQEYEDIAVKLGTDREYLRKIRAKVWKARTSSTLFNTKQYCQDLE 461
Query: 863 STYRNMW 869
Y MW
Sbjct: 462 RLYLKMW 468
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 6e-23
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417
EA NLG +Y + D+A+E Y+ AL + P+ + + NL Y GK + A E EKA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 418 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
+ +P A+AY NLG+ Y G A++AYE+ L++DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-22
Identities = 103/415 (24%), Positives = 165/415 (39%), Gaps = 21/415 (5%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L A + + N+F +A AL + VL D GNV+A + KG L LA ++ +A+ L
Sbjct: 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL-AIVLTDLGTSLKLA 170
P N + + G E AE + AL P A L A+V +
Sbjct: 223 RPNNIAVLLALATILIEAGE-FEEAEKHADALLKKAPNSPLAHYLKALV------DFQ-K 274
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
N +D + +ALK P Y PA G +L + A + P +A
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290
+ I G ++ AIA L + P+ A + + A L + +A
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY--LALGDFEKAAEYLAKATEL 392
Query: 291 FQSPFFELVKLE--------GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342
P + + GD ++ +A + A + A L ++Y +FD A
Sbjct: 393 --DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450
Query: 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402
+ + P A N LG IY + +L KA E ++ ALSI+P+F + NL +
Sbjct: 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510
Query: 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
+G D A + EK + +P A L LY G+ A+ E+ +++P
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-21
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L +LG G+ + ++ Y +AL++DP A AYYNL Y +L +Y+ AL YEKA
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
P A+AY N+G+ Y G E A+ YE+ L + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 2e-20
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 570
L IGYVS D+ H S+ +++ H+ +V Y+ + D T FR KVM + +
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYA--LSPDDGT-NFRSKVMAESEHF 57
Query: 571 RDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 629
D+ I K A + +D I ILV + G+T + + A +PAP+QV W+GYP T+G
Sbjct: 58 VDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAT 117
Query: 630 TIDYRITDSLADPPETKQKHVEELIRLPECF 660
+DY ITDS+ P E ++ E+L +P F
Sbjct: 118 FMDYIITDSVTSPMELADQYSEKLAYMPHTF 148
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 8e-19
Identities = 96/441 (21%), Positives = 146/441 (33%), Gaps = 62/441 (14%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-------- 114
F A E D N A GI Q A A +LDP+
Sbjct: 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437
Query: 115 --------------------------NACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
NA H G +Y +G L +A E++ KALS +P
Sbjct: 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
+ PAA LA + D+ GN D IQ++ + L IDP A L +Y +
Sbjct: 498 FFPAAANLARI--DIQE-----GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI- 267
A+ EKAA P E + Y +G L+ A+A A ++
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD------AAPDSPEAW 604
Query: 268 ---ALTDLGTKTYGRALLLFR----LNGSNFQS----PFFELVKLEGDINQGVAYYKKAL 316
L +A+ F+ L + + V + + K+AL
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA--KAITSLKRAL 662
Query: 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 376
+A L + + A + +P A G +Y + + A
Sbjct: 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
Query: 377 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436
++ Y+ AL P+ SQ+ L G A + +E + +P A L LY
Sbjct: 723 IQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781
Query: 437 DAGSISLAIDAYEQCLKIDPD 457
AI Y+ +K PD
Sbjct: 782 AQKDYDKAIKHYQTVVKKAPD 802
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.6 bits (215), Expect = 9e-19
Identities = 75/285 (26%), Positives = 120/285 (42%), Gaps = 14/285 (4%)
Query: 204 LMQYDTALGCYEKAALERPMYAEA-YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L AL +A + A A + + G+L A+ E L + PN ++A
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFF--------ELVKLEGDINQGVAYYKK 314
+ +AL L AL L P L++ G + + +K
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 315 AL-YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDR 370
AL A E+ ++ A+ YE A +P AEA LG + +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 371 DNLDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429
++A+E + AL + P+ +++L NLG++Y GK + A E EKA+ +P AEA
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240
Query: 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 474
NL +L + G A++A E+ L++DPD N G LL + E
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALE 285
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-18
Identities = 101/437 (23%), Positives = 161/437 (36%), Gaps = 41/437 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP 113
A IL +F +A + +L+K + AH K + Q +N A ++ +A+K P
Sbjct: 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAP 292
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G G L +A + ++ L P+ A LA + L+L G
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRV 345
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ I AL +DP A LG Y L ++ A KA P A A +G+
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293
++GD AIA E + P A ++ + L+ L + + +AL +
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRA--DLLLILSYLRSGQFDKALAAAK-------- 455
Query: 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353
+L K + D A +N LG Y A +E A
Sbjct: 456 ---KLEKKQPD---------NASLHNL--------LGAIYLGKGDLAKAREAFEKALSIE 495
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413
P A NL I N D A++ ++ L+I P +++ L +Y G + A
Sbjct: 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555
Query: 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
+EKA NP E L Y G + A+ + PDS A +L +
Sbjct: 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL--MLGRAQLA 613
Query: 474 EGHDDKLFEAHRDWGKR 490
G +K + +
Sbjct: 614 AGDLNKAVSSFKKLLAL 630
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-18
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
GD ++ + YY+KAL + ADA YNL AY ++ K++ A+ YE A +P A+A
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPN 389
NLG+ Y ++A+E Y+ AL + PN
Sbjct: 73 NLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-18
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 383
+A+ NLG Y ++ +D A+ +YE A +P A+A NL Y ++A+E Y+ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423
L + P+ +++ NLG+ Y GK + A E EKA+ +P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-17
Identities = 86/415 (20%), Positives = 150/415 (36%), Gaps = 29/415 (6%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A + A I DA+ +E VL D N+ A + A +A +
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L+PQ Y +G+L +A ++A A P + E + LG + A
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD---SPEAWLM----LGRAQLAA 614
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ + + + L + P A A L Y+ + Y A+ ++A +P EA
Sbjct: 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPN----FEI------AKNNMAIALTDL--GTKTYG 278
+ + ESA + P FE+ + + A+ K
Sbjct: 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
+ +L+ + S G+ + V + L + + A L Y
Sbjct: 735 SSQNAIKLHRALLAS---------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
+D AI Y+ P A NNL +Y + + +A+E + AL + PN L+ LG
Sbjct: 786 YDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLG 844
Query: 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453
+ +G+ D A ++ KA+ P A +L + G + A ++ L
Sbjct: 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 7e-16
Identities = 91/368 (24%), Positives = 142/368 (38%), Gaps = 41/368 (11%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
S A+ LDP + A + G Y G +AAE KA DP A T LG
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-------NAAARTQLGI 405
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
S G+ + I A ++DP A L + Y Q+D AL +K ++P A
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA 465
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKTYGRALLLF 284
+ +G IY +GDL A +E+ L++ P+F A N+A I +
Sbjct: 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ-------------- 511
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
EG+ + + ++K L + A+ L Y + A+
Sbjct: 512 -----------------EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404
+ E A NP E L Y + L KA+ A P+ ++ LG
Sbjct: 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614
Query: 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--G 462
G ++ A +K +A P A A L Y + + AI + ++ L++ PD+ A G
Sbjct: 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674
Query: 463 QNRLLAMN 470
+LL
Sbjct: 675 LAQLLLAA 682
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-15
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A NLG +Y +L YD AL YEKA P A+AY N+ Y G E A+ YE+ L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 253 AVSPNFEIAKNNMAIALTDLGT-----KTYGRAL 281
+ P+ A N+ +A LG + Y +AL
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G LY G EA E Y KAL DP A +L + G ++ ++ Y +
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
AL++DP A AYYNLG+ Y +L +Y+ AL YEKA
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-14
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+ L+ N+ + +AL YE LE D N +A+ A + + +A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
++LDP NA A+ + G+ Y G+ EA E+Y KAL DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A L + Y E ++A + A +P A L + Y+ L+KA + ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGS 440
AL++ PN LNN G QGK + A + E+AI P A + N G+ AG
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 477
A + L+IDP + LA Y G
Sbjct: 151 FDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-14
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451
++L NLG +Y G D A E EKA+ +P A+AY NL Y G A++ YE+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 452 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 483
L++DPD+ A L + Y G ++ EA
Sbjct: 61 LELDPDNAKA--YYNLGLAYYKLGKYEEALEA 90
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 9e-12
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 30/130 (23%)
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285
EA N+G +Y GD + A+ YE+ L + P+ A N+A A L
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL------------- 47
Query: 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 345
G + + Y+KAL + A A YNLG+AY ++ K++ A+
Sbjct: 48 -----------------GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEA 90
Query: 346 YELAFHFNPH 355
YE A +P+
Sbjct: 91 YEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYE 449
+++L NLG G D A E EKA+ +P AEAY NL + Y G A++ E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 450 QCLKIDP 456
+ L++DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIAC 247
A A NLG +L YD A+ YEKA P AEAY N+ + Y G D E A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 248 YERCLAVSP 256
E+ L + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-11
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 415
AEA NLG + D+A+E Y+ AL + P+ +++ NL + Y GK + A E +E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 416 KAIAANP 422
KA+ +P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-11
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 6/194 (3%)
Query: 290 NFQSPFFELVKL---EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VF 345
N F L K+ GD +KAL + + L AY KF +
Sbjct: 54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDEL 113
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
+ AE G+ Y L+ A + Y+ AL+I P + L + +
Sbjct: 114 PGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN 173
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ D A +I++ + A+P +A G L G+I LA+ AY + + + P++
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233
Query: 466 LLAMNYINEGHDDK 479
+ I G ++
Sbjct: 234 ATIL--IEAGEFEE 245
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-------ERPMYAEAYCNMGVIYKNRG 239
P A A NL +V L YD AL EKA + P A A N+ +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 240 DLESAIACYERCLAVSPN 257
D + A+ E+ LA+
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+A ++ +A++ DP + A+ + Y+ G L +A +S+ +AL+ +P+
Sbjct: 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-------GD 100
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYE 215
VL + GT L G + +Q++ +A++ DP Y A + N G+ + +D A
Sbjct: 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A P E+ + +Y RG + A A ER
Sbjct: 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGS 440
P+ + +LNNL +V G D A E++EKA+ +P A A NNL LY G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 441 ISLAIDAYEQCLKIDPD 457
A++ E+ L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A A L + Y + + A E A +P A Y+ D A E Y+
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAG 439
ALS+ PN LNN G QG+ + A + E+A+A P Y ++ NLG+ AG
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAG 153
Query: 440 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475
A + ++ L++DP LA + G
Sbjct: 154 QFDQAEEYLKRALELDPQ--FPPALLELARLHYKAG 187
|
Length = 250 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 85/415 (20%), Positives = 140/415 (33%), Gaps = 46/415 (11%)
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E I +N + A A++ DP +A A G +Y G A + K
Sbjct: 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRK 81
Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGV 199
ALS Y VL L + L G Q + + D A G+
Sbjct: 82 ALSL--GYPKNQ-----VLPLLARAYLLQGKFQQVL-DELPGKTLLDDEGAAELLALRGL 133
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF- 258
Y L Q + A YE+A P A + + + A A + L P
Sbjct: 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193
Query: 259 ---------EIAKNNMAIALTDLGTKTYGRALLL--------FRLNGSNFQSPFFELVKL 301
++ N+ +AL Y +A+ L L ++ FE +
Sbjct: 194 DALLLKGDLLLSLGNIELAL-----AAYRKAIALRPNNIAVLLALATILIEAGEFEEAEK 248
Query: 302 EGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
D + + A HY A+ V + + ++ A + A P A
Sbjct: 249 HADALLKKAPNSPLA-----HYLKAL----VDFQKK-NYEDARETLQDALKSAPEYLPAL 298
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
G NL++A + L PN Q+ L + G++D A + A+
Sbjct: 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL 358
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475
+P A + LG Y G A + + ++DP+ NA L ++ +++G
Sbjct: 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE--NAAARTQLGISKLSQG 411
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (142), Expect = 2e-09
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 11/212 (5%)
Query: 38 AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGI-CLQMQN 96
A+ L + L+ +L + K+ +AL L E L D A + L
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 97 MGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
A + + +A++LDP + A A G L + GR EA E KAL +P A
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
L +LG G ++ ++ Y +AL++DP A A YNL ++ EL +Y+ AL
Sbjct: 205 ------LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258
Query: 214 YEKA-ALERPMYAEAYCNMGVIYKNRGDLESA 244
EKA L+ +Y + ++ + LE A
Sbjct: 259 LEKALELDPDLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 41/179 (22%), Positives = 65/179 (36%), Gaps = 14/179 (7%)
Query: 110 KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168
D A + Y ++G L A E+ KAL DP A LA+ L
Sbjct: 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----- 78
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---A 225
G + + AL ++P+ N G + +Y+ A+ +E+ A+E P+Y A
Sbjct: 79 --GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQ-AIEDPLYPQPA 135
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+ N G+ GD + A R L + P + + A Y A
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL--AELYYLRGQYKDARAYL 192
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQG 405
+P A A NNL ++ + + D+A+E + AL + P +++LNNL +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 406 KMDAAAEMIEKAIAANP 422
D A E +EKA+A
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
+ LE D + A++ + Q A DSF A+ L+P N + G +G+
Sbjct: 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY-EALKIDPHY 190
+A + + +A+ DP Y A L + G AG+ D +KY AL+IDP
Sbjct: 115 YEQAMQQFEQAIE-DPLY----PQPARSLENAGLCALKAGDF-DKAEKYLTRALQIDPQR 168
Query: 191 APAYYNLGVVYSELMQYDTALGCYEK 216
+ L +Y QY A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
EA + G A + + +A++LDP NA A+ + Y G+ EA E Y KA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
L DP A +LG + G ++ ++ Y +AL++DP+
Sbjct: 61 LELDPDN-------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-08
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDNLDKAVEC 379
A+A+ NLG A ++ +D AI YE A +P AEA NL + Y K + ++A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 380 YQMALSIKP 388
+ AL + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 313 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 372
KAL ++ A L + Y ++ + + A + A NP+ + NN G +
Sbjct: 55 DKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114
Query: 373 LDKAVECYQMALSIKPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429
++A++ ++ A+ P + Q SL N G+ G D A + + +A+ +P E+
Sbjct: 115 YEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173
Query: 430 NLGVLYRDAGSISLAIDAYEQ 450
L LY G A E+
Sbjct: 174 ELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCY 214
A L +LG +L G+ + I+ Y +AL++DP A AYYNL + Y +L Y+ AL
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 215 EKA 217
EKA
Sbjct: 62 EKA 64
|
Length = 69 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 41/144 (28%)
Query: 310 AYYKKAL--YYNWHYADAMYNLGVAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNN 362
YY+ + + YA+A+ N Y E LK D + + Y N
Sbjct: 37 VYYRDGMSAQADGEYAEALEN----YEEALKLEEDPNDRSYILY---------------N 77
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------D 408
+G+IY DKA+E Y AL + P +LNN+ V+Y +G+ D
Sbjct: 78 MGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFD 137
Query: 409 AAAEMIEKAIAANP-TYAEAYNNL 431
AAE ++AI P Y EA N L
Sbjct: 138 KAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390
A+A NLG Y D+A+E Y+ AL + PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A+A N+G Y G + A+ YE+ L ++PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-07
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
AEA N+G GD + AI YE+ L + P+ A N+A+A LG Y AL
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKD-YEEAL 58
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
LQ + A + +A++ DP AH Y+ G A ESY KALS P+
Sbjct: 46 LQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-- 102
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYD 208
VL + G L G ++ +Q++ AL DP Y + NLG+ + Q+D
Sbjct: 103 -----GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFD 156
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A ++A P + A + ++ GD A ER
Sbjct: 157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYD 208
LA L +L L+ G+ + ++ +AL++ P A A NL +Y L YD
Sbjct: 4 LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
Query: 209 TALGCYEKA 217
AL EKA
Sbjct: 64 EALEYLEKA 72
|
Length = 78 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------M 407
N+G+I+ KA+E Y AL P Q+LNN+ V+ +G+
Sbjct: 77 NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136
Query: 408 DAAAEMIEKAIAANPT-YAEAYNNL 431
D AAE ++AIA P Y EA N L
Sbjct: 137 DQAAEYWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G Y GD + A+ YE+ L + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390
AEA NLG Y + D+A+E Y+ AL + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
G D A +E A+A P AEA LG G ++ A L DPD
Sbjct: 10 AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 44/208 (21%), Positives = 70/208 (33%), Gaps = 36/208 (17%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A L + Y E + A +KA P AY + + Y+ G+LE A + R
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310
L ++PN NN YG L + G Q +
Sbjct: 91 ALTLNPNNGDVLNN------------YGT--FLCQQ----------------GKYEQAMQ 120
Query: 311 YYKKA----LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366
+++A LY A ++ N G+ + FD A + A +P E+ L +
Sbjct: 121 QFEQAIEDPLYP--QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSL 394
Y R A + ++SL
Sbjct: 179 YYLRGQYKDARAYLERYQQTYNQTAESL 206
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 33/183 (18%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
S A + L G+ + + +AL+ DP AY L + Y +L +
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ A + +A P + N G +G E A+ +E+ + P + A
Sbjct: 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYP----QPA 135
Query: 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAM 326
+L + G +A GD ++ Y +AL + +++
Sbjct: 136 RSLENAGL-CALKA----------------------GDFDKAEKYLTRALQIDPQRPESL 172
Query: 327 YNL 329
L
Sbjct: 173 LEL 175
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
A+A NLG Y G A++ YE+ L+++P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 28/142 (19%), Positives = 49/142 (34%)
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
+L+ A +L G + GN + + +A ++ P A+ LG
Sbjct: 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+L ++D A Y +A P N+G+ RGDLE A
Sbjct: 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202
Query: 260 IAKNNMAIALTDLGTKTYGRAL 281
+ N+A+ + G +
Sbjct: 203 RVRQNLALVVGLQGDFREAEDI 224
|
Length = 257 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 13/165 (7%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ Y +G +A ++ KAL DPSY A A LG LA + Y +
Sbjct: 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLAD------ESYRK 94
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRG 239
AL + P+ N G + + A+ +E+A L P Y ++ N+G+ G
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAG 153
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+ A +R L + P F + +A Y A L
Sbjct: 154 QFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPARLYL 196
|
Length = 250 |
| >gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 354 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409
P+CA A L + I+ ++ + KA E A + N Q+L LG++ T+ +
Sbjct: 297 PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356
Query: 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469
+ + ++A +P A+ G AG + A+ +CLK+DP AG +L +
Sbjct: 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415
Query: 470 NYINEGHDDKLFEAHRDWGKRFMRLYSQYT 499
Y + G DD + L SQ+
Sbjct: 416 TYYHTGIDDAIRLG--------DELRSQHL 437
|
Length = 553 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 37/162 (22%), Positives = 54/162 (33%), Gaps = 10/162 (6%)
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ + +AL+ DP Y A+ Y +L + D A Y KA
Sbjct: 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIAL-------TDL 272
P + N G +G E A+ +ER LA P + E + + L D
Sbjct: 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQ 157
Query: 273 GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK 314
+ RAL L L GD Y ++
Sbjct: 158 AEEYLKRALELDPQFPPALLE-LARLHYKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
AEA NLG Y G A++ YE+ L++DP+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 5/169 (2%)
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
L GD + +A +K+ + + G F A+ A P EA
Sbjct: 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW 137
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
N LG D+A Y+ AL + PN NNLG+ ++G ++ A ++ A +
Sbjct: 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469
+ NL ++ G A D Q N + A+
Sbjct: 198 PAADSRVRQNLALVVGLQGDFREAEDIAVQ-----ELLSEQAANNVAAL 241
|
Length = 257 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIAC 247
A YY G+ +Y AL YE+A LE +Y NMG+IY + G+ + A+
Sbjct: 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTK 275
Y + L ++P A NN+A+ G K
Sbjct: 95 YHQALELNPKQPSALNNIAVIYHKRGEK 122
|
Length = 172 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
GV+Y G A +A+A P E +N LG+ AG+ A +A++ L++DP
Sbjct: 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131
Query: 458 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 511
A NR +A+ Y G KL A D + Y D+ DP R L
Sbjct: 132 YNYAHLNRGIALYY---GGRYKL--AQDD----LLAFYQ-----DDPNDPFRSL 171
|
Length = 297 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 164 GTSLKLAGNTQDGIQKYYEALK--IDPHYAPAY--YNLGVVYSELMQYDTALGCYEKAAL 219
G S + G + +Q YYEA++ IDP Y +Y YN+G++++ ++ AL Y AL
Sbjct: 42 GMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALE-YYFQAL 99
Query: 220 ER-PMYAEAYCNMGVIYKNRGDLESAI 245
ER P +A NM VI RG E AI
Sbjct: 100 ERNPFLPQALNNMAVICHYRG--EQAI 124
|
Length = 168 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
A AY +G IY GD E A YE+ L + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDK 375
A A+ NL + + +D A+ E A +P A A NNL +Y + D+
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 376 AVECYQMALSIKPN 389
A+E + AL+++
Sbjct: 65 ALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
AEA N+G+ Y GD E A+ YE+ L + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
G +AAAE+ +A+ P +A + LG AG A AYE+ L++DP+
Sbjct: 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68
Query: 465 RLLAM 469
+L +
Sbjct: 69 KLAVL 73
|
Length = 287 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-RLAFDSFSEAVKLDP 113
N L + +A+ YE LE D N EA+ + A + +A++LDP
Sbjct: 10 GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
A AY LG +Y G A + YE+ L++DP++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
Y +AL++DP+ A AYYNL ++ L QYD AL
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421
L Y++ DKA+E Y+ L PN L L + GK A + +++ +A
Sbjct: 91 ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150
Query: 422 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH-DDKL 480
PT A Y L + R A A+ A++Q L ++PD+ A + + +L
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210
Query: 481 FEAHRDW 487
+ + D
Sbjct: 211 AKQYPDL 217
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
P A A N+ ++ + GD + A+ E+ L ++ A AL +L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLAR 54
|
Length = 78 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 375 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
+A+E Y+ AL ++ + S L N+G++Y G+ D A E +A+ NP A NN+
Sbjct: 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112
Query: 432 GVLYRDAGSIS--------------LAIDAYEQCLKIDPDSRNAGQNRL 466
V+Y G + A + ++Q +++ P++ QN L
Sbjct: 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
A A YNLG Y +L +YD AL YEKA
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKA 27
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422
L + D+A+ + AL+ P +++L LG QG++ AA ++ A+AA+P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 423 TYA 425
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
E A L R +LA+ + + E +G A
Sbjct: 65 EDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+A +L P + A G GR EA +Y +AL P E + +LG S
Sbjct: 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-----NE--PSIANNLGMS 177
Query: 167 LKLAGNTQD 175
L L G+ +D
Sbjct: 178 LLLRGDLED 186
|
Length = 257 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390
AEA NLG+ Y + ++A+E Y+ AL + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445
+ EKA+ +P AEAY NL +L + G A+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 75/328 (22%), Positives = 126/328 (38%), Gaps = 39/328 (11%)
Query: 2 AWVEKDVSNGRERDPVQDNGFLKGPQSLPGTSGSPVAVG--STLKGFEGKDALSYANILR 59
A +E E Q LK P+S S A L + + + A LR
Sbjct: 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLR 337
Query: 60 S-----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K ++ALA +E D +++I + A + F +A+KL+ +
Sbjct: 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ + H L+ +G +A + Y K++ DP + LG + G+
Sbjct: 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIA 450
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM----QYDTALGCYEKA-ALER---PMYAE 226
+ + K P AP YN Y EL+ ++D A+ ++ A LE+ PMY
Sbjct: 451 SSMATFRRCKKNFPE-APDVYNY---YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506
Query: 227 AYCNMG---VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283
+ +++ + D A E+ L + P +IA MA L G AL L
Sbjct: 507 VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD--EALKL 564
Query: 284 FRLNGSNFQSPFFELVKLEGDINQGVAY 311
F EL + EG++ Q ++Y
Sbjct: 565 FERAA--------ELARTEGELVQAISY 584
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSI 441
AL+++P+ + + N LG+ T G DAA E + + +PTY AY N G+ LY G
Sbjct: 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRY 148
Query: 442 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 501
LA D + DP+ R L + Y+ E D +A + +R+ +L + W
Sbjct: 149 ELAQDDLLAFYQDDPND----PYRALWL-YLAESKLDPK-QAKENLKQRYEKLDKEQWGW 202
Query: 502 D 502
+
Sbjct: 203 N 203
|
Length = 296 |
| >gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
AL Y A+L P E Y +GVI G+ A+ Y R LAV F AKNN+ +
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 270 TD 271
Sbjct: 61 EK 62
|
Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
AL Y + + A E LE D AH+ + Q LA +S+ +A+
Sbjct: 42 ALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L P N + G +GR EA + + +AL ADP+Y + L +LG A
Sbjct: 98 LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL-ADPAYGEP----SDTLENLGLCALKA 152
Query: 171 GNTQDGIQKYYE-ALKIDPHYAPA 193
G D ++Y + AL++DP + PA
Sbjct: 153 GQF-DQAEEYLKRALELDPQFPPA 175
|
Length = 250 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG-RLVEAAESY 139
N EA G L A +++ +A++LDP NA A+ + + Y G EA E
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 140 HKALSADP 147
KAL DP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
AEA NLG G AI+AYE+ L++DPD+ A N A+ Y+ G D +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL--ALAYLKLGKDYE 55
|
Length = 69 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
AL+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G
Sbjct: 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-GHDDKLFEAHRDWGKRFMRLYSQYTSW 501
LA D + DP+ R L + Y+NE D K +A + +R + + W
Sbjct: 151 LAQDDLLAFYQDDPND----PFRSLWL-YLNEQKLDPK--QAKTNLKQRAEKSDKEQWGW 203
|
Length = 297 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
AEA NLG+ Y G A++AYE+ L++DP+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 36/242 (14%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Q D A+ + + E P EA+ +G ++++RG+++ AI ++ L SP+ + +
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLL 108
Query: 266 AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL----EGDINQGVAYYKKALYYNWH 321
A L LG + Y A LL R F +LV EG + Q + Y+ W
Sbjct: 109 A--LQQLG-RDYMAAGLLDRAEDI-----FNQLVDEGEFAEGALQQLLNIYQAT--REWE 158
Query: 322 YA-----------DAMYNLGVA--YGEML-------KFDMAIVFYELAFHFNPHCAEACN 361
A Y + +A Y E+ D A + A + C A
Sbjct: 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
LG + + + KAVE + L P + S+ L L Y GK + +A+
Sbjct: 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278
Query: 421 NP 422
N
Sbjct: 279 NT 280
|
Length = 389 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNP 354
GD ++ + Y+KAL + A+A YNL +AY ++ K ++ A+ E A +P
Sbjct: 16 LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390
A A LG IY + ++A E Y+ AL + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
G+ A +++A+ ANP +EA LG Y G + A+ +E+ L +DP S N +
Sbjct: 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341
Query: 464 -NRLLAMN-Y---INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 504
LL +N Y I +G D +A+ RLY Q DNT
Sbjct: 342 WESLLKVNRYWLLIQQG--DAALKANNLAQAE--RLYQQARQVDNT 383
|
Length = 1157 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/66 (19%), Positives = 23/66 (34%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
++ + G EA E KAL A L +L G+ + ++ +
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71
Query: 183 ALKIDP 188
AL +
Sbjct: 72 ALALRE 77
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
A A+YNLG AY ++ K+D A+ +YE A NP+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAV 109
L+ A + +ALA E L + EA + G L Q GRL A A+
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQ--GRLAEAAALLRAAL 58
Query: 110 KLDPQNA 116
DP +
Sbjct: 59 AADPDDP 65
|
Length = 65 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 21/78 (26%), Positives = 32/78 (41%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+ A+ KAA P EA+ +G G + A Y + L ++PN NN+
Sbjct: 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174
Query: 266 AIALTDLGTKTYGRALLL 283
++L G LLL
Sbjct: 175 GMSLLLRGDLEDAETLLL 192
|
Length = 257 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGKMDAAAE 412
A L IY+ +KA++ + + + +Q L +D A E
Sbjct: 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
+++KA+ A+ A LG + G A++A E+ L+ +P+
Sbjct: 202 LLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246
|
Length = 389 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA 217
A A YNLG Y +L YD AL YEKA
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKA 27
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 424
+++L NLG Y GK D A E EKA+ NP
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 13/61 (21%), Positives = 18/61 (29%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
L + AG+ + + AL P A A LG + A A
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 222 P 222
P
Sbjct: 62 P 62
|
Length = 65 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
+M+A +E + NP AE ++ LG Y G S A+ AY L++ D+
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI 192
|
Length = 287 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.93 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.92 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.88 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.85 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.85 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.85 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.84 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.84 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.84 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.83 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.83 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.83 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.82 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.76 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.75 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.75 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.71 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.69 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.62 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 99.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.58 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.56 | |
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.53 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 99.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 99.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.5 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 99.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.48 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 99.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 99.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 99.44 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 99.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.43 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 99.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.4 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 99.4 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 99.39 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 99.38 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 99.37 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 99.37 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 99.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 99.36 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.35 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 99.35 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 99.35 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 99.34 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 99.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.34 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 99.33 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 99.3 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 99.3 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.29 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.27 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 99.27 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 99.26 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 99.25 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 99.24 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 99.23 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 99.23 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.23 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 99.22 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 99.21 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.2 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 99.2 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 99.19 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 99.19 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.19 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 99.19 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 99.19 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 99.19 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 99.19 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 99.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.18 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 99.18 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 99.18 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 99.18 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 99.17 | |
| PLN00142 | 815 | sucrose synthase | 99.17 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 99.17 | |
| PLN02316 | 1036 | synthase/transferase | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 99.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.08 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.07 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.06 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 99.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.05 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 99.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.03 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 99.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.02 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 99.01 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 99.0 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 98.98 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 98.98 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.95 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 98.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.92 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 98.92 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 98.91 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 98.9 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.9 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.89 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 98.89 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.88 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.88 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 98.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.83 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.83 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.83 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.81 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 98.81 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.79 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 98.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.74 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.73 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 98.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 98.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.69 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.69 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.68 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 98.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.68 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.67 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 98.66 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 98.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.62 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.61 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 98.6 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.59 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 98.58 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.57 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.56 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.54 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.52 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 98.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.51 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.49 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 98.48 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.47 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.47 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 98.46 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 98.46 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 98.45 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.42 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.42 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 98.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.38 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.37 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 98.34 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.31 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.3 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 98.2 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.17 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.09 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 98.06 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 98.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.03 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.0 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.98 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.91 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.91 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.91 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.9 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.86 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 97.84 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.83 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.81 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 97.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.8 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.79 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 97.79 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.78 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.77 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 97.76 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 97.75 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.7 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 97.7 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.69 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.64 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 97.64 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.58 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.58 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 97.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.53 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 97.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.48 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 97.46 | |
| PLN02764 | 453 | glycosyltransferase family protein | 97.45 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.45 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.43 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.41 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.41 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.4 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.39 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.38 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.34 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.33 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 97.33 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 97.33 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.33 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.32 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.31 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.29 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 97.28 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.26 | |
| PLN00414 | 446 | glycosyltransferase family protein | 97.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.22 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 97.21 | |
| PLN02208 | 442 | glycosyltransferase family protein | 97.21 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 97.2 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 97.19 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 97.18 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 97.16 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.16 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 97.16 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 97.16 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 97.15 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 97.15 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 97.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.01 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 97.0 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.0 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 96.97 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.95 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 96.93 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.92 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 96.92 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 96.84 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 96.81 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.8 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 96.76 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.75 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.74 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.73 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 96.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.69 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 96.68 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.65 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.59 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.58 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.55 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.51 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 96.5 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.28 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.28 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.27 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.27 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.08 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 96.05 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.03 | |
| COG4370 | 412 | Uncharacterized protein conserved in bacteria [Fun | 96.02 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 96.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.92 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.91 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 95.79 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 95.79 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 95.77 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 95.76 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 95.72 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.62 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.6 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 95.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.43 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.4 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.18 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 95.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.99 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.98 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.97 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 94.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.94 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.93 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.8 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 94.79 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.69 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.68 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.61 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.55 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.54 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 94.51 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.37 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.35 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.31 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.27 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.13 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.07 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.99 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.87 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.72 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 93.69 | |
| PF05159 | 269 | Capsule_synth: Capsule polysaccharide biosynthesis | 93.53 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 93.52 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.44 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.39 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.36 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 93.29 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 93.19 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 93.02 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 92.89 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.86 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.81 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.81 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 92.72 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 92.6 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.59 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.55 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 92.53 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.48 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.41 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.34 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.07 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.99 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.96 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.7 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.64 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.46 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.23 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 91.16 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.96 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-159 Score=1252.32 Aligned_cols=838 Identities=40% Similarity=0.586 Sum_probs=790.3
Q ss_pred CCCCCCCCccCCCccCCCCCCCCCCCCCccccCCCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 9 SNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK 88 (944)
Q Consensus 9 ~~~~g~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (944)
....++.....+.|.+..+......... ......+.-++.+-.+|+++..+|++++|+.+|+.++++.|++.++|.++
T Consensus 79 ~t~~~~llll~ai~~q~~r~d~s~a~~~--~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inl 156 (966)
T KOG4626|consen 79 PTNTERLLLLSAIFFQGSRLDKSSAGSL--LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINL 156 (966)
T ss_pred CCcccceeeehhhhhcccchhhhhhhhh--hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhH
Confidence 3446677777788887776554443322 22234455677888899999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH
Q 002273 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (944)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (944)
|.++...|+.+.|.++|.++++++|+...+...+|.++..+|+..+|..+|.++++..|... .+|.++|..+.
T Consensus 157 a~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA-------iawsnLg~~f~ 229 (966)
T KOG4626|consen 157 AAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA-------IAWSNLGCVFN 229 (966)
T ss_pred HHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee-------eeehhcchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999754 45889999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (944)
.+|+...|+..|+++++++|+..++|++||.+|...+.+++|+.+|.+++...|+++.++.++|.+|+.+|..+-|+..|
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 249 ERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYN 328 (944)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 328 (944)
+++++..|+.++++.+++.++.+.|.. .+|..+|.+++.+.|.++++.++
T Consensus 310 kral~~~P~F~~Ay~NlanALkd~G~V------------------------------~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKDKGSV------------------------------TEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHhccch------------------------------HHHHHHHHHHHHhCCccHHHHHH
Confidence 999999999999999999998776655 99999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (944)
||.+|.++|++++|..+|.++++..|+.+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCCh-----HHHHHH
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEA 483 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ 483 (944)
.|+++|.++++.+|..++++.+||.+|...|+..+|++.|+.+|+++||.++++.|++.++.++.+|.+ +++.+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 788888
Q ss_pred HHHHH--HHHhhhc----------------------------------cCCCCCCCCCCCCCCcEEEeecCCCccCcHHH
Q 002273 484 HRDWG--KRFMRLY----------------------------------SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSY 527 (944)
Q Consensus 484 ~~~~~--~~~~~~~----------------------------------~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~ 527 (944)
+++|. .++.+.. +++..|++-+.+++||||||||+||.+||+++
T Consensus 520 vrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Sh 599 (966)
T KOG4626|consen 520 VRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSH 599 (966)
T ss_pred HHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHH
Confidence 88887 3433322 34667788888899999999999999999999
Q ss_pred HHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHhCCccEEEecCCCCCCCchhh
Q 002273 528 FIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM 607 (944)
Q Consensus 528 ~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~ 607 (944)
||+.++.+||+++||||||+.+++++. .||.++.++++||+|+++++...+|.+|++|+|||||.|.|||.|+|.++
T Consensus 600 lmqsv~gmHdr~kveVfcYals~~d~t---~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarnei 676 (966)
T KOG4626|consen 600 LMQSVPGMHDRSKVEVFCYALSVNDGT---NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEI 676 (966)
T ss_pred HhccCcCcCCccceEEEEEEeecCCCc---hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccce
Confidence 999999999999999999999876543 39999999999999999999999999999999999999999999999999
Q ss_pred hccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCC--------CCCCCCCCCCCC
Q 002273 608 MACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALT 679 (944)
Q Consensus 608 ~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~--------~~~~~~~~~~~~ 679 (944)
||+|||||||+|+|||+|||.++|||+|||.++.|++....|+|||++||+||+|+++.+ ...|.++.++++
T Consensus 677 fAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp 756 (966)
T KOG4626|consen 677 FALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLP 756 (966)
T ss_pred eeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999876 667889999999
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+|.|||||||+++||+|.++++|++||++||||+||+++.|+.++ ++++..++++|++++||+|.+-.. .++|+++
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~va~-k~eHvrr 832 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSPVAA-KEEHVRR 832 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeeccccc-hHHHHHh
Confidence 999999999999999999999999999999999999999998665 889999999999999999999877 5999999
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 839 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r 839 (944)
+.++||+|||++|+|+||++|.||||||+|||||+++++||++|+|.++|++++|+++.+||+++||+|++|.+.|+++|
T Consensus 833 ~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 833 GQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccc
Q 002273 840 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVS 892 (944)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (944)
.++|..+..||+||..+|+..||++|.+||.+||.|++|.++|++.+|+...+
T Consensus 913 ~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 913 AKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHHhccccCcCC
Confidence 99999999999999999999999999999999999999999999998876543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-104 Score=836.53 Aligned_cols=547 Identities=30% Similarity=0.486 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-H
Q 002273 307 QGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM-A 383 (944)
Q Consensus 307 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 383 (944)
-++..+...+..++.++..+.. +...+...+....+.......+..+|++..+..+++......|....+...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3555555555667777765433 467777788888889999999999999999999999988887776666655555 7
Q ss_pred HhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 384 LSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 384 l~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
....|++......+ +.....+|+..++...++++.+..|.++.+...+.........+. ...|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~~t 198 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEAPT 198 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hccch
Confidence 88888887755555 888888899999999999999999998776666555533333332 23333
Q ss_pred ChhhhhhHHHH-----hhhccCCChHHHHHHHHHHHHHHhhhc---cCCCCCC-CCCCCCCCcEEEeecCCCccCcHHHH
Q 002273 458 SRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHSVSYF 528 (944)
Q Consensus 458 ~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~lriGy~S~d~~~h~v~~~ 528 (944)
+.....+..+. +.|+.+ ++..-.....+..+.+.... .+++.|+ +.+..++|+||||+|+|++.|+|+|+
T Consensus 199 nl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg~l 277 (620)
T COG3914 199 NLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGFL 277 (620)
T ss_pred HHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHHHH
Confidence 33222222211 222222 23333444455555554322 2344454 23345789999999999999999999
Q ss_pred HHhhhhhccCCcEEEEEEecc-ccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHhCCccEEEecCCCCCCCchhh
Q 002273 529 IEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM 607 (944)
Q Consensus 529 ~~~~l~~~d~~~fev~~y~~~-~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~ 607 (944)
+.+++++|||++|||++|+.+ +..|+.+.|++..+ .+|.++.+|++.++|++|+.|+||||||++|||..+|..|
T Consensus 278 ~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v 353 (620)
T COG3914 278 LRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQV 353 (620)
T ss_pred HHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhh
Confidence 999999999999999999998 56688888888877 5799999999999999999999999999999999999999
Q ss_pred hccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCCCCC-----CCCCCCCCC
Q 002273 608 MACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVC-----PTPALTNGF 682 (944)
Q Consensus 608 ~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~-----~~~~~~~~~ 682 (944)
||+|||||||||+|||+|||+|.|||||+|+++.||+++.+|+|+|+||| .||.|.+...++. ..++++++.
T Consensus 354 ~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp---~cy~p~d~~~~v~p~~sR~~lglp~~a 430 (620)
T COG3914 354 FAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLP---QCYQPVDGFEPVTPPPSRAQLGLPEDA 430 (620)
T ss_pred hhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhcc---cccCCCCCcccCCCCcchhhcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999 4677766544443 448999999
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhccc
Q 002273 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762 (944)
Q Consensus 683 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 762 (944)
+||||||+.+|++|+++++|++||++||||+|||+++| +++.++.+++..++++||+.+|++|+|..+ .++|+++|..
T Consensus 431 vVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~~~i 508 (620)
T COG3914 431 VVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRARYGI 508 (620)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHhhch
Confidence 99999999999999999999999999999999999876 678999999999999999999999999998 5799999999
Q ss_pred ccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002273 763 MDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 842 (944)
Q Consensus 763 ~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~ 842 (944)
+||+||||||+||||++|||||||||||+.|++|+||+|+||++++|++|+||.|+++||++||++++|.+.+++.|..+
T Consensus 509 ADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l 588 (620)
T COG3914 509 ADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAEL 588 (620)
T ss_pred hheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002273 843 RDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873 (944)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 873 (944)
++.+.+|||||++.|++.||.+|.+||.+|.
T Consensus 589 ~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 589 KRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999875
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-96 Score=797.17 Aligned_cols=351 Identities=45% Similarity=0.752 Sum_probs=284.7
Q ss_pred cEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCC-hhhHHHHHHHhhhCCceEeccCCC-HHHHHHHhHhC
Q 002273 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 588 (944)
Q Consensus 511 lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d-~~t~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 588 (944)
|||||||+||++|||++|+.+++++||+++|||+||+.++.++ ..+.+++ ..+++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~----~~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIR----AEADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHH----HHSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHH----HhCCeEEECccCCcHHHHHHHHHHC
Confidence 7999999999999999999999999999999999999886433 3444444 4468999999987 68999999999
Q ss_pred CccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCC--
Q 002273 589 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 666 (944)
Q Consensus 589 ~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~-- 666 (944)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995311
Q ss_pred --------------------------------------------------------------------------------
Q 002273 667 -------------------------------------------------------------------------------- 666 (944)
Q Consensus 667 -------------------------------------------------------------------------------- 666 (944)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCce
Q 002273 667 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 713 (944)
Q Consensus 667 ----------------------------~~~~-----~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~ 713 (944)
.+.| +.+...+|++|+|||||||+++||+|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0111 1133467899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 714 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
|||+..+. ..+.+++++++++||+++||+|.|..+ ..+|+.+|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99987653 345789999999999999999999876 78999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 794 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 794 ~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
++|+||+|+|+|+++||+||||.|+++||++|++|++|++.|+++|++||+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=373.03 Aligned_cols=433 Identities=26% Similarity=0.387 Sum_probs=305.4
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
+......+++|...++.|+|.+|++.+..+...+|.+.+.+..++.++++..++++....-..+++.+|...++|.++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 34556689999999999999999999988887777665555445555555455554444444444455544455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
++...|++++|+..|+.++++.|++.++ +.++|.++..+|+.+.|..+|.++++++|+...+...+|.++..+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida-------~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDA-------YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHH-------HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 5555555555555555555555544443 344444444444444555555555555554444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|+..+|..+|.++++..|..+-+|.+||-++..+|+...|+..|+++++++|+...++.+++.+|...+..+.+..-...
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 55555555555555444444444444554444455555555555555555555444555554444444433222111111
Q ss_pred hh-cCCC---CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 285 RL-NGSN---FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 285 ~~-~~~~---~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
.. ..+. ..-.++.+|..+|.++-|+..|+++++..|..++++.++|.++...|+..+|..+|.+++.+.|+.+++.
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 11 0111 1112333466678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
++||.+|.++|++++|...|+++++..|+.+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHHH
Q 002273 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 486 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (944)
...|+++|.+|+.++|...+++.| ++..|-..|+-.++...++.
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSN--LASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhh--HHHHhhccCCcHHHHHHHHH
Confidence 999999999999999999999999 56677788888777766553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=330.43 Aligned_cols=382 Identities=16% Similarity=0.172 Sum_probs=333.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+..+|..++..|+|++|+..|+++++..|+ +..+..+|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhH------------------------------HhHHHH-------------------
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAI------------------- 158 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~~~la~------------------- 158 (944)
.+|++++|+..|..+....+..... ...++.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766554332111 000111
Q ss_pred -------HHHHHHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 159 -------VLTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (944)
Q Consensus 159 -------~~~~lg~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (944)
.+..+|... ...+++++|++.|+++++. .|....++..+|.++..+|++++|+..|+++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 011111111 1236899999999999986 477888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCH
Q 002273 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDI 305 (944)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (944)
..+..+|.++...|++++|+..|+++++.+|++...+..++.++.. .|++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~------------------------------~g~~ 415 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI------------------------------KGEF 415 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------------------cCCH
Confidence 9999999999999999999999999999999999999988887655 4566
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|++.|+++++
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHH------HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 386 IKPNFSQS------LNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 386 ~~p~~~~~------~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+.|+.... +...+.+ +...|++++|+.+++++++++|++..++..+|.++...|++++|+.+|++++++.+..
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 99875332 2233333 3447999999999999999999999999999999999999999999999999998875
Q ss_pred hh
Q 002273 459 RN 460 (944)
Q Consensus 459 ~~ 460 (944)
.+
T Consensus 576 ~e 577 (615)
T TIGR00990 576 GE 577 (615)
T ss_pred HH
Confidence 54
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=345.40 Aligned_cols=430 Identities=19% Similarity=0.157 Sum_probs=373.0
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
|.++..+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34556777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
++...|++++|+..++++++.+|.+... +..++..+...|++++|+..++++++..|.+...+..+|.++...
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 8888888888888888888877776553 566777888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|++++|+..|+++++..|.++..+..++.++...|++++|+..|+++++..|++...+..++.++...++...+..+...
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887665554433
Q ss_pred hhcCCC----CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 285 RLNGSN----FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 285 ~~~~~~----~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
...... ....++.++...|++++|+..|++++...|++ ..+..++.++...|++++|++.++++++.+|++..++
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 322211 11234567888999999999999999999887 7788899999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
+.+|.++...|++++|++.|+++++..|+++.++..++.++...|+ .+|+.+++++++..|+++..+..+|.++...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 002273 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 485 (944)
+++|+++|+++++.+|+++.+..++ +..+...|+.+++.+..+
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 9999999999999999988877764 556777788777665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=329.89 Aligned_cols=417 Identities=21% Similarity=0.196 Sum_probs=216.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
+..+...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 33333444444444444444444444444444444444455555555555555554444444444445555555555555
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++..|++... +..++.++...|++++|+..++++++.+|.+...+..++.+|...|++++|+..+
T Consensus 518 A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555554444444332 3334444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC-CC---
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG-SN--- 290 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~-~~--- 290 (944)
+++++..|.+...+..+|.++...|++++|+..|+++++..|++...+..++.++...++...+.......... +.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 55555555555555555555555555555555555555555555555555555555554443332222211111 11
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
....+..++...|++++|+..++.+.+..|.+...+..+|.++...|++++|+..|++++...|++ ..+..++.++...
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHC
Confidence 111233444455555555555555555555555555555555555555555555555555555554 4455555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
|++++|++.++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+..+++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 6666666666666555565555666666666666666666666666666666555566666666666665 556666666
Q ss_pred HHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 451 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 451 al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
++++.|+++....+ ++..+...|+.+++.+
T Consensus 829 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 829 ALKLAPNIPAILDT--LGWLLVEKGEADRALP 858 (899)
T ss_pred HHhhCCCCcHHHHH--HHHHHHHcCCHHHHHH
Confidence 66666655554433 2333444455444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=332.05 Aligned_cols=441 Identities=18% Similarity=0.157 Sum_probs=351.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHHH----
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEA---- 84 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~~---- 84 (944)
..|.+....+.+|..++..|++++|+..++++++..+ +....
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 3466788899999999999999999999999865432 11100
Q ss_pred ----------------HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002273 85 ----------------HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148 (944)
Q Consensus 85 ----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 148 (944)
...+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 0134778889999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHH--hH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 149 YKPAA--EC-----LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (944)
Q Consensus 149 ~~~~~--~~-----la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (944)
+.... .. .......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 75421 11 112334568889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 222 PMYAEAYCNMGVI------------------------------------------YKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 222 p~~~~~~~~la~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
|.+..++..++.+ +...|++++|++.|+++++.+|++.
T Consensus 416 p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~ 495 (1157)
T PRK11447 416 PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV 495 (1157)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9988776655544 4457888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhc-CCCCCc---hhHHHhhhcCCHHHHHHHHHHHHHhCCCC----------HHH
Q 002273 260 IAKNNMAIALTDLGTKTYGRALLLFRLN-GSNFQS---PFFELVKLEGDINQGVAYYKKALYYNWHY----------ADA 325 (944)
Q Consensus 260 ~~~~~la~~l~~~~~~~~~~a~~~~~~~-~~~~~~---~~~~l~~~~~~~~~A~~~~~~al~~~p~~----------~~~ 325 (944)
..+..++.++...|+...+......... .+.... ....++...+++++|+..++++....... ...
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 8888888888887776555444433222 111111 12233455677777777766643221110 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
...++..+...|++++|+.+++ ..|.++..+..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|...|
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 3456667777777777777665 578899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh----hhhHHHHhhhccCCChHHHH
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----GQNRLLAMNYINEGHDDKLF 481 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a----~~~~~~~~~~~~~~~~~~~~ 481 (944)
++++|++.++++++..|++..++..+|.++...|++++|++.|++++...|+++.. ...+..+..+...|+.+++.
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999998876542 22223355667778888877
Q ss_pred HHHHHH
Q 002273 482 EAHRDW 487 (944)
Q Consensus 482 ~~~~~~ 487 (944)
+.++..
T Consensus 732 ~~y~~A 737 (1157)
T PRK11447 732 ETYKDA 737 (1157)
T ss_pred HHHHHH
Confidence 666543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=335.01 Aligned_cols=397 Identities=15% Similarity=0.093 Sum_probs=346.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH--------------H
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (944)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2345888999999999999999999999988664 677899999999999999999999999999887765554
Q ss_pred HH------------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 199 VV------------------------------------------YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 199 ~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
.+ +...|++++|++.|+++++.+|+++.+++.+|.+|.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC--------------CCCchhHHHhhhc
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS--------------NFQSPFFELVKLE 302 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~ 302 (944)
..|++++|+..++++++..|+++..++.++..+...++...+........... ......+..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999999999999999999888887777666544433322111000 0001234567788
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
|++++|+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998876 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 002273 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK--- 453 (944)
Q Consensus 383 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------~a~~~la~~~~~~g~~~eA~~~~~~al~--- 453 (944)
+++..|++...+..+|.++...|++++|+++|++++...|+++ .++..+|.++...|++++|++.|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999876543 4667789999999999999999999986
Q ss_pred hCCCChh
Q 002273 454 IDPDSRN 460 (944)
Q Consensus 454 l~P~~~~ 460 (944)
+.|..+.
T Consensus 743 ~~~~~p~ 749 (1157)
T PRK11447 743 ITPTRPQ 749 (1157)
T ss_pred CCCCCCC
Confidence 4444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-29 Score=301.60 Aligned_cols=365 Identities=11% Similarity=-0.018 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
...+...+..+..+|++++|+.+++.++...|++..+++.+|.+....|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (944)
..|++++|+..|+++++++|++... +..++.++...|++++|+..+++++...|++..++..++ .+...|++
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 7777777777777777777776554 555666677777777777777777777777777666554 36677777
Q ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 208 DTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
++|+..++++++.+|. .......++.++...|++++|+..|++++...|++...+..++.++...|+..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~---------- 263 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR---------- 263 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----------
Confidence 7777777777776542 33344455667777777777777777777777777766666666655544330
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (944)
....+|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 264 ----------------eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 264 ----------------EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred ----------------hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0001366677777777777777777777777777777777777777777777776667777777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
+...|++++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 77777777777777777766666666555566666667777777777777777666653 234456666
Q ss_pred HHHHHHhhCCCC
Q 002273 447 AYEQCLKIDPDS 458 (944)
Q Consensus 447 ~~~~al~l~P~~ 458 (944)
.|.++++..+..
T Consensus 396 ~~~~~~~~~~~~ 407 (656)
T PRK15174 396 ALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHhcCCc
Confidence 666666655444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-29 Score=300.04 Aligned_cols=364 Identities=20% Similarity=0.193 Sum_probs=311.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 456778999999999999999999999999996 7789999999999999999999999999999998765 77
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY----------------- 194 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~----------------- 194 (944)
.+|.++..+|++++|+..|..+...++. +...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 7888888999999998877665443322 11111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
..++..+ ...++|++|++.|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1235799999999999986 46778899999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 253 AVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 253 ~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
..+|++...+..++.++... |++++|+..|+++++.+|+++.+++.+|.+
T Consensus 359 ~l~P~~~~~~~~la~~~~~~------------------------------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLEL------------------------------GDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999998888876654 566999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
+...|++++|+..|+++++++|++...+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHH------HHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 002273 413 MIEKAIAANPTYAEAY------NNLGV-LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485 (944)
Q Consensus 413 ~l~~al~~~p~~~~a~------~~la~-~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 485 (944)
.|++++++.|+....+ ...+. ++...|++++|++.++++++++|++..++.. ++..+...|+.+++.+...
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 9999999998753322 22233 3445799999999999999999998876654 4666777888777665544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-29 Score=289.33 Aligned_cols=531 Identities=12% Similarity=0.055 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.+++..+.......|.+++++.+||.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44455555556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
.+|+++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877665555
Q ss_pred HHHhhh----ccC--------CChHHHH---HHHHHHHHHHhhhccCCCCCCCCCCCCCCc-EEEeecCCCccCcHHHHH
Q 002273 466 LLAMNY----INE--------GHDDKLF---EAHRDWGKRFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFI 529 (944)
Q Consensus 466 ~~~~~~----~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-riGy~S~d~~~h~v~~~~ 529 (944)
+--++- +.. |.+-... .....++.+ +...++ ..|.++. ||-++-..+..=-...++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~rIl~vi~sl~~GGAEr~~ 300 (694)
T PRK15179 229 LVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR------RNAEYD--AGPESFVGPVLMINGSLGAGGAERQF 300 (694)
T ss_pred HHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc------Cccccc--CCCCCCcceEEEEeCCCCCCcHHHHH
Confidence 432221 110 0000000 001111111 111112 2345667 788887666543333444
Q ss_pred HhhhhhccCCc--------------EEEEEEecccc--CChhhHHHHHHHhhhCCceEeccC------------------
Q 002273 530 EAPLVYHDYQN--------------YKVVVYSAVVK--ADAKTIRFREKVMKKGGIWRDIYG------------------ 575 (944)
Q Consensus 530 ~~~l~~~d~~~--------------fev~~y~~~~~--~d~~t~~~~~~~~~~~~~~~~~~~------------------ 575 (944)
..+..+.++.+ .+|+|.+.... .+.....++..-.. -++....+
T Consensus 301 ~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~--v~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (694)
T PRK15179 301 VNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIP--VSVYSDMQAWGGCEFSSLLAPYREYL 378 (694)
T ss_pred HHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCe--EEEeccCCccCcccccccchhhHHHh
Confidence 44555555543 35666543221 12333333321000 00111110
Q ss_pred --CC------HHHHHHHhHhCCccEEEecCCCCCC-CchhhhccCC--cceee-ecccCCCCCCCC--------------
Q 002273 576 --ID------EKKVAAMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQV-TWIGYPNTTGLP-------------- 629 (944)
Q Consensus 576 --~~------~~~~a~~i~~d~idilvdl~g~t~~-~~~~~~a~r~--ApvQ~-~~~G~p~t~g~~-------------- 629 (944)
++ -..+.+.|++.++||+.- |+.. +.++.++.+. .|+-+ ++-|+|......
T Consensus 379 ~~lp~~~~~~~~~L~~~lk~~kpDIVH~---h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~ 455 (694)
T PRK15179 379 RFLPKQIIEGTTKLTDVMRSSVPSVVHI---WQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELL 455 (694)
T ss_pred hhcchhHHHHHHHHHHHHHHcCCcEEEE---eCCcHHHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHH
Confidence 00 156888999999999963 3322 2334444433 35533 333333211100
Q ss_pred Cc--cEEEecCCCCCccc---ccccccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCHHH
Q 002273 630 TI--DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKV 698 (944)
Q Consensus 630 ~~--Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~--~K~~~~~ 698 (944)
.+ +.+|+.....-... -..-.+++..+|+..- .|.|.+.... ..-...++++.+++|++.++ .|..+.+
T Consensus 456 ~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~L 535 (694)
T PRK15179 456 KMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLW 535 (694)
T ss_pred hcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHH
Confidence 01 22333211000000 0112357777776421 1222111000 00012234566778888754 7999999
Q ss_pred HHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCccc
Q 002273 699 LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTT 777 (944)
Q Consensus 699 ~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t 777 (944)
+++++++++..|+.+|+|+|.+ ..++.+++..+++|+ .+||.|.|... +....|..+||++-|+.+ +.+++
T Consensus 536 I~A~a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL-~~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp~v 607 (694)
T PRK15179 536 VEAAQRFAASHPKVRFIMVGGG----PLLESVREFAQRLGM-GERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLPNV 607 (694)
T ss_pred HHHHHHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCC-CCcEEEcCCcc---hHHHHHHhcCEEEeccccccchHH
Confidence 9999999999999999999876 456788889999999 59999999854 566778889999888766 66999
Q ss_pred HHHhhhcCCcEEecCCCcccccchhH-HHhhcCCcccccC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 002273 778 TCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 852 (944)
Q Consensus 778 ~~eal~~gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v~~--~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~ 852 (944)
++|||+||+|||+ +++|+. -+-.-|...++.. | .+++.+...++..++.....+++..+++.. ..|
T Consensus 608 lLEAMA~G~PVVa-------t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~--~~F 678 (694)
T PRK15179 608 LIEAQFSGVPVVT-------TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS--ARF 678 (694)
T ss_pred HHHHHHcCCeEEE-------ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH--HhC
Confidence 9999999999999 666610 0111133344433 3 346666666666655555567777777654 349
Q ss_pred ChHHHHHHHHHHHH
Q 002273 853 DGQNFALGLESTYR 866 (944)
Q Consensus 853 ~~~~~~~~~e~~~~ 866 (944)
+++.+++.++++|+
T Consensus 679 S~~~~~~~~~~lY~ 692 (694)
T PRK15179 679 SLNQMIASTVRCYQ 692 (694)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999995
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-29 Score=296.36 Aligned_cols=366 Identities=13% Similarity=0.024 Sum_probs=327.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 58 LRSRNKFVDALALYEIVLEKD---SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
++++.+|+.-.-++...-+.. .++.......+..+...|++++|+..++..+...|+++.+++.+|.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 455666766655665554432 23455667778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++.+|++..+ +..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+
T Consensus 95 A~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999776 6778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
++++...|++...+..++ .+...|++++|+..++++++.+|... .....++.+
T Consensus 168 ~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~------------------------- 221 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT------------------------- 221 (656)
T ss_pred HHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH-------------------------
Confidence 999999999998887764 48899999999999999999876432 222223333
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
+...|++++|+..++++++.+|+++.++..+|.++...|++++ |+..|+++++.+|++..++..+|.++..
T Consensus 222 -----l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 222 -----LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred -----HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 3446778999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
.|++++|+..++++++++|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|++.|+
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHhhCCCChhh
Q 002273 450 QCLKIDPDSRNA 461 (944)
Q Consensus 450 ~al~l~P~~~~a 461 (944)
++++.+|++...
T Consensus 377 ~al~~~P~~~~~ 388 (656)
T PRK15174 377 HYIQARASHLPQ 388 (656)
T ss_pred HHHHhChhhchh
Confidence 999999998643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-28 Score=269.44 Aligned_cols=414 Identities=22% Similarity=0.294 Sum_probs=289.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
..|.+.-.++..|.+.+..|+|..|+.+|++++..+|. -++....+|.|+.++|+.+.|+..|.++++++|.+..++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 34557888999999999999999999999999999997 46788899999999999999999999999999999988888
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHcCCCChhHHhHHH------------------------------HHHHHHHHHHH
Q 002273 122 CGILYKDEG---RLVEAAESYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLK 168 (944)
Q Consensus 122 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la------------------------------~~~~~lg~~~~ 168 (944)
||.+-.... .+..+...+.++...++.++.+...++ ..++.+|.++.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 888766554 466788888888888888877654443 34678899999
Q ss_pred HcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHH
Q 002273 169 LAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLES 243 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~ 243 (944)
.+|++++|..+|.++++.++++ .-.++.+|++|...|+++.|+.+|+++++..|++.+....+|.+|...+ ..++
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999999999888 7788999999999999999999999999999999999999999998875 6788
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCC----CCCchhHHHhhhcCC-----------
Q 002273 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKT----YGRALLLFRLNGS----NFQSPFFELVKLEGD----------- 304 (944)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~----~~~a~~~~~~~~~----~~~~~~~~l~~~~~~----------- 304 (944)
|..++.++++..|.+..+|..++.++....... +..+......... .....++.++...|+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 899999999999999999998888776544332 1112211111111 111123334444444
Q ss_pred ---------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 305 ---------------------------------INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 351 (944)
Q Consensus 305 ---------------------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 351 (944)
++.|.+.|+..++.+|...+++..+|......++..+|...++.++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 44444555555555555555555554444444445555555555554
Q ss_pred hCCCCHHHHHHHHHHHHHC------------------------------------------------CCHHHHHHHHHHH
Q 002273 352 FNPHCAEACNNLGVIYKDR------------------------------------------------DNLDKAVECYQMA 383 (944)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~------------------------------------------------g~~~~A~~~~~~a 383 (944)
.+..++.++..+|.++... +.+++|+++|.++
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 4444444443333322211 2345555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
++.+|.+..+-..+|.++...|++.+|+.+|.++.+...++..+|.++|.||..+|+|..|++.|+.+++..-
T Consensus 639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555444555666666666666666666666666665543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-27 Score=283.79 Aligned_cols=157 Identities=13% Similarity=0.019 Sum_probs=138.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
...+....++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..+
T Consensus 39 ~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 39 YRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH---------------------------------HHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLKL 169 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------------------------~~~lg~~~~~ 169 (944)
+.+ +++++|+..|+++++.+|++.+....++.. ...++.+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 776 999999999999999999999988777775 1223778889
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
++++++|+..+.++++..|.+......++.+|..
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999888776666555555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=249.90 Aligned_cols=379 Identities=18% Similarity=0.174 Sum_probs=315.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+-..|+.++.+|+|++||++|.++++..|+.+..|.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHc--------------------------------CCCChhHHhHHHH-----------------
Q 002273 128 DEGRLVEAAESYHKALSA--------------------------------DPSYKPAAECLAI----------------- 158 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~~~la~----------------- 158 (944)
.+|++++|+....-..-. .|.-+.+ ..++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~-~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA-TFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH-HHHHHHHhhccccccccccCCC
Confidence 999999987554321110 0100000 00000
Q ss_pred ----HHHHHHHHHHHcC---ChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 159 ----VLTDLGTSLKLAG---NTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKAA 218 (944)
Q Consensus 159 ----~~~~lg~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (944)
....-+.-....+ .|.+|...+.+..... ..+ +.++...|..++-.|++..|.+.|+++|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0000001111112 4555555555543321 112 5677778888899999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHH
Q 002273 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298 (944)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 298 (944)
+++|.....|..++.+|...++.++-...|.++.+++|+++..++..+.++.-+++
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q------------------------ 409 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ------------------------ 409 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH------------------------
Confidence 99999988899999999999999999999999999999999999999988777664
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+++|+.-|++++.++|++.-.+..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++
T Consensus 410 ------~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 410 ------YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred ------HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 379 CYQMALSIKPN------FSQSLNNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 379 ~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
.|.+++++.|. ++..+...|.+.. ..+++.+|+.++++|++++|....++..||.+..++|+.++|+++|+++
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998 5555555554433 4689999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 002273 452 LKIDPD 457 (944)
Q Consensus 452 l~l~P~ 457 (944)
+.+.-.
T Consensus 564 a~lArt 569 (606)
T KOG0547|consen 564 AQLART 569 (606)
T ss_pred HHHHHh
Confidence 887544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=286.97 Aligned_cols=408 Identities=13% Similarity=0.047 Sum_probs=306.9
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.++...-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35555666677778899999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
+...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++.+|++..++..++.++...+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN--------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999865 3456777788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHhCCCcHHHHHHH-------
Q 002273 206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYKN-----RGDL---ESAIACYERCLAVSPNFEIAKNNM------- 265 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~p~~~~~~~~l------- 265 (944)
+.++|+..++++.. .|... .....+..+... .+++ ++|++.++++++..|.++.....+
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998765 44321 122222233322 2334 789999999997654443321111
Q ss_pred HHHHHHhhhhhhhhHHHHHhhcCCC-CCc----hhHHHhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q 002273 266 AIALTDLGTKTYGRALLLFRLNGSN-FQS----PFFELVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEM 336 (944)
Q Consensus 266 a~~l~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~l~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 336 (944)
...+...++...+............ ... .+..++...|++++|+..|+++++.+|.+ ......++.++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 1223333433333322222221111 111 24556777777888888888777766654 34566666677777
Q ss_pred CChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPH---------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
|++++|+..++++....|. ...++..++.++...|++++|++.+++++...|++..++..+|.++
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888777776652 1345667777777788888888888888888888878888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
...|++++|++.++++++++|++..+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888888888888877888888888888888888888888888888776443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-27 Score=264.69 Aligned_cols=417 Identities=18% Similarity=0.187 Sum_probs=311.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.++.++.+|+.+..+|+|++|..+|.++++.++++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 44556666666666666666666666666666655 55566666666666666666666666666666666666666666
Q ss_pred HHHcC----CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHHHHH
Q 002273 126 YKDEG----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DPHYAPAYYN 196 (944)
Q Consensus 126 ~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 196 (944)
|...+ ..++|..+..++++..|.+.+++..++ .++ .+++...++..|..|+.. .+--++.+.+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la-------ql~-e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA-------QLL-EQTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH-------HHH-HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 65554 445566666666666666555533333 333 235555568888877744 3344778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 197 LGVVYSELMQYDTALGCYEKAALE-----RPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
+|..++..|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|+.+++.+|.+..++..++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999988765 222 2346788999999999999999999999999999999888887
Q ss_pred HHHHHhhhhhhhhHHHHH----hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH-----
Q 002273 267 IALTDLGTKTYGRALLLF----RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----- 335 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----- 335 (944)
......+....+...... ...++...+.++.++....++..|.+-|+..++... .++.+...||++++.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 554444443333222222 223333444556678888888888887777765432 456778888887764
Q ss_pred -------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 336 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 336 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (944)
.+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|+.+|.++.+...++.++|.|+|.||..+|+|-
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 409 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 409 ~A~~~l~~al~~~--p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
.|++.|+.+++.. .++.+++..||+++...|.+.+|.++..+++.+.|.++....|+.+.+.-
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 9999999999874 46689999999999999999999999999999999999999998765543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=272.15 Aligned_cols=410 Identities=13% Similarity=0.049 Sum_probs=333.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002273 68 LALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (944)
Q Consensus 68 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 147 (944)
+.++++ -...|-++........+....|+.++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666 5567778888888889999999999999999999998999999999999999999999999999999999999
Q ss_pred CChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (944)
Q Consensus 148 ~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 227 (944)
.+..+ +..++.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+..++++++..|++..+
T Consensus 81 ~~~~a-------~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 81 QNDDY-------QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152 (765)
T ss_pred CCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99775 567778888899999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhhhh---hh---hhHHHHH---h---hcCCC
Q 002273 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-----AKNNMAIALTDLGTK---TY---GRALLLF---R---LNGSN 290 (944)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~l~~~~~~---~~---~~a~~~~---~---~~~~~ 290 (944)
+..++.++...+..++|++.++++.. .|+... ....+.......... .+ .+++..+ . ...+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999998776 554211 111111111110000 01 1111111 1 11111
Q ss_pred CCchh-------HHHhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HH
Q 002273 291 FQSPF-------FELVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AE 358 (944)
Q Consensus 291 ~~~~~-------~~l~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 358 (944)
....+ ...+...+++++|+..|+++++..+..+ .+...+|.+|...|++++|+..|+++++.+|.+ ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 11111 1234577999999999999998864422 344457999999999999999999999988765 45
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
....++.++.+.|++++|++.++++.+..|. ...++..++.++...|++++|++.+++++...|+
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6778888899999999999999999998763 2457789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHH
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (944)
+..++..+|.++...|++++|++.++++++++|++..+... .++.++..++.+++....++..+
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 45567777777777666655543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-25 Score=232.06 Aligned_cols=390 Identities=21% Similarity=0.230 Sum_probs=322.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
...-.+++..+..|+|+.|+.+|.+++.++|.|...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHH---------HHH-cCC-------hHHHHHHHHHHHhhCCCC-
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKIDPHY- 190 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~---------~~~-~g~-------~~~A~~~~~~al~~~p~~- 190 (944)
+|+|++|+..|.+.++.+|++......++.++...... +.. .++ .+.+.....+.++.+|.+
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988777776665211000 000 000 001111111111111100
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHHHcCCHHH
Q 002273 191 -------------------------------------------------------------APAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 191 -------------------------------------------------------------~~~~~~la~~~~~~g~~~~ 209 (944)
......+|...+...++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 2234567888888889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~ 289 (944)
|++.|.++++++ .+...+.+.+-+|+..|.+.+.+....++++.......-+..++.++..+|..
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a-------------- 307 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA-------------- 307 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh--------------
Confidence 999999999998 77888888999999999999999888888887766666666677777666655
Q ss_pred CCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
+...++++.++.+|++++..... ..+.......++++...+...-++|.-..--...|..++.
T Consensus 308 ---------~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 308 ---------YTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred ---------hhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 66778999999999998876544 5566677788888888888888899888888888999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
.|+|.+|+..|.++++.+|+++..|.|.|.||.++|++..|+...+++++++|+...+|...|.++..+.+|++|.+.|+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChhhhhhHHHHhh
Q 002273 450 QCLKIDPDSRNAGQNRLLAMN 470 (944)
Q Consensus 450 ~al~l~P~~~~a~~~~~~~~~ 470 (944)
++++.+|++.++.....-++.
T Consensus 451 eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHH
Confidence 999999999887665444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-24 Score=255.38 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=155.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|. ...+..+|.++...|
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~G 556 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCC
Confidence 4444444443 444445555555555554432 2333344444555555555555554443333 223344455555555
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++++|+.+|+++++..|++......++.. ....|++++|+..|+++++.+
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~------------------------------l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQ------------------------------RYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHH------------------------------HHhCCCHHHHHHHHHHHHHhC
Confidence 55555555555555544443322221111 122356666666677666666
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|+ ..++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|++.|+++++.+|+++.+++++|.
T Consensus 607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 64 66666666666666777777777777766666666666666666666666677777777776666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.++++..++|+..
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 776677777777777777666666666666666666666666666666666666666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=223.22 Aligned_cols=362 Identities=20% Similarity=0.213 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
..+-..|+-++..|+|++|+++|.+++++.|+.+..|.+++.||...|++++.++...++++++|++..+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 4556778889999999999999999999999999999999999999999999999999999999998776 445
Q ss_pred HHHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCCHH-----HH-----------
Q 002273 163 LGTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYAP-----AY----------- 194 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~~~-----~~----------- 194 (944)
.+..+...|++.+|+.-. ++.++. .|.-+. .+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 555555556665555322 111111 111100 00
Q ss_pred ---------HHHHH--HHHHc---CCHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 002273 195 ---------YNLGV--VYSEL---MQYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (944)
Q Consensus 195 ---------~~la~--~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (944)
-.+.. -+... ..|.+|...+.+..... ..+ ..++...|..++-.|++..|.+.
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 01111 11111 24666666666554321 112 56788889999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY 327 (944)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 327 (944)
|++++.++|.+...+..++.+|.+..+. ++....|.++..++|+++++|+
T Consensus 349 ~~~~I~l~~~~~~lyI~~a~~y~d~~~~------------------------------~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSLYIKRAAAYADENQS------------------------------EKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhhhcc------------------------------HHHHHHHHHHHhcCCCCCchhH
Confidence 9999999999988888888887776655 8999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
..|.+++-++++++|+..|++++.++|++...+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHH
Q 002273 408 DAAAEMIEKAIAANPT------YAEAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~------~~~a~~~la~~~~-~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~ 480 (944)
++|++.|.+++++.|. ++..+...|.+.. -.+++..|++.+++|++++|....++..+ +..-+..+.-+++
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHH
Confidence 9999999999999998 5554544444332 34899999999999999999999888763 3344455555554
Q ss_pred HHH
Q 002273 481 FEA 483 (944)
Q Consensus 481 ~~~ 483 (944)
++.
T Consensus 557 iel 559 (606)
T KOG0547|consen 557 IEL 559 (606)
T ss_pred HHH
Confidence 443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-22 Score=241.65 Aligned_cols=414 Identities=12% Similarity=0.020 Sum_probs=258.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
..|..++..+..+.+.+++|++..|+..|+++++.+|.++.+...++.++...|+.++|+..+++++...|.....+..+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34457789999999999999999999999999999999965555888888999999999999999994444555555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
|.++..+|++++|++.|+++++.+|++... +..++..+...++.++|++.++++...+|.+... ..++.++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~ 180 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHH
Confidence 889999999999999999999999999775 4456777888899999999999999999985554 56666776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHhhh------
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA--IALTDLGT------ 274 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~l~~~~~------ 274 (944)
..++..+|++.++++++.+|++.+++..+..++...|-...|.+..++--.........+.... .-..+.+.
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 6788878999999999999999999999999999988888887765542211111111111000 00000000
Q ss_pred ---h-hhhhHHHHHh--h----cCCCCCc-------hhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Q 002273 275 ---K-TYGRALLLFR--L----NGSNFQS-------PFFELVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEM 336 (944)
Q Consensus 275 ---~-~~~~a~~~~~--~----~~~~~~~-------~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 336 (944)
. ....++.... . ..+.... .....+...+++.++++.|+.+.... +--..+....|..|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 0 0000000000 0 0011101 11223344455555555555544332 11233444455555555
Q ss_pred CChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------CCHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLN 395 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~ 395 (944)
++.++|+.+|++++.-.+ ........|...|...+++++|..++++..+..| +..++..
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 555555555555544331 1222234444455555555555555555544222 2233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|++.++.++.++|++..+...
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555555555555444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-23 Score=214.35 Aligned_cols=367 Identities=17% Similarity=0.162 Sum_probs=262.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGI 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 124 (944)
++--++-.|.++.+.|....|+..|..++...|-+-.+|..++.+... ++........-| .+...-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 344455566666666666666666666666666666666666555322 112222222222 22333345566
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
++....+.++++.-++..... .|.+... -...|.+...+.++++|+..|++..+.+|-..+-.-...++++-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 666666777777777776666 4544332 34455666667788888888888888777766666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.++-.+-.-+.+.+.+++.-.++...-+|..|...++.++|+.+|+++++++|....+|..+|.-+..+.+.
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-------- 380 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-------- 380 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc--------
Confidence 666555555556666777777777778888888888888888888888888888888888877776666554
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
..|++.|+++++++|.+-.+|+.+|.+|.-++...=|+-+|+++++..|+++..|..|
T Consensus 381 ----------------------~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 381 ----------------------HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred ----------------------HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~~a~~~la~~~~ 436 (944)
|.||.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 88888888888888888888888777778888888888888888888888888887 34555667777888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 002273 437 DAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~ 457 (944)
+.+++++|..+..+++.-++.
T Consensus 519 k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 519 KMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hhcchHHHHHHHHHHhcCCch
Confidence 888888888877777666444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=235.86 Aligned_cols=307 Identities=19% Similarity=0.266 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
..+..+|..|.. +-+..+|+..|++.-...++. +.++.++|..|+.+++|++|.++|+.+-+..|-..+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-------~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-------GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655544 446678999999855555544 34688999999999999999999999999999876666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 274 (944)
-....++..+.+--+--.+.+.+++.+|+.++.|..+|.+|..+++++.|+++|+++++++|++..++..+|.-+..
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--- 467 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--- 467 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh---
Confidence 66666777776655555566778889999999999999999999999999999999999999988777766654443
Q ss_pred hhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354 (944)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 354 (944)
..++++|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|
T Consensus 468 ---------------------------~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP 520 (638)
T KOG1126|consen 468 ---------------------------TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP 520 (638)
T ss_pred ---------------------------hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc
Confidence 45669999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 355 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
.+..+...+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|+..+++..++-|+...+++.+|++
T Consensus 521 ~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 521 SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
|.+.|+.+.|+..|.-|+.++|.-.+
T Consensus 601 ~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999998655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=220.42 Aligned_cols=388 Identities=20% Similarity=0.232 Sum_probs=315.2
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------HhcCCCC----
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (944)
.++...+.+|++++-.|+|+.|..+...- +....+....+..+.|+....++++|...+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 57888999999999999999998887765 455567888899999999999999998888732 1111111
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHH----------------------
Q 002273 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI---------------------- 158 (944)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---------------------- 158 (944)
....+..|.+|..+.+.++|...|.+++..++...++...+..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 2345677888999999999999999999888766554333322
Q ss_pred ----------------------------------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 159 ----------------------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 159 ----------------------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
++...+..++...++.+..+..+..++.+|-+...+-..-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 1122344556666777777777777777777666554444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
-++...|+..+-...-.++++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...|..+...+..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh--- 362 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH--- 362 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH---
Confidence 47777777777666667777777888888888888888888888888888888888888888888888776665544
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (944)
++|+..|..+.+..|....-...+|.-|...++++-|.++|.+++.+.|.++-
T Consensus 363 ---------------------------dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl 415 (611)
T KOG1173|consen 363 ---------------------------DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL 415 (611)
T ss_pred ---------------------------HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
++..+|.+.+..+.|.+|+.+|++++..-+ .....+.+||.++.+++++++|+.++++++.+.|.++.++..+
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asi 495 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASI 495 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 999999999999999999999999984321 2345789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|.+|..+|+++.|+++|.++|.++|++..+..-
T Consensus 496 g~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 496 GYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 999999999999999999999999999665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=208.94 Aligned_cols=390 Identities=20% Similarity=0.172 Sum_probs=300.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-------------------HHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-------------------RLAFDSFSE 107 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------------------~~A~~~~~~ 107 (944)
.....+.+|..++....|+.|.-.++.... ....+..-.+.+..|.. ...+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345678899999999999999888887644 22222222222222211 112222222
Q ss_pred HHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (944)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (944)
-++. ...++..++..|.++.+.|...+|+..+..++...|-+..+|..+..+.... +.....
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~--------------e~~~~l 217 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI--------------EILSIL 217 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH--------------HHHHHH
Confidence 2221 2345778899999999999999999999999999999988866554433221 122222
Q ss_pred HhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 184 LKIDP--HYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 184 l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
...-| .+.-.-+.++.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-...
T Consensus 218 ~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 218 VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch
Confidence 21223 33444566788888888889999888888887 7888888888899999999999999999999998886554
Q ss_pred HHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 261 AKNNMAIALTDLGTKT----YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336 (944)
Q Consensus 261 ~~~~la~~l~~~~~~~----~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 336 (944)
-.-.+..++.-..... .+..+.......+..-.-++..|...++.++|+.+|+++++++|....+|..+|.-|..+
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh
Confidence 4444444443333211 111111112222333334666777888999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 416 (944)
++...|++.|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|.+..|+++..|..||.||.++++.++|+++|.+
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 417 al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
++.....+..++..||.+|.++++.++|..+|++.++..
T Consensus 458 ai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 458 AILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999999843
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=233.96 Aligned_cols=296 Identities=19% Similarity=0.204 Sum_probs=229.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh
Q 002273 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (944)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~ 173 (944)
.+-+..+|+..|.+.-+..++...++..+|..|+++++|++|..+|+.+-+..|-..+....+..++..+ .+-
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-------q~~ 403 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-------QDE 403 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-------Hhh
Confidence 3445567777777755666666777777777777777777777777777777776655544444444443 222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
-+---+.+..++.+|+.++.|..+|++|.-+++++.|+++|+++++++|....+|..+|.=+....++++|..+|++++.
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 22223345566677888888888888888888888888888888888888788888888888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 254 VSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333 (944)
Q Consensus 254 ~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 333 (944)
.+|.+..+|+.+|.+|.+.++. +.|.-.|++|++++|.+..+...+|.++
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~------------------------------e~Ae~~fqkA~~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKL------------------------------EFAEFHFQKAVEINPSNSVILCHIGRIQ 533 (638)
T ss_pred CCchhhHHHHhhhhheeccchh------------------------------hHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence 8888888888888888765543 7788888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 413 (944)
.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|+..+++..++-|+...+++.+|.+|.+.|+.+.|+..
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCHH
Q 002273 414 IEKAIAANPTYAE 426 (944)
Q Consensus 414 l~~al~~~p~~~~ 426 (944)
|.-|.+++|.-..
T Consensus 614 f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 614 FSWALDLDPKGAQ 626 (638)
T ss_pred hHHHhcCCCccch
Confidence 8888888886544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=202.23 Aligned_cols=334 Identities=20% Similarity=0.222 Sum_probs=262.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
+..+.+++..+.+|..++.+|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 45556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh---HHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (944)
.|.+++++|++++|...|+++++.+|++..... .++. .+......+...|+...|+......+++.|-++..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 999999999999999999999999997554322 2221 23445556777899999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
+...+.+|...|+..+|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+-. +.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk----lk 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK----LK 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH----HH
Confidence 99999999999999999999999999999999999999999999999999999999999999997654322211 11
Q ss_pred hhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELA 349 (944)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a 349 (944)
+. .+.+. -..-....++|.++++..++.++.+|..+. ....+..++...+++-+|+..+.++
T Consensus 268 Kv--~K~le------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 268 KV--VKSLE------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HH--HHHHH------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 00 00000 001133455666666666666666665332 3334455566666666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH
Q 002273 350 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393 (944)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 393 (944)
+.++|++..++...+..|+....|+.|+..|++|.+.++++..+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 66666666666666666666666666666666666666665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-21 Score=230.78 Aligned_cols=396 Identities=13% Similarity=0.020 Sum_probs=313.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
.-..|..+...+..+.+..+.|+++.|+..|+++++.+|+++.+...+..++...|+.++|+.++++++ +|.+....
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~- 103 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSR- 103 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHH-
Confidence 446788999999999999999999999999999999999996554488889999999999999999999 55444431
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (944)
.+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.+
T Consensus 104 ----~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL 178 (822)
T PRK14574 104 ----GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYL 178 (822)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHH
Confidence 244457788899999999999999999999999999999999999999999999999999999985554 566777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc---------hhHHHhh-----
Q 002273 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS---------PFFELVK----- 300 (944)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~l~~----- 300 (944)
+...++..+|++.++++++.+|++...+..+..++...|....+..+..... .-+.. ..+....
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHHHHHHHHHHHhhcccc
Confidence 7678888789999999999999999999999999988887644443332211 11100 0011110
Q ss_pred ---hcC---CHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 002273 301 ---LEG---DINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVI 366 (944)
Q Consensus 301 ---~~~---~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 366 (944)
... -.+.|+..++..+...+.. ..+....-.++...|++.++++.|+.+.... +--..+....|..
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 011 2356777788877743332 2345566678889999999999999987665 3345688889999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCH
Q 002273 367 YKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---------------TYA 425 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---------------~~~ 425 (944)
|...++.++|+.+|++++.-.+ ........|...|...+++++|..++++..+..| +..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 9999999999999999988653 2333457888899999999999999999998443 446
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
++...++.++...|++.+|.+.+++.+...|.|...... .+-.+...|.+..+.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~--~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIA--LASIYLARDLPRKAEQ 471 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHH
Confidence 888899999999999999999999999999999887765 3445555555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=226.73 Aligned_cols=323 Identities=17% Similarity=0.164 Sum_probs=265.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIY 235 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 235 (944)
.+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ...+..+|.+|
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999999999999999999999998854332 35788999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
...|++++|+..|+++++..|.+..++..++.++.. .|++++|++.++++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~------------------------------~g~~~~A~~~~~~~ 167 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ------------------------------EKDWQKAIDVAERL 167 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH------------------------------hchHHHHHHHHHHH
Confidence 999999999999999999988888888877776655 45669999999999
Q ss_pred HHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Q 002273 316 LYYNWHYA-----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390 (944)
Q Consensus 316 l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 390 (944)
++..|.+. ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 99887653 3567899999999999999999999999999999999999999999999999999999999998876
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHh
Q 002273 391 -SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469 (944)
Q Consensus 391 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~ 469 (944)
..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++.+|++..........+
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 467889999999999999999999999999998654 489999999999999999999999999999875442211111
Q ss_pred hhccCCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcEEEeecCCCccC
Q 002273 470 NYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 523 (944)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h 523 (944)
.....|...+.+...+++.++... +.|. ...-.+|+++..+..+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~---~~p~-------~~c~~cg~~~~~~~~~ 370 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLK---RKPR-------YRCRNCGFTARTLYWH 370 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHh---CCCC-------EECCCCCCCCccceeE
Confidence 121244555666555544433322 2122 2344566666655443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-22 Score=224.02 Aligned_cols=304 Identities=19% Similarity=0.205 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.... ....++.
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~ 111 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---QRLLALQ 111 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---HHHHHHH
Confidence 4456667888888899999999999999999988888999999999999999999999888874322211 1234567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----EAYCNMGVIYK 236 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 236 (944)
.+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 7788888888888888888888877777777888888888888888888888888877766542 23445666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al 316 (944)
..|++++|+..|+++++..|
T Consensus 192 ~~~~~~~A~~~~~~al~~~p------------------------------------------------------------ 211 (389)
T PRK11788 192 ARGDLDAARALLKKALAADP------------------------------------------------------------ 211 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCc------------------------------------------------------------
Confidence 66666666666666655544
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (944)
+...++..+|.++...|++++|++.+++++..+|.+ ..++..++.+|...|++++|+..++++++..|+.... .
T Consensus 212 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~ 286 (389)
T PRK11788 212 ----QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-L 286 (389)
T ss_pred ----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-H
Confidence 445566777888888888888888888888887766 4567888999999999999999999999999987544 8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLK 453 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~--~g~~~eA~~~~~~al~ 453 (944)
.++.++.+.|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 899999999999999999999999999987655445444422 4588888887776664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-21 Score=218.12 Aligned_cols=387 Identities=15% Similarity=0.134 Sum_probs=288.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....++..|+.++.+|++++|..++.++++++|.+..+|+.+|.+|.++|+.+++...+-.|-.++|++.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVY 201 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 201 (944)
.++|++++|+-+|.++++.+|.+... ......+|.+.|+...|+..|.++++..|.. .......+..+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 5666777888899999999999999999832 22334457778
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH-----HHHHHHh
Q 002273 202 SELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNM-----AIALTDL 272 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l-----a~~l~~~ 272 (944)
...++-+.|++.++.++... ....+.+..++.++.....++.|.......... .+++...-..- -..+...
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 88888899999999998833 234456778899999999999998887665441 11111100000 0000000
Q ss_pred hhhhhhhHHHHHhhcCCCCCc---hhHHHhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 273 GTKTYGRALLLFRLNGSNFQS---PFFELVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
+. .....+.. .+.-+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.+|..
T Consensus 371 ~~-----------~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 371 GK-----------ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred CC-----------CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 00 00000000 001112223334444443332222223 3567888888888888888888888888
Q ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 002273 349 AFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---- 423 (944)
Q Consensus 349 al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---- 423 (944)
+....+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.++....-++.
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 8876543 36788888888888888888888888888888888888888888888888888888888876633322
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 424 -----YAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 424 -----~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
.......+..++...|+.++=+..-...
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2345677778888888887754444333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=207.36 Aligned_cols=270 Identities=18% Similarity=0.172 Sum_probs=222.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (944)
..+.+.|+++.|++.+.-.-+.+... ..+-.+|..+++.+| ++..|.++...++.++..++.++.+.|.+.+..|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 34556666666666655433333221 223344544444432 566666666677777777777888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC
Q 002273 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH 321 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~ 321 (944)
++|.+.|+.++..+.....+.++++..+.. .|++++|+++|-++-.+--+
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~------------------------------~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEA------------------------------LGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHH------------------------------hcCHHHHHHHHHHHHHHHHh
Confidence 888888888888877777777777666544 45669999999999888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
++++++.++.+|..+.+..+|+++|.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+..-.||..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-+..|++.+...-
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=203.02 Aligned_cols=437 Identities=17% Similarity=0.122 Sum_probs=339.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
.+..+...+..+-+-+..+.+|.-|+-+-+++.... .++.-.+.+|++++..+++..|......- +++..+....+..
T Consensus 11 ~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~ 88 (611)
T KOG1173|consen 11 ADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLA 88 (611)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHH
Confidence 344566777777778899999999999999998887 78888999999999999999998777654 5667788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHH------HHcCCCC---------hh---HHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a------l~~~p~~---------~~---~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (944)
+.++....++++|...+... +..++.+ .. .....+.+++..|.+|....+.++|...|.+++
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 99999999999999888732 1112221 11 122334456678899999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHc-----------------CCHHHHHHHHHHHHH----------hC--------CCCHHHHH
Q 002273 185 KIDPHYAPAYYNLGVVYSEL-----------------MQYDTALGCYEKAAL----------ER--------PMYAEAYC 229 (944)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~-----------------g~~~~A~~~~~~al~----------~~--------p~~~~~~~ 229 (944)
..++.+.++...+-....-. +...+-++.+-++.. .. .++.+...
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 99988877665543322211 111111111111110 11 13567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh--hHHHHHhhcC--CCCCchhHHHhhhcCCH
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG--RALLLFRLNG--SNFQSPFFELVKLEGDI 305 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~--~a~~~~~~~~--~~~~~~~~~l~~~~~~~ 305 (944)
..+..++..+++.+..+..+..++.+|-+...+....-++..+++...- .........+ .-.+-..+-.|...+++
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 8999999999999999999999999998877665544467666654211 1111111111 12222344566677999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.+|..+|.++..++|....+|...|..+...|+.++|+..|..|-++-|....-...+|.-|...++++-|.++|.+|+.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----T---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~---~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+.|.++-++..+|.+.+..+.|.+|..+|++++..-+ + -...+.+||.++.+++.+++|+.+|+++|.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999995422 1 23468999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhccCCChHHHHHH
Q 002273 459 RNAGQNRLLAMNYINEGHDDKLFEA 483 (944)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~~ 483 (944)
..++.. .+..|...|..+.+.+.
T Consensus 489 ~~~~as--ig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 489 ASTHAS--IGYIYHLLGNLDKAIDH 511 (611)
T ss_pred hhHHHH--HHHHHHHhcChHHHHHH
Confidence 998877 45556666777666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=205.62 Aligned_cols=413 Identities=15% Similarity=0.127 Sum_probs=325.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (944)
+++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...++..... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566666778888889999999999999998888888999999999999999999999999999988 77777666665
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCH
Q 002273 124 I-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 124 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 191 (944)
. |+.+.+.+++++.+..+++.... .......+..+..+|.+|..+ ....++++.++++++.+|.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 5 45567999999999999998542 222233455566666665432 234689999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.+.+.++.-|..+++.+.|+...+++++. ..+++.+|..++.++...+++.+|+.....++...++|.........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 55678999999999999999999999999999998885443333322222
Q ss_pred HhhhhhhhhHHHH-----Hh------h--cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh-------------------
Q 002273 271 DLGTKTYGRALLL-----FR------L--NGSNFQSPFFELVKLEGDINQGVAYYKKALYY------------------- 318 (944)
Q Consensus 271 ~~~~~~~~~a~~~-----~~------~--~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~------------------- 318 (944)
.+++......... +. . ...........+.....+..+|++.++++...
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 2222211111000 00 0 00000000011111122333333333333221
Q ss_pred --CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH
Q 002273 319 --NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 391 (944)
Q Consensus 319 --~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 391 (944)
.|.. ...|...+..+...++.++|..++.++-+++|..+..|+..|.++...|+.++|.+.|..++.++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 1111 246778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~--~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.+.|+.++|.++|..++++.+.+|.
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999888888 999999999999999999999999999999999999999999998874
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=191.93 Aligned_cols=327 Identities=16% Similarity=0.162 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 456788899999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYY------------NLGVVYSELMQYDTALGCYEKAALERP 222 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p 222 (944)
-...|.++.++|.+++|..-|...++.+|++. +++. .....+...|++..|++...+++++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 56678888899999999999999999999642 2222 233445567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
-++..+...+.+|...|+..+|+.-++.+-++..++.+..+.++.++...|..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~--------------------------- 239 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA--------------------------- 239 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH---------------------------
Confidence 99999999999999999999999999999999999988888888887776654
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
+.++...++.++++|++...+-.. .+..+..+.++..+ -..+.++|.++++..++
T Consensus 240 ---~~sL~~iRECLKldpdHK~Cf~~Y----KklkKv~K~les~e------------------~~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 240 ---ENSLKEIRECLKLDPDHKLCFPFY----KKLKKVVKSLESAE------------------QAIEEKHWTECLEAGEK 294 (504)
T ss_pred ---HHHHHHHHHHHccCcchhhHHHHH----HHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHH
Confidence 888888888888888865433221 11111111111111 11233455555555555
Q ss_pred HHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 383 ALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 383 al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.++.+|..+. ....+..|+..-+++.+|+..+.++++.+|++.+++...+.+|.....|+.|+..|++|.+.++++
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 5555555322 223344455555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhh
Q 002273 459 RNAGQ 463 (944)
Q Consensus 459 ~~a~~ 463 (944)
..+..
T Consensus 375 ~~~re 379 (504)
T KOG0624|consen 375 TRARE 379 (504)
T ss_pred HHHHH
Confidence 54443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=198.77 Aligned_cols=248 Identities=20% Similarity=0.161 Sum_probs=229.6
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (944)
.++..|..+...++..+..++.++.+.|.+.+..|++++|.+.|++++..+..-.++++++|..+..+|+.++|+++|-+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 251 CLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 330 (944)
Q Consensus 251 al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 330 (944)
.-.+--++......++.+|..+... .+|++++-++...-|+++.++..+|
T Consensus 550 lh~il~nn~evl~qianiye~led~------------------------------aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDP------------------------------AQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCH------------------------------HHHHHHHHHhcccCCCCHHHHHHHH
Confidence 8888788888888888877665544 9999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410 (944)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (944)
.+|-+.|+-.+|.+++-......|-+.+..-.||..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
.+.|+..-...|++.+.+..|.++.-.+|-. +|.++-.
T Consensus 680 ~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 680 FDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 9999999999999999999999988888753 3444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-19 Score=194.17 Aligned_cols=371 Identities=14% Similarity=0.053 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.|+.-|..+.+.+-++-|+.+|..+++..|.....|...+..-..-|..++-..++++++...|.....|.+.+..+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 34444444444455555555555555555544444444444444444444444445555554454444444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (944)
|+...|...+.++++.+|++.+. ++..-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.++
T Consensus 598 gdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEE 669 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHH
Confidence 55555555555555555444332 222222333344445555555444443332 3344444444444445555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~ 289 (944)
|+.+++++++..|.....|..+|+++..+++.+.|.+.|...++..|.....|..++.+-..
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk------------------ 731 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK------------------ 731 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH------------------
Confidence 55555555555555555555555555555555555555555555555444444444433222
Q ss_pred CCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
.|..-+|...++++.-.+|++...|.....+-.+.|+.++|...+.++++..|.+...|..-..+.-.
T Consensus 732 ------------~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 732 ------------DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred ------------hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 22334555555555555555555555555555555555555555555555555544444433333333
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
-++-.+++ .|++....++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.|.
T Consensus 800 ~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 800 PQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33322222 22233344455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhCCCChhhh
Q 002273 450 QCLKIDPDSRNAG 462 (944)
Q Consensus 450 ~al~l~P~~~~a~ 462 (944)
++....|.+...+
T Consensus 876 ~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 876 KCETAEPTHGELW 888 (913)
T ss_pred HHhccCCCCCcHH
Confidence 5555555554433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=203.27 Aligned_cols=365 Identities=15% Similarity=0.121 Sum_probs=268.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...++..|+.++..|++++|...+.++++++|.++.+|+.||.+|.++|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 46778888889999999999999999999999999999999999999999999999999999999999875 66
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 236 (944)
.++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|++..|...|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777778888999999999999999999999999999999999999999999999999999831 123344577788
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK 314 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 314 (944)
..++-+.|++.++.++....+ ....+..++.++........+............- ..-.+.-....+-.+-...+..
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e-~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE-KDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC-CChhhhhhhhhccccccccccC
Confidence 888889999999999883322 2233444555554444332111111111000000 0000000000000000000000
Q ss_pred HHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CH
Q 002273 315 ALYYNWHYADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FS 391 (944)
Q Consensus 315 al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 391 (944)
--+..+ +..+ ...++.+..+.++..+++..+..--...+ +.++.+..++..|...|++.+|+.+|..+....+. +.
T Consensus 371 ~~~~s~-~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSY-DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCc-cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 000011 1122 44444445555555555544433322223 45889999999999999999999999999887654 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++.. +||
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D 513 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII--NPD 513 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCC
Confidence 7999999999999999999999999999999999999999999999999999999999887 444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-19 Score=183.61 Aligned_cols=384 Identities=14% Similarity=0.112 Sum_probs=319.4
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---------
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------- 112 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 112 (944)
...+.+.+.....+.++...++-+.|+....++.... ..+.....++..+..-++-.++.-.|...+...
T Consensus 91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 4455688889999999999999999998877654321 234555556666555555445544444443322
Q ss_pred ----------------------CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHH
Q 002273 113 ----------------------PQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (944)
Q Consensus 113 ----------------------p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 167 (944)
|..+..+ ..++.++....-+..+..++-.-....|++... +..+|.++
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~~ 242 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKCL 242 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhhh
Confidence 2222221 223444444445555556666666677777654 77888999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (944)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (944)
+..|++.+|+..|+++..++|......-..|.++...|+++.-.......+........-|+--+...+..++++.|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY 327 (944)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 327 (944)
-+++++.+|++..++...|.++..+++. ++|+-.|+.+..+.|...+.|.
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~------------------------------~~A~IaFR~Aq~Lap~rL~~Y~ 372 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERH------------------------------TQAVIAFRTAQMLAPYRLEIYR 372 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccch------------------------------HHHHHHHHHHHhcchhhHHHHH
Confidence 9999999999999999999888877766 9999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
.+..+|...|++.+|...-+.+++.-|.++..+..+| .++. .-.--++|.+.++++++++|....+-..+|.++...|
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999987 4443 3445689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.++.++..+++.+...|+ ...+..||.++...+.+++|.++|..|+.++|++..+...
T Consensus 453 ~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred ccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 999999999999999887 6789999999999999999999999999999998776554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=193.30 Aligned_cols=361 Identities=19% Similarity=0.175 Sum_probs=293.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
+-.....+...|+|++|++--.+..+++|.-+..|..+|..+.-+|+|++|+..|.+.++.+|++...+..++.++....
T Consensus 39 ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~ 118 (539)
T KOG0548|consen 39 YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY 118 (539)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH
Confidence 33455678889999999999999999999999999999999999999999999999999999999998888887763220
Q ss_pred ---------------------CHHHHHHHHHHHHHcCCCChhH-------------------------------------
Q 002273 131 ---------------------RLVEAAESYHKALSADPSYKPA------------------------------------- 152 (944)
Q Consensus 131 ---------------------~~~~A~~~~~~al~~~p~~~~~------------------------------------- 152 (944)
++-.....|.+.++..+.++..
T Consensus 119 ~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~ 198 (539)
T KOG0548|consen 119 AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA 198 (539)
T ss_pred HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence 0001111222222211111000
Q ss_pred ---------------------HhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 153 ---------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 153 ---------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (944)
....+.-...+|+..+...++..|++.|..++.++ .+...+.+.+-+|+..|.+.+++
T Consensus 199 ~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 199 EPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred CcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence 11123345678999999999999999999999999 88889999999999999999999
Q ss_pred HHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 212 GCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 212 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
....++++..... ......+|..|.+.++++.|+.+|++++..... + .+
T Consensus 278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~-------~~---------------- 333 (539)
T KOG0548|consen 278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-P-------DL---------------- 333 (539)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-H-------HH----------------
Confidence 9999988765432 234445677888899999999999998876544 1 11
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 364 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (944)
....+..++++...+...-.+|.-...-...|..++..|+|..|+..|.++++.+|+++..|.+.|
T Consensus 334 --------------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 334 --------------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 122234477777787777788888888888899999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 365 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
.+|..++.+..|+...+++++++|++...|...|.++..+.+|++|++.|+++++.+|++.++.-.+.+|+..+......
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ 479 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETP 479 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875444444
Q ss_pred HHHHHH
Q 002273 445 IDAYEQ 450 (944)
Q Consensus 445 ~~~~~~ 450 (944)
.+.+++
T Consensus 480 ee~~~r 485 (539)
T KOG0548|consen 480 EETKRR 485 (539)
T ss_pred HHHHHh
Confidence 555555
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-18 Score=184.58 Aligned_cols=389 Identities=13% Similarity=0.037 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
-+.|+..|..+-..|-.-.+..+...++...- +.-..|..-+..+.+.+-++-|...|..+++..|.....|...+.
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~ 558 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 34455555555555544444444444444321 223445555566666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
.-..-|..++-..++++++...|+.... +...+..+...|+...|...+.++++.+|++.++|+.--.+....
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pkae~l-------wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPKAEIL-------WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCcchhH-------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc
Confidence 6666666666666666666666654443 333344444556666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
.+++.|..+|.++....|. ..+|+.-+.+...+++.++|+..++++++..|+....|..++.++.++++.
T Consensus 632 ~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i--------- 701 (913)
T KOG0495|consen 632 DELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI--------- 701 (913)
T ss_pred ccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH---------
Confidence 6666666666666655443 455666666666666666666666666666666666666666655544433
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 364 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (944)
+.|.+.|...++..|.....|..++.+-.+.|+.-.|...++++.-.+|.+...|....
T Consensus 702 ---------------------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I 760 (913)
T KOG0495|consen 702 ---------------------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI 760 (913)
T ss_pred ---------------------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 365 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
..-.+.|+.++|.....+|++..|.+...|..-..+.-.-++-..++. |++....++.++...|.++....++++|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666555554444444444333333 3333345678889999999999999999
Q ss_pred HHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHH
Q 002273 445 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480 (944)
Q Consensus 445 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~ 480 (944)
.++|.++++++|++.+++..++ -.++..|..++.
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fy--kfel~hG~eed~ 870 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFY--KFELRHGTEEDQ 870 (913)
T ss_pred HHHHHHHHccCCccchHHHHHH--HHHHHhCCHHHH
Confidence 9999999999999999987643 334556655543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-16 Score=195.46 Aligned_cols=365 Identities=15% Similarity=0.091 Sum_probs=269.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...++.... | +...|..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 456677777778899999999999999987653 3444455566677889999999999887754 4 5678888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE 203 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 203 (944)
.+.+.|++++|...|+++.+...... ..++..+...|.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKAD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988654322 124677788889999999999999999876533 68899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 204 LMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
.|++++|+++|+++.+..- -+...|..+...|.+.|++++|.+.|+++... .|+ ...+..+...+.+
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k------- 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN------- 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH-------
Confidence 9999999999999976532 24778999999999999999999999999763 343 4556656555555
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPH 355 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 355 (944)
.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|+++|+++.+. .|+
T Consensus 592 -----------------------~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 592 -----------------------AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 455577777777766654 335566667777777777777777777776655 232
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 002273 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLG 432 (944)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~la 432 (944)
...|..+...|.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|++.|++..+. .|+ ...|..+.
T Consensus 649 -~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI 726 (1060)
T PLN03218 649 -EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALI 726 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 5566666677777777777777777766553 234556666777777777777777777766543 333 55666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 002273 433 VLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~ 453 (944)
..|.+.|++++|.+.|++..+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=173.58 Aligned_cols=383 Identities=18% Similarity=0.152 Sum_probs=296.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHH-HHhcC--CCC---
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN--- 115 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~--- 115 (944)
.-+-+|..+++...|+...+++..+++..|++...|.....++.+.- +-.+|...++. .+... |..
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 34567889999999999999999999999999999999888875432 22245444432 12111 100
Q ss_pred ----------HH-----------HHHHHHHH-HHHcCCHHHHHHH--------------------------------HHH
Q 002273 116 ----------AC-----------AHTHCGIL-YKDEGRLVEAAES--------------------------------YHK 141 (944)
Q Consensus 116 ----------~~-----------~~~~la~~-~~~~g~~~~A~~~--------------------------------~~~ 141 (944)
.. +....... -.+-|..+.|+.. |-.
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~n 165 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYN 165 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceee
Confidence 00 00000000 0111222222211 111
Q ss_pred HHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHH
Q 002273 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~ 211 (944)
+-.++|+.......+...++. .+++..++...|-......++.+ |. +......+|.+|+++|-+.+|.
T Consensus 166 lsRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Ae 243 (478)
T KOG1129|consen 166 LSRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAE 243 (478)
T ss_pred hhhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhH
Confidence 122333322222223333333 24555677777776666655542 11 2334467999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCC
Q 002273 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291 (944)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~ 291 (944)
+.++..++..|. ++.+..|+.+|.+..+...|+..+...++..|.+.......+.++..+++
T Consensus 244 kqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~----------------- 305 (478)
T KOG1129|consen 244 KQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ----------------- 305 (478)
T ss_pred HHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh-----------------
Confidence 999999998775 88999999999999999999999999999999998888888887766654
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 292 ~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
+++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.|++..+
T Consensus 306 -------------~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 306 -------------QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred -------------HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 372 NLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 448 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~ 448 (944)
+++-++..|++++.... .-.++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999999999998743 246799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhhhhhH
Q 002273 449 EQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 449 ~~al~l~P~~~~a~~~~ 465 (944)
..+-.+.|+-.+...|+
T Consensus 453 ~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 453 NAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHhhhhCccccccccce
Confidence 99999999988887774
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-18 Score=191.28 Aligned_cols=302 Identities=12% Similarity=0.006 Sum_probs=232.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNL 197 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 197 (944)
....|.+....|+++.|.+.+.++.+..|+.... +...+.+...+|++++|..++.++.+..|+.. .+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3455667777888888888888887777664432 44556777777888888888888888777764 455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 277 (944)
+.++...|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....+......+... ...+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~-a~~~---- 234 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK-AEIG---- 234 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHH----
Confidence 88888888888888888888888888888888888888888888888888888887754443322111110 0000
Q ss_pred hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 353 (944)
....+..+++.+.+.++.+..| +++.++..++..+...|++++|++.++++++..
T Consensus 235 ---------------------~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 235 ---------------------LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred ---------------------HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 0111122344556666666666 589999999999999999999999999999999
Q ss_pred CCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHH
Q 002273 354 PHCAEAC--NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEA 427 (944)
Q Consensus 354 p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--~al~~~p~~~~a 427 (944)
|++.... ..........++.+++++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+...
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~- 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND- 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-
Confidence 9987532 2233334446889999999999999999999 899999999999999999999999 57778887554
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+..+|.++.+.|+.++|.++|++++..
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 669999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-17 Score=198.72 Aligned_cols=419 Identities=14% Similarity=0.061 Sum_probs=335.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC 122 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 122 (944)
+...+......+...|++++|+.+|+.+....+ -+...+..+..++...++++.|...+..+.+. .| +...+..+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 344677777888999999999999999877543 36778888888899999999999999888764 34 56788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C-----------
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H----------- 189 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----------- 189 (944)
...|.+.|++++|.+.|++..+ |+. . .|..+...+.+.|++++|++.|+++.+... +
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~--~~~-~-------t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE--RNL-A-------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC--CCe-e-------eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 8999999999999999988753 321 1 367777788888999999999999876532 1
Q ss_pred -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 190 -----------------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 190 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|.+.|++++|++
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 23345667888999999999999998763 4567899999999999999999999
Q ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC-----CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC
Q 002273 247 CYERCLAVS-PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG-----SNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320 (944)
Q Consensus 247 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p 320 (944)
.|+++.+.. ..+...+..+..++.+.+....+..+....... ......+...|.+.|++++|.+.|++..+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 999987653 235567888888888888877666655443222 22344688899999999999999998754
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 397 (944)
.+...|..+...|.+.|+.++|+++|+++.+.. ..+...+..+...+...|+.++|.++|+...+..+ .+...|..+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 356789999999999999999999999998753 22467788888999999999999999999986532 235678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCCh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 477 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~ 477 (944)
..+|.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...+.. +.-.|...|..
T Consensus 469 i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~ 544 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQ 544 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCH
Confidence 99999999999999998864 2334 36789999999999999999999999999999998766543 45567778887
Q ss_pred HHHHHHHHH
Q 002273 478 DKLFEAHRD 486 (944)
Q Consensus 478 ~~~~~~~~~ 486 (944)
+++.+..+.
T Consensus 545 ~~A~~v~~~ 553 (697)
T PLN03081 545 AEAAKVVET 553 (697)
T ss_pred HHHHHHHHH
Confidence 776655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-17 Score=203.99 Aligned_cols=414 Identities=15% Similarity=0.095 Sum_probs=278.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEK--DSG----------------------------------NVEAHIGKGICL 92 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la~~~ 92 (944)
..|-.+...|.+.|++++|+.+|+++.+. .|+ +...+..+...|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 34555556666667777777776666553 222 223333344444
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhHHhHHHHHHHHHHHHHHHc
Q 002273 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLA 170 (944)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~ 170 (944)
.+.|++++|.+.|++... .+...|..+...|.+.|++++|++.|++..+.. |+... +..+-..+...
T Consensus 334 ~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ll~a~~~~ 402 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASVLSACACL 402 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHHHHHHhcc
Confidence 444444444444444321 223344444445555555555555555443322 22211 22222334445
Q ss_pred CChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (944)
|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555554422 2345666777778888888888888877543 345577778888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh-----cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL-----NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD 324 (944)
Q Consensus 250 ~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 324 (944)
++....+.+...+..+..++...|....++.+..... .+......+...|.+.|++++|...|+.. +.+..
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~ 555 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV 555 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence 8876555555666666666767666655555443322 22234446788999999999999999886 56788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVV 400 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 400 (944)
.|..+...|...|+.++|+++|++..+. .|+ ...+..+...+.+.|+.++|.++|+...+..+ .+...+..+..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999998875 344 55666777789999999999999999885432 235789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHH
Q 002273 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480 (944)
Q Consensus 401 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~ 480 (944)
+.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.|....+++++++|++...+. +++-.|...|..+++
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~--ll~n~ya~~g~~~~a 710 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCNLYADAGKWDEV 710 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHCCChHHH
Confidence 99999999999999886 35565 777888888889999999999999999999999876554 345567777776665
Q ss_pred HHHHH
Q 002273 481 FEAHR 485 (944)
Q Consensus 481 ~~~~~ 485 (944)
.+..+
T Consensus 711 ~~vr~ 715 (857)
T PLN03077 711 ARVRK 715 (857)
T ss_pred HHHHH
Confidence 54433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=201.86 Aligned_cols=401 Identities=13% Similarity=0.012 Sum_probs=330.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
.+...+..+...+...++++.|.+++..+.+..- .+...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~ 197 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIG 197 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHH
Confidence 4667788888888999999999999999887532 3678888999999999999999999998754 35667899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChh-HHhHH----------------------------HHHHHHHHHHHHHcCChHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKP-AAECL----------------------------AIVLTDLGTSLKLAGNTQD 175 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l----------------------------a~~~~~lg~~~~~~g~~~~ 175 (944)
.|.+.|++++|+..|++..+....... ....+ ..++..+...|.+.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999999875432111 11000 0124556788999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
|.+.|++.. +.+..+|..+...|.+.|++++|+++|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.
T Consensus 278 A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 278 ARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998763 4578899999999999999999999999997653 225678899999999999999999999999987
Q ss_pred C-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhc-CCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 002273 255 S-PNFEIAKNNMAIALTDLGTKTYGRALLLFRLN-GSNFQSPFFELVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGV 331 (944)
Q Consensus 255 ~-p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 331 (944)
. +.+...+..+...|.+.|+...+..+...... +...+..++..+...|+.++|++.|++..+... .+..++..+..
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 6 55677888999999999988776666544322 223344677889999999999999999987532 35677888999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 332 AYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409 (944)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 409 (944)
.+...|+.++|.++|+.+.+..+ .+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+++.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999986432 23568889999999999999999998864 2333 46679999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 410 A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
|...+++.+++.|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=187.94 Aligned_cols=301 Identities=12% Similarity=0.009 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYK 127 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 127 (944)
...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|..++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34455555555566666666666655555555555555555555556666666666666555555543 33444455555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYSE 203 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~ 203 (944)
..|++++|...+++..+..|+++.+ +..++.++...|++++|++.+.+..+....+..... ....-+..
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665555543 444445555555666566555555554332222111 11111122
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Q 002273 204 LMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 279 (944)
.+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~--------------- 302 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP--------------- 302 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH---------------
Confidence 2333333444555554444 355555555555555555555555555555555554321100
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-- 357 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 357 (944)
..........++.+++++.++++++..|+++
T Consensus 303 -----------------------------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 303 -----------------------------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred -----------------------------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 1111122223445556666666666666666
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 419 (944)
..+..+|.++.+.|++++|.++|+ ++++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666 45555565444 44666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=201.14 Aligned_cols=261 Identities=21% Similarity=0.203 Sum_probs=121.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
.++.++...|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5588888999999999999766544 488899999999999999999999999999999999988888888888 7999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++++|+.+++++.+..++ +..+.....+ +...++++++...++++....
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~l~~~l~~------------------------------~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-PRYLLSALQL------------------------------YYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------H-------------------------------HHHTT-HHHHHHHHHHHHH-T
T ss_pred cccccccccccccccccc-cchhhHHHHH------------------------------HHHHhHHHHHHHHHHHHHhcc
Confidence 999999999998876543 3333333333 444567799999999977654
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 320 --WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 320 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
+.++..+..+|.++.+.|+.++|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|.++..+..+
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999998763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=173.68 Aligned_cols=372 Identities=19% Similarity=0.233 Sum_probs=277.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....+|..+...+..++|.+.++..+++++..|++++.+...|..+...|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
....+|++|+++|+.|+.+.|+|... +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999775 67777777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 207 ~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
+..|....+...+.. |. ..+.......+..+.|.+++|++.+..--..--+........+
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka------------ 226 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA------------ 226 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH------------
Confidence 999999988877654 32 2334555666777788888887766553222111111111122
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHCA 357 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~ 357 (944)
.++...+++++|...|...+..+|++...+..+-.++..-.+.-++. ..|...-+..|...
T Consensus 227 ------------------~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 227 ------------------DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred ------------------HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 23555667799999999999999998888877777775333334444 44444433322210
Q ss_pred --------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------C-----------
Q 002273 358 --------------------------------EACNNLGVIYKDRDNLDKAVECYQMALSI-------K----------- 387 (944)
Q Consensus 358 --------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~----------- 387 (944)
.+...+-.+|. +.++. ..+++.+.. .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCccccccc
Confidence 00011111111 11111 122222211 1
Q ss_pred -CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 388 -PNFS--QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 388 -p~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
|-.+ ..++.++.-+...|+++.|..+++.|+...|+..+.+...|+++...|++++|..+++.+.++|-.|.
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 1111 24566777788888888888888888888888888888888888888888888888888888776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-16 Score=188.70 Aligned_cols=362 Identities=13% Similarity=0.048 Sum_probs=301.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRL 132 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~ 132 (944)
....+...|..++|..+|+.+.. .+...|..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|+.
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 34456778999999999987754 4578888889999999999999999999988653 3567899999999999999
Q ss_pred HHHHHHHHHHHHcCCC-ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHH
Q 002273 133 VEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTA 210 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 210 (944)
++|.+.|+++.+.... +.. .|..+...|.+.|++++|++.|+++.+..- -+...|..+...|.+.|++++|
T Consensus 489 d~A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999876432 222 477788889999999999999999976532 2477899999999999999999
Q ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 211 LGCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 211 ~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
.++|+++... .| +...+..+...|.+.|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 562 ~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~--------------- 625 (1060)
T PLN03218 562 FDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS--------------- 625 (1060)
T ss_pred HHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH---------------
Confidence 9999999763 34 46788889999999999999999999998876 345556666655544
Q ss_pred hcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHH
Q 002273 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNL 363 (944)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 363 (944)
+.|++++|+++|+++.+.. ..+...|..+...|.+.|++++|.++++++.+.. +.+...+..+
T Consensus 626 ---------------k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 626 ---------------QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred ---------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566799999999998763 2246789999999999999999999999999874 4467899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~la~~~~~~g~ 440 (944)
...|.+.|++++|++.|++..+.. ..+...|..+...|.+.|++++|+++|++..+. .|+ ...|..+...+.+.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Confidence 999999999999999999987642 234678999999999999999999999998765 354 6778888899999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 002273 441 ISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~ 457 (944)
+++|.+.+.+.++....
T Consensus 770 le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999886443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-17 Score=182.79 Aligned_cols=303 Identities=11% Similarity=0.007 Sum_probs=232.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l 197 (944)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566667788888888777765544222 221 13334555578888888888888888888877533 3345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKT 276 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~l~~~~~~~ 276 (944)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+..+.+......+- .++..+-..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~- 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ- 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-
Confidence 888888999999999999999999999999999999999999999999888888877665544322111 111111000
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (944)
.....+.+...+.++...+..|+++.+...++..+...|+.++|.+.++++++. +.+
T Consensus 239 ----------------------~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~ 295 (398)
T PRK10747 239 ----------------------AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYD 295 (398)
T ss_pred ----------------------HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC
Confidence 111223345555556655667789999999999999999999999999999994 445
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
+......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++.
T Consensus 296 ~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~ 372 (398)
T PRK10747 296 ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALD 372 (398)
T ss_pred HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Confidence 6555555544 44999999999999999999999999999999999999999999999999999985 55678999999
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 002273 437 DAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~ 455 (944)
+.|+.++|.++|++++.+.
T Consensus 373 ~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HcCCHHHHHHHHHHHHhhh
Confidence 9999999999999998864
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=198.01 Aligned_cols=260 Identities=21% Similarity=0.213 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHH
Q 002273 87 GKGICLQMQNMGRLAFDSFSEAVK-L-DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (944)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (944)
.+|.+++..|++++|++.+++.+. . .|+++..|..+|.+....+++++|+..|++++..++.+... +..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~-------~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD-------YERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccc
Confidence 345555555555555555543332 2 24445555555555555555555555555555544443332 22222
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ 242 (944)
.. ...+++++|+..++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++.+.|+.+
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 22 344555555555555544332 23444445555556666666666666554433 345555666666666666666
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
+|+..|+++++.+|++......++.++...|+ .+++.+.++...+..|.+
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~------------------------------~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGD------------------------------YDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH------------------------------HHHHHHHHHHHHHH-HTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC------------------------------hHHHHHHHHHHHHHCcCH
Confidence 66666666666666555555444444333222 244444444444444444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
+..+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|.++++++++
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455555566666666666666666666666666666666666666666666666666655543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-18 Score=197.86 Aligned_cols=195 Identities=17% Similarity=0.081 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
+++|+.+|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 344555555555555555555544444443221 24445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++++|++..+ ++.+|.++...|++++|+..++++++++|.+...+..++.+++..|++++|+..+
T Consensus 357 A~~~~~~Al~l~P~~~~a-------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 357 GSLLFKQANLLSPISADI-------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 555555555555544332 3334444444455555555555555555544444333444444444455555555
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002273 215 EKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (944)
Q Consensus 215 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (944)
+++++.. |+++..+..+|.++..+|++++|...++++....|........+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 4444432 34444444445555455555555554444444444433333333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=170.43 Aligned_cols=299 Identities=17% Similarity=0.098 Sum_probs=165.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
|.++....-+.-+..++-+-...-|+|...+..+|.+++..|++.+|+..|+++.-++|.+....-..|.++...|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 33333333444444455555555666666677777777777777777777777766677666666666666666666666
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
-.......+......... ++--+..++..++++.|+.+-+++++.+|.+..++...|.++...++.++|+-.|
T Consensus 285 ~~~L~~~Lf~~~~~ta~~-------wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASH-------WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HHHHHHHHHhhhhcchhh-------hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 666655555554333222 3333444445566666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
+.+..+.|...+.|..+..+|...|++.+|...-..+++..|.+..+...++ .++..-
T Consensus 358 R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d--------------------- 416 (564)
T KOG1174|consen 358 RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD--------------------- 416 (564)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---------------------
Confidence 6666666666666666666666666666666666666666555554443332 111100
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 373 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 373 (944)
..--++|.+++++.+.+.|....+...++.++...|.+++++.++++.+...|+ ...+..||.++...+.+
T Consensus 417 --------p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 417 --------PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEP 487 (564)
T ss_pred --------chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhH
Confidence 001144444444444444444444444444444444444444444444444433 22344444444444444
Q ss_pred HHHHHHHHHHHhhCCCC
Q 002273 374 DKAVECYQMALSIKPNF 390 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~ 390 (944)
++|.++|..|+.++|++
T Consensus 488 Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 44444444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=187.99 Aligned_cols=390 Identities=19% Similarity=0.186 Sum_probs=293.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (944)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (944)
+++...|...|-+++++++..+.++..+|.+|...-+...|.++|++|.++|+.+..+....+..|.+..+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (944)
.+-+..|.... ...+..+|..|...++..+|+..|+.++..+|.+...|..+|.+|...|+|..|++.|.++..+
T Consensus 551 ~~~qka~a~~~-----k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFAC-----KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHH-----HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 66665554322 2235558999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHH------------HHh---
Q 002273 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL------------LFR--- 285 (944)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~------------~~~--- 285 (944)
+|.+....+..+.+....|+|.+|+..+...+............++.++.+.........+. .+.
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887666666666666665544331111110 000
Q ss_pred ----------------------hcCCCCCch-hHHHhhh----cCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 286 ----------------------LNGSNFQSP-FFELVKL----EGDI------NQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 286 ----------------------~~~~~~~~~-~~~l~~~----~~~~------~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
...+.+... +..++.. .+.. --+.+++-..++... ++..|+++|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGin 784 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGIN 784 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHH
Confidence 000001110 0111111 0000 112233333332221 14557777766
Q ss_pred HHH--------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 333 YGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 333 ~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
|.+ +.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+.+...|.....|.|+|.++.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 655 1233467788888888887778888888777 5557777888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+++.|...|.++..++|.+...|...+.+....|+.-++...|...-++.-.
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 88888888888888888888888888888888888777777777775554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-18 Score=196.94 Aligned_cols=244 Identities=12% Similarity=-0.000 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (944)
++++|+..|+++++.+|+++.++..+|.+|... +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456777777777777777777777777665533 23666777777777777777777777777776677777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
+|+..|+++++++|++..++..++.++... |++++|+..++++++.+|.+
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~------------------------------G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMA------------------------------GQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHhcCCCC
Confidence 777666666666666665555555444332 23355555555555555555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
+..+..++.++...|++++|+..+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 4444444444444555555555555555443 444555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
...|+ +|...+++.++.......-...+..+|.-.|+.+.+..+
T Consensus 486 ~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 486 CQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 54442 444444444333221111122244444444554444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=187.51 Aligned_cols=259 Identities=20% Similarity=0.284 Sum_probs=198.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
+..|..+.+.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC
Q 002273 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p 320 (944)
-.+|+.++.+-+...|........ +.. ..+... .-......+....++|-.+....|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a--------~~~-------------~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSA--------GEN-------------EDFENT--KSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHHHHHHHHHHhCccchhcccc--------Ccc-------------ccccCC--cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999998887764321100 000 000000 000111123445566666666677
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 321 --HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398 (944)
Q Consensus 321 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 398 (944)
.++++...||.+|.-.|+|++|+.+|+.++..+|++...|+.||..+....+.++|+..|.+|+++.|.+..+++++|
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 578888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSIS 442 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~----------~~a~~~la~~~~~~g~~~ 442 (944)
..+..+|.|++|.++|-.||.+.+.. ..+|..|-.++...++.+
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 88888888888888888888775431 134444444444455444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=172.99 Aligned_cols=280 Identities=19% Similarity=0.250 Sum_probs=239.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC---CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSAD---PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+++..++...|-......++.. |.....-..--.--..+|.+|...|.+.+|.+.++.+++..| .++.+..|+.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 34556667777665555544432 211111000001135689999999999999999999999776 58899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
|.+..+...|+..+.+.++..|.+...+...++++..++++++|+++|+.+++.+|.+.++...++.-
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~------------ 333 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG------------ 333 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec------------
Confidence 99999999999999999999999999999999999999999999999999999999988776554443
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCA 357 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~ 357 (944)
+...++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++.... .-.
T Consensus 334 ------------------yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa 395 (478)
T KOG1129|consen 334 ------------------YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA 395 (478)
T ss_pred ------------------cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh
Confidence 34456679999999999999999999999999999999999999999999998743 237
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
++|+++|.+....|++.-|.++|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-...|+-.+..++++.+
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999988888877654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-16 Score=177.69 Aligned_cols=293 Identities=10% Similarity=-0.010 Sum_probs=142.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHH
Q 002273 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC-GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (944)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 165 (944)
..|......|++++|.+...+..+..+ ++..++.+ +......|+++.|..++.++.+..|++... .....+.
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~------~~l~~a~ 161 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP------VEITRVR 161 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH------HHHHHHH
Confidence 344444445555555544444333221 22222222 333355555555555555555554443221 0112244
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE--------AYCNMGVIYKN 237 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~ 237 (944)
++...|++++|+..+++..+.+|+++.++..++.+|...|++++|++.+.++.+..+.+.. ++..+......
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555444333222 11111111112
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
..+.+...+.++..-+..|+++.....++..+...| +.++|...++++++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g------------------------------~~~~A~~~L~~~l~ 291 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD------------------------------DHDTAQQIILDGLK 291 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHh
Confidence 222233333333333333444445444444443332 22555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 318 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 318 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
. +.++......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++. .+..+
T Consensus 292 ~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~L 367 (398)
T PRK10747 292 R-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWL 367 (398)
T ss_pred c-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHH
Confidence 2 2233322222222 236666666666666666666666666666666666666666666666666666643 34456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~ 420 (944)
+.++.++|+.++|.++|++++.+
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666666666666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-16 Score=176.67 Aligned_cols=372 Identities=16% Similarity=0.097 Sum_probs=298.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcC-----CCCHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKGI-CLQMQNMGRLAFDSFSEAVKLD-----PQNACA 118 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 118 (944)
..+.|..++..+...|.-..|+.+.++.+... |.+...+...+. |....+.+++++++..+++... --.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 56788999999999999999999999999988 777666655554 5567899999999999999842 123567
Q ss_pred HHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 002273 119 HTHCGILYKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (944)
Q Consensus 119 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (944)
+..+|.+|-.+ -...++++.++++++.+|.++.+ .+.++.-|..+++.+.|+....++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 88888877543 23568899999999999999875 677888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
..+++.+|..++.++...+++.+|+.+.+.+++..++|.........+-...++.++|+..+...+..-.....+...++
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 56688999999999999999999999999999999998887777777888899999999988877765432221111111
Q ss_pred HHHH---------Hhhhh-------hhhhHHHHHh--------------hcCCCC---------CchhHHHhhhcCCHHH
Q 002273 267 IALT---------DLGTK-------TYGRALLLFR--------------LNGSNF---------QSPFFELVKLEGDINQ 307 (944)
Q Consensus 267 ~~l~---------~~~~~-------~~~~a~~~~~--------------~~~~~~---------~~~~~~l~~~~~~~~~ 307 (944)
.... ...+. .+.......+ ....+. +......+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 0000 00000 0000000000 000000 0123356677888899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHh
Q 002273 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 385 (944)
Q Consensus 308 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 385 (944)
|..++.++-++.|..+..|+..|.++...|+..+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
++|.++++|+.+|.++.+.|+.++|.++|+.++++.+.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=187.06 Aligned_cols=266 Identities=21% Similarity=0.268 Sum_probs=219.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+...-|..|..++++|+..+|.-+|+.+++.+|+++++|..||.+....++-..|+..++++++++|+|..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~ 204 (944)
...|.-.+|..++.+-+...|........--...............+..-.+.|.++....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988764321000000000000001111223455667777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|+|++|+.+|+.++...|++...|..||-.+....+.++|+..|.+|+++.|.+..+++++|..+..+|.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---------- 513 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---------- 513 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A 342 (944)
|++|.++|-.++.+.+.. ..+|-.|-.++...++.|-+
T Consensus 514 --------------------ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 514 --------------------YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred --------------------HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 499999999999886541 13555555555555655543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=197.99 Aligned_cols=393 Identities=9% Similarity=-0.014 Sum_probs=319.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGI 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 124 (944)
+...+..+...|.+.|++++|.++|+++.+ .+...|..+...|.+.|++++|++.|+++.+. .|+. ..+..+-.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHH
Confidence 566677788899999999999999998743 46678999999999999999999999998764 3554 35555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
.+.+.|++++|.+.++.+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHC
Confidence 888999999999999999887554322 2467788889999999999999998654 3567899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
|++++|+..|+++....+.+...+..+-..+.+.|+.+.+.+.+..+++..- .+......+...|.+.|+...+..+..
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999876555667777788888899999999999998887643 234456677788888887766655544
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEAC 360 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 360 (944)
....+...+..++..+...|+.++|++.|++..+... .+..++..+...+.+.|+.++|.++|+.+.+.. ..+...|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 4322223344667788899999999999999887532 245567777788999999999999999998543 2246789
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...|..++.+|...|+
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999885 35555 67788887888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002273 441 ISLAIDAYEQCLKI 454 (944)
Q Consensus 441 ~~eA~~~~~~al~l 454 (944)
+++|.+..+...+.
T Consensus 707 ~~~a~~vr~~M~~~ 720 (857)
T PLN03077 707 WDEVARVRKTMREN 720 (857)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998877543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-17 Score=156.08 Aligned_cols=213 Identities=24% Similarity=0.249 Sum_probs=196.9
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.....++.+.+|..|+++|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
..++.+|++++|...|++++. +|.... .+..+.++|.|..+.|+++.|...|+++++.+|+.+.....++..++.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~-~P~Y~~----~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALA-DPAYGE----PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHh-CCCCCC----cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 999999999999999999986 344333 255689999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
.|+|-.|..++++.....+-..+.+.....+-...|+-+.+-.+=.+.....|...+.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999998888888888888899999999999998888888888887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=173.89 Aligned_cols=299 Identities=17% Similarity=0.141 Sum_probs=219.4
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..++.....+..++++.+|.+|+..|..+++..|+++..|...+.++...+++++|....++.++++|..+..+...+.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCHHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGVVYS 202 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~ 202 (944)
+...++..+|.+.++. ..+ + ....|+..+++.+..+ |....+...-+.++.
T Consensus 127 ~~a~~~~i~A~~~~~~--------~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKS--------KQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred hhhhHHHHHHHHHhhh--------hhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 9999999999888871 111 0 1223444444444332 444566677889999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHH
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~ 282 (944)
..|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+...+....
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~----------------- 243 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS----------------- 243 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh-----------------
Confidence 999999999999999999999999999999999999999999999999999999865432111
Q ss_pred HHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HH
Q 002273 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AE 358 (944)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 358 (944)
..|+....+..-|.-.++.|++.+|.+.|..++.++|++ +.
T Consensus 244 -----------------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 244 -----------------------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred -----------------------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 011112344455666666666666666666666666654 33
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
.|.+++.+....|+..+|+...+.++++++....++...|.++..++++++|.+.|+++++...
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555555555555555555555555555555555555555555555555555555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-16 Score=153.44 Aligned_cols=322 Identities=19% Similarity=0.191 Sum_probs=254.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 237 (944)
.|..+...++.++|+..|.++++.+|...++...||.+|...|..+.|+.+-+..++. |+. .-+...||.-|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 4566667799999999999999999999999999999999999999999998887664 432 3478899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
.|-++.|...|....+...--..+...+..+ |....+|++|++..++..+
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~I------------------------------YQ~treW~KAId~A~~L~k 169 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNI------------------------------YQATREWEKAIDVAERLVK 169 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHH------------------------------HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999877544444455444444 5556778999999999999
Q ss_pred hCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-H
Q 002273 318 YNWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-S 391 (944)
Q Consensus 318 ~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~ 391 (944)
..++. +..+..++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 88765 46788999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
++...|..+|.++|+.++.+..+.++.+..+. +++...++.+-....-.+.|..++.+-+...|+-...+.-.-+.++-
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 68899999999999999999999999998877 56666777777777778899999999999999854333211122222
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcEEEeecCCCccCcHH
Q 002273 472 INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVS 526 (944)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~ 526 (944)
..+|...+.+-..+....+..+..+ .=|.-++||-+.-|.+|.-+
T Consensus 329 aeeg~~k~sL~~lr~mvge~l~~~~----------~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQLRRKP----------RYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred ccccchhhhHHHHHHHHHHHHhhcC----------CceecccCCcceeeeeeCCC
Confidence 2333333333333333222222111 13566788888888777643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=170.40 Aligned_cols=232 Identities=18% Similarity=0.123 Sum_probs=157.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (944)
.++.+.++..+.+++...+-++. ..+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 45678888888888875554332 235568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+..|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++..... ..+
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~--~~l------------------- 174 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW--LYL------------------- 174 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHH-------------------
Confidence 99999999999999999999999999999999999999999999999987631111 000
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCHHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACN 361 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~ 361 (944)
....+++++|+..+++.....+.. .+. .+.++...|+..++ ..++.+. ++.|...++|+
T Consensus 175 ----------~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~ 240 (296)
T PRK11189 175 ----------AESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF 240 (296)
T ss_pred ----------HHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 122345677777776655433221 111 23444445554332 1222222 33334445555
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLG 398 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 398 (944)
++|.++...|++++|+.+|+++++.+| ++.+..+.+.
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 555555555555555555555555553 3344333333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-14 Score=146.86 Aligned_cols=400 Identities=15% Similarity=0.094 Sum_probs=322.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+...|+..|.--..++++..|..+|+++|..+..+...|+..+.+-++......|...+++++.+-|.--..|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44567777888888999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
..+|+...|.+.|++-++..|+.. + +......-.+.+..+.|...|++-+-.+|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-a-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-A-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-H-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 999999999999999999999843 2 344444455678899999999999988885 6788899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhhhhhhhhHH
Q 002273 207 YDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKTYGRAL 281 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~a~ 281 (944)
...|...|+++++.-.++. ..+...|..-..+..++.|.-.|+-+++.-|.+ ...+..+...-.+.|+..-.+..
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999999998755432 345556666777889999999999999999887 44444444444444543221111
Q ss_pred HHH----------hhcCCCCCc--hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHH-HHHcCCh
Q 002273 282 LLF----------RLNGSNFQS--PFFELVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGVA-YGEMLKF 339 (944)
Q Consensus 282 ~~~----------~~~~~~~~~--~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~-~~~~g~~ 339 (944)
... ..++.++.. .+..+....|+.+.-.+.|++++...|...+ .|.+.+.. -....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 111 112222222 4556777889999999999999988776332 23333221 2456789
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 340 DMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 415 (944)
+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+ ...-....+-.++++++....+|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998864 7788899999999999999999999999999984 455556667788999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 416 ~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
+.++..|.+..+|...|.+-..+|+.+.|...|+-|++...
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999987543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-16 Score=169.15 Aligned_cols=100 Identities=24% Similarity=0.345 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDP----HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
+..+.++..+.+++...+ ..+..++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455677777777775333 2356678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 247 CYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 247 ~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.|+++++++|++..++.+++.++.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888877777776655555554443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-16 Score=177.38 Aligned_cols=407 Identities=18% Similarity=0.181 Sum_probs=306.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------------HHhCCHHHHHHH
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLAFDS 104 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~~ 104 (944)
...++.+....+.|.+|...+..+....- +-+.+..+..|+ +...+...|...
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~-nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a 480 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSF-NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA 480 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhc-CchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45556666667777777777776665541 111111111111 234457889999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (944)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (944)
|-+++++++..+.++..+|.+|....+...|..+|++|.++++.+..+ ....+..|....+++.|......+-
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998776 4455666777899999999977777
Q ss_pred hhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 185 KIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 185 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+.+.|..+|.+|...|++..|++.|.++..++|.+....
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 766643 345667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhc----CCCCCchhH-------HHhhhcCCHHHHHHHHHHHHHhC--------CCCH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLN----GSNFQSPFF-------ELVKLEGDINQGVAYYKKALYYN--------WHYA 323 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~----~~~~~~~~~-------~l~~~~~~~~~A~~~~~~al~~~--------p~~~ 323 (944)
+..+.+....|+...+......... ....+..++ ..+...|-..+|..++++.++.. -++.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999988887655444322111 111222222 23344566677888888776541 1222
Q ss_pred HHHHHHHHHHHHc-----------------------CCh------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----
Q 002273 324 DAMYNLGVAYGEM-----------------------LKF------DMAIVFYELAFHFNPHCAEACNNLGVIYKD----- 369 (944)
Q Consensus 324 ~~~~~la~~~~~~-----------------------g~~------~~A~~~~~~al~~~p~~~~~~~~la~~~~~----- 369 (944)
..|..++.++.-. +.. --+.+++-..+++.. .+..|+++|..|+.
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHc
Confidence 2333333322111 100 112333333333222 25678888888775
Q ss_pred ---CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 370 ---RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 370 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
+.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.++|.++....+++.|..
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 2345689999999999999999999999998 667999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChhhhhhHHH
Q 002273 447 AYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 447 ~~~~al~l~P~~~~a~~~~~~ 467 (944)
.|.++..++|.+...+....+
T Consensus 872 af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHH
Confidence 999999999999887766433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=162.36 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=189.1
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
++...|++++|+..+++++...+... ....+..+|.++...|++++|...++++++.+|++...+..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999998543211 1234677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
|++++|+..++++++..|.+...+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999988889999999999999999999999988876654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-14 Score=156.09 Aligned_cols=415 Identities=13% Similarity=0.033 Sum_probs=281.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
...+++..-..+...|+|++|.+...+++...|++..++...-.++.+.++|++|+...++-......+ ...+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 347888888999999999999999999999999999999999999999999999996554433222222 2237899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------------------
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------------ 188 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------ 188 (944)
++++..++|+..++ ..++.+... +...+.+++++|+|++|+..|+..++.+.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 99999999999998 334443333 45566777788999999999988755422
Q ss_pred ------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCC
Q 002273 189 ------------H-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 189 ------------~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~ 240 (944)
+ ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 35678899999999999999999999995431 11 12367788999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh-h--hhhHHHHHhhcCCCCCc----------------hhHHHhhh
Q 002273 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-T--YGRALLLFRLNGSNFQS----------------PFFELVKL 301 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-~--~~~a~~~~~~~~~~~~~----------------~~~~l~~~ 301 (944)
.++|...|...++.+|.+.........-+..+... . ....+.........+.. ...-+...
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654332222211111110 0 00000000000000000 00111112
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 380 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 380 (944)
.+.-+.+.+...+.-...|...--.............+.+|++++....+.+|.. ..+...++.+...+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2233333333333222233322222222333333337899999999999999987 778888999999999999999999
Q ss_pred HHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 381 QMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 381 ~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
...++.. ...+.+-..+-..++..++-+.|...+.+++.- .+.....+..++....+.|+.++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 9443221 123444555556677777777777777777653 22223455567777788899999999
Q ss_pred HHHHHHhhCCCChhhhhhHHHHhhhc
Q 002273 447 AYEQCLKIDPDSRNAGQNRLLAMNYI 472 (944)
Q Consensus 447 ~~~~al~l~P~~~~a~~~~~~~~~~~ 472 (944)
.+++.++.+|++.++...+..++.++
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 99999999999999988887777665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=149.67 Aligned_cols=155 Identities=21% Similarity=0.174 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMA 383 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (944)
+.|.+.|+++++++|++.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|.++|+++
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 44444555555555555666667777777777777777777777764 3455677888888888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
++++|+++.....++..+++.|++-.|..++++.....+-..+.+....++-...|+-+.|-++=.+..+..|...+
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888888888888888888888888888888877777766777777777777888888777777777777777654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-15 Score=159.25 Aligned_cols=348 Identities=13% Similarity=0.123 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...++..+.-.+..++|.+.++..+..++..|++++.+...|..+..+|+-++|......++..++...- +|.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-------CwH 79 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-------CWH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch-------hHH
Confidence 3456667777788999999999999999999999999999999999999999999999999998888765 477
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (944)
-+|.++....+|++|+++|+.|+..+|+|..++..++.+..++++++.....-.+.++..|..-..|...+..+...|++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh
Q 002273 242 ESAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY 318 (944)
Q Consensus 242 ~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~ 318 (944)
..|...++...+.. |+....-......+.. . .....|.+++|++.+..--..
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n--~-----------------------i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQN--Q-----------------------ILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH--H-----------------------HHHHcccHHHHHHHHHhhhhH
Confidence 99999988877655 3322222122221111 1 144456667777766554433
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhhCCCCH------
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFS------ 391 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~------ 391 (944)
.-+........+.++.+++++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|...
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp 294 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP 294 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc
Confidence 33344566678999999999999999999999999999998888877775333333444 55555444433210
Q ss_pred -------HHHHHHHHHH---HHc-------------CCHHHHHHHHHHHHHh-----C--------------CCC--HHH
Q 002273 392 -------QSLNNLGVVY---TVQ-------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEA 427 (944)
Q Consensus 392 -------~~~~~la~~~---~~~-------------g~~~~A~~~l~~al~~-----~--------------p~~--~~a 427 (944)
+....+..++ .+. .+..+. ..+++.+.. . |-. ...
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 0000000000 001 111111 133333221 1 111 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++.++.-+...|+++.|..+...|+...|.-.+-+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 67789999999999999999999999999876655
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=171.94 Aligned_cols=260 Identities=17% Similarity=0.116 Sum_probs=170.6
Q ss_pred HHHHHHHhHhCCccEEEecCCCCCCC---chhhhccCCcceee--ecc-cCCCCCCCCCc----------cE--EEecCC
Q 002273 578 EKKVAAMVREDKIDILVELTGHTANN---KLGMMACQPAPVQV--TWI-GYPNTTGLPTI----------DY--RITDSL 639 (944)
Q Consensus 578 ~~~~a~~i~~d~idilvdl~g~t~~~---~~~~~a~r~ApvQ~--~~~-G~p~t~g~~~~----------Dy--~i~d~~ 639 (944)
-..++..|++.++||+ ||... ..+.++.+.|.+-+ +.. |++...+-..+ |. ..+| +
T Consensus 269 ~~~l~~~ir~~rpDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~ 342 (578)
T PRK15490 269 IKHLVPHLCERKLDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-F 342 (578)
T ss_pred HHHHHHHHHHcCCCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-h
Confidence 4679999999999999 66433 45555666655544 332 23322221100 11 1122 2
Q ss_pred CCCccc-cc-------ccccceEEcCCCccc--cCCCCCCC-CCCC--CCCCCCCCeEEEecCC--CCcCCHHHHHHHHH
Q 002273 640 ADPPET-KQ-------KHVEELIRLPECFLC--YTPSPEAG-PVCP--TPALTNGFITFGSFNN--LAKITPKVLQVWAR 704 (944)
Q Consensus 640 ~~p~~~-~~-------~~~e~~~~lp~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~ 704 (944)
+.-... .+ .-.+++..+|+..-. |.|....+ ..+. ..+++.+.+++|++.+ ..|.....++++.+
T Consensus 343 v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ 422 (578)
T PRK15490 343 MSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAAR 422 (578)
T ss_pred hhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHH
Confidence 211111 11 124677788864311 22221111 0000 1233455567787775 48999999999999
Q ss_pred HHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhh
Q 002273 705 ILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLY 783 (944)
Q Consensus 705 il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~ 783 (944)
+++..|+.+|+++|.+ ..++.+++.++++|+ .++|.|+|.. .+....|..+||++-|+-+ +.|.+.+|||+
T Consensus 423 llk~~pdirLvIVGdG----~~~eeLk~la~elgL-~d~V~FlG~~---~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA 494 (578)
T PRK15490 423 YLQHHPATRFVLVGDG----DLRAEAQKRAEQLGI-LERILFVGAS---RDVGYWLQKMNVFILFSRYEGLPNVLIEAQM 494 (578)
T ss_pred HHhHCCCeEEEEEeCc----hhHHHHHHHHHHcCC-CCcEEECCCh---hhHHHHHHhCCEEEEcccccCccHHHHHHHH
Confidence 9999999999999876 567788899999999 5899999984 4566678889999888766 66999999999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccc--------cC--CHHH---HHHHHHHHhcCHHHHHHHHHHHHHHhhcCC
Q 002273 784 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--------AK--NEDE---YVQLALQLASDVTALANLRMSLRDLMSKSP 850 (944)
Q Consensus 784 ~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--------~~--~~~~---y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~ 850 (944)
||+|||+ +++| |.+|+| +. |.++ -+..+.++..+...+..+++..|+.+. .
T Consensus 495 ~GlPVVA-------TdvG-------G~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~--e 558 (578)
T PRK15490 495 VGVPVIS-------TPAG-------GSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQ--E 558 (578)
T ss_pred hCCCEEE-------eCCC-------CcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999999 7776 554443 32 3333 333345556666555667777787765 4
Q ss_pred CCChHHHHHHHHHHHHH
Q 002273 851 VCDGQNFALGLESTYRN 867 (944)
Q Consensus 851 ~~~~~~~~~~~e~~~~~ 867 (944)
.|+.+.++..++++|..
T Consensus 559 ~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 559 RFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 49999999999999853
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=166.04 Aligned_cols=286 Identities=20% Similarity=0.194 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
+.-....|..++...+|.+|+..|..+++..|+++..|.+.+..++..++|++|.-..++.++++|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34456677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC---CCchhHHHhhhcCCHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN---FQSPFFELVKLEGDINQGVAYYK 313 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~A~~~~~ 313 (944)
..++..+|.+.++.. .++ ..+..+-.+... .......+. ....-..++...+++++|...--
T Consensus 129 a~~~~i~A~~~~~~~--------~~~-~~anal~~~~~~------~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK--------QAY-KAANALPTLEKL------APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred hhHHHHHHHHHhhhh--------hhh-HHhhhhhhhhcc------cccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 999999998887721 111 111111110000 000000000 00012345667899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 314 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 314 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
..+++++.+.++++..|.++...++.+.|+..|++++.++|+.. ..+..-|.-.++.|++.+|.++|.
T Consensus 194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999863 456667888899999999999999
Q ss_pred HHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 382 MALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 382 ~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.++.++|++ +..|.+++.+...+|+..+|+...+.++++++....++...|.|+..+++|++|.+.|+++++...+
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999986 4578999999999999999999999999999999999999999999999999999999999998877
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=159.20 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566777777777777777777777777777777777777777777777777777777777666655544
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
..+..+|.++...|++++|+..+++++
T Consensus 100 -----------------------------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 100 -----------------------------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445555666666666666666666666
Q ss_pred hhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 351 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 351 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
... +.....+..+|.++...|++++|...++++++.+|++...+..+|.++...|++++|+.+++++++..|.++..+
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 127 EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 542 344566777777777888888888888888887777777777888888888888888888888877777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
..++.++...|+.++|..+.+.+....|
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7777888888888888777777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-15 Score=163.14 Aligned_cols=238 Identities=23% Similarity=0.324 Sum_probs=195.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 255 (944)
+|....+...++..|...|+|++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666777788999999999999999999999987 44445556679999999999999999999999873
Q ss_pred -----CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC--------CC
Q 002273 256 -----PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW--------HY 322 (944)
Q Consensus 256 -----p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p--------~~ 322 (944)
|.-...+.+|+.+ |...|++++|..++++++++.. .-
T Consensus 275 ~G~~h~~va~~l~nLa~l------------------------------y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVL------------------------------YYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred cCCCCHHHHHHHHHHHHH------------------------------HhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 2223344455544 4556777888888888877632 23
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------- 387 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 387 (944)
...+.+++.++..++++++|+.++++++++. +.-+..+.++|.+|..+|++++|.++|++|+++.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 4578889999999999999999999999872 2346789999999999999999999999999874
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 388 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 388 -p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+.....+.++|..|.+.+++.+|...|.+++.+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 233568899999999999999999999999876 3555678999999999999999999999998853
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-14 Score=144.86 Aligned_cols=297 Identities=19% Similarity=0.189 Sum_probs=245.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (944)
+..|.-+.-.++.++|+..|...++.+|...++ ...+|+.+...|..+.|+..-+..++ .|+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHH
Confidence 345666677889999999999999999887665 67889999999999999998877665 4443 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 274 (944)
..||.-|+..|-++.|...|....+...--..++..|..+|....++++|++.-++..++.+... ...++..|+.+..
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence 89999999999999999999999887666678999999999999999999999999999988754 3456777777765
Q ss_pred hhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354 (944)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 354 (944)
. +....+.+.|+..++++++.+|+...+-..+|.++...|+|++|++.++.+++.+|
T Consensus 189 ~-----------------------~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 189 Q-----------------------ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred H-----------------------HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 5 66677889999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 355 HC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 355 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
+. +++...|..+|.+.|+.++.+..+.++.+..++ +++...++..-....-.+.|..++.+-+...|+--. .+.+..
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~ 323 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHH
Confidence 87 778889999999999999999999999998876 455666777777777788999999999999998443 333333
Q ss_pred HHHH---cCCHHHHHHHHHHH
Q 002273 434 LYRD---AGSISLAIDAYEQC 451 (944)
Q Consensus 434 ~~~~---~g~~~eA~~~~~~a 451 (944)
.... .|...+.+..+++.
T Consensus 324 ~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred hhhccccccchhhhHHHHHHH
Confidence 3222 23344444444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-14 Score=140.87 Aligned_cols=375 Identities=15% Similarity=0.115 Sum_probs=239.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
.-++.+.+|..|+.+++-.+..+.+. ...-..+|.|++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 45677899999999999887665443 35677899999999999999999999988777778899999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|...-.++ |+.+-- .++++.++ .+.++-++ +..|.+.++. ..+-...|+.+.+..-.|++|++.|
T Consensus 110 A~~~~~ka----~k~pL~----~RLlfhla---hklndEk~-~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLC----IRLLFHLA---HKLNDEKR-ILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHhhC----CCChHH----HHHHHHHH---HHhCcHHH-HHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98877665 444332 22233333 23444333 3334443332 2345667888888888999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCch
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (944)
++++..+|+....-..++.+|.++.-++-+.+.+.-.++..|+...+...++..+.++-....++........+....-.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 99999999988888899999999999999999999999999999998888887776654433333322222111111111
Q ss_pred hHHHhhh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 295 FFELVKL-----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 295 ~~~l~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
.++-+.+ -.+-+.|++.+-..++.- +++..++...|.++++.++|+.+.+ +++|..+.-+...|.+...
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHH
Confidence 1111110 112233444443333322 4556666666666666666665554 3466666666666666666
Q ss_pred CCCHHHHHHHHHHHH---hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 370 RDNLDKAVECYQMAL---SIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 370 ~g~~~~A~~~~~~al---~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
.|+--...+.++-|- .+- -+.......+|.+++-..++++-+.++...-...-++....+++++++...|+
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcC
Confidence 554433333332222 111 11112233445555555566666666655555555555556666666666666
Q ss_pred HHHHHHHHHHH
Q 002273 441 ISLAIDAYEQC 451 (944)
Q Consensus 441 ~~eA~~~~~~a 451 (944)
+.+|.+.|-+.
T Consensus 409 y~eaEelf~~i 419 (557)
T KOG3785|consen 409 YVEAEELFIRI 419 (557)
T ss_pred hHHHHHHHhhh
Confidence 66666665544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=160.63 Aligned_cols=210 Identities=12% Similarity=0.061 Sum_probs=166.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 279 (944)
+...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..+.++++.+|++..+|...+.++..++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~---- 122 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD---- 122 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch----
Confidence 334566777888888888888888888888888877777 567888888888888888877777777666554421
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (944)
.+++++.+++++++.+|++..+|...+.++...|++++|+++++++++.+|.+..+
T Consensus 123 ------------------------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 123 ------------------------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred ------------------------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 12567778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHC---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 360 CNNLGVIYKDR---DNL----DKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 360 ~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
|+..+.++... |.+ ++++++..+++.++|++..+|..++.++.. +++..+|++.+.++++..|.+..++
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 88888887665 222 567888889999999999999988888877 4556778888888888888888888
Q ss_pred HHHHHHHHHc
Q 002273 429 NNLGVLYRDA 438 (944)
Q Consensus 429 ~~la~~~~~~ 438 (944)
..|+.+|...
T Consensus 259 ~~l~d~~~~~ 268 (320)
T PLN02789 259 SDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhh
Confidence 8899888763
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-15 Score=164.13 Aligned_cols=241 Identities=25% Similarity=0.347 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 220 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 220 (944)
..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++++|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666999999999999999999999998 5555566667999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHh
Q 002273 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299 (944)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 299 (944)
+|....++.+||.+|...|++++|..++++++++..... ...-.++..+..++ .++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~-----------------------~~~ 335 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA-----------------------AIL 335 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH-----------------------HHH
Confidence 344567899999999999999999999999998743300 00111111222211 225
Q ss_pred hhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHH
Q 002273 300 KLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNL 363 (944)
Q Consensus 300 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 363 (944)
...+++++|..++++++++. +.-+..+.++|.+|..+|++++|.++|++++.+. +.....+..+
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 56778899999999888763 2335789999999999999999999999999873 2335688899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 364 GVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|..|.+.+++.+|.+.|.++..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999998876 3455668999999999999999999999999854
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=155.05 Aligned_cols=211 Identities=11% Similarity=0.017 Sum_probs=147.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (944)
.++.++|+..+.++++++|++..++ ...+.++...+ ++++++..++++++.+|++..+|+..+.++...++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW-------~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVW-------HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHH-------HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 4555666666666666666665543 33333333344 456777777777777777777777777777766653
Q ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 208 --DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 208 --~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
++++.+++++++.+|.+..+|...+.++...|+++++++++.++++.+|.+..+|...+.++..++..
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l---------- 192 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL---------- 192 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc----------
Confidence 56777777888888888888888888888888888888888888888888877777777666544211
Q ss_pred hcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (944)
.......++++++..+++..+|++..+|..++.++.. .++..+|+..+.+++..+|.++.++.
T Consensus 193 -------------~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 193 -------------GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred -------------ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 0001123567888888888999988888888888877 34556788888888888888888888
Q ss_pred HHHHHHHH
Q 002273 362 NLGVIYKD 369 (944)
Q Consensus 362 ~la~~~~~ 369 (944)
.|+.+|..
T Consensus 260 ~l~d~~~~ 267 (320)
T PLN02789 260 DLLDLLCE 267 (320)
T ss_pred HHHHHHHh
Confidence 88888865
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-13 Score=153.85 Aligned_cols=314 Identities=14% Similarity=0.042 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
+|+.+.++..+|.++...|+.+++.+.+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67888888888888888888888888888877766644 445667778888888888888888888888888764422
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (944)
. +..+..+| ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|++..++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444444444443345666677777888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHH
Q 002273 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK 314 (944)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 314 (944)
+...|++++|+..+++++...|......
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~---------------------------------------------------- 185 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLR---------------------------------------------------- 185 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchh----------------------------------------------------
Confidence 8888888888888888887766421110
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCCHHHHHHH---HHHHHhh
Q 002273 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN---NLGVIYKDRDNLDKAVEC---YQMALSI 386 (944)
Q Consensus 315 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~---~~~al~~ 386 (944)
...+..++.++...|++++|+..|++++...|. ...... .+...+...|....+..+ .......
T Consensus 186 --------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~ 257 (355)
T cd05804 186 --------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH 257 (355)
T ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Confidence 123445666666667777777777666554441 111111 111222223322222221 1111111
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 387 KPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 387 ~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
.+. ........+.++...|+.++|...++........ ...+....+.++...|++++|.+.+..++.+-
T Consensus 258 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 258 FPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111 1222335677777888888888888777554322 24566778888899999999999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-12 Score=132.53 Aligned_cols=408 Identities=15% Similarity=0.058 Sum_probs=302.3
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
-....|+..|..-+++.....|..++++++..-|.-...|+.....-..+|+...|.+.|++-++..|+. .+|......
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~f 183 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKF 183 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999999999864 677777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYS 202 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 202 (944)
-.+.++.+.|...|++.+-..|+-.. +...+..-...|+...|...|++|++.-.++ ...+...|..-.
T Consensus 184 ElRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 88888899999999999888887332 5566666677788888888888887764443 223444455555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH---HHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 203 ELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE---SAI-----ACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~---~A~-----~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
.++.++.|.-+|+-++..-|.+ .+.+......--+-|+.. +++ -.|++.+..+|-+.++|..+..+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 6667777777777777766654 222222222222333322 222 135555666666666666666655555
Q ss_pred hhhhhhhHHHHHhhcCCCCCc------hhH------HH--hhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 002273 273 GTKTYGRALLLFRLNGSNFQS------PFF------EL--VKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYG 334 (944)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~------~~~------~l--~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 334 (944)
|..............+....+ .++ .+ -....+.+.+.+.|+.++++-|.. +.+|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 544333332222222111111 111 11 123578899999999999998874 678999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
++.+...|.+.+-.++-..|.+ ........+-.+.++++....+|++-++..|.+..+|...|.+-..+|+.+.|...|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999984 455556677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 415 EKAIAANPTY-AE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 415 ~~al~~~p~~-~~-a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+-|++...-+ ++ .|-.....-...|.+++|...|++.|+..+... ++..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 9998875433 22 334445556778999999999999999998766 5544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-13 Score=150.49 Aligned_cols=208 Identities=16% Similarity=0.088 Sum_probs=170.4
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (944)
+|..+..++.+|..+...|+.++|...+.++.+..|.+ .+..+..+.++...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 45577889999999999999999999999998887754 567888899999999999999999999999999987776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-cCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 199 (944)
. +..+...|++..+.....+++. ..+.++.. ...+..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY----WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 5 5555555554444444444443 22222222 2235677888999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 200 VYSELMQYDTALGCYEKAALERPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999876432 3466899999999999999999999976665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-13 Score=134.99 Aligned_cols=377 Identities=15% Similarity=0.096 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------------CC-
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP- 113 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p- 113 (944)
+..+..|.+++..|+|++|+..|+-+...+.-+.+.+..++.|++-.|.|.+|.....++-+. +.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 455678999999999999999999999887778999999999999999999998877665321 10
Q ss_pred -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
+..+-...++.+.+..-.|++|++.|.+.+.-+|+.... -..++.+|++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 112234556666666777888888888888877765432 34566677777888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 002273 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (944)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------l~~~p----~~~~~~~~ 230 (944)
.++..|++..+...++...++.=+-..|....+.. ++.-| --+++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 88888888877777776666543222222222211 11112 13567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
+...|.++++.++|+...+. .+|..+.-+...+.+...+|+. ........-|..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe-----------------------~gSreHlKiAqq 344 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQE-----------------------TGSREHLKIAQQ 344 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhh-----------------------cCcHHHHHHHHH
Confidence 88888888888888876554 6788887777777777777754 111112233333
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Q 002273 311 YYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK- 387 (944)
Q Consensus 311 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 387 (944)
.++-.-.. .-+.......++.+++-..++++.+.+++..-....++....++++..+...|++.+|.+.|-+.-..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 33322111 111223456677778888899999999988888888888889999999999999999999998775544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+.......+|+||...++++-|-..+-+. ..|.. ...+..++....+.+++--|.+.|...-.++|+-.+
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 334456677999999999999998877543 12222 334556788888899988899999988888887543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-12 Score=134.68 Aligned_cols=398 Identities=14% Similarity=0.046 Sum_probs=263.3
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
|.+..++...-..+.+.++|++|+.+.++-......+ ...+..+.|.+++++.++|+..++ -.++.+..++...|.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 5577888888999999999999995544432221112 223799999999999999999998 456666778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH------------------------HHHHHHHHHHHHHcCChHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECL------------------------AIVLTDLGTSLKLAGNTQDGIQKY 180 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------a~~~~~lg~~~~~~g~~~~A~~~~ 180 (944)
+++++|+|++|...|+...+.+.++.+..... -..+++.+.++...|+|.+|++.+
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999999999987665543321110 124678888999999999999999
Q ss_pred HHHHhh--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCH
Q 002273 181 YEALKI--------DPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC----NMGVIYKNRGDL 241 (944)
Q Consensus 181 ~~al~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~ 241 (944)
++++++ +.+ -..+...++.++..+|+.++|...|...++.+|.+..... ++-.+-....-+
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccC
Confidence 999544 111 1345678899999999999999999999998876653222 221111111111
Q ss_pred H-HHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhH-----HHh-hhcCC
Q 002273 242 E-SAIACYERCLAVSPN----------FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFF-----ELV-KLEGD 304 (944)
Q Consensus 242 ~-~A~~~~~~al~~~p~----------~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~l~-~~~~~ 304 (944)
+ .++..++......++ -...+.+.+.+....+..... ..........+...++ +.. .....
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~--r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~ 356 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV--RELSASLPGMSPESLFPILLQEATKVREKK 356 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHhCCccCchHHHHHHHHHHHHHHHHH
Confidence 1 111122111111111 111222333332222222111 1111222222222222 112 22235
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHCCCHHHH
Q 002273 305 INQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHF-------NPHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 305 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A 376 (944)
+.++.+++....+.+|.. ..+...++.+.+.+|+++.|++.+...+.. ....+.+-..+-.+++..++.+.|
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH
Confidence 788999999999889887 678889999999999999999999944321 112244555555666777766666
Q ss_pred HHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 377 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 377 ~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
...+.+++.. .+..-..+...+.+-.+.|+-++|...+++.++.+|++.+++..+...|... +.+.|..+-+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 6666666654 2333345666778888889999999999999999999999999998888766 5666665443
|
|
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-13 Score=151.14 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=140.6
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhH----cCCceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
.+|.++++ +.|.++..+++|+++++. .|+.+|+|+|++.. +....+.+++.++++|+ .++|.|.|.++ .+
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V~f~g~v~-~~ 346 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDVEFHKNVS-YR 346 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcEEEeCCCC-HH
Confidence 34666664 589999999999998764 47899999987532 23445778889999999 68999999987 68
Q ss_pred HHHHhcccccEEecCC-CCCCcccHHHhhhcCCcEEecCCCcccccchhHH---Hhh--cCCcccccCCHHHHHHHHHHH
Q 002273 755 DHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL---LTK--VGLKHLIAKNEDEYVQLALQL 828 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~-~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~---l~~--~gl~~~v~~~~~~y~~~a~~l 828 (944)
+....|+.+|+++-|. ..+.|.+.+|||++|+|||+ ++.|+-. ... -|...+.+.|++++.+...++
T Consensus 347 el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa-------~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~l 419 (463)
T PLN02949 347 DLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIA-------HNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEV 419 (463)
T ss_pred HHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEE-------eCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHH
Confidence 8889999999999876 45889999999999999998 4444211 111 144567778999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 829 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 829 ~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.+ |++.+.+|++..|++.. .|+++.|+++++++|+.+..
T Consensus 420 l~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 420 LRMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HhCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHh
Confidence 98 57888899999998862 39999999999999998764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=141.06 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=157.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH--
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC-- 117 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 117 (944)
.++..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456889999999999999999999999999999999875 68899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 118 -AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 118 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
+++.+|.++... |++++|++.|++++..+|++......+ ..++.... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~------------ 164 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R------------ 164 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H------------
Confidence 789999999886 889999999999999999986653221 11111110 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.......+|.+|...|++.+|+..++++++..|+ .+++++.+|.++...|++++|..+++.+....|
T Consensus 165 -~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 -LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0123457888899999999999999999988665 457889999999999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-11 Score=134.99 Aligned_cols=276 Identities=16% Similarity=0.066 Sum_probs=205.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
..+.++..+.++...|++++|++.+++....-.+....+-.+|.++.++|++++|...|...++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35678889999999999999999999988888888999999999999999999999999999999999999999988887
Q ss_pred HHcC-----CHHHHHHHHHHHHHcCCCChhH------------HhHHHHH-------------HHHHHHHHHHcCChHHH
Q 002273 127 KDEG-----RLVEAAESYHKALSADPSYKPA------------AECLAIV-------------LTDLGTSLKLAGNTQDG 176 (944)
Q Consensus 127 ~~~g-----~~~~A~~~~~~al~~~p~~~~~------------~~~la~~-------------~~~lg~~~~~~g~~~~A 176 (944)
.... +.+.-...|++.....|..... ....+.. +.++-..|....+..-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 3332 5677788888887777763222 1111111 11222222222222222
Q ss_pred HHHHHHHHhh---C------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 177 IQKYYEALKI---D------------PHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 177 ~~~~~~al~~---~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
..++...... . |.. ..+++.++..|...|++++|+++++++|+..|..++.+...|.++...|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 2222222211 0 111 2466889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++.+|.+.++.+-.++..+-......+..+.+. |++++|.+.+......+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa------------------------------~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRA------------------------------GRIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHhhcCCC
Confidence 999999999999999998877766666665554 45577776666554433
Q ss_pred CC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 320 WH--Y-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352 (944)
Q Consensus 320 p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 352 (944)
.+ . .......|.+|.+.|++..|++.|..+.+.
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 0 223455688888888888888888877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=147.11 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=136.2
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC----CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccC
Q 002273 679 TNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 679 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
.++.++++++.+. .|..+.+++++.++++..| +.+|+++|.+ ..++.+++.+++.|+ .++|.|.|.
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~--- 262 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDG----PARGACEQMVRAAGL-AHLVWLPGE--- 262 (374)
T ss_pred CCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCC----chHHHHHHHHHHcCC-cceEEEcCC---
Confidence 4556677777755 7899999999999998877 6799998865 355778888899999 588999886
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc--------c--cCCHHHH
Q 002273 753 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL--------I--AKNEDEY 821 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~--------v--~~~~~~y 821 (944)
..+....|..+|+++-|.-+ +.|.+.+|||+||+|||+ +++| |++|+ + ..|.+++
T Consensus 263 ~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-------s~~~-------g~~e~i~~~~~g~~~~~~d~~~l 328 (374)
T TIGR03088 263 RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-------TAVG-------GNPELVQHGVTGALVPPGDAVAL 328 (374)
T ss_pred cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-------cCCC-------CcHHHhcCCCceEEeCCCCHHHH
Confidence 35677888999999877644 779999999999999998 6665 44433 3 3589999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 822 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 822 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
++....+.+|++.+..+++..|+.+.+ .|+++.+++.+++.|+++
T Consensus 329 a~~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 329 ARALQPYVSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998887754 499999999999999864
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-12 Score=151.63 Aligned_cols=290 Identities=13% Similarity=0.089 Sum_probs=220.3
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
..+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 346888999999999999999999999999999999999999999999999999997777666 555554443
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (944)
.++ .+++++...+...+++..+++.+|.+|-++|++++|...|+++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 233 5556666666667788889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
... +.++|++++.+++.. +...+++.++.+++.+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------------------------------------~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------------------------------------FIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------------------------------------HHhhhcchHHHHHHHHH
Confidence 999 999999999998875 22244668888889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002273 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (944)
+..+|.+.+.+..+-......-.+..+ ...+.-+-..|...++|++++.+++.+++.+|.+..+..
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 998888777654443322222112222 344555566777888899999999999999999988888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.++.+|. +.|.. ...++..+++. .+-.....+..|+..|++.+..++.+--.+
T Consensus 262 ~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 262 ELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 8888887 44433 44455444432 111112456788888999888888765443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-10 Score=121.17 Aligned_cols=298 Identities=13% Similarity=0.061 Sum_probs=198.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 201 (944)
|..-+..|+|.+|.....+.-+..+...- .+..-+....+.|+++.+-.++.++-+..++ ...+....+.+.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l-------~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVL-------AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHH-------HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44444556666666666665444433222 2333445555666666666666666665322 344555666667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHhhhhhhhhH
Q 002273 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKTYGRA 280 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~l~~~~~~~~~~a 280 (944)
...|+++.|..-..++++..|.++.++.....+|...|++.+....+.+.-+..--+..-...+ -.++..+=+.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q----- 238 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ----- 238 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH-----
Confidence 7777777777777777777777777777777777777777776666666554432221111111 0000000000
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
....+..+.-..+++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ..
T Consensus 239 ------------------~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~ 299 (400)
T COG3071 239 ------------------ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC 299 (400)
T ss_pred ------------------HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH
Confidence 00011112222344444444445688888999999999999999999999998764432 22
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
..++ ...-++.+.=++..++.++..|+++..+..||.++.+.+.|.+|.++|+.+++..|+ ...+..+|.++.+.|+
T Consensus 300 ~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred HHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 2222 235678899999999999999999999999999999999999999999999999887 7889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002273 441 ISLAIDAYEQCLKI 454 (944)
Q Consensus 441 ~~eA~~~~~~al~l 454 (944)
.++|.+.+++++..
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998854
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=136.77 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=148.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
++..+..++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-- 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--
Confidence 445789999999999999999999999999999999876 578999999999999999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 155 CLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (944)
..+++.+|.++... |++++|++.|+++++.+|++...+..+..+.... .. ...
T Consensus 107 --~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~ 167 (235)
T TIGR03302 107 --DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAG 167 (235)
T ss_pred --HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHH
Confidence 22456667777665 7899999999999999999866654333221111 10 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhhhhhhHH
Q 002273 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKTYGRAL 281 (944)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~a~ 281 (944)
....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+...+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34578899999999999999999999997764 57899999999999987655543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-13 Score=149.26 Aligned_cols=262 Identities=18% Similarity=0.173 Sum_probs=176.1
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC--CcceeeecccC---CCCC----------CCCCccEEEecCC--CC
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGY---PNTT----------GLPTIDYRITDSL--AD 641 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~G~---p~t~----------g~~~~Dy~i~d~~--~~ 641 (944)
..+.+.|...++||+.--+.++...-..+++.| ..|+=.+.-|. +... .....|.+|+-.. .+
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 456677778899999543332221111233333 34554443331 1111 1234566554211 11
Q ss_pred Ccc-cccccccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEE
Q 002273 642 PPE-TKQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVV 716 (944)
Q Consensus 642 p~~-~~~~~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 716 (944)
-.- ....-.+++..+|+..-. |.|.... ..++.++++++++. .|....+++++..+.+..|+.+|++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~--------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i 229 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPSK--------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII 229 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCccc--------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE
Confidence 000 011124567788864210 2221110 23455678777765 8889999999999988999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCc
Q 002273 717 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 795 (944)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~ 795 (944)
+|.+ .....+++.+++.|++ ++|.|.|.++ ..+....|..+|+++-|..+ +.|.+.+|||+||+|||+
T Consensus 230 ~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~----- 298 (398)
T cd03796 230 GGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVS----- 298 (398)
T ss_pred EeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEE-----
Confidence 9875 3567788888999994 8999999987 68999999999999877755 778999999999999998
Q ss_pred ccccchhHHHhhcCCcc--------cccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 796 HAHNVGVSLLTKVGLKH--------LIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 796 ~~~r~~~~~l~~~gl~~--------~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.+| |++| ++..|.+++++...++.++......+++..++++.. .|+++..++.+.+.|+.
T Consensus 299 --s~~g-------g~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 299 --TRVG-------GIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKK--MYSWEDVAKRTEKVYDR 367 (398)
T ss_pred --CCCC-------CchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHh--hCCHHHHHHHHHHHHHH
Confidence 5444 3333 345588999999999999877666677777776653 49999999999999998
Q ss_pred HHH
Q 002273 868 MWH 870 (944)
Q Consensus 868 ~~~ 870 (944)
+..
T Consensus 368 l~~ 370 (398)
T cd03796 368 ILQ 370 (398)
T ss_pred Hhc
Confidence 653
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=129.53 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
.+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4556666666553 4455666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
++.+++++|.++...|++++|+..|++++++.|+++..+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666666666554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=140.11 Aligned_cols=286 Identities=21% Similarity=0.220 Sum_probs=202.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 196 (944)
|.-+++.|++...+..|+.+++...++. ..+..+|..+|+.|...++|++|+++-..-+.+ .-..+.+.-+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl---~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL---STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH---HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 5667888888989999999988876653 346677888999999999999998876543322 2234556678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 197 LGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
||.++.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+.-.-..-- +....+.++.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~-------- 168 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVT-------- 168 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh----hcccccHHHH--------
Confidence 89999999999999998888766432 23568888999988877532110000 0000000000
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIV 344 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~ 344 (944)
..++.|.++|..-+++... ...++-++|..|+-+|+|++|+.
T Consensus 169 --------------------------------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 169 --------------------------------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 1124444444444443222 13467788888888899999988
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 345 FYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 345 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
.-+.-+.+..+. -.++.++|.++.-.|+++.|+++|++.+.+. . ..+...+.||..|.-..++++|+.
T Consensus 217 ~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 217 FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887777664322 4578889999999999999999998877552 1 235578889999999999999999
Q ss_pred HHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 413 MIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 413 ~l~~al~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
++++-+.+.. ....+++.||..+..+|..++|+.+.++.+++.
T Consensus 297 Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9998877632 236788999999999999999999888877653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-10 Score=121.15 Aligned_cols=295 Identities=14% Similarity=0.033 Sum_probs=210.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHH
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 165 (944)
..-|..-+..|+|.+|.+...+.-+..+....++..-+...-+.|+++.|-.++.++-+..+++.-. +....+.
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~------v~ltrar 161 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA------VELTRAR 161 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH------HHHHHHH
Confidence 3445556677899999998888877777666777777788888899999999999988885554433 3566677
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHH--HHHcCC
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY---CNMGVI--YKNRGD 240 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~--~~~~g~ 240 (944)
.+...|++..|.....++++..|.++.+......+|...|++.+...++.+.-+..--+.+-+ -+.+.. +.+..+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999999999999999999999999999998888888776543222111 111111 111111
Q ss_pred HHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 241 LESA---IACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 241 ~~~A---~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
-+.+ ..+++..-..-.+++.....++.- +...|+.++|.+..+++++
T Consensus 242 ~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~------------------------------li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 242 DNGSEGLKTWWKNQPRKLRNDPELVVAYAER------------------------------LIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred cccchHHHHHHHhccHHhhcChhHHHHHHHH------------------------------HHHcCChHHHHHHHHHHHH
Confidence 1111 112222222222233333333333 4455666999999998888
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 318 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 318 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
..-+.. .... .-...-++...=++..++.++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+
T Consensus 292 ~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~l 367 (400)
T COG3071 292 RQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAEL 367 (400)
T ss_pred hccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHH
Confidence 765533 1111 22345678888888899999999999999999999999999999999999999988776 6678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|.++.++|+..+|.+..++++..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
|
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=151.86 Aligned_cols=342 Identities=13% Similarity=0.081 Sum_probs=198.4
Q ss_pred CCCcEEEeecC-CCccCc--HHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHH-HHhhh-CCceEec---cCCCHH
Q 002273 508 ERPLVIGYVSP-DYFTHS--VSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMKK-GGIWRDI---YGIDEK 579 (944)
Q Consensus 508 ~~~lriGy~S~-d~~~h~--v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~-~~~~~-~~~~~~~---~~~~~~ 579 (944)
.++.||..+.. .+..|. +...+..+.+.+.....||++.+...........++- .+... ...+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 67889998753 333333 2345555666666677888888764322110000000 00000 0000000 0111 3
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhh--ccCCcceeeecccCCCCC----C---------------CCCccEEEecC
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMM--ACQPAPVQVTWIGYPNTT----G---------------LPTIDYRITDS 638 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~--a~r~ApvQ~~~~G~p~t~----g---------------~~~~Dy~i~d~ 638 (944)
.+.+.|+..++||+.--+.+. ..-..++ ...-.|+-+++-++.... + ....|.+++..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~-~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S 213 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGI-MVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTS 213 (465)
T ss_pred HHHHHHHhCCCCEEEECCCch-hHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECC
Confidence 678899999999985322111 1111211 223357666554432110 0 01235554421
Q ss_pred CCCCccccccc---ccceEEcCCCcc--ccCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC
Q 002273 639 LADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP 710 (944)
Q Consensus 639 ~~~p~~~~~~~---~e~~~~lp~~~~--~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p 710 (944)
-..-......+ .+++..+|+..- .|.|.......+. ......+.++++.++++ .|.. +.+.+++...|
T Consensus 214 ~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~----~~li~a~~~~~ 289 (465)
T PLN02871 214 PALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL----DFLKRVMERLP 289 (465)
T ss_pred HHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH----HHHHHHHHhCC
Confidence 10000111222 456666675321 1222211110000 11122244566777765 5554 44455667789
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEE
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 789 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvv 789 (944)
+.+|+|+|.+ ..++.+++.++. .+|.|+|.++ .++....|..+||++-|..+ +.|.+.+|||+||+|||
T Consensus 290 ~~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVV 359 (465)
T ss_pred CcEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEE
Confidence 9999999876 455556555432 4799999987 58899999999999988755 66999999999999999
Q ss_pred ecCCCcccccchh--HHHhh--cCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 790 TMAGSVHAHNVGV--SLLTK--VGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 790 t~~g~~~~~r~~~--~~l~~--~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
+ +++|. -++.. .|-..++ ..|++++.+....|.+|++.+.++++..++... -|+++..++.+++
T Consensus 360 ~-------s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~ 429 (465)
T PLN02871 360 A-------ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRN 429 (465)
T ss_pred E-------cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 8 55542 11211 1333444 358999999999999999999999999998763 3999999999998
Q ss_pred -HHHHHHHHHhcC
Q 002273 864 -TYRNMWHRYCKG 875 (944)
Q Consensus 864 -~~~~~~~~~~~~ 875 (944)
.|++++.+|...
T Consensus 430 ~~Y~~~~~~~~~~ 442 (465)
T PLN02871 430 EQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 799988887653
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=137.93 Aligned_cols=296 Identities=23% Similarity=0.249 Sum_probs=186.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHH
Q 002273 89 GICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (944)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (944)
|.-+++.|++...+.+|+.+++...++. .+|..||..|+.+++|++|+++...-+.+...-.+ ...-+...-++|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhcccccccccc
Confidence 4555666777777777777776655543 35666777777777777777665433322111000 011123345677
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQY--------------------DTALGCYEKAA 218 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al 218 (944)
+.+...|.|++|+.+..+-+.... ....+++++|.+|...|+. +.|.++|+.-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 777778888888877777665422 2356788888888877652 23333333333
Q ss_pred HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCC
Q 002273 219 LERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292 (944)
Q Consensus 219 ~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~ 292 (944)
++... ...++-+||..|+-+|+|+.|+..-+.-+.+....
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---------------------------------- 228 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---------------------------------- 228 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----------------------------------
Confidence 32111 12244455555555555555555444333221110
Q ss_pred chhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 002273 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVI 366 (944)
Q Consensus 293 ~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 366 (944)
=.++. .-.++.++|.++.-.|+++.|+++|++.+.+. ...+...+.||..
T Consensus 229 -------------------GDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 229 -------------------GDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred -------------------hhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 00000 13577889999999999999999999877652 2236778899999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-----PT-YAEAYNNLGVL 434 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-----p~-~~~a~~~la~~ 434 (944)
|.-..++++||.++++-+.+.. ....+++.||..+..+|..++|+.+.++.++.. +. ...+..++...
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl 364 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDL 364 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHH
Confidence 9999999999999998877643 335689999999999999999999998887752 22 24566777777
Q ss_pred HHHcCCHHH
Q 002273 435 YRDAGSISL 443 (944)
Q Consensus 435 ~~~~g~~~e 443 (944)
-..+|..+.
T Consensus 365 ~~~lG~~ds 373 (639)
T KOG1130|consen 365 ILELGQEDS 373 (639)
T ss_pred HHHhCCCcc
Confidence 777776544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=126.96 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 002273 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387 (944)
Q Consensus 308 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 387 (944)
-...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788999998874 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
|+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876544
|
|
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=150.90 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=141.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.+++++++++ .|..+.+++++..+.+..|+.+|+++|.+ +.++.+++.++++|+ .++|.|.|.++ +.+...
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l-~~~V~~~G~~~-~~el~~ 294 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQL-EDVVEMPGFKP-SHEVKA 294 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCC-CCeEEEeCCCC-HHHHHH
Confidence 44566777765 79999999999999888899999999876 567889999999999 58999999987 688999
Q ss_pred hcccccEEecCCC-------CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------cCCHHHH
Q 002273 759 AYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------AKNEDEY 821 (944)
Q Consensus 759 ~~~~~Di~Ld~~~-------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------~~~~~~y 821 (944)
.|..+|+++-|+- .+.+++.+|||+||+|||+ +++| |++|+| ..|.+++
T Consensus 295 ~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-------t~~~-------g~~E~v~~~~~G~lv~~~d~~~l 360 (406)
T PRK15427 295 MLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-------TLHS-------GIPELVEADKSGWLVPENDAQAL 360 (406)
T ss_pred HHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE-------eCCC-------CchhhhcCCCceEEeCCCCHHHH
Confidence 9999999988764 4678999999999999999 6666 454433 2589999
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 822 VQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 822 ~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+...+|.+ |++.++++++..|+.+.+. |+++..++.+++.|++
T Consensus 361 a~ai~~l~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 361 AQRLAAFSQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhh
Confidence 999999999 9999999999999988655 9999999999999976
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-11 Score=136.04 Aligned_cols=298 Identities=14% Similarity=0.092 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
.++.....++...|++++|++++++....-.+....+-..|.++.++|++++|...|..+++.+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 34566677888999999999999998888888899999999999999999999999999999999999999998888733
Q ss_pred cC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH-----hhcCCCCCchhHHHhhhcCCHHH
Q 002273 238 RG-----DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF-----RLNGSNFQSPFFELVKLEGDINQ 307 (944)
Q Consensus 238 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~-----~~~~~~~~~~~~~l~~~~~~~~~ 307 (944)
.. +.+.-.+.|++.....|........- .... .|. .+...+..+ ....+.+-..+-.+|....+..-
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~~-~g~-~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDFL-EGD-EFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhh-cccC-CHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 33 56777888888888777643322111 1000 011 111111111 11112222233344443333333
Q ss_pred HHHHHHHHHHh---------------CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 308 GVAYYKKALYY---------------NWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 308 A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
...++...... .|.. ..+++.++..|...|++++|+++.+++++..|..++.+...|.++...
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 33333332211 1111 246788999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHHcCCH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY-------AEAYNNLGVLYRDAGSI 441 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~-------~~a~~~la~~~~~~g~~ 441 (944)
|++++|.+.++.+.+++..+-.+....+..+.+.|+.++|.+.+......+- .. .......|.+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999988765542 11 22334579999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 002273 442 SLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 442 ~eA~~~~~~al~l~P~~ 458 (944)
..|++.|..+.+..-+.
T Consensus 322 ~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 322 GLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988875543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-10 Score=145.66 Aligned_cols=386 Identities=13% Similarity=-0.014 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~ 128 (944)
.....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3345566778899999888766554111 1123445556777778888888777665431 1112344556777888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCh--hHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 002273 129 EGRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVY 201 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 201 (944)
.|++++|...+.++....+... ......+.+...++.++...|++++|...++++++..+.. ..+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 9999999999998876543211 0111234455567888899999999999999999864432 23567789999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhhh
Q 002273 202 SELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGT 274 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~~~~ 274 (944)
...|++++|...+++++..... ....+..++.++...|++++|...+++++........ .....+.++..++
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la- 580 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA- 580 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-
Confidence 9999999999999999875332 1245678899999999999999999999876322100 0000000011111
Q ss_pred hhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELA 349 (944)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a 349 (944)
.++...|++++|...+++++..... ....+..++.++...|++++|...+.++
T Consensus 581 ----------------------~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 581 ----------------------QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2244568889999999998775321 2456677899999999999999999999
Q ss_pred HhhCCCC---HHHHH----HHHHHHHHCCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 350 FHFNPHC---AEACN----NLGVIYKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 350 l~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~al 418 (944)
..+.... ..... .....+...|+.++|...+.......+... ..+..++.++...|++++|...+++++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7763321 11111 122445568999999999877655332222 225678999999999999999999998
Q ss_pred HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 419 AANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 419 ~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.... ....++..+|.++...|+.++|...+++++++.....
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8621 2356788999999999999999999999999886543
|
|
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=145.31 Aligned_cols=340 Identities=16% Similarity=0.096 Sum_probs=214.5
Q ss_pred EEEeecCCCccC--cHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhh-----hCCceEeccCCCHHHHHHH
Q 002273 512 VIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMK-----KGGIWRDIYGIDEKKVAAM 584 (944)
Q Consensus 512 riGy~S~d~~~h--~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~ 584 (944)
||.+++..+..+ .....+..+...+....++|.+++.................. ....+..........+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 356666665544 344555666666666788888887754332211110000000 0000000000113457778
Q ss_pred hHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC------------------CCCccEEEecCCCCCcccc
Q 002273 585 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETK 646 (944)
Q Consensus 585 i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g------------------~~~~Dy~i~d~~~~p~~~~ 646 (944)
+...++||++-...+...........+-.|+-+.+.+...... +...|++++-....-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999999877777655443334455666656555443221 2345766653222222223
Q ss_pred cccc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCC
Q 002273 647 QKHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKP 720 (944)
Q Consensus 647 ~~~~---e~~~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 720 (944)
..+. .++..+|+.. ........ ...........+.++++.+++ ..|....++++|..+....|+.+|++.|.+
T Consensus 161 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~ 239 (374)
T cd03801 161 ELGGVPPEKITVIPNGV-DTERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG 239 (374)
T ss_pred hcCCCCCCcEEEecCcc-cccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc
Confidence 3333 3677777532 11111000 000112233444556666664 588999999999999999999999999854
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCccccc
Q 002273 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN 799 (944)
Q Consensus 721 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r 799 (944)
.....+.+.+...++ .++|.|.|.++ ..+....+..+|+++.|..+ +.|++.+|||++|+|||+.....+...
T Consensus 240 ----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~ 313 (374)
T cd03801 240 ----PLREELEALAAELGL-GDRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEV 313 (374)
T ss_pred ----HHHHHHHHHHHHhCC-CcceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHH
Confidence 556667777778888 58999999987 68999999999999999877 669999999999999999554333221
Q ss_pred chhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 800 VGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 800 ~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+.. |-..++. .|++++++....+..|++.+.++++..++...+. |+++.+++.+.+.|+
T Consensus 314 -----~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (374)
T cd03801 314 -----VED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVYY 374 (374)
T ss_pred -----hcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhC
Confidence 211 2223333 3469999999999999999999999988766544 899999999988773
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=128.27 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=129.4
Q ss_pred HhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002273 298 LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 377 (944)
Q Consensus 298 l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 377 (944)
+|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.+|...|++++|+
T Consensus 25 ~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 25 SYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3666777777544432221 1110 1113677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 378 ECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|.++...|++++|+.+|++++++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999975 67787 599999999999999999999999999999999999999999999999
Q ss_pred CCCChh
Q 002273 455 DPDSRN 460 (944)
Q Consensus 455 ~P~~~~ 460 (944)
+|.+.+
T Consensus 174 ~~~~~~ 179 (198)
T PRK10370 174 NSPRVN 179 (198)
T ss_pred CCCCcc
Confidence 998653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-11 Score=117.54 Aligned_cols=386 Identities=14% Similarity=0.069 Sum_probs=232.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (944)
..+.+..+|++|++++..-.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (944)
Q Consensus 136 ~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (944)
+......... .. ....++...+.+.+..+++..+....++.-. .+.+....+.|.+.++.|+++.|++-|+
T Consensus 98 LrV~~~~~D~----~~---L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 98 LRVAFLLLDN----PA---LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHhcCC----HH---HHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHH
Confidence 9887665432 11 1233444455566677777777766654321 2456777888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcH-------------------------HHHHHHH
Q 002273 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFE-------------------------IAKNNMA 266 (944)
Q Consensus 216 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~-------------------------~~~~~la 266 (944)
.+++...-++-.-++++.++++.+++..|+++....++. .|... .+.+..+
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 888887777778888888888888888888877666543 33210 0111111
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCc-----hh--HHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQS-----PF--FELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~-----~~--~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 339 (944)
-++.+.++.+.++..+.. .++.... .+ ..+....+++.+..+-+.-.+.++|--.+..-++-.+|++..-|
T Consensus 249 AIeyq~~n~eAA~eaLtD--mPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTD--MPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhc--CCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 111122211111111000 0000000 00 11122234445555555555666665556666666666666555
Q ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHH--c---CCH
Q 002273 340 DMAIVFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNL-GVVYTV--Q---GKM 407 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~-----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~--~---g~~ 407 (944)
+-|...+.+ +|+. ....+.+-..+. ..-..++|.+-+.+.-..- ..-+..+ +.+... . ...
T Consensus 327 ~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 327 DLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHH
Confidence 555444322 2221 112222222222 2234444444433322111 0001111 111111 1 112
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
..|++.|++++++. ..+....+++|+...++..+.+.|++..+...++....
T Consensus 400 R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 400 RKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceee
Confidence 33455555555542 44567778888888888888888888888776664433
|
|
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=145.05 Aligned_cols=165 Identities=21% Similarity=0.143 Sum_probs=129.9
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhccc
Q 002273 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762 (944)
Q Consensus 683 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 762 (944)
++|..--...|..+.+++++..+.++.|+.+|+++|.+ ...+.+++.+++.|+ .++|.|.|.++ ..+....|..
T Consensus 191 i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~l~~~~~~ 264 (367)
T cd05844 191 ILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDG----PLLAALEALARALGL-GGRVTFLGAQP-HAEVRELMRR 264 (367)
T ss_pred EEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCc----hHHHHHHHHHHHcCC-CCeEEECCCCC-HHHHHHHHHh
Confidence 33333335689999999999999999999999999865 455678888889999 58999999987 6789999999
Q ss_pred ccEEecCCC-------CCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccc--cCCHHHHHHHHHHHhcC
Q 002273 763 MDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI--AKNEDEYVQLALQLASD 831 (944)
Q Consensus 763 ~Di~Ld~~~-------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d 831 (944)
+|+++-|.- .+.|++.+|||++|+|||+ +++++ .++.. |-..++ ..|++++++...++.+|
T Consensus 265 ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~-------s~~~~~~e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 265 ARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA-------TRHGGIPEAVED-GETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred CCEEEECcccCCCCCccCCchHHHHHHHcCCCEEE-------eCCCCchhheec-CCeeEEECCCCHHHHHHHHHHHHcC
Confidence 999988764 3568999999999999998 44441 01111 111233 35899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
++.+.+++.+.++.+.+ .|+++.++..+++
T Consensus 337 ~~~~~~~~~~a~~~~~~--~~s~~~~~~~l~~ 366 (367)
T cd05844 337 PDLRARMGAAGRRRVEE--RFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHHHHH--HCCHHHHHHHHhc
Confidence 99999999988887643 4999999988875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-11 Score=141.97 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=209.8
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
.-.|...+++..++..+...+++++|+.+++..++..|+....++.+|.++++.++++++... .++..-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 445668899999999999999999999999999999999999999999999999997776655 4444333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (944)
...++ .+++++...+...+.+.. +++.+|.+|.+.|+.++|...|+++++.+|+++.++.++|..|
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~~k~-------Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGENKL-------ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhhhhH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 33344 455555555555666554 4888999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-hhhhhhhH
Q 002273 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL-GTKTYGRA 280 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~~a 280 (944)
... +.++|++++.+++.. +...+++.++.+++++.+..+|++......+-...... +
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~------- 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE------- 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-------
Confidence 999 999999999999876 66778999999999999999999877655443222111 1
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
.......+.-+-..|...+++++++.+++.+++.+|.+..+.
T Consensus 219 --------------------------------------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 219 --------------------------------------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred --------------------------------------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 011234455555667777777777777777777777777777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 424 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 424 (944)
..++.+|. ++|.. ...++..+++.. +-..-.++..|+..|++.+..++.+
T Consensus 261 ~~l~~~y~--~kY~~-~~~~ee~l~~s~-----------l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 261 EELIRFYK--EKYKD-HSLLEDYLKMSD-----------IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHH--HHccC-cchHHHHHHHhc-----------cccCCccHHHHHHHHHHHeeecCCC
Confidence 77777776 33332 344444443311 0001134566777777776665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=112.98 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=156.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.++...++-....+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44455666677777888999999999999999888999999999999999999999999999999999999888777655
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
.++...|+ -.+|++.+...++..+.+.++|..++.+|...|+|++|.-+|
T Consensus 128 Ailka~GK------------------------------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 128 AILKAQGK------------------------------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HHHHHcCC------------------------------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 55544444 478999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 347 ELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
++++-+.|.++..+..+|.+++-+| +++-|.++|.++++++|.+...++.+-.+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 9999999999998889998888766 6777889999999999877777766655443
|
|
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.4e-12 Score=138.38 Aligned_cols=319 Identities=14% Similarity=0.143 Sum_probs=193.8
Q ss_pred EEEeecCCCc-cCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEec----------cCCCHHH
Q 002273 512 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 580 (944)
Q Consensus 512 riGy~S~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~----------~~~~~~~ 580 (944)
||.++.+.+. .--+...+..+.......+++|++++....... .......+ .+..+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDPKI-----KVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCCcc-----ceeecccccccchhccccchHH
Confidence 4667777766 333334445555555556788888876543200 00001100 11111 1123467
Q ss_pred HHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC------------CCCccEEEecCCCCCcccccc
Q 002273 581 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 648 (944)
Q Consensus 581 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g------------~~~~Dy~i~d~~~~p~~~~~~ 648 (944)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++..-..-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8889999999999977766 111222222222244333222222211 345677765321111112233
Q ss_pred cccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHH
Q 002273 649 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 726 (944)
Q Consensus 649 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 726 (944)
+..++..+|+.. ..... ... ..++..+|++++ ...|..+.++++|.++.+..|+.+|++.|.+ ..
T Consensus 154 ~~~~~~vi~~~~-~~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~ 220 (348)
T cd03820 154 FNKNVVVIPNPL-PFPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PE 220 (348)
T ss_pred CCCCeEEecCCc-Chhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CC
Confidence 456677777532 11111 000 123334455554 3488999999999999988999999999865 23
Q ss_pred HHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHH
Q 002273 727 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 805 (944)
Q Consensus 727 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l 805 (944)
+..+.+.+.+.|+ .++|.|.|. ..+....|..+|+++-|..+ +.|++++|||++|+|||+...... ...+
T Consensus 221 ~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-----~~~~ 291 (348)
T cd03820 221 REALEALIKELGL-EDRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG-----PSEI 291 (348)
T ss_pred HHHHHHHHHHcCC-CCeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCc-----hHhh
Confidence 4556667788888 589999987 46788889999999988866 669999999999999998431111 1112
Q ss_pred hhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 806 TKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 806 ~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
..-|-..++. .|++++++...++.+|++.++++++..++.. + .|+++.+++.++
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 347 (348)
T cd03820 292 IEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA-E--RFSIENIIKQWE 347 (348)
T ss_pred hccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-H--HhCHHHHHHHhc
Confidence 2223233443 4679999999999999999999999886543 2 388988887764
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=138.39 Aligned_cols=336 Identities=16% Similarity=0.064 Sum_probs=200.7
Q ss_pred EEEeecCCCc-cCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEe-ccCCCHHHHHHHhHhCC
Q 002273 512 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRD-IYGIDEKKVAAMVREDK 589 (944)
Q Consensus 512 riGy~S~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~d~ 589 (944)
+|+++++..- .--+..++..+.........++.++........... .... ....... ........+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY-GGEQ---EVVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC-CCcc---cceeeeecCCchhHHHHHHHHhhcC
Confidence 4778877543 233456666666666666677777754432111000 0000 0001111 12233456788899999
Q ss_pred ccEEEecCCCC--CCCchhhhc----cCCcceeeecccC-CCCCC----------CCCccEEEecC-CCCCccccccccc
Q 002273 590 IDILVELTGHT--ANNKLGMMA----CQPAPVQVTWIGY-PNTTG----------LPTIDYRITDS-LADPPETKQKHVE 651 (944)
Q Consensus 590 idilvdl~g~t--~~~~~~~~a----~r~ApvQ~~~~G~-p~t~g----------~~~~Dy~i~d~-~~~p~~~~~~~~e 651 (944)
+||++-...+. .......+. .+..|+-++.-++ +.... +...|.+++.. -..-.-....+.+
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 156 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPE 156 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCC
Confidence 99998644222 111111111 2556776665554 21111 12346655442 0000000122357
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHH-H
Q 002273 652 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-H 728 (944)
Q Consensus 652 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~ 728 (944)
++..+|+..-...+. ............+.++++++++ ..|..+.+++++.++....|+.+|++.|.+....... .
T Consensus 157 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 157 KIAVIPHGVPDPPAE--PPESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred cEEEeCCCCcCcccC--CchhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhh
Confidence 888888643111111 0000011122334455666664 4788899999999999999999999998653221111 1
Q ss_pred HHHHHHHHcCCCCCcEEEccC-ccCcHHHHHhcccccEEecCCCCC---CcccHHHhhhcCCcEEecCCCcccccchhH-
Q 002273 729 RFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVGVS- 803 (944)
Q Consensus 729 ~~~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Di~Ld~~~~~---~~~t~~eal~~gvPvvt~~g~~~~~r~~~~- 803 (944)
...+.+++.|+ .++|.|.|. ++ ..+....|+.+|+++-|+.+. .+.+.+|||++|+|||+ +.+++.
T Consensus 235 ~~~~~i~~~~~-~~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~-------~~~~~~~ 305 (366)
T cd03822 235 EAYALAERLGL-ADRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIS-------TPVGHAE 305 (366)
T ss_pred hhHhHHHhcCC-CCcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEe-------cCCCChh
Confidence 11134678898 589999987 65 688999999999999887554 57899999999999999 444421
Q ss_pred HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 804 LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 804 ~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
.+.. +-..++. .|.+++++....+.+|++.+.++++..+.... . |+++.+++.+.++|+
T Consensus 306 ~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 306 EVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred eeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 1111 2233443 57999999999999999999999999988764 3 999999999998873
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=123.40 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 378 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 378 (944)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455689999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 426 (944)
.++++++.+|+++.+++.+|..+...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999886543
|
|
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-11 Score=134.49 Aligned_cols=334 Identities=12% Similarity=0.034 Sum_probs=201.9
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhh--HHHHHHHhhhCCceEeccCCCHHH---H----H
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 582 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~---~----a 582 (944)
||.++++.+..--+...+..+....++.+.|+.+|......+... .++...+ . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--g~~~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q--GADI---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c--CCCC---CCCHHHHHHHHHHHH
Confidence 477788877777788888888888888889999887654332111 1111111 0 1111 232221 1 1
Q ss_pred HH----hHhCCccEEEecCCCCCCC-chhhhccC-CcceeeecccCCCCC----------CCCCccEEEecCCCCCcccc
Q 002273 583 AM----VREDKIDILVELTGHTANN-KLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETK 646 (944)
Q Consensus 583 ~~----i~~d~idilvdl~g~t~~~-~~~~~a~r-~ApvQ~~~~G~p~t~----------g~~~~Dy~i~d~~~~p~~~~ 646 (944)
.. +...+.||++- |+... -+..+..+ ..|+=+++-+...+. .+...|.+++-. +....
T Consensus 75 ~~~~~~~~~~~~Dvv~~---h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~ 148 (372)
T cd03792 75 ENAERPLLDLDADVVVI---HDPQPLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVP 148 (372)
T ss_pred HHhccccccCCCCEEEE---CCCCchhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcC
Confidence 11 22568999963 22221 12222222 455433332211110 012245444321 11112
Q ss_pred cccccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEec
Q 002273 647 QKHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKC 718 (944)
Q Consensus 647 ~~~~e~~~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 718 (944)
..+..+.+.+|+..=...+. ...+ ..+...+++.+..+++.+.|. .|..+.+++++..+.+..|+.+|+++|
T Consensus 149 ~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G 228 (372)
T cd03792 149 PQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVG 228 (372)
T ss_pred CCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence 22332333666532111000 0000 011123455666778888865 899999999999999888999999998
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCCCCcEEEccCcc-CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCc
Q 002273 719 KPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 795 (944)
Q Consensus 719 ~~~~~~~-~~~~~~~~~~~~gi~~~rv~~~~~~~-~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~ 795 (944)
.+...+. ....+.+..+..|+ .++|.|.+..+ ...+....|+.+|+++-|..+ +.|.+++|||++|+|||+
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~----- 302 (372)
T cd03792 229 SGATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA----- 302 (372)
T ss_pred CCCCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE-----
Confidence 7643222 22223333345677 47899988763 357788889999999988766 669999999999999998
Q ss_pred ccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 796 HAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 796 ~~~r~~~-~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
++++. .-.-.-|...+++.+.++......++.+|++.++.+++..++.... .|+++..++.+.+.|+.
T Consensus 303 --s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 303 --GPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRE--NFLITRHLKDYLYLISK 371 (372)
T ss_pred --cCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHh
Confidence 44431 1111224455667888888888888999999999999999887643 49999999999999875
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-10 Score=139.10 Aligned_cols=349 Identities=13% Similarity=-0.014 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------CHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (944)
......+..+...|++..+..+++.+-. ....++......+.++...|++++|...+.++....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4455567777888888887777665411 11234555677888889999999999999988764221 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 192 (944)
...++.++...|++++|...+++++...+.... ...+.+...+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788899999999999999999986554322 223445677889999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..........
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-- 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ-- 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH--
Confidence 5678899999999999999999999875221 223456788999999999999999999987644221110
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC---HHHH----HHHHHHHHHcC
Q 002273 265 MAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEML 337 (944)
Q Consensus 265 la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~g 337 (944)
....+..++ .+....|++++|...+.++....... .... ......+...|
T Consensus 611 ~~~~~~~la-----------------------~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 611 QLQCLAMLA-----------------------KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred HHHHHHHHH-----------------------HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 111111122 12556788899999999987653321 1111 11224455688
Q ss_pred ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCH
Q 002273 338 KFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~ 407 (944)
+.++|...+.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999998877665332222 2256789999999999999999999987632 2345788899999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 002273 408 DAAAEMIEKAIAANPTY 424 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~ 424 (944)
++|...+.+++++....
T Consensus 748 ~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 748 SEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999986543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-11 Score=118.78 Aligned_cols=176 Identities=22% Similarity=0.211 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002273 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323 (944)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~ 323 (944)
+...+-+....+|++..+ .+++..+...|.. +.+..+..++...+|.+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a------------------------------~~~l~~~~~~~~~~~~d~ 100 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDA------------------------------DSSLAVLQKSAIAYPKDR 100 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccc------------------------------cchHHHHhhhhccCcccH
Confidence 445555555566666665 5555554444333 666666667677777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
..+..+|...+..|++.+|+..+.++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 78878889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
.|+++.|..++..+....+.+..+..+|+.+....|++.+|.+.-.+
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999988888899999999999999999999877554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-09 Score=112.56 Aligned_cols=376 Identities=14% Similarity=0.159 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
+..|+.....+..+|+...-...|.++|..-|- +...|-..-......+-.+-++..|++.++.+|...+ .....
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHH
Confidence 457778888899999999999999999998773 5566766666777788888999999999999987643 33455
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-------CChhH-------------------------------HhHHHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADP-------SYKPA-------------------------------AECLAIVLTDLGTSL 167 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p-------~~~~~-------------------------------~~~la~~~~~lg~~~ 167 (944)
+...++.++|.+.|...+..+. .+... ...++.++..|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 6778888888888877654321 11111 112345677899999
Q ss_pred HHcCChHHHHHHHHHHHhhCC---CCHHHHHHH------------H----------------------------------
Q 002273 168 KLAGNTQDGIQKYYEALKIDP---HYAPAYYNL------------G---------------------------------- 198 (944)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a---------------------------------- 198 (944)
.+.|.+++|...|+++++.-- +...++... .
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 999999999999999987521 111111000 0
Q ss_pred ----------------HHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 199 ----------------VVYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 199 ----------------~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.+-...|+..+-+..|.++++ .+|. -...|..+|..|...|+.+.|...|+++.+..-
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 011112334444444444443 2222 224555666666666666666666666665533
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC---------------
Q 002273 257 NFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--------------- 321 (944)
Q Consensus 257 ~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~--------------- 321 (944)
.... .|+.+++.. +++-....+++.|+.+.+++......
T Consensus 419 ~~v~---dLa~vw~~w-----------------------aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 419 KTVE---DLAEVWCAW-----------------------AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred cchH---HHHHHHHHH-----------------------HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 2211 111222111 12223344455555555554432111
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 002273 322 ---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNN 396 (944)
Q Consensus 322 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 396 (944)
+..+|..++......|-++.....|++.+.+.--.|.+..+.|..+....-++++.+.|++.+.+. |.-.++|..
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 123445555555555555555556666655555555555555655555555566666666555553 233333332
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 397 LGVVY---TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 397 la~~~---~~~g~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
+-..+ +.--+.+.|...|++|++.-|.. -.++...+.+-.+-|-...|+..|++|-
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22111 12234555666666666554421 1233444445555555555555555543
|
|
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-11 Score=135.04 Aligned_cols=325 Identities=16% Similarity=0.113 Sum_probs=196.1
Q ss_pred EEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEec--cC-----CCHHHHHHHh
Q 002273 513 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI--YG-----IDEKKVAAMV 585 (944)
Q Consensus 513 iGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~--~~-----~~~~~~a~~i 585 (944)
|.++.+.+..=-+...+..+.......++++.+++.....+ ....++.. .-....+ .. .....+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~~----~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEEA----GVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHhc----CCeEEEEecccccccHHHHHHHHHHH
Confidence 44555555433344455566777766778888776543221 11122210 0011111 11 0124577888
Q ss_pred HhCCccEEEecCCCCCCCchhhhcc-CCcceeeecccCCCCCC--------------CCCccEEEecCCCCCcccc----
Q 002273 586 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK---- 646 (944)
Q Consensus 586 ~~d~idilvdl~g~t~~~~~~~~a~-r~ApvQ~~~~G~p~t~g--------------~~~~Dy~i~d~~~~p~~~~---- 646 (944)
+..++||++-...++.......... +-.|+-.+..+.....+ ....|.+++- .+...
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----s~~~~~~~~ 152 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVAN----SAAAAEYHQ 152 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEec----cHHHHHHHH
Confidence 8999999986554432211111111 34455554444443321 1223443321 11111
Q ss_pred --cccccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecC
Q 002273 647 --QKHVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCK 719 (944)
Q Consensus 647 --~~~~e~~~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~ 719 (944)
..-.+++..+|+..-. +.+..... ..+...+++++.++|+.+++. .|..+.+++++.++....|+.+|++.|.
T Consensus 153 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~ 232 (365)
T cd03807 153 AIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGD 232 (365)
T ss_pred HcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1223566666653211 11111100 011223455666777777754 7889999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHH-HcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCccc
Q 002273 720 PFCCDSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA 797 (944)
Q Consensus 720 ~~~~~~~~~~~~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~ 797 (944)
+.. ...+..... ..|+ .++|.|.|.. .+....|..+|+++-|..+ +.|++.+|||++|+|||+
T Consensus 233 ~~~----~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~------- 297 (365)
T cd03807 233 GPD----RANLELLALKELGL-EDKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVA------- 297 (365)
T ss_pred Ccc----hhHHHHHHHHhcCC-CceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEE-------
Confidence 532 223333333 7788 5899999864 4677888999999988876 779999999999999999
Q ss_pred ccchh--HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 798 HNVGV--SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 798 ~r~~~--~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++.++ .++.. ..++ ..|.+++++....+.+|++.+..+++..++...+ .|++..+++.++++|+
T Consensus 298 ~~~~~~~e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 298 TDVGDNAELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEE--NFSIEAMVEAYEELYR 365 (365)
T ss_pred cCCCChHHHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 44441 11111 2222 3589999999999999999999999998887654 4999999999999884
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=138.60 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=132.6
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 677 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 677 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
+++.+..+++...+ ..|..+.++++|.++.+..|+.+|+++|.+... ....+.+.+.+...| ++|.|+|.
T Consensus 188 ~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~ 264 (380)
T PRK15484 188 NISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLGG 264 (380)
T ss_pred CCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeCC
Confidence 44444455665554 589999999999999999999999999865321 223445555555554 57999999
Q ss_pred ccCcHHHHHhcccccEEecCCC--CCCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCccc-c--cCCHHHHH
Q 002273 750 ILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHL-I--AKNEDEYV 822 (944)
Q Consensus 750 ~~~~~~~~~~~~~~Di~Ld~~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~-v--~~~~~~y~ 822 (944)
++ ..+....|+.+|+++-|+. .+.|.+.+|||+||+|||+ ++.|+. ++. -|...+ + ..|++++.
T Consensus 265 ~~-~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~-------s~~gg~~Eiv~-~~~~G~~l~~~~d~~~la 335 (380)
T PRK15484 265 QP-PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLA-------STKGGITEFVL-EGITGYHLAEPMTSDSII 335 (380)
T ss_pred CC-HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEE-------eCCCCcHhhcc-cCCceEEEeCCCCHHHHH
Confidence 86 6788999999999988775 4568999999999999999 555410 111 133333 3 35889999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 823 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 823 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
+...+|.+|++. .++++..|+...+ .|+++.+++.+++.|.+.
T Consensus 336 ~~I~~ll~d~~~-~~~~~~ar~~~~~--~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 336 SDINRTLADPEL-TQIAEQAKDFVFS--KYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHcCHHH-HHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 999999999974 6788888877653 499999999999999764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-08 Score=111.90 Aligned_cols=405 Identities=15% Similarity=0.134 Sum_probs=248.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHhcCCC
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ--------NMGRLAFDSFSEAVKLDPQ 114 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~ 114 (944)
..|.+...|+........ .-..+-.-+|+++++.-|.+...|+..-..-..+ ..|+.--.+|++++-.--+
T Consensus 22 Rnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk 100 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK 100 (835)
T ss_pred cCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc
Confidence 456677777776554333 3345566789999999999988887655332211 2345556677777765566
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
-+.+|......+..+|+...-...|.+++..-|-.... .++-..-......+-.+-++..|++.++..|...+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~-----rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e-- 173 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD-----RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE-- 173 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc-----cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH--
Confidence 77889999999999999999999999999877753221 12222233344556677888888888888876533
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC---------------------CHHHHH
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALE------------------------RPM---------------------YAEAYC 229 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~------------------------~p~---------------------~~~~~~ 229 (944)
.....+...+++++|.+.|...+.. +|+ -...|.
T Consensus 174 -eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 -EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred -HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 3344566777777777777666431 121 124678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHH-----HHHHhh-------hhhhhhHHH------------
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAI-----ALTDLG-------TKTYGRALL------------ 282 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~-----~l~~~~-------~~~~~~a~~------------ 282 (944)
.||..|.+.|.+++|...|++++..-- +....+...+. +-..++ +......+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 889999999999999999999887532 22222221111 111111 000000000
Q ss_pred --------HHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 283 --------LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY-NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 283 --------~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
..+.+..+.....-..-...++..+-+..|.++++. +|.. ...|..+|..|...|+.+.|...|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 001111111111223334456667777777776653 4432 35677777777777777777777777
Q ss_pred HHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCC
Q 002273 349 AFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------------------FSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 349 al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~ 406 (944)
+.+..-. -..+|...|..-....+++.|.++.++|...-.. +..+|..++......|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 7766422 2566777777777777777777777776644111 12356666666666777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
++.....|++.+++.--.+....+.|..+....-+++|.+.|++.+.+.+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 77777777777776666666667777777666667777777777666643
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-11 Score=114.45 Aligned_cols=171 Identities=17% Similarity=0.136 Sum_probs=137.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.++...|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...-.+...+|+..+|++.+.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45557777777777777788888888888888888888888888888888888888888777777778888888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g---~~~eA~~~~~~al~l~P~~ 458 (944)
..++..+.+.++|..++.+|...|+|++|.-++++.+-..|.++-.+..+|.+++-+| +++-|.++|.++++++|.+
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 8888888888888888888888888888888888888888888888888888877766 5677888888888888877
Q ss_pred hhhhhhHHHHhhhc
Q 002273 459 RNAGQNRLLAMNYI 472 (944)
Q Consensus 459 ~~a~~~~~~~~~~~ 472 (944)
..+.....++.+.+
T Consensus 225 ~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 225 LRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666655554
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=139.62 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=133.9
Q ss_pred CCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 676 PALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.++.++..+++++++ ..|....++++|.++... ++.+|++.|.+. ....+++.+.+.|+ .++|.|.|...
T Consensus 191 ~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~----~~~~~~~~~~~~~~-~~~v~~~g~~~-- 262 (371)
T cd04962 191 LGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGP----ERSPAERLARELGL-QDDVLFLGKQD-- 262 (371)
T ss_pred cCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCc----CHHHHHHHHHHcCC-CceEEEecCcc--
Confidence 345556666777775 489999999999998766 568999988662 34567777888898 48999999753
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhc
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 830 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~ 830 (944)
+....|..+|+++-|..+ +.|.+.+|||++|+|||+........ ++.. |-..+++ .|.+++++....+.+
T Consensus 263 -~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e-----~i~~-~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 263 -HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE-----VVKH-GETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----hhcC-CCceEEcCCCCHHHHHHHHHHHHh
Confidence 566778889999988865 77999999999999999833221111 1111 2233433 388999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
|++.+..+++..++...+. |+++.++..+++.|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 336 DDELWQEFSRAARNRAAER--FDSERIVPQYEALYRRL 371 (371)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 9999999999998875433 99999999999999863
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=140.30 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=151.6
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC--ceEEEecCCCCC
Q 002273 650 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 723 (944)
Q Consensus 650 ~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~ 723 (944)
.+++..+|+..- .|.|.+ ....+...+++++.++|+++++. .|..+.+++++.++++..|+ .+|+++|++...
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 366777776421 122221 11112223455566677777766 78899999999999999888 788888754322
Q ss_pred H-HHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC-CCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 724 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 724 ~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
. ...+.+++..+++|+ .++|.|+|.++ ..+....|+.+|+++-|.- .+.|++.+|||++|+|||+ +++|
T Consensus 265 g~~~~~~l~~~~~~~~l-~~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~-------~~~~ 335 (405)
T TIGR03449 265 GLATPDALIELAAELGI-ADRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVA-------ARVG 335 (405)
T ss_pred cchHHHHHHHHHHHcCC-CceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEE-------ecCC
Confidence 2 456778888899999 47999999986 6888999999999977664 4779999999999999999 5554
Q ss_pred h--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 802 V--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 802 ~--~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
+ .++.. |-..+++ .|.+++.+...++.+|++.+..+++..++.. ..|+++.+++.++++|.++.
T Consensus 336 ~~~e~i~~-~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 336 GLPVAVAD-GETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA---AGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred CcHhhhcc-CCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHh
Confidence 1 11111 2233443 4999999999999999999999999988764 24999999999999998764
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=143.33 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=138.0
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++++.+++. .|..+.+++++..+.+..|+.+|+++|.+...+...+.+++.+++.|+ .++|.|+|. .+..
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G~----~~v~ 365 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTGF----QNVK 365 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcCC----ccHH
Confidence 344567777765 788899999999999999999999998764455677888888999999 599999993 4566
Q ss_pred HhcccccEEecCCC-CCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhh-----cCCcccc--cCCHHHHHHHHHH
Q 002273 758 QAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQ 827 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~-~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~v--~~~~~~y~~~a~~ 827 (944)
..|..+||++-|.- .+.+++.+|||++|+|||+ +.+|+ .++.. .|-..++ ..|++++.+...+
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa-------td~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ 438 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA-------TDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILR 438 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE-------CCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHH
Confidence 77788999977764 4789999999999999999 55542 12222 1223333 3589999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
|.+|++.+.++++..++++.+ .|+++.++..++++|+
T Consensus 439 ll~~~~~~~~~~~~a~~~v~~--~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 439 LLKDPELRRAMGEAGRKRVER--YYTLERMIDSYRRLYL 475 (475)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 999999999999999988764 4899999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=140.68 Aligned_cols=202 Identities=17% Similarity=0.150 Sum_probs=137.2
Q ss_pred ccccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCceEEEecCCC
Q 002273 648 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPF 721 (944)
Q Consensus 648 ~~~e~~~~lp~~~~~--~~~~~~~~~-~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 721 (944)
.|.+++..+|+..-. |.|.+.... ......+..+..+++..++ ..|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 345788888864211 222211110 1111123344444554443 5899999999999999999999999998531
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC-CCCCcccHHHhhhcCCcEEecC
Q 002273 722 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 722 ~--------~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~~~~~t~~eal~~gvPvvt~~ 792 (944)
. .+..++.+.+.+... .+.++|.|+|.++ ..+....|+.+|+++-|. |++.|.+.+|||+||+|||+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIa-- 329 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGR-LDLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVG-- 329 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcc-cCcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEE--
Confidence 0 111333433333221 1358999999987 688999999999997655 67888999999999999999
Q ss_pred CCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 793 GSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 793 g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
+++++ .++.. |...+++ .|++++.+...++.+|++.+.+++++.|+.... .|+++.++..+
T Consensus 330 -----s~~~g~~e~i~~-~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 330 -----SDTAPVREVITD-GENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred -----cCCCCchhhccc-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 55541 11111 3334443 589999999999999999999999999998764 48888777654
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=137.68 Aligned_cols=173 Identities=21% Similarity=0.171 Sum_probs=133.7
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc---CCceEEEecCCCC----CHHHHHHHHHHHHH-cCCCCCcEEEc
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFC----CDSVRHRFLSTLEQ-LGLESLRVDLL 747 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~~~~~~~~----~~~~~~~~~~~~~~-~gi~~~rv~~~ 747 (944)
..++.++|+++++. .|..+.+++++.++.... |+.+|+++|++.. .....+.+.+.+++ .|+ .++|.|.
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~V~f~ 285 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-EDQVIFL 285 (392)
T ss_pred cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 44566778877754 889999999999999887 8999999986522 11234677788888 899 4999999
Q ss_pred cCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccccCCHHHHHHH
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLIAKNEDEYVQL 824 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v~~~~~~y~~~ 824 (944)
|.++ ..+....|..+|++|-|..+ +.|.+.+|||++|+|||+ +++++. ++..-+..-++..|++++.+.
T Consensus 286 g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~-------s~~~~~~e~i~~~~~g~~~~~~~~~~a~~ 357 (392)
T cd03805 286 PSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA-------CNSGGPLETVVDGETGFLCEPTPEEFAEA 357 (392)
T ss_pred CCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE-------ECCCCcHHHhccCCceEEeCCCHHHHHHH
Confidence 9987 57778889999999876655 668999999999999999 444421 222211122445689999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 825 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 825 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
...+..|++.+.++++..++.+.+. |+++.+++.|
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~ 392 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKRVKEK--FSTEAFAERL 392 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHh--cCHHHHhhhC
Confidence 9999999999999999998887544 8888887653
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-11 Score=132.48 Aligned_cols=226 Identities=18% Similarity=0.135 Sum_probs=190.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (944)
........++.++...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|+++..|..++.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34556678899999999999999999984 6677888899999999999999888888 56666666666555
Q ss_pred HHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 269 l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
..+.. -|++|.++.+.. +..+...+|......++|+++.++++.
T Consensus 467 ~~d~s------------------------------~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 467 LHDPS------------------------------LYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLER 510 (777)
T ss_pred ccChH------------------------------HHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHH
Confidence 43322 124444444332 345677777777888999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
.++++|-....|+.+|.+..+.++++.|.++|..++.++|++.++|++++..|.+.++-.+|...++++++.+-++..+|
T Consensus 511 sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 511 SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.|...+..+.|.+++|++.|.+.+.+.-+..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999988755433
|
|
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-11 Score=133.09 Aligned_cols=317 Identities=15% Similarity=0.087 Sum_probs=187.3
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHH--Hh-hhCCceEeccCCCHHHHHHHhHhC
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK--VM-KKGGIWRDIYGIDEKKVAAMVRED 588 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~--~~-~~~~~~~~~~~~~~~~~a~~i~~d 588 (944)
||.++++.+...-+...+..+...+....++|.++................ .. ................+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 467777777554455555667777767788898887654332211100000 00 000000001112246788899999
Q ss_pred CccEEEecCCCCCCCchhhhccC-CcceeeecccCCCCCCC-------------CCccEEEecCCCCCccccccc---cc
Q 002273 589 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKH---VE 651 (944)
Q Consensus 589 ~idilvdl~g~t~~~~~~~~a~r-~ApvQ~~~~G~p~t~g~-------------~~~Dy~i~d~~~~p~~~~~~~---~e 651 (944)
++||++-... ....-+..+..+ -.|+-+..-+.+..... ...|.+++-.-..-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999987665 222223333322 13444443333322211 445666543221111222333 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 652 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 652 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
++..+|+.. ..................++.++|+++++. .|....++++|..+....|+.+|++.|.+ .....
T Consensus 160 ~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~~~ 234 (353)
T cd03811 160 KIEVIYNPI-DIEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLREE 234 (353)
T ss_pred ccEEecCCc-ChhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccHHH
Confidence 777777542 111110000000012345666778877765 78999999999999988899999999865 34456
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHh
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLT 806 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~ 806 (944)
+.+.....|+ .++|.|.|... +....+..+|+++-|..+ +.|++.+|||++|+|||+ +++++ .++.
T Consensus 235 ~~~~~~~~~~-~~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~-------~~~~~~~e~i~ 303 (353)
T cd03811 235 LEALAKELGL-ADRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA-------TDCPGPREILE 303 (353)
T ss_pred HHHHHHhcCC-CccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEE-------cCCCChHHHhc
Confidence 6677788898 58999999854 466788889999988876 669999999999999999 44441 1111
Q ss_pred hcCCccccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 807 KVGLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 807 ~~gl~~~v~--~~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
. |-..++. .+++++ +.....+..|++.+.+++...++..
T Consensus 304 ~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 304 D-GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred C-CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 1 2223333 456666 7888888889888888887555544
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=115.24 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+.|++++..+|++..+.+.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888899999999999999999999999888876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-10 Score=130.73 Aligned_cols=327 Identities=16% Similarity=0.114 Sum_probs=195.6
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhh-HHHHHHHhhhCCceEeccCC-CHHHHHHHhHhCC
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 589 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t-~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~ 589 (944)
+|.+++..|-.- ...++......+.+.+++|.+++.....+... ...........-.......+ ....+.+.++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788776332 34456666677677788898887654322211 00000000000000000111 1235667778889
Q ss_pred ccEEEecCCCCCCCchhhhccCC--cceeeecccCCCCC---------CCCCccEEEecCCCCCccccc---ccccceEE
Q 002273 590 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTT---------GLPTIDYRITDSLADPPETKQ---KHVEELIR 655 (944)
Q Consensus 590 idilvdl~g~t~~~~~~~~a~r~--ApvQ~~~~G~p~t~---------g~~~~Dy~i~d~~~~p~~~~~---~~~e~~~~ 655 (944)
+||+.--.++. ......+..+. -|+-++..|+.... .+...|++++..-..-..... ...+++..
T Consensus 80 ~Dii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTT-PATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCc-hHHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 99987543332 12223333333 34444444433221 133467766532111111122 23466677
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHH
Q 002273 656 LPECFLCYTPSPEAGPVCPTPALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 733 (944)
Q Consensus 656 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 733 (944)
+|+.. ..... .+. + ....++.+++++++ ...|..+.+++++.++....|+.+|.+.|.+ .....+.+.
T Consensus 159 i~~~~-d~~~~--~~~--~-~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~ 228 (355)
T cd03799 159 VHCGV-DLERF--PPR--P-PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEAL 228 (355)
T ss_pred EeCCc-CHHHc--CCc--c-ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHH
Confidence 77532 11100 000 0 12223344455544 3589999999999998888899999998865 345567777
Q ss_pred HHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC-------CCCcccHHHhhhcCCcEEecCCCcccccchhHHHh
Q 002273 734 LEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 806 (944)
Q Consensus 734 ~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~ 806 (944)
+++.|+ .++|.|.|.++ .++....|..+||+|-|.. .+.|++.+|||++|+|||+........ ++.
T Consensus 229 ~~~~~~-~~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~ 301 (355)
T cd03799 229 IAELGL-EDRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE 301 (355)
T ss_pred HHHcCC-CCeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh
Confidence 788888 58899999987 6899999999999999886 467899999999999999843222111 222
Q ss_pred hcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002273 807 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 860 (944)
Q Consensus 807 ~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 860 (944)
. |-..++. .|.+++++....+..|++.+..+++..++.+.+. |+++..++.
T Consensus 302 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 354 (355)
T cd03799 302 D-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE--FDIRKQAAR 354 (355)
T ss_pred C-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHhhc
Confidence 2 2223333 3899999999999999999999999998887644 788777654
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=132.89 Aligned_cols=314 Identities=15% Similarity=0.133 Sum_probs=183.9
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCC--C----HHHHHHHh
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMV 585 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~--~----~~~~a~~i 585 (944)
||.++.+++..=-+..++..+.+.+...+++|++++...........+.. ....+..+... . ...+.+.+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLI 76 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHH
Confidence 35667777633334556666777777788999988765433222222221 11222222111 1 23566677
Q ss_pred HhCCccEEEecCCCCCCCchhhhc-cCCcceeeec-ccCCCCCCCCCcc----------EEEecCCCCCccc-ccc----
Q 002273 586 REDKIDILVELTGHTANNKLGMMA-CQPAPVQVTW-IGYPNTTGLPTID----------YRITDSLADPPET-KQK---- 648 (944)
Q Consensus 586 ~~d~idilvdl~g~t~~~~~~~~a-~r~ApvQ~~~-~G~p~t~g~~~~D----------y~i~d~~~~p~~~-~~~---- 648 (944)
+..++||++-.+.++. .-..+++ ....|+-+.+ .+...+....... +..+|.++.+... ...
T Consensus 77 ~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 155 (358)
T cd03812 77 KKNKYDIVHVHGSSAS-GFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK 155 (358)
T ss_pred hcCCCCEEEEeCcchh-HHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC
Confidence 8899999976444321 1111222 2344544332 2211111110000 1112332222221 111
Q ss_pred -cccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCC
Q 002273 649 -HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 723 (944)
Q Consensus 649 -~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 723 (944)
..+++.-+|+..-. |.+.+.............+.++++.+++. .|..+.+++++..+....|+.+++++|.+
T Consensus 156 ~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g--- 232 (358)
T cd03812 156 VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG--- 232 (358)
T ss_pred CCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC---
Confidence 23566666653110 11111110111112345566777777754 89999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh
Q 002273 724 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV 802 (944)
Q Consensus 724 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~ 802 (944)
.....+++.+++.|+ .++|.|.|. ..+....|..+|+++-|.-+ +.|.+.+|||++|+|||+ ++++.
T Consensus 233 -~~~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~-------s~~~~ 300 (358)
T cd03812 233 -ELEEEIKKKVKELGL-EDKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCIL-------SDTIT 300 (358)
T ss_pred -chHHHHHHHHHhcCC-CCcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEE-------EcCCc
Confidence 345677777888899 589999997 34667788999999988755 779999999999999998 44441
Q ss_pred H--HHhhcCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 803 S--LLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 803 ~--~l~~~gl~~~v~-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
. ++.. +..-++. .+++++.+...+|.+|++.++.++...+...
T Consensus 301 ~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 301 KEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred hhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 1 1222 2233333 4569999999999999988877766655443
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=130.96 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=134.6
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 677 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 677 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
..+++.++|+++++ ..|..+.+++++.++.+..|+.+|+++|.+. ......+.....+.|+ .++|.|.|.++ ..
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~ 273 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGL-EDRVTFTGMLY-GE 273 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCc-cceEEEcCCCC-hH
Confidence 45566667777774 4889999999999999999999999998642 2233444444578898 58999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
+....|..+|+++-|..+ +.|++.+|||+||+|||+-.+..+.. ++.. +..-++..+.+++++...++.+|++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHH
Confidence 889999999999887764 77999999999999999944332222 2222 3334556677999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.++.+++..++.+.. .|+++.+++.++
T Consensus 348 ~~~~~~~~~~~~~~~--~~s~~~~~~~~~ 374 (375)
T cd03821 348 RLKAMGENGRALVEE--RFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 999999999888654 489999888775
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=139.31 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=126.2
Q ss_pred CCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCC-----ceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 680 NGFITFGSFN--NLAKITPKVLQVWARILCAVPN-----SRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 680 ~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
++..+|.+++ .+.|.....+++|..+.+..|+ .+|+++|++.. +....+.|++.++++|+ .++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEEecCC
Confidence 3445666666 4589999999999999988875 89999986532 22456778888899999 5899999998
Q ss_pred cCcHHHHHhcccccEEecCCC-CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhh-----cCCcccccCCHHHHHHH
Q 002273 751 LLNHDHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-----VGLKHLIAKNEDEYVQL 824 (944)
Q Consensus 751 ~~~~~~~~~~~~~Di~Ld~~~-~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~-----~gl~~~v~~~~~~y~~~ 824 (944)
+ .++....|+.+|++|-|.. .+.|.+.+|||++|+|||+ ++.|+....- -|-..+++.|++++.+.
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-------~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~a 385 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA-------HASGGPLLDIVVPWDGGPTGFLASTAEEYAEA 385 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE-------EcCCCCchheeeccCCCCceEEeCCHHHHHHH
Confidence 7 6899999999999988874 4889999999999999998 4433211111 14455667899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 002273 825 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 859 (944)
Q Consensus 825 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 859 (944)
..++.+|++..+..+.+.+.+.. ..|+.+.|.+
T Consensus 386 i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 386 IEKILSLSEEERLRIRRAARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH--HhhCHHHhcc
Confidence 99999976554443343344433 3488887753
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=114.48 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (944)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666667788998888 8999999999999999999999888899998888889999999999999999999999
Q ss_pred HcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 144 ~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
...|++... +..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..|.-.|+++.|..++.++....+.
T Consensus 128 ~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 128 RLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred ccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 999998775 7778888888899999999999999999999999999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 224 YAEAYCNMGVIYKNRGDLESAIACYER 250 (944)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (944)
+..+..+++.+....|++++|.....+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 899999999999999999999876554
|
|
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=134.50 Aligned_cols=171 Identities=17% Similarity=0.206 Sum_probs=128.8
Q ss_pred CCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 677 ALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 677 ~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
+++++.++|..++ ...|..+.+++++.++....|+.+|+++|.+ ..++.+.+.+++.|+ .++|.|.|.. .
T Consensus 183 ~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~~---~ 254 (360)
T cd04951 183 GVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLRATLERLIKALGL-SNRVKLLGLR---D 254 (360)
T ss_pred CcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcHHHHHHHHHhcCC-CCcEEEeccc---c
Confidence 3455555666666 4589999999999999999999999999865 345677788888898 4899999974 4
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccccCCHHHHHHHHHHHh-c
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLIAKNEDEYVQLALQLA-S 830 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v~~~~~~y~~~a~~l~-~ 830 (944)
+....|..+|+++-|..+ +.|.+.+|||++|+|||+ ++++.. ++...|. -+...|++++++....+. .
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~-------~~~~~~~e~i~~~g~-~~~~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVA-------TDAGGVREVVGDSGL-IVPISDPEALANKIDEILKM 326 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEE-------ecCCChhhEecCCce-EeCCCCHHHHHHHHHHHHhC
Confidence 566778899999887765 669999999999999998 444410 1111111 122478999999999998 5
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++..+..++.. +..+. ..|+++.++..+++.|+
T Consensus 327 ~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 327 SGEERDIIGAR-RERIV--KKFSINSIVQQWLTLYT 359 (360)
T ss_pred CHHHHHHHHHH-HHHHH--HhcCHHHHHHHHHHHhh
Confidence 66666666666 66554 44999999999999986
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=123.06 Aligned_cols=113 Identities=29% Similarity=0.475 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++-+-.-|.-+++.++|++|+..|.+|++++|.++..|.+.|.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHh
Q 002273 437 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~ 469 (944)
.+|++++|++.|+++|+++|++.....++-.+-
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 999999999999999999999997777754443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-10 Score=122.60 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=137.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
-......+|..+...|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 4445566777777777777777777764 5566677777777777777777777776 556666777777666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
....-|++|.++.+..- +.+...+|......++++++.++++..++++|-....|+.+|.+..+.++
T Consensus 468 ~d~s~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred cChHHHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 65555555555444321 11233444445556777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
++.|.++|.+.+..+|++.++|.+++..|...++..+|...++++++.+-++...|.+...+..+.
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 777777777777777777777777777777777777777777777777666555555554444443
|
|
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-11 Score=132.03 Aligned_cols=325 Identities=16% Similarity=0.106 Sum_probs=194.1
Q ss_pred CcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHH--------H-Hhh--hCCceEeccCCCHHHHHHHhH--hCC
Q 002273 523 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE--------K-VMK--KGGIWRDIYGIDEKKVAAMVR--EDK 589 (944)
Q Consensus 523 h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~--------~-~~~--~~~~~~~~~~~~~~~~a~~i~--~d~ 589 (944)
.....++..++..+....++|++++.............. . ... ....+..........+...|+ ..+
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFR 93 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCC
Confidence 445566677777777788889988765432221110000 0 000 000000000011356788888 999
Q ss_pred ccEEEecCCCCCCCchhhhccCC--cceeeecccCCCCCC-------------CCCccEEEecCCCCCcccccc--cccc
Q 002273 590 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVEE 652 (944)
Q Consensus 590 idilvdl~g~t~~~~~~~~a~r~--ApvQ~~~~G~p~t~g-------------~~~~Dy~i~d~~~~p~~~~~~--~~e~ 652 (944)
+||++-.......... ....|. .|+-+...+...... +...|++++..-......... ...+
T Consensus 94 ~dii~~~~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 172 (377)
T cd03798 94 PDLIHAHFAYPDGFAA-ALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEK 172 (377)
T ss_pred CCEEEEeccchHHHHH-HHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCc
Confidence 9998765333332222 222222 365554444332211 223566665321111111222 4556
Q ss_pred eEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHH
Q 002273 653 LIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 727 (944)
Q Consensus 653 ~~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 727 (944)
+..+|+.. ++....+... ......++.++++++++. .|....+++++..+....|+.+|.+.|.+ ...
T Consensus 173 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~~ 245 (377)
T cd03798 173 VTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PLR 245 (377)
T ss_pred eEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cch
Confidence 77777532 1111110000 011344566677777754 78889999999999988899999998765 334
Q ss_pred HHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHh
Q 002273 728 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 806 (944)
Q Consensus 728 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~ 806 (944)
..+.+.++..++ .++|.+.|.++ ..+....+..+|+++-|..+ +.|++.+|||++|+|||+-....+.. ++.
T Consensus 246 ~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~~ 318 (377)
T cd03798 246 EALEALAAELGL-EDRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----IIT 318 (377)
T ss_pred HHHHHHHHhcCC-cceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hhc
Confidence 556666777888 57999999987 68899999999999988865 77999999999999999843221111 111
Q ss_pred hcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 807 KVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 807 ~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
. +-..++ ..|.+++++....+.+|+.. .+....+.... ..|++..++..+.++|++
T Consensus 319 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 319 D-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVA--ERFSWENVAERLLELYRE 376 (377)
T ss_pred C-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 1 222233 46899999999999999876 44444444443 338999999999988875
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-11 Score=132.36 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=131.0
Q ss_pred CCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
+.++.++++++++ ..|..+.++++|.++....|+.+|++.|.+ .....+.+...+.++ .++|.|.|.++ ..+
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~ 271 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGL-ADRVIFTGFVP-REE 271 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCC-CCcEEEeccCC-hHH
Confidence 3455566666664 468889999999999988899999999865 355667777788888 58999999987 688
Q ss_pred HHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCC-HHHHHHHHHHHhcCHH
Q 002273 756 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN-EDEYVQLALQLASDVT 833 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~-~~~y~~~a~~l~~d~~ 833 (944)
....|+.+|+++-|... ++|++.+|||+||+|||+.....+.. ++.. |-..++..+ .+++++....+.+|++
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~-----~i~~-~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPD-----LVAD-GENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhh-----heec-CceeEEeCCCCHHHHHHHHHHHhChH
Confidence 99999999999988865 77899999999999999944322211 1111 223344433 3399999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.++.+++..++..... . +.+.+++.|++
T Consensus 346 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 346 LRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 9999999888876432 1 77888888765
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=121.12 Aligned_cols=123 Identities=33% Similarity=0.507 Sum_probs=115.0
Q ss_pred HhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (944)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 232 (944)
...+|.-+..-|+-+.+.++|++|+..|.+||+++|.++..|.+.+.+|.++|.++.|++..+.++.++|.+..+|..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
.+|..+|++++|++.|+++++++|++...+.+|..+-..++..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998888887776665544
|
|
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=133.77 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=123.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHH--HhHcCCceEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~~-------~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
+..++++++++ .|..+.++++++++ +...|+.+| ++|++-..+ ...+.+.....+.|+ .++|.|.|.
T Consensus 247 ~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~l-i~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~V~f~g~ 324 (439)
T TIGR02472 247 EKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVL-VLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGKVAYPKH 324 (439)
T ss_pred CCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEE-EeCCccccccccHHHHHHHHHHHHHHHHcCC-CceEEecCC
Confidence 34456666654 89999999999864 233344332 444331111 123345566788899 589999998
Q ss_pred ccCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc--------c--
Q 002273 750 ILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL--------I-- 814 (944)
Q Consensus 750 ~~~~~~~~~~~~~~----Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~--------v-- 814 (944)
++ ..+....|+.+ |+++-|.-+ +.|.|.+|||++|+|||+ +++| |++|+ +
T Consensus 325 ~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~g-------g~~eiv~~~~~G~lv~ 389 (439)
T TIGR02472 325 HR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDG-------GPRDIIANCRNGLLVD 389 (439)
T ss_pred CC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCC-------CcHHHhcCCCcEEEeC
Confidence 76 56777777766 999877655 779999999999999999 7776 44443 3
Q ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 815 AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 815 ~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
..|++++.+...++.+|++.++++++..++++... |+++.++.++++.+
T Consensus 390 ~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 VLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRH--YSWDAHVEKYLRIL 438 (439)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 35899999999999999999999999999887544 99999999998875
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-11 Score=110.88 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-10 Score=132.50 Aligned_cols=149 Identities=14% Similarity=0.102 Sum_probs=110.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
.......|+++.++..||.+....|.+++|...++.++++.|++..+ ...++.++.+.+++++|+..+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33344567777777777777777777777777777777777777665 45556666667777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 186 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
.+|++...++.+|.++.+.|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+-...
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 7777777777777777777778888887877777777777777777777777787777777777777776554433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=108.14 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=82.6
Q ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 351 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 351 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
.+. ++..+..+.+|..++..|++++|+..|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5566677777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
++|.|+...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888877765
|
|
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=131.91 Aligned_cols=325 Identities=13% Similarity=0.105 Sum_probs=180.4
Q ss_pred cEEEeecCCCcc-CcHHHHHHhhhhhccCC--cEEEEEEeccccCChhhHHHHHHHhh---hCCceEeccC--CCHHHHH
Q 002273 511 LVIGYVSPDYFT-HSVSYFIEAPLVYHDYQ--NYKVVVYSAVVKADAKTIRFREKVMK---KGGIWRDIYG--IDEKKVA 582 (944)
Q Consensus 511 lriGy~S~d~~~-h~v~~~~~~~l~~~d~~--~fev~~y~~~~~~d~~t~~~~~~~~~---~~~~~~~~~~--~~~~~~a 582 (944)
+||.++...+.. --+..++..+...+... .++++++......+.. ..+. +.. .......... .....+.
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKA--WLKE-IKYAQSFSNIKLSFLRRAKHVYNFS 77 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChH--HHHh-cchhcccccchhhhhcccHHHHHHH
Confidence 366777654322 23445666666666666 7999888765432211 1111 100 0000000000 1135677
Q ss_pred HHhHhCCccEEEecCCCCCCCchhhhccC----Ccceeeeccc--CCCCCC-----CCCccEEEecCCCCCcccccc--c
Q 002273 583 AMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIG--YPNTTG-----LPTIDYRITDSLADPPETKQK--H 649 (944)
Q Consensus 583 ~~i~~d~idilvdl~g~t~~~~~~~~a~r----~ApvQ~~~~G--~p~t~g-----~~~~Dy~i~d~~~~p~~~~~~--~ 649 (944)
+.|++.++||++-.+.. ......++.+ |-| .++|.- .+.... +...|++++-....-.....+ -
T Consensus 78 ~~l~~~~~Dii~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~ 154 (359)
T PRK09922 78 KWLKETQPDIVICIDVI--SCLYANKARKKSGKQFK-IFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGIS 154 (359)
T ss_pred HHHHhcCCCEEEEcCHH--HHHHHHHHHHHhCCCCe-EEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCC
Confidence 88999999999753221 1122222221 222 244431 111111 223344443210000000011 1
Q ss_pred ccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC----CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHH
Q 002273 650 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 725 (944)
Q Consensus 650 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 725 (944)
.+++..+|+.. . ...... +.+. ....++|++++++ .|....+++++..+. ++.+|+++|.+ .
T Consensus 155 ~~ki~vi~N~i-d--~~~~~~---~~~~-~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g----~ 220 (359)
T PRK09922 155 AQRISVIYNPV-E--IKTIII---PPPE-RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG----S 220 (359)
T ss_pred HHHEEEEcCCC-C--HHHccC---CCcc-cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC----c
Confidence 34566666532 1 000000 1111 1234556666664 377777888777653 47899999876 3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCc-HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCccccc-chh
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLN-HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN-VGV 802 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~-~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r-~~~ 802 (944)
.++.+++..++.|+ .++|.|.|.+... +.....|..+|+++-|..+ +.|.|++|||+||+|||+ ++ +++
T Consensus 221 ~~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~-------s~~~~g 292 (359)
T PRK09922 221 DFEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS-------SDCMSG 292 (359)
T ss_pred cHHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE-------eCCCCC
Confidence 46778888889999 5899999987644 3455567899999988766 779999999999999999 44 331
Q ss_pred --HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 803 --SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 803 --~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
.++.. |...++ ..|.+++++....|.+|++.+ .+...++.+ ..|..+.|++.|-++|..+-
T Consensus 293 ~~eiv~~-~~~G~lv~~~d~~~la~~i~~l~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 293 PRDIIKP-GLNGELYTPGNIDEFVGKLNKVISGEVKY--QHDAIPNSI---ERFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred hHHHccC-CCceEEECCCCHHHHHHHHHHHHhCcccC--CHHHHHHHH---HHhhHHHHHHHHHHHHHHHh
Confidence 11211 333333 469999999999999999743 122222221 22556888888888887764
|
|
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=132.39 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=138.3
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 676 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.+++++.++++..++. .|....+++++.++ ...|+.+|+++|.+ ..++.+++.++++|++ +|.|+|.++ .
T Consensus 223 ~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g----~~~~~l~~~~~~~~l~--~v~f~G~~~-~ 294 (412)
T PRK10307 223 LGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG----GGKARLEKMAQCRGLP--NVHFLPLQP-Y 294 (412)
T ss_pred cCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC----hhHHHHHHHHHHcCCC--ceEEeCCCC-H
Confidence 3556676777777765 78889999998776 55689999999876 4567788888899994 799999987 6
Q ss_pred HHHHHhcccccEEecCCCCCC-----cccHHHhhhcCCcEEecCCCcccccchh----HHHhhcCCcccc-cCCHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAHNVGV----SLLTKVGLKHLI-AKNEDEYVQ 823 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~-----~~t~~eal~~gvPvvt~~g~~~~~r~~~----~~l~~~gl~~~v-~~~~~~y~~ 823 (944)
++....|+.+||++-|+-..+ ++...|+|+||+|||+ ++.+. .+.. +..-++ ..|++++.+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~-------s~~~g~~~~~~i~--~~G~~~~~~d~~~la~ 365 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVA-------TAEPGTELGQLVE--GIGVCVEPESVEALVA 365 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEE-------EeCCCchHHHHHh--CCcEEeCCCCHHHHHH
Confidence 788999999999987775533 3346899999999999 44321 1222 322233 368999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 824 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 824 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
...+|.+|++.+..+++..++...+ .|+++..++.+++.|+++..
T Consensus 366 ~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 366 AIAALARQALLRPKLGTVAREYAER--TLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988753 49999999999999998653
|
|
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=130.94 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=135.5
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcc-CccCc
Q 002273 677 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILLN 753 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~-~~~~~ 753 (944)
+++++.++|+.+.++ .|..+.+++++.++. ++.+|++++++...+...+.+++.+...+...++|+|.+ .++ .
T Consensus 196 ~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 271 (388)
T TIGR02149 196 GIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP-K 271 (388)
T ss_pred CCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-H
Confidence 455666677777765 688999999988864 567888876654455567778888888888667788764 454 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCH------HHHH
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNE------DEYV 822 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~------~~y~ 822 (944)
.+....|..+||+|-|+.+ +.|.+.+|||++|+|||+ +++|. .++.. |...++. .|. +++.
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~-------s~~~~~~e~i~~-~~~G~~~~~~~~~~~~~~~~l~ 343 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVA-------SATGGIPEVVVD-GETGFLVPPDNSDADGFQAELA 343 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEE-------eCCCCHHHHhhC-CCceEEcCCCCCcccchHHHHH
Confidence 8899999999999988866 779999999999999999 55541 11111 2222332 344 7899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 823 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 823 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
+....+..|++.++.+++..++...+. |+++.++.++.+.|+++
T Consensus 344 ~~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 344 KAINILLADPELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhh
Confidence 999999999999999999988876544 99999999999999875
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=134.35 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=130.4
Q ss_pred CCCCC---CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 676 PALTN---GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 676 ~~~~~---~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
.+++. +.++||++.|+ .|..+.+++++.+++. ++.+|+|+|.|- .......+.....++|+ .+||.|.+..
T Consensus 770 lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l-~drV~FlG~~ 845 (977)
T PLN02939 770 LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQS-NNNIRLILKY 845 (977)
T ss_pred hCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCC-CCeEEEEecc
Confidence 45552 56789999976 8999999999999885 688999988652 22445677788888898 5899999875
Q ss_pred cCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc---------------
Q 002273 751 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--------------- 814 (944)
Q Consensus 751 ~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--------------- 814 (944)
. ...-...|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.|
T Consensus 846 d-e~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-------s~vG-------GL~DtV~d~d~e~i~~eg~NG 910 (977)
T PLN02939 846 D-EALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-------RKTG-------GLNDSVFDFDDETIPVELRNG 910 (977)
T ss_pred C-HHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-------ecCC-------CCcceeecCCccccccCCCce
Confidence 4 23334688999999988877 889999999999988887 6666 554433
Q ss_pred ----cCCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 815 ----AKNEDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 815 ----~~~~~~y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
..|++++.....++. .|++.+.++++.. +. ..|+++.++..++++|+.+..+
T Consensus 911 fLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 911 FTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred EEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 247777766555543 4788888877632 32 4599999999999999999864
|
|
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=127.34 Aligned_cols=253 Identities=14% Similarity=0.116 Sum_probs=157.0
Q ss_pred hHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC-------------CCCccEEEecCCCCCc--cccccc
Q 002273 585 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPP--ETKQKH 649 (944)
Q Consensus 585 i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g-------------~~~~Dy~i~d~~~~p~--~~~~~~ 649 (944)
+...+.||++--.......-...+..+..|+-++|-+...... +...|.+|+..-..-. .....+
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~ 158 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRF 158 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCC
Confidence 5678999987433332222222333345677666654322211 1224555532100000 011233
Q ss_pred ccceEEcCCCccccCCCCCCCCCC-CCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHH
Q 002273 650 VEELIRLPECFLCYTPSPEAGPVC-PTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 726 (944)
Q Consensus 650 ~e~~~~lp~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 726 (944)
.+++..+|+..-. .......... .......+.++++++.+ ..|....+++++.++. +.+|++.|.+ ..
T Consensus 159 ~~~~~~i~~gi~~-~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~~ 229 (357)
T cd03795 159 RDKVRVIPLGLDP-ARYPRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----PL 229 (357)
T ss_pred ccceEEecCCCCh-hhcCCcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----hh
Confidence 4778888864211 1000000000 01123344455666665 5888888888887754 7899998866 35
Q ss_pred HHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC---CCCcccHHHhhhcCCcEEecCCCcccccchhH
Q 002273 727 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 803 (944)
Q Consensus 727 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~---~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~ 803 (944)
...+.+.+.+.+. .++|.|.|.++ ..+....|..||+++-|.. .+.|.+.+|||++|+|||+ +++++.
T Consensus 230 ~~~~~~~~~~~~~-~~~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~-------~~~~~~ 300 (357)
T cd03795 230 EAELEALAAALGL-LDRVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIS-------TEIGTG 300 (357)
T ss_pred HHHHHHHHHhcCC-cceEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEe-------cCCCCc
Confidence 5667777778888 58999999987 6788999999999987764 4778999999999999999 444321
Q ss_pred --HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 002273 804 --LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 857 (944)
Q Consensus 804 --~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 857 (944)
++..-|-..++. .|.+++++....+.+|++.++.++...++.+.+. |+...+
T Consensus 301 ~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~ 356 (357)
T cd03795 301 GSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEE--FTADRM 356 (357)
T ss_pred hhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHh--cchHhh
Confidence 111113333343 5899999999999999999999999999887543 776654
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=121.01 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=124.4
Q ss_pred CCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 679 TNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 679 ~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
.++.++|+.+++ ..|..+.+++++..+....|+.+|++.|.+......... .+...+. .++|.|.|. ..+.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~-~~~v~~~g~---~~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGL-EGRVEFLGF---RDDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCC-cceEEEeec---cccH
Confidence 345566777664 478899999999999888899999999876432222211 2455666 578999997 3567
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~ 833 (944)
...|..+|+++-|..+ +.|++.+|||++|+|||+-...... -++.. |-..++. .|++++++....+..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~-----~~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR-----EAVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch-----hhhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 8888999999988765 6699999999999999994322211 12221 2233443 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.+..++...++..... |+++.+++.++
T Consensus 332 ~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEEE--FDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 9999999888876533 89998888775
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=123.00 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+.... .++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--QLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHH
Confidence 445566677777888888888887754 567788888889999999999999998887776654433 3333322
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
.+.. -.+++++|...|++..+..+.++..+..++.++..+|++++|.+.+++++
T Consensus 175 ~l~~--------------------------g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 175 NLAT--------------------------GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHH--------------------------TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHh--------------------------CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2111 01234555555555554444555555555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCH
Q 002273 351 HFNPHCAEACNNLGVIYKDRDNL-DKAVECYQMALSIKPNFS 391 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~ 391 (944)
..+|.+++++.+++.+....|+. +.+.+++.+....+|+++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 55555555555555555555544 334444444444455443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-10 Score=124.77 Aligned_cols=166 Identities=19% Similarity=0.152 Sum_probs=124.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.+.|+..... .|..+.++++|..+.+. .|+.++++.|.+.. ... .++ .++|.|+|.+++..+...
T Consensus 193 ~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~--~~~---------~~~-~~~v~~~g~~~~~~~~~~ 260 (365)
T cd03825 193 IILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP--EIP---------PDL-PFPVHYLGSLNDDESLAL 260 (365)
T ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch--hhh---------ccC-CCceEecCCcCCHHHHHH
Confidence 3455665544 89999999999987665 68899999876521 111 145 478999999876667888
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~ 835 (944)
.|..+|++|-|.-+ +.|.+++|||.+|+|||+.....+..- +.. +-..++. .|.+++++....+.+|++.+
T Consensus 261 ~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~-----~~~-~~~g~~~~~~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 261 IYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI-----VDH-GVTGYLAKPGDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred HHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh-----eeC-CCceEEeCCCCHHHHHHHHHHHHhCHHHH
Confidence 89999999988755 889999999999999998432222211 111 1123332 37899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.++++..++.... .|+++.+++.++++|++
T Consensus 335 ~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 335 EELGEAARELAEN--EFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhh
Confidence 9999999887643 48999999999999976
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=127.67 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=121.9
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
.+++.++|+.+.+. .|..+.+++++..+.. |+.+|++.|.+... ....... +. .++|.|.|.++ ..+
T Consensus 187 ~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~----~~~~~~~---~~-~~~v~~~g~~~-~~~ 255 (359)
T cd03823 187 PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLEL----EEESYEL---EG-DPRVEFLGAYP-QEE 255 (359)
T ss_pred CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhh----hHHHHhh---cC-CCeEEEeCCCC-HHH
Confidence 44556677776654 7888889999988776 89999998865321 1111111 44 47899999987 689
Q ss_pred HHHhcccccEEecCCC--CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcC
Q 002273 756 HMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASD 831 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d 831 (944)
....|..+|+++-|.. .+.|.+.+|||++|+|||+-...... .++.. |...++ ..|.+++++....+.+|
T Consensus 256 ~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 256 IDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-----ELVRD-GVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-----HHhcC-CCcEEEECCCCHHHHHHHHHHHHhC
Confidence 9999999999998874 47788999999999999994322111 11222 222333 34589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++.++.+++..++.... +.+++.++++|+
T Consensus 330 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 358 (359)
T cd03823 330 PDLLERLRAGIEPPRSI------EDQAEEYLKLYR 358 (359)
T ss_pred hHHHHHHHHhHHHhhhH------HHHHHHHHHHhh
Confidence 99999999988887532 888899988885
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=122.94 Aligned_cols=257 Identities=18% Similarity=0.107 Sum_probs=184.5
Q ss_pred HHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 167 LKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (944)
++-.|+|.+++..++ ....++ ........+.+++..+|+++..+..... ..+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 445689999987766 222233 2345667788889999998876655433 22333455566666666556666776
Q ss_pred HHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002273 246 ACYERCLAVSPN--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323 (944)
Q Consensus 246 ~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~ 323 (944)
..++..+..... +.......+.+ +...|++++|++.+.+. .+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i------------------------------~~~~~~~~~AL~~l~~~-----~~l 131 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATI------------------------------LFHEGDYEEALKLLHKG-----GSL 131 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHH------------------------------HCCCCHHHHHHCCCTTT-----TCH
T ss_pred HHHHHHHHhccccccHHHHHHHHHH------------------------------HHHcCCHHHHHHHHHcc-----Ccc
Confidence 666554433222 22222222222 44567788888887653 567
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
+.......++...++++.|.+.++.+.+.+.+..-.....+++....| ++.+|...|++..+..+..+..+..++.++
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 888888999999999999999999999988877666666666666655 699999999998888888899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChhhh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~-~eA~~~~~~al~l~P~~~~a~ 462 (944)
..+|++++|.+.++++++.+|++++++.+++.+...+|+. +.+.+++.+....+|+++-..
T Consensus 212 l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999999998 667788888888999987443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-10 Score=134.06 Aligned_cols=179 Identities=15% Similarity=0.061 Sum_probs=134.1
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhH--cCCceEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEcc
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLP 748 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~-------~~~~~~~~~~~~~~~gi~~~rv~~~~ 748 (944)
.+..++.++.++ .|....+++++..+... .|+.++ ++|.+-. .......+...+.+.|+ .++|.|.|
T Consensus 477 pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V~FlG 554 (1050)
T TIGR02468 477 PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQVAYPK 554 (1050)
T ss_pred CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeEEecC
Confidence 344456666755 89999999999998653 345554 3443211 11234678888899999 59999999
Q ss_pred CccCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccc--cCCHH
Q 002273 749 LILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLI--AKNED 819 (944)
Q Consensus 749 ~~~~~~~~~~~~~~~----Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v--~~~~~ 819 (944)
..+ ..+....|+.+ |||+-|.-+ +.|.|.+|||+||+|||+ +++|+. ++. -|...++ ..|++
T Consensus 555 ~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-------SdvGG~~EII~-~g~nGlLVdP~D~e 625 (1050)
T TIGR02468 555 HHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-------TKNGGPVDIHR-VLDNGLLVDPHDQQ 625 (1050)
T ss_pred CCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-------eCCCCcHHHhc-cCCcEEEECCCCHH
Confidence 876 56777788777 699887766 889999999999999999 777721 111 1223333 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 820 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 820 ~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
++.+...++.+|++.++++++..+++.. .|++...++.+.+.|..+-.|.
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988863 3999999999999998775443
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=121.33 Aligned_cols=153 Identities=10% Similarity=0.111 Sum_probs=116.7
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecC
Q 002273 690 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 769 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~ 769 (944)
...|....+++++.++.. +.+|+++|.+.........+.+ ..++ .++|.|.|.++ ..+....+..+|+++-|
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~---~~~~-~~~V~~~g~~~-~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKE---KAAA-DPRIIFVGPIY-DQELLELLRYAALFYLH 274 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHH---HhCC-CCcEEEccccC-hHHHHHHHHhCCEEEeC
Confidence 457888889988887643 7899999875332233333322 4566 58999999987 57888899999999766
Q ss_pred CC--CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc------cccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002273 770 FP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH------LIAKNEDEYVQLALQLASDVTALANLRMS 841 (944)
Q Consensus 770 ~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~------~v~~~~~~y~~~a~~l~~d~~~~~~~r~~ 841 (944)
.. .+.|.+.+|||++|+|||| ++++ |++| ++..+.+.+.+...+|.+|++.+.++++.
T Consensus 275 s~~~e~~~~~~~EAma~G~PvI~-------s~~~-------~~~e~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 340 (363)
T cd04955 275 GHSVGGTNPSLLEAMAYGCPVLA-------SDNP-------FNREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKA 340 (363)
T ss_pred CccCCCCChHHHHHHHcCCCEEE-------ecCC-------ccceeecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHH
Confidence 64 4678899999999999999 6665 4444 33344444899999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 842 LRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
.++...+ .|+++.++.++++.|+
T Consensus 341 ~~~~~~~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 341 ARERIRE--KYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHH--hCCHHHHHHHHHHHhC
Confidence 8887654 4999999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-10 Score=126.30 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=122.5
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 684 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 684 ~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
+++.+. ...|..+.+++++.++....|+.+|.+.|.+ .....+....+..|+ .++|.|.|.. .+....|+
T Consensus 206 ~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~ 277 (372)
T cd04949 206 KIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGL-EDYVFLKGYT---RDLDEVYQ 277 (372)
T ss_pred eEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCC-cceEEEcCCC---CCHHHHHh
Confidence 344444 4689999999999999999999999999876 234556666788898 5899999853 46778889
Q ss_pred cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHH
Q 002273 762 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 762 ~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~--~~~~y~~~a~~l~~d~~~~~ 836 (944)
.+|++++|..+ +.|.+.+|||++|+|||+ ++++ ..-+-.-|-..++.. |.+++.+....+.+|++.++
T Consensus 278 ~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~-------~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 278 KAQLSLLTSQSEGFGLSLMEALSHGLPVIS-------YDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred hhhEEEecccccccChHHHHHHhCCCCEEE-------ecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHH
Confidence 99999999977 779999999999999999 4432 111222255556655 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFAL 859 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~ 859 (944)
.+++..++.. .-|+++.++.
T Consensus 351 ~~~~~a~~~~---~~~s~~~~~~ 370 (372)
T cd04949 351 KFSEAAYENA---ERYSEENVWE 370 (372)
T ss_pred HHHHHHHHHH---HHhhHHHHHh
Confidence 9999888763 2366666554
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=127.39 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=120.6
Q ss_pred eEEEecCC--CCcCCHHHH----HHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 683 ITFGSFNN--LAKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
.+++.+++ ..|..+.++ ++|..|.+..|+.+|+++|.+. . .. +++++. .++|.|+|.++ +.
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~-~~----~~~l~~-~~~V~~~G~v~---~~ 291 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----S-PA----VRALAA-LPGVTVTGSVA---DV 291 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----h-HH----HHHhcc-CCCeEEeeecC---CH
Confidence 34444454 466666555 6788888889999999998652 1 11 233444 46899999875 45
Q ss_pred HHhcccccEEecCCCC--CCcccHHHhhhcCCcEEecCCCcccccchhHHHh-hcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~--~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
...|..+||++-|+.+ +.+++.+|||+||+|||+- +++..-+. .-|..-+|+.|.+++++...+|.+|++
T Consensus 292 ~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t-------~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 292 RPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVAS-------PEAAEGIDALPGAELLVAADPADFAAAILALLANPA 364 (397)
T ss_pred HHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEec-------CcccccccccCCcceEeCCCHHHHHHHHHHHHcCHH
Confidence 6778899999988754 4466899999999999994 33221121 123334567899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+++++++.|+.+.+. |+++..++.+|+.|++
T Consensus 365 ~~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 365 EREELGQAARRRVLQH--YHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhcC
Confidence 9999999999887544 9999999999998853
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=129.38 Aligned_cols=263 Identities=18% Similarity=0.145 Sum_probs=163.8
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC--CcceeeecccCCCCC-----CCCCccEEEecCCCCCcccc---cc
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QK 648 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~G~p~t~-----g~~~~Dy~i~d~~~~p~~~~---~~ 648 (944)
..+.+.++..++||++--+.++. -+..++.+ -.|+-.++.|+.... .+...|.+++-.-....... ..
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 45777889999999976443322 12222222 356655565554322 12345666542111001111 11
Q ss_pred cccceEEcCCCcc--ccCCCCCCCC----CCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCC
Q 002273 649 HVEELIRLPECFL--CYTPSPEAGP----VCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKP 720 (944)
Q Consensus 649 ~~e~~~~lp~~~~--~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 720 (944)
..+++..+|+..- .|.+...... .+.....+++.++++..++ ..|..+.+++++..+....|+.+|+++|.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred ChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 2367777776321 0111100000 0011123456666766665 489999999999999888889999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC--CCCCcccHHHhhhcCCcEEecCCCcccc
Q 002273 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF--PYAGTTTTCESLYMGVPCVTMAGSVHAH 798 (944)
Q Consensus 721 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~--~~~~~~t~~eal~~gvPvvt~~g~~~~~ 798 (944)
...+...+.+.+.+.+.|+ .++|.|.|. ..+....+..+|+++-|. +.+.|+|.+|||++|+|||+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e 301 (355)
T cd03819 226 QGRRFYYAELLELIKRLGL-QDRVTFVGH---CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARE 301 (355)
T ss_pred cccchHHHHHHHHHHHcCC-cceEEEcCC---cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH
Confidence 5555566777778888898 589999998 357788889999999887 3477999999999999999843221111
Q ss_pred cchhHHHhhcCCcccc--cCCHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002273 799 NVGVSLLTKVGLKHLI--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMSKSPVCDGQ 855 (944)
Q Consensus 799 r~~~~~l~~~gl~~~v--~~~~~~y~~~a~-~l~~d~~~~~~~r~~~~~~~~~~~~~~~~ 855 (944)
++.. |...++ ..|++++++... .+..|++.+.++++..++.+... |+.+
T Consensus 302 -----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~--f~~~ 353 (355)
T cd03819 302 -----TVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETL--FSYD 353 (355)
T ss_pred -----HHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh--hhhc
Confidence 1222 222333 368888888774 45558999999999998877533 5543
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-10 Score=124.86 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=125.6
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
++.++|+.+++ ..|..+.+++++.++... |+.+|++.|.+. ....++ +. .++|.|.|.++ ..+..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~----~~~~~~------~~-~~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGP----ARARLE------AR-YPNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCCc----hHHHHh------cc-CCcEEEEeccC-HHHHH
Confidence 34455665554 478889999999999888 999999998652 222222 33 57899999866 67888
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~ 834 (944)
..|..+|++|-|... +.|+|.+|||++|+|||+.....+...+ .. +-..++ ..|.+++++....+..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i-----~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV-----TD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh-----cC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 999999999988855 7799999999999999996644433222 22 122333 35677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+.++....++.. .-|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999888875 34899999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=118.89 Aligned_cols=312 Identities=12% Similarity=0.015 Sum_probs=171.8
Q ss_pred EEEeecCCC------ccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC------CCHH
Q 002273 512 VIGYVSPDY------FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 579 (944)
Q Consensus 512 riGy~S~d~------~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~------~~~~ 579 (944)
+|.++++.+ ....+..++..+...+.+.+.||++++......... ...... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--LVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--eeeccC--CCcccccchhhHhhHHHHH
Confidence 577777765 233334555667676767788999987654321111 111000 011111000 0124
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCC------CCccEEEecCCCCCcccccccccce
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEEL 653 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~------~~~Dy~i~d~~~~p~~~~~~~~e~~ 653 (944)
.+.+.|...++||+.--+.... ......+-.|+-++..|.+..... ...|.+++-.-........ . .++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~-~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLP---LPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPP-L-PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccc---hhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhccc-c-ccc
Confidence 5677888899999964322222 113334556777776665543211 2223333211100000001 1 455
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHH
Q 002273 654 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 733 (944)
Q Consensus 654 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 733 (944)
..+|+.. ++..-.+ .+ .....++|..--...|..+.++++..+ ++.+|++.|.+.. ...+...
T Consensus 153 ~vi~ngv---d~~~~~~----~~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~----~~~~~~~ 215 (335)
T cd03802 153 ATVHNGI---DLDDYPF----RG-PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD----PDYFYRE 215 (335)
T ss_pred EEecCCc---ChhhCCC----CC-CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC----HHHHHHH
Confidence 5666431 1111000 01 111223332222568888777776432 5789999887632 2223333
Q ss_pred HHHcC-CCCCcEEEccCccCcHHHHHhcccccEEecCCC--CCCcccHHHhhhcCCcEEecCCCcccccchhH-HHhhcC
Q 002273 734 LEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVG 809 (944)
Q Consensus 734 ~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~-~l~~~g 809 (944)
..+.. + .++|.|.|.++ ..+....+..+|+++-|.. .+.|.+.+|||+||+|||+ +++|+. -+-.-|
T Consensus 216 ~~~~~~~-~~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~-------~~~~~~~e~i~~~ 286 (335)
T cd03802 216 IAPELLD-GPDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIA-------FRRGAVPEVVEDG 286 (335)
T ss_pred HHHhccc-CCcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEE-------eCCCCchhheeCC
Confidence 33332 4 48999999987 5678889999999998874 5779999999999999999 555410 011113
Q ss_pred CcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 810 LKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 810 l~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
...++..+.+++++....+..+.. +..++... ..|+++.++.++++.|+
T Consensus 287 ~~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 287 VTGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred CcEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 344566678888888887765442 23333332 44999999999999884
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=123.55 Aligned_cols=175 Identities=16% Similarity=0.125 Sum_probs=132.2
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
...+.++|+.+++. .|..+.+++++.++....|+.+|+++|++... ......+....+..|+ .++|.|.|.++ .
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~-~ 293 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPGRVS-R 293 (398)
T ss_pred cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEeccCC-H
Confidence 34455667777755 77889999999999988999999999865432 1223446667778888 48999999987 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhc
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 830 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~ 830 (944)
.+....+..+|++|-|.-+ +.|.+.+|||++|+|||+-...... .++.. +-..++. .|++++++....+.+
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~-----e~i~~-~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPR-----DIVVD-GVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHH-----HHccC-CCCeEEeCCCCHHHHHHHHHHHHh
Confidence 7889999999999987754 6689999999999999984322111 12222 1123333 489999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
|++.+..++...++...+. |+++.++..++
T Consensus 368 ~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARAR--YTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHh
Confidence 9999999999988876434 89998888765
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=129.55 Aligned_cols=164 Identities=7% Similarity=0.013 Sum_probs=127.6
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 684 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 684 ~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
++..++ ...|..+.+++++..+.+..|+.+|.++|.+ ..++.+++.+++.|+ .++|.|.|.. +....|+
T Consensus 321 ~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l-~~~V~f~G~~----~~~~~~~ 391 (500)
T TIGR02918 321 SIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQA-QDYIHLKGHR----NLSEVYK 391 (500)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCC-CCeEEEcCCC----CHHHHHH
Confidence 344444 4589999999999999999999999999876 456788888899999 5899999975 3445678
Q ss_pred cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC------C----HHHHHHHHHHH
Q 002273 762 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK------N----EDEYVQLALQL 828 (944)
Q Consensus 762 ~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~------~----~~~y~~~a~~l 828 (944)
.+|+++-|.-+ +.|.|++|||++|+|||+ ++++ ..=+-.-|...++.. | .+++.++.++|
T Consensus 392 ~adv~v~pS~~Egfgl~~lEAma~G~PVI~-------~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 392 DYELYLSASTSEGFGLTLMEAVGSGLGMIG-------FDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred hCCEEEEcCccccccHHHHHHHHhCCCEEE-------ecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 89999888755 789999999999999999 5553 211222266666654 2 77888888888
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+ ++.+.++++..++.. .-|+++..+..++++++.
T Consensus 465 l~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 465 FN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred hC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 85 557889999888753 349999999999988865
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=102.81 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=100.6
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
+..-+.++..|..++..|++++|...|+-+...+|.+...|+.+|.|+..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
+++..|+.+.|++.|+.++......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999887443
|
|
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=129.08 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=125.2
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceE--EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRL--VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l--~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
++.++|+++++ ..|..+.+++++.++....|+..+ .++|++ .....+++.++..+. .++|.|+|.++ ..+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~-~~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPE-NISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCC-CceEEEecCCC-hHH
Confidence 44556666665 478899999999999998886544 455654 455677777777777 58999999987 577
Q ss_pred HHHhccc--ccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcc-ccc--CCHHHHHHHHHH
Q 002273 756 HMQAYSL--MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKH-LIA--KNEDEYVQLALQ 827 (944)
Q Consensus 756 ~~~~~~~--~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~-~v~--~~~~~y~~~a~~ 827 (944)
....|.. +|+++-|..+ +.+.+.+|||++|+|||+ +++|+. ++.. |-.. ++. .|++++++...+
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~~-~~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVDN-GGNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhcC-CCcEEEeCCCCCHHHHHHHHHH
Confidence 7777754 7898777755 779999999999999999 667611 1111 2112 232 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
+.+|++.+.+++++.|+.+... |+.+...+.+
T Consensus 374 ll~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 374 FIDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 9999999999999999988644 8888776654
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=129.81 Aligned_cols=260 Identities=11% Similarity=-0.006 Sum_probs=157.6
Q ss_pred CHHHHHHHhHhCCccEEEecC-CCCCCCchh-hhccCCcceeeec----ccCCCCCCCCCccE--------EE----ecC
Q 002273 577 DEKKVAAMVREDKIDILVELT-GHTANNKLG-MMACQPAPVQVTW----IGYPNTTGLPTIDY--------RI----TDS 638 (944)
Q Consensus 577 ~~~~~a~~i~~d~idilvdl~-g~t~~~~~~-~~a~r~ApvQ~~~----~G~p~t~g~~~~Dy--------~i----~d~ 638 (944)
+..++.+.|.+.++||++=-+ +|-.....+ ..|.|.-||-.++ ..|....|+..+-- ++ +|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 457799999999999986221 222211111 2344555654443 22222222222111 11 455
Q ss_pred CCCCcccccccccceEEcCCCcc---ccCCCCCCCCCCCCCCC---CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCc
Q 002273 639 LADPPETKQKHVEELIRLPECFL---CYTPSPEAGPVCPTPAL---TNGFITFGSFNNLAKITPKVLQVWARILCAVPNS 712 (944)
Q Consensus 639 ~~~p~~~~~~~~e~~~~lp~~~~---~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~ 712 (944)
++.|.+....+...++...+ ++ .|.|....... ...++ +.+ +.|..==...|....++++|..+....|+.
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L~~~~pnv 578 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKHKNELDGF 578 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCc-eEEEEcccccCCHHHHHHHHHHHHhhCCCe
Confidence 66665544433333333222 22 13333221111 11122 223 334332245999999999999999989999
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEec
Q 002273 713 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~ 791 (944)
+|+|+|.| +.++.+++.+.++|+ +|.|+|.... ....|+.+|||+-|..+ +.|++++|||+||+|||+-
T Consensus 579 rLvIVGDG----P~reeLe~la~eLgL---~V~FLG~~dd---~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVAT 648 (794)
T PLN02501 579 NLDVFGNG----EDAHEVQRAAKRLDL---NLNFLKGRDH---ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCA 648 (794)
T ss_pred EEEEEcCC----ccHHHHHHHHHHcCC---EEEecCCCCC---HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEe
Confidence 99999877 567788888888888 3899988542 22567889999888766 7799999999999999983
Q ss_pred CCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 792 AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 792 ~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
+++..-.-.-|-..++..|.+++++.+.++..|++.+...++ + .-++++.++..|++.
T Consensus 649 -------d~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a----~----~~~SWeAaadrLle~ 706 (794)
T PLN02501 649 -------DHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQ----R----YNLSWEAATQRFMEY 706 (794)
T ss_pred -------cCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHH----H----hhCCHHHHHHHHHHh
Confidence 333111000133345668999999999999998864322221 1 247888888877764
|
|
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=122.12 Aligned_cols=168 Identities=18% Similarity=0.122 Sum_probs=123.9
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.++++.+++ ..|..+.+++++..+....|+.+|.+.|.+... .......+++.+. .++|.|.|.++ ..+...
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~ 268 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL---NEELLARLRELGL-GDRVRFLGYVS-DEELAA 268 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc---cHHHHHHHHHcCC-CCeEEECCCCC-hhHHHH
Confidence 3444555554 478899999999999999888999998764322 1222233356777 68999999987 578999
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
.+..+|++|-|.-+ +.|.+.+|||++|+|||+-....+..-++ ..|+ -+...|.+++++....+.+|++.+..
T Consensus 269 ~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 269 LYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALREE 342 (365)
T ss_pred HHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988755 67899999999999999943322222111 1010 12356899999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 838 LRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 838 ~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
+++..++.+ ..|+++.+++.+.
T Consensus 343 ~~~~~~~~~---~~~sw~~~~~~~~ 364 (365)
T cd03809 343 LRERGLARA---KRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHH---HhCCHHHHHHHHh
Confidence 999888543 3389999888764
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-10 Score=131.35 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=131.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCC-----C-H--HHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----C-D--SVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~-~--~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
+..++++.+|+ .|..+.+++++.++....+++.|+|+|++.. + + ...+++.+.+.+.|+ .++|.|+|..
T Consensus 549 ~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~g~V~flG~~ 627 (784)
T TIGR02470 549 NKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-HGQIRWIGAQ 627 (784)
T ss_pred CCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-CCeEEEccCc
Confidence 44457777765 7999999999988765557899999986532 1 1 244678888999999 5999999975
Q ss_pred cCcH---HHHHhc-ccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------c
Q 002273 751 LLNH---DHMQAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------A 815 (944)
Q Consensus 751 ~~~~---~~~~~~-~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------~ 815 (944)
.... ++...+ +.+|||+-|.-| +.|.|.+|||+||+|||+ +++| |++|.| .
T Consensus 628 ~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~G-------G~~EiV~dg~tGfLVdp 693 (784)
T TIGR02470 628 LNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFG-------GPLEIIQDGVSGFHIDP 693 (784)
T ss_pred CCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCC-------CHHHHhcCCCcEEEeCC
Confidence 3222 333332 346899877765 889999999999999999 8888 555544 3
Q ss_pred CCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHH
Q 002273 816 KNEDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWH 870 (944)
Q Consensus 816 ~~~~~y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~ 870 (944)
.|++++.+...++. +|++.+.++++..++++... |+++.+++.+.+... ..|.
T Consensus 694 ~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~--FSW~~~A~~ll~l~~~~~~~~ 752 (784)
T TIGR02470 694 YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEK--YTWKIYSERLLTLAGIYGFWK 752 (784)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhHhh
Confidence 47888888877654 79999999999998887544 999999999998875 4674
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-10 Score=130.60 Aligned_cols=180 Identities=14% Similarity=0.055 Sum_probs=131.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCC-----CHH---HHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CDS---VRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
..++++++|+ .|..+.+++++.++.+..|+++|+++|++.. ... ...++.+.+.+.|+ .++|.|+|...
T Consensus 573 kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~~~V~flG~~~ 651 (815)
T PLN00142 573 KPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-KGQFRWIAAQT 651 (815)
T ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-CCcEEEcCCcC
Confidence 3457777766 7889999999999877778999999986521 111 23567788899999 59999998643
Q ss_pred C---cHHHHHhcc-cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhh--cCCcccc--cCCHHHHH
Q 002273 752 L---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VGLKHLI--AKNEDEYV 822 (944)
Q Consensus 752 ~---~~~~~~~~~-~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~--~gl~~~v--~~~~~~y~ 822 (944)
+ ..+....+. .+|||+-|.-| +.|.|.+|||+||+|||+ +++|+ +-.. -|...++ ..|.+++.
T Consensus 652 ~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-------TdvGG-~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 652 NRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCQGG-PAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred CcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHHHH
Confidence 2 245555454 57999887766 789999999999999999 77772 1111 1333333 34788887
Q ss_pred HHHHH----HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHHHHh
Q 002273 823 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWHRYC 873 (944)
Q Consensus 823 ~~a~~----l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~ 873 (944)
+.... +.+|++.+.++++..++++.+ .|+++.++..+++.-. ..| +|.
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e--~FSWe~~A~rll~L~~~~~~~-~~~ 777 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYE--CYTWKIYAERLLTLGGVYGFW-KYV 777 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcchh-hhc
Confidence 77654 458999999999999888754 4999999999999764 356 344
|
|
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.2e-10 Score=114.40 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=150.1
Q ss_pred CCccEEEecCCCCCccc---ccccccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHH
Q 002273 629 PTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQV 701 (944)
Q Consensus 629 ~~~Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~ 701 (944)
..+|-.|.=.+..-+.+ ...-.+++..+|+.-. .|.|.+.. ..+++.++.-..+|+ .|..+-.+.+
T Consensus 144 ~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426)
T KOG1111|consen 144 ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLEI 216 (426)
T ss_pred cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-------cCCCCeeEEEEEeeeeeccchHHHHHH
Confidence 44555553333333332 2334478888887432 24442211 123343566666676 8999999999
Q ss_pred HHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC-CCCCcccHHH
Q 002273 702 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCE 780 (944)
Q Consensus 702 ~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~~~~~t~~e 780 (944)
-.+|-+..|+.++++.|+| +-+..+++.++++-+ .+||.|+|.++ +++.-..|..-||||.|. ....|++.+|
T Consensus 217 Ip~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l-~~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivE 290 (426)
T KOG1111|consen 217 IPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFL-QDRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVE 290 (426)
T ss_pred HHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhc-cCceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHH
Confidence 9999999999999999877 667778888888888 69999999998 789999999999999999 4588999999
Q ss_pred hhhcCCcEEecCCCcccccchhHHHhhcCCcccccCC--------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 002273 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 852 (944)
Q Consensus 781 al~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~--------~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~ 852 (944)
|+.||+|||+ +||| |+||.+..| +++.++....-.+.. ...-....+++ ...+
T Consensus 291 AaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~---~~~p~~~h~~v--~~~y 351 (426)
T KOG1111|consen 291 AASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKL---RTLPLEFHDRV--KKMY 351 (426)
T ss_pred HHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHh---ccCchhHHHHH--HHhc
Confidence 9999999999 9999 999977554 555554444333221 11122234454 4569
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002273 853 DGQNFALGLESTYRNMW 869 (944)
Q Consensus 853 ~~~~~~~~~e~~~~~~~ 869 (944)
+|+..++.-|+.|.++-
T Consensus 352 ~w~dVa~rTekvy~r~~ 368 (426)
T KOG1111|consen 352 SWKDVAERTEKVYDRAA 368 (426)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999997653
|
|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-10 Score=133.14 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCC-CCcEEEccCcc
Q 002273 676 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 751 (944)
Q Consensus 676 ~~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~-~~rv~~~~~~~ 751 (944)
.+++ .+.++++++.|+ .|..+.+++++.+++. ++.+|+|+|.+- +......|++.+.++|+. ++||.|.+...
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 3455 366789999977 7999999999999986 579999988652 335677888888888885 58999987643
Q ss_pred CcHHHH--HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC------------
Q 002273 752 LNHDHM--QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------------ 816 (944)
Q Consensus 752 ~~~~~~--~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~------------ 816 (944)
+.+ ..|..+||||-|+-| +.|.|.+|||.+|+|+|+ +++| |++|.|.+
T Consensus 910 ---e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g 972 (1036)
T PLN02316 910 ---EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQG 972 (1036)
T ss_pred ---HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhccccccccccccccc
Confidence 332 588999999988866 889999999999998887 7777 77776633
Q ss_pred -----------CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 817 -----------NEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 817 -----------~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
|++++.....++..+ ++.+..+++..+..|. .-|++.+.++.++++|+.+
T Consensus 973 ~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~--~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 973 LEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVME--QDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred cCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHH
Confidence 577777777776665 3445556777777775 4499999999999999875
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-09 Score=102.54 Aligned_cols=361 Identities=16% Similarity=0.071 Sum_probs=236.7
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.+...+-.+|.+|+...+|..|..+|++.-...|+.....+..+..+++.+.+..|+.........+.-.......-+.+
T Consensus 42 ~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 42 RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAI 121 (459)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999999999999999999999998877654322223455556777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
.+..+++..+....++. |...+ +....+.|.+.++.|++++|++-|+.+++...-++-.-++++.++++.+
T Consensus 122 kYse~Dl~g~rsLveQl----p~en~-----Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~ 192 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQL----PSENE-----ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR 192 (459)
T ss_pred hcccccCcchHHHHHhc----cCCCc-----cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh
Confidence 78888888887776654 32111 3357888999999999999999999999999989999999999999999
Q ss_pred CHHHHHHHHHHHHHh----CCC-------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 206 QYDTALGCYEKAALE----RPM-------------------------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 206 ~~~~A~~~~~~al~~----~p~-------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
+++.|+++..++++. .|. -.+++...+.++++.++++.|.+.+..+--...
T Consensus 193 qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 193 QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 999999998888763 232 124667778889999999998876544321111
Q ss_pred --CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc-h---hHHHhhhcCCHHHHHHHHHHHHHhCCCC-----HHH
Q 002273 257 --NFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS-P---FFELVKLEGDINQGVAYYKKALYYNWHY-----ADA 325 (944)
Q Consensus 257 --~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~l~~~~~~~~~A~~~~~~al~~~p~~-----~~~ 325 (944)
-++....+++..-.... .......+.+.....+++. . +.-++.+..-++-|...+ ..+|+. ...
T Consensus 273 ~elDPvTLHN~Al~n~~~~-p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Y 347 (459)
T KOG4340|consen 273 EELDPVTLHNQALMNMDAR-PTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPY 347 (459)
T ss_pred ccCCchhhhHHHHhcccCC-ccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHH
Confidence 13445555554433221 1111122222222222333 2 334555665666665544 333432 122
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH--CC---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 326 MYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLG-VIYKD--RD---NLDKAVECYQMALSIKPNFSQSLNNLG 398 (944)
Q Consensus 326 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~g---~~~~A~~~~~~al~~~p~~~~~~~~la 398 (944)
.+.+-..+.. .-..++|.+-+...-..- ..-+..++ .+... .+ ...+|++.|++++++. ..+....+
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~A 421 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQA 421 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3333333332 335566665555443221 11111111 11111 11 2345566666666652 45677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAE 426 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~ 426 (944)
++|....+|..+.+.|++..+.-.++..
T Consensus 422 kiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 422 KIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HhhccccccHHHHHHHHHHHhhhcccce
Confidence 9999999999999999999887655433
|
|
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=125.12 Aligned_cols=201 Identities=12% Similarity=0.009 Sum_probs=135.0
Q ss_pred ecCCCCCcccccccccceEEcCCCccc---cCCCCCCCCCCCCCCCCCCC--eEEEecCCC--CcCCHHHHHHHHHHHhH
Q 002273 636 TDSLADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNGF--ITFGSFNNL--AKITPKVLQVWARILCA 708 (944)
Q Consensus 636 ~d~~~~p~~~~~~~~e~~~~lp~~~~~---~~~~~~~~~~~~~~~~~~~~--~~f~~~~~~--~K~~~~~~~~~~~il~~ 708 (944)
+|.++.|......+.+..+..+ .++. |.|.... ....+. +++. .++...+|+ .|..+.+++++.+|.+.
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v-~GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~ 256 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNV-HGVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE 256 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecC-ceechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh
Confidence 5666666555444555555544 2332 3332211 111111 2332 235556665 89999999999999998
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 787 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP 787 (944)
.|+.+|+|+|.| +.++.|++.+.++|++ .++ |.|... .. ..|..+|||+-|+.+ +.|+|++|||+||+|
T Consensus 257 ~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~P 326 (462)
T PLN02846 257 LSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-AD---PLFHDYKVFLNPSTTDVVCTTTAEALAMGKI 326 (462)
T ss_pred CCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HH---HHHHhCCEEEECCCcccchHHHHHHHHcCCc
Confidence 999999999987 6788899999999984 555 777643 33 455667999888866 889999999999999
Q ss_pred EEecCCCcccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 788 CVTMAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 788 vvt~~g~~~~~r~~~-~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
||+ +++++ .++.. |-..+...|.+++++....+..++. ..++...++ .|+++..+++|++.|+
T Consensus 327 VVa-------~~~~~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~~------~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 327 VVC-------ANHPSNEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQRH------ELSWEAATERFLRVAD 390 (462)
T ss_pred EEE-------ecCCCcceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHHH------hCCHHHHHHHHHHHhc
Confidence 999 44431 22222 4444556899999999998877542 233333222 4899999888888876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-08 Score=104.78 Aligned_cols=183 Identities=11% Similarity=0.036 Sum_probs=138.9
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (944)
..+++.++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|+++ .+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4578899999999999999999999999999999987654 48999999999999999999999999988764 67
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 119 HTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (944)
Q Consensus 119 ~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (944)
++.+|.++...+ + ..+|+..|++.++..|+...+... .. -+..+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~--------------rl~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TK--------------RLVFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HH--------------HHHHH
Confidence 888998865443 1 357889999999999987543111 11 01111
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERC 251 (944)
Q Consensus 181 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (944)
+..+ ..--+..|..|.+.|.|..|+.-++.+++..|+ ..+++..++..|..+|..++|.+.....
T Consensus 171 ~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 171 KDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1111 223346677788888888888888888887765 3567778888888888888887765543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-08 Score=107.42 Aligned_cols=157 Identities=23% Similarity=0.223 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...|+.++|.+.+++++..+|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 378889999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..++|..+.+.|++.+|+..+++.+..+|+++..|..|+..|..+|+-.+|.. ..+..|..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHh
Confidence 67778888889999999999999999999999999999999999998776654 44566777
Q ss_pred cCCHHHHHHHHHHHHHhCCCc
Q 002273 238 RGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~ 258 (944)
.|++++|+..+.++.+...-+
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred CCCHHHHHHHHHHHHHhccCC
Confidence 899999999999998876443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=102.41 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (944)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998874 68999999999999999999999999999999875 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
+.+|.+++.+. ...+|+..|+..++..|+...+.... +-+..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~------------------~~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK------------------KRLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH------------------HHHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH------------------HHHHHHHHHH----
Confidence 88888876543 34589999999999999976542110 0111111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 245 (944)
..--+.+|..|.+.|.|..|+..++.+++..|+.. +++..++..|..+|..+.|.
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22334567777777778888877877777777653 46677777777777776443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-08 Score=106.62 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCC
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 476 (944)
+|.+.|++.+|+..++..+..+|+++..|..|++.|..+|+..+|...+.+.+.+.-+...+..-...+......+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999988888877766655444444443443
|
|
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=108.92 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
..++.++++.+++. .|....+++++..+... .|+..|++.|.+ .....+.......++ .++|.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNL-KENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTC-GTTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----ccccccccccccccc-ccccccccccc-cc
Confidence 34566777777754 78999999999998875 899999999843 355667788888898 58999999987 78
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 831 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d 831 (944)
+....|+.+||++-|..+ ++|++.+|||++|+|||+-....+.. ++ .-+...++. .|.++.++...++..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e-----~~-~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNE-----II-NDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHH-----HS-GTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCce-----ee-ccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999877 88999999999999999933222211 11 113334443 4679999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDL 845 (944)
Q Consensus 832 ~~~~~~~r~~~~~~ 845 (944)
++.++.|++..|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988875
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-09 Score=121.23 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=120.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-ccCccCcHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~ 757 (944)
+.++++.+.|+ .|..+.+++++.+++.. +.+|+++|.+ .......+++..+++| +++.| .+. . .....
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~-~~~~~ 351 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D-EALAH 351 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-HHHHH
Confidence 56678888865 79999999999998864 7899998765 2345677777777775 45654 444 2 23344
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDE 820 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------------~~~~~~ 820 (944)
..|+.+|++|-|+.| +.|.|.+|||++|+|||+ +++| |++|.| ..|+++
T Consensus 352 ~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv~~~d~~~ 417 (466)
T PRK00654 352 RIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVFDDFNAED 417 (466)
T ss_pred HHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEeCCCCHHH
Confidence 678999999988877 779999999999999998 6666 555433 247788
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 821 YVQLALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 821 y~~~a~~l~~---d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
+.+...++.. |++.+.+++.+. +. ..|+++.+++.++++|+++..
T Consensus 418 la~~i~~~l~~~~~~~~~~~~~~~~---~~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 418 LLRALRRALELYRQPPLWRALQRQA---MA--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---hc--cCCChHHHHHHHHHHHHHHhh
Confidence 8877776655 666655555433 22 459999999999999998754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=116.58 Aligned_cols=108 Identities=20% Similarity=0.133 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..+...|..++..|+|++|+.+|+++++.+|++..+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
+|++++|+..|+++++++|++......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999998764433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-09 Score=116.23 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
..|..++..|++++|+.+|+++++++|+++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
++|+..|+++++++|++..+...++.+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555555555544443
|
|
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-09 Score=120.84 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=123.0
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++|+++.|+ .|..+.+++++.+++. ++.+|+++|.+ ....++.+++..+++ ++||.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 356678888866 7999999999999886 48999999865 234567777777776 47999998865 45667
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc------------cc--cCCHHHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH------------LI--AKNEDEYV 822 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~------------~v--~~~~~~y~ 822 (944)
..|+.+|++|-|+-+ +.|.+.+|||.+|+|+|+ +++| |+.| ++ ..|++++.
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv-------~~~G-------Gl~d~v~~~~~~~~~G~l~~~~d~~~la 442 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVA-------YAGG-------GIVETIEEVSEDKGSGFIFHDYTPEALV 442 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEE-------ecCC-------CCceeeecCCCCCCceeEeCCCCHHHHH
Confidence 789999999988866 779999999999988777 4555 4433 33 24677777
Q ss_pred HHHHH---HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 823 QLALQ---LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 823 ~~a~~---l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
+...+ +.+|++.+++++.+ .+. ..|+++..+++++++|+++.
T Consensus 443 ~ai~~~l~~~~~~~~~~~~~~~---~~~--~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 443 AKLGEALALYHDEERWEELVLE---AME--RDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHHHHHcCHHHHHHHHHH---Hhc--CCCChHHHHHHHHHHHHHHh
Confidence 66544 55788776666542 332 46999999999999999875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-08 Score=100.98 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
..+..++..|..++..|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467888999999999999999999999999999988654 4899999999999999999999999999998775
Q ss_pred HHHHHHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (944)
Q Consensus 157 a~~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (944)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445677776653332 1356888889999998876332 1222111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhhhhhhHHH
Q 002273 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKTYGRALL 282 (944)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~a~~ 282 (944)
...-..--+.+|..|.+.|++..|+.-++.+++..|+. .++...+..++..+|....+....
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 11112334578999999999999999999999998875 467788888999988877665543
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=114.02 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=104.0
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 682 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
.++|..--...|..+.+++++.+ .| .+|+++|.+ ...+.+++ ++ .++|.|+|.++ ..+....|.
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~-~~~V~~~g~~~-~~~~~~~~~ 260 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KA-GPNVTFLGRVS-DEELRDLYA 260 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hc-CCCEEEecCCC-HHHHHHHHH
Confidence 34444433457888888887765 45 788888865 33344433 44 58999999987 678999999
Q ss_pred cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccc-c-cCCHHHHHHHHHHHhcCHHHHHH
Q 002273 762 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHL-I-AKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 762 ~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~-v-~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
.+|+++-|...+.|.+.+|||+||+|||+. ++|+ .++.. |-..+ + ..|++++++....+.+|++ .
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~-------~~~~~~e~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~~---~ 329 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAY-------GKGGALETVID-GVTGILFEEQTVESLAAAVERFEKNED---F 329 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEe-------CCCCCcceeeC-CCCEEEeCCCCHHHHHHHHHHHHhCcc---c
Confidence 999999887778899999999999999993 3331 00111 11222 2 3688899999999999984 3
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHH
Q 002273 838 LRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 838 ~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
+++.++++. ..|+.+.|.+++
T Consensus 330 ~~~~~~~~~---~~~~~~~~~~~~ 350 (351)
T cd03804 330 DPQAIRAHA---ERFSESRFREKI 350 (351)
T ss_pred CHHHHHHHH---HhcCHHHHHHHh
Confidence 444454443 237888888765
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=97.45 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AE 226 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 226 (944)
.++.+++..+....++.+++.+-+..+.+... -......++..+..++.++++++.|+++++...++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34667777777778888888888777766322 23567778999999999999999999998864432 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHH
Q 002273 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306 (944)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 306 (944)
++..+|.++....++++|+-+..++.++..... .+++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~------------------------------------------l~d~~ 201 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG------------------------------------------LKDWS 201 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC------------------------------------------cCchh
Confidence 778899999999999999998888877643211 00000
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002273 307 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECY 380 (944)
Q Consensus 307 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~ 380 (944)
. .| ...+++.++..+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|
T Consensus 202 ~---ky---------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 202 L---KY---------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred H---HH---------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 0 00 02345667777777777777777777776652 223455666788888888888888888
Q ss_pred HHHHhhCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 002273 381 QMALSIKPN------FSQSLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 381 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~l~~al~~~p~~------~~a~~~la~~~~~~g~~~e 443 (944)
++|...... ..+++...+.++....-..+ |++.-++++++.... ...+..++.+|..+|.-++
T Consensus 270 e~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 270 EQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 877755321 23455555666554443333 777777777764332 4567788999988888877
Q ss_pred HHHHHHHHHhh
Q 002273 444 AIDAYEQCLKI 454 (944)
Q Consensus 444 A~~~~~~al~l 454 (944)
=...+.++-+.
T Consensus 350 ~~~h~~ra~~~ 360 (518)
T KOG1941|consen 350 LRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHH
Confidence 77777665443
|
|
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-09 Score=117.56 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=116.6
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhH------cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
++..++++..+ ..|..+.+++++..+.+. .|+.+|+++|.+ ..++.+++.+++.|++ +.+.|.|.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~~ 304 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWLS 304 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcCC
Confidence 44455666564 478889999999988753 488999999876 4578888899999994 5555556666
Q ss_pred CcHHHHHhcccccEEecCCC----CCCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccCCHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAKNEDEYVQLA 825 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~----~~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~~~~~y~~~a 825 (944)
.++....|..+||++-+.+ ++.+++.+|||+||+|||+ ++++ .-++.. |-..++..|.+++.+..
T Consensus 305 -~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~-------s~~~~~~eiv~~-~~~G~lv~d~~~la~~i 375 (415)
T cd03816 305 -AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------LDFKCIDELVKH-GENGLVFGDSEELAEQL 375 (415)
T ss_pred -HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE-------eCCCCHHHHhcC-CCCEEEECCHHHHHHHH
Confidence 6888999999999984332 3458899999999999999 4443 112222 44455567999999999
Q ss_pred HHHhcC---HHHHHHHHHHHHHHh
Q 002273 826 LQLASD---VTALANLRMSLRDLM 846 (944)
Q Consensus 826 ~~l~~d---~~~~~~~r~~~~~~~ 846 (944)
..|.+| ++.+.+|++..|+..
T Consensus 376 ~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 376 IDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999 899999998887764
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=117.15 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=120.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcE-EEccCccCcHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv-~~~~~~~~~~~~~ 757 (944)
+.++|+++.|+ .|..+.++++..+++. .+.+|+++|.+ .+..++.+++..++++ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 46778888865 7999999999998876 36899998865 3346677777766653 565 67786 35666
Q ss_pred Hhc-ccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc-----------------cc--cC
Q 002273 758 QAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-----------------LI--AK 816 (944)
Q Consensus 758 ~~~-~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~-----------------~v--~~ 816 (944)
..| ..+|++|-|+-+ +.|.+.+|||++|+|+|+ +++| |++| ++ ..
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-------s~~G-------Gl~d~V~~~~~~~~~~~~~~G~l~~~~ 429 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-------ARVG-------GLADTVVDANEMAIATGVATGVQFSPV 429 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-------eCCC-------CccceeecccccccccCCCceEEeCCC
Confidence 665 579999988876 779999999999965554 3444 4433 33 24
Q ss_pred CHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 817 NEDEYVQLALQ---LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 817 ~~~~y~~~a~~---l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
|++++.+...+ +.+|++.++++++..+ ...|++++.+++++++|+++..
T Consensus 430 d~~~La~ai~~a~~l~~d~~~~~~l~~~~~-----~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 430 TADALAAALRKTAALFADPVAWRRLQRNGM-----TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred CHHHHHHHHHHHHHHhcCHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHHHh
Confidence 77888776664 7889988887777653 2459999999999999999875
|
|
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=115.44 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred EecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CcEEEccCccC
Q 002273 686 GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPLILL 752 (944)
Q Consensus 686 ~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~~~~~~~~~~gi~~------------~rv~~~~~~~~ 752 (944)
.+..+..|-...++++|.++++..|+.+|+|+|.+ ..+ ..+.+.+++.|+.. .+|.+.+.
T Consensus 237 l~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--- 309 (425)
T PRK05749 237 IAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--- 309 (425)
T ss_pred EEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec---
Confidence 33345566667789999999988999999999765 343 67888889999841 12333222
Q ss_pred cHHHHHhcccccEE-e-cCCCCCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccccCCHHHHHHHHHHH
Q 002273 753 NHDHMQAYSLMDIS-L-DTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQLALQL 828 (944)
Q Consensus 753 ~~~~~~~~~~~Di~-L-d~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~~~~~~y~~~a~~l 828 (944)
..+....|+.+||+ + -|+..+||.+.+|||++|+|||+-+.. +.++. ..+...|. -+...|.+++.+....|
T Consensus 310 ~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~---~~~~e~~~~~~~~g~-~~~~~d~~~La~~l~~l 385 (425)
T PRK05749 310 MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT---FNFKEIFERLLQAGA-AIQVEDAEDLAKAVTYL 385 (425)
T ss_pred HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc---cCHHHHHHHHHHCCC-eEEECCHHHHHHHHHHH
Confidence 35788899999995 4 244447899999999999999983211 11111 12222232 11257999999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcC
Q 002273 829 ASDVTALANLRMSLRDLMSKS 849 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~ 849 (944)
.+|++.+++++++.++.+.+.
T Consensus 386 l~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 386 LTDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred hcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999887544
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=118.91 Aligned_cols=160 Identities=16% Similarity=0.093 Sum_probs=121.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.++++++.++ .|..+.+++++.++.+. +.+|+++|.+ .+...+.+++...+.+ +++.|.+..+ ......
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTG--DPELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCC--CHHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 66778888866 89999999999998863 5899998865 2345666766666553 5788776654 455567
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDEY 821 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------------~~~~~~y 821 (944)
.|+.+|++|-|+-+ +.|.+.+|||++|+|||+ +++| |++|.| ..|++++
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------s~~g-------g~~e~v~~~~~~~~~~~G~l~~~~d~~~l 427 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-------RRTG-------GLADTVVDGDPEAESGTGFLFEEYDPGAL 427 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-------ccCC-------CccceEecCCCCCCCCceEEeCCCCHHHH
Confidence 88999999998877 779999999999999998 6666 555443 2478888
Q ss_pred HHHHHHHhc----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 822 VQLALQLAS----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 822 ~~~a~~l~~----d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+...++.. |++.+.++++... ...|+++..++.++++|++
T Consensus 428 a~~i~~~l~~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 428 LAALSRALRLYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHh
Confidence 887766666 8877777766543 2459999999999999986
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=109.88 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=109.2
Q ss_pred CCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.++++... ...|..+.++++|..+....|+.+|+++|.+.. ..++ .|+. . +.+.++ ..+...
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~----~~~l------~~~~-~---~~~~v~-~~~l~~ 205 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML----DPRL------FGLN-G---VKTPLP-DDDIYS 205 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc----chhh------cccc-c---eeccCC-HHHHHH
Confidence 334444443 368999999999999998889999999985421 1111 1331 1 223344 578889
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc-------------------------
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH------------------------- 812 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~------------------------- 812 (944)
.|+.+||++-|+-+ +.|.+.+|||++|+|||+ +++| |++|
T Consensus 206 ~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIa-------s~~g-------g~~E~i~~~~ng~lv~~~~~~~~~~~~~~ 271 (331)
T PHA01630 206 LFAGCDILFYPVRGGAFEIPVIEALALGLDVVV-------TEKG-------AWSEWVLSNLDVYWIKSGRKPKLWYTNPI 271 (331)
T ss_pred HHHhCCEEEECCccccCChHHHHHHHcCCCEEE-------eCCC-------CchhhccCCCceEEeeecccccccccCCc
Confidence 99999999888766 669999999999999999 5555 3333
Q ss_pred ----cccCCHHHHHHHHHHHhcCH--H-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 813 ----LIAKNEDEYVQLALQLASDV--T-ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 813 ----~v~~~~~~y~~~a~~l~~d~--~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
++..|.++..+.++++..|+ + .++.++...+. .. .-|+++..+..++++|++
T Consensus 272 ~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~-~~--~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 272 HVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAIL-YR--ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HH--HhCCHHHHHHHHHHHHhc
Confidence 33447788888888988873 3 44444444333 32 449999999999999974
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-07 Score=99.92 Aligned_cols=325 Identities=17% Similarity=0.172 Sum_probs=198.9
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH------------HHHHhcCCCCHHHHHHHHHHH
Q 002273 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF------------SEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~ 126 (944)
...|+.+.|.+..+-+ ++...|-+++..+.+..+.+-|.-++ +++.+ +|++ .-...+.+.
T Consensus 739 vtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHH
Confidence 3468888887766554 23467888888877777666665443 33332 3332 334456777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
.++|..++|...|++.-+ +-.+-..|...|.+++|.+..+.-=.++ .-..|++.|..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence 889999999999988754 2334456777889998888766432222 24578888999999999
Q ss_pred HHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 207 YDTALGCYEKA----------ALERPM----------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 207 ~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..+-. |+.+.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~V 945 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMV 945 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhe
Confidence 99999999885 223332 455677778888889999999999888643 23333
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
.+.+- +|+.++|-.+.++ ..+..+.+.+|..|...|++.+|+..|
T Consensus 946 rI~C~------------------------------qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 946 RIKCI------------------------------QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred eeEee------------------------------ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333 3344444443332 233445555666666666666666555
Q ss_pred HHHHhh------CCCC--------------HHHHHHHHHHHHHCC-CHHHHHHHHHHH------Hh--------------
Q 002273 347 ELAFHF------NPHC--------------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-------------- 385 (944)
Q Consensus 347 ~~al~~------~p~~--------------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-------------- 385 (944)
.++... ..++ ..-....|..|...| +...|..+|.+| ++
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 554332 1110 011112233333333 444444444322 11
Q ss_pred ---hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh----------------CCC---------CHHHHHH
Q 002273 386 ---IKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAA----------------NPT---------YAEAYNN 430 (944)
Q Consensus 386 ---~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~a------l~~----------------~p~---------~~~a~~~ 430 (944)
++| .++..+..-+..+....+|++|...+-.+ +++ .|. ...++..
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 123 35777778888888888888887765443 332 111 1357788
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 002273 431 LGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 431 la~~~~~~g~~~eA~~~~~~a 451 (944)
+|.++.++|.|..|-+-|.+|
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhh
Confidence 999999999998888877765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=92.73 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 431 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~l 431 (944)
+.++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466777777777777888888887777777665 4577778888888888888888888888777664 5677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
|.++...|++++|...++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-08 Score=97.39 Aligned_cols=175 Identities=23% Similarity=0.213 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 56789999999999999999999999999998875 5789999999999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (944)
Q Consensus 158 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (944)
.+++.+|.++... +...+|+..|+..++..|++..+- +|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554433 334577888888888877764322 22221111111 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhhh
Q 002273 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKT 276 (944)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~~~~~ 276 (944)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...++.++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 345689999999999999999999999999875 46677788888888765
|
|
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=114.06 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=124.5
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
...+.++|+.+++. .|..+.+++++.++... |+.+|++.|.+ .....+.+.....++ ++|.|.|.++ ..+
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 34556677777754 78889999999999887 99999999865 234455555555665 5799999776 688
Q ss_pred HHHhcccccEEecCCCCCC------cccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc-CCHHHHHHHHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQL 828 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~------~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~-~~~~~y~~~a~~l 828 (944)
....|..+|+++-|....+ +++.+|||++|+|||+........- +..-+..-++. .|.+++++...++
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~-----~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL-----VEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh-----hccCCcceEeCCCCHHHHHHHHHHH
Confidence 9999999999998876542 4558999999999999543322211 11112222333 4899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
..|++.+..+++..++...+ .|+++.+++.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~ 393 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEE--KFSREKLAERL 393 (394)
T ss_pred HhChHHHHHHHHHHHHHHHH--hhcHHHHHHhc
Confidence 99999999999998887653 38888887765
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=106.14 Aligned_cols=182 Identities=22% Similarity=0.254 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QN----ACAHTHCGILYKDEGRLVEAA 136 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~ 136 (944)
+|++|..+|+++ |.+|...+++++|.+.|.++....- ++ ...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 555666655554 6777888888888888888876431 11 34566667776665 999999
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~ 209 (944)
.+|++++.+.-.... ....+.++..+|.+|... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999987544333 234578899999999999 9999999999999987321 14567889999999999999
Q ss_pred HHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 210 ALGCYEKAALERPM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 210 A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
|++.|+++....-+ ....++..+.+++..|++..|...+++....+|....
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999875322 1235667888999999999999999999999886543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-05 Score=88.99 Aligned_cols=200 Identities=18% Similarity=0.099 Sum_probs=135.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
.++-..-....+++.+|++...++++..|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..++
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 34444556778999999999999999999999999999999999999999998888777777888888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH--------------
Q 002273 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN-------------- 196 (944)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------------- 196 (944)
++++|..+|++++..+|+ .+. +..+=.+|.+.+.|.+-.+.--+..+..|+++.....
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999998 443 2222233333333333222222222233332211111
Q ss_pred --------------------------------HHHHHHHcCCHHHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHHcCCHH
Q 002273 197 --------------------------------LGVVYSELMQYDTALGCYEK-AAL-ERPMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 197 --------------------------------la~~~~~~g~~~~A~~~~~~-al~-~~p~~~~~~~~la~~~~~~g~~~ 242 (944)
.-.++..+|++++|.+.+.. ..+ ..+.+...-......+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 11233456667777777632 222 23333444445566667777777
Q ss_pred HHHHHHHHHHHhCCCc
Q 002273 243 SAIACYERCLAVSPNF 258 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~ 258 (944)
+-.+...+++...+++
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777777777777776
|
|
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=107.27 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=76.0
Q ss_pred CeEEEecCC--CCcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcc---CccC
Q 002273 682 FITFGSFNN--LAKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LILL 752 (944)
Q Consensus 682 ~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~---~~~~ 752 (944)
.++|+++.+ ..|..+.++++|.++.+..|+ .+|++.|. ..+.++++ .++|.|++ .++
T Consensus 148 ~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~------------~~~~~l~l-~~~V~f~g~~G~~~- 213 (335)
T PHA01633 148 TIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH------------KQFTQLEV-PANVHFVAEFGHNS- 213 (335)
T ss_pred CeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH------------HHHHHcCC-CCcEEEEecCCCCC-
Confidence 356777775 499999999999999988886 36766642 12356777 58999985 433
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEec
Q 002273 753 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~ 791 (944)
..+....|..+|++|-|.-+ +.|.+.+|||+||+|||+-
T Consensus 214 ~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas 253 (335)
T PHA01633 214 REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQ 253 (335)
T ss_pred HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEc
Confidence 57888999999999887755 8899999999999999983
|
|
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-08 Score=110.59 Aligned_cols=262 Identities=11% Similarity=0.119 Sum_probs=147.8
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccCC--ccee--eecccCCCCCCCCCccEEEecCCCCCccccc------c
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQ--VTWIGYPNTTGLPTIDYRITDSLADPPETKQ------K 648 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~--ApvQ--~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~------~ 648 (944)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+= ++..|.+...-.+.+|.+++-. ++... .
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s----~~~~~~l~~~gi 167 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVAT----DHVKKVLVDIGV 167 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECC----HHHHHHHHHcCC
Confidence 5688899999999999432221 1111222222 2432 1112333333345677766431 11111 1
Q ss_pred cccceEEcCCCcc-ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCH
Q 002273 649 HVEELIRLPECFL-CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 724 (944)
Q Consensus 649 ~~e~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~ 724 (944)
-.|++...+.... .|.+.......+...+++. ..+++...++. .|.-..+++.+ ...|+.++++++++ +.
T Consensus 168 ~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~ 241 (380)
T PRK13609 168 PPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NE 241 (380)
T ss_pred ChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CH
Confidence 1245544432110 1211111101112234443 34333333332 34444444443 34588888877542 23
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC-CCcccccchhH
Q 002273 725 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVS 803 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~-g~~~~~r~~~~ 803 (944)
..++.+++..+..+ ++|.|+|.+. +....|..+|+++. -+||.|.+|||++|+|||+.. ... .....+.
T Consensus 242 ~~~~~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g-~~~~n~~ 311 (380)
T PRK13609 242 ALKQSLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPG-QEKENAM 311 (380)
T ss_pred HHHHHHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCC-cchHHHH
Confidence 46677777666654 6899999864 34566788999983 367889999999999999842 111 1122233
Q ss_pred HHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 804 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 804 ~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++...|+. ++..|.+++.+...+|.+|++.++++++..++.. .-++.+.+++.+++.+.
T Consensus 312 ~~~~~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 312 YFERKGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred HHHhCCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 44444553 3468999999999999999999999998887642 23588888888877664
|
|
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.7e-08 Score=108.71 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=151.7
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchh--hhc-c-----CCcceeeeccc-C---CCCCCCCCccEEEecCCCCCccc-
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLG--MMA-C-----QPAPVQVTWIG-Y---PNTTGLPTIDYRITDSLADPPET- 645 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~--~~a-~-----r~ApvQ~~~~G-~---p~t~g~~~~Dy~i~d~~~~p~~~- 645 (944)
..+.+.|++.++||+|-. |.-.++.+ ++. + ..-|+= +.+. + ....-.+.+|++++-.-..-...
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~-~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~ 166 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFT-TVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRAL 166 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEE-EEECCCCCcCcccccCCCCEEEECCHHHHHHHH
Confidence 467889999999999863 44333322 221 1 145543 2211 1 11233567888885211000000
Q ss_pred cccc-ccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHh----HcCCceEE-
Q 002273 646 KQKH-VEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILC----AVPNSRLV- 715 (944)
Q Consensus 646 ~~~~-~e~~~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~----~~p~~~l~- 715 (944)
+... .+++...+... -.|.++. .....+...+++.+..+++.+.+ ..|....+++.+..++. ..|+.+++
T Consensus 167 ~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~v 246 (382)
T PLN02605 167 KRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVV 246 (382)
T ss_pred HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEE
Confidence 1112 25565554221 1121111 11112233566666666666664 36777788888776652 13666644
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc
Q 002273 716 VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV 795 (944)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~ 795 (944)
+.|.+ +..++++. +... ..+|.|+|.+. +....|+.+|+++-+ +||.|++|||++|+|||+..--.
T Consensus 247 i~G~~---~~~~~~L~----~~~~-~~~v~~~G~~~---~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~p 312 (382)
T PLN02605 247 ICGRN---KKLQSKLE----SRDW-KIPVKVRGFVT---NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIP 312 (382)
T ss_pred EECCC---HHHHHHHH----hhcc-cCCeEEEeccc---cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCC
Confidence 44433 23344443 3332 35799999875 456667889999953 47889999999999999854111
Q ss_pred ccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 796 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 796 ~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
.....++-.+...|..- +..|+++..+...+|..| ++.+++|++..++... -.....++..+.+.
T Consensus 313 gqe~gn~~~i~~~g~g~-~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~~ 378 (382)
T PLN02605 313 GQEEGNVPYVVDNGFGA-FSESPKEIARIVAEWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHEL 378 (382)
T ss_pred ccchhhHHHHHhCCcee-ecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHHH
Confidence 11122344454456643 458999999999999998 9999999998887642 23456666655543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=90.28 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (944)
++.++..|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
+|.++...|++++|+..++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-07 Score=91.87 Aligned_cols=313 Identities=16% Similarity=0.106 Sum_probs=214.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCC--CHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE---AHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQ--NAC 117 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~ 117 (944)
.+...+..|..++...++++|+....+.+..-.+... .+-.+..+...+|.|++++...-..+.. +.. ..+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999986544332 3334556778888888877655444432 211 236
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 002273 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------A 191 (944)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 191 (944)
++.+++..+.+..++.+++.+-+..+.+-...+. ..-+.+...+|..+...+.++++++.|+++++...++ .
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 7888999999999999999988887776433221 1112345567888888899999999999999884332 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPM----------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
.++..||.+|....++++|+-+..++.++-.. ..-+++.++..+..+|..-.|.++.+++.++.-.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---- 238 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---- 238 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----
Confidence 57889999999999999999999999876332 1246778888888999999999998887664211
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 341 (944)
.|+ .| ........+|.+|...|+.+.
T Consensus 239 ----------~Gd--------------------------------ra------------~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 239 ----------HGD--------------------------------RA------------LQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred ----------hCC--------------------------------hH------------HHHHHHHHHHHHHHhcccHhH
Confidence 010 00 113445566677777777777
Q ss_pred HHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002273 342 AIVFYELAFHFNPH------CAEACNNLGVIYKDRDNL-----DKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 404 (944)
Q Consensus 342 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 404 (944)
|..-|+.+...... ..+++...+.++....-. -.|++.-++++++...- -..+..++.+|..+
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~ 344 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSK 344 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 77666666654211 134444555555443322 34777777777764332 34778889999888
Q ss_pred CCHHHHHHHHHHHHH
Q 002273 405 GKMDAAAEMIEKAIA 419 (944)
Q Consensus 405 g~~~~A~~~l~~al~ 419 (944)
|.-++-...+.++-+
T Consensus 345 gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 345 GLQDELRAHVVRAHE 359 (518)
T ss_pred cchhHHHHHHHHHHH
Confidence 887776666666543
|
|
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=112.56 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=103.8
Q ss_pred CCeEEEecCC----CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 681 GFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 681 ~~~~f~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
+..+++.+.+ ..|..+.+++++..+ .++.+|+++|.+.. .. .++|.+.|...+..+.
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~----~~------------~~~v~~~g~~~~~~~l 300 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP----FT------------AGNVVNHGFETDKRKL 300 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc----cc------------ccceEEecCcCCHHHH
Confidence 3334555554 246667888877764 36789999886411 00 2568888877667788
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc---------CCHHHHHHHHH
Q 002273 757 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---------KNEDEYVQLAL 826 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~---------~~~~~y~~~a~ 826 (944)
...|+.+|||+-|.-+ +.|+|.+|||+||+|||+ +++| |++|+|. .|.++..+
T Consensus 301 ~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~--- 363 (405)
T PRK10125 301 MSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ--- 363 (405)
T ss_pred HHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh---
Confidence 9999999999877766 889999999999999999 8888 7776662 35555554
Q ss_pred HHhcCHHHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 827 QLASDVTALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 827 ~l~~d~~~~~~-~r---~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.|++.+.+ ++ ...|++.. ..|+.+.++++++++|++
T Consensus 364 --~~~~~~~~~~~~~~~~~~r~~~~--~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 364 --LSKPEIAQAVFGTTLAEFSQRSR--AAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred --ccCHHHHHHhhhhHHHHHHHHHH--HhCCHHHHHHHHHHHHHh
Confidence 245544443 22 33455543 349999999999999975
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-07 Score=105.45 Aligned_cols=224 Identities=16% Similarity=0.116 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
.+..+.|++.+..+|+..-.|......+.+.++.++|.+..++++.. ++...+-..++..+|.++...
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~----------- 1509 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA----------- 1509 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh-----------
Confidence 34556788888888988888888888888899999999999988864 555555555555555554432
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (944)
-|.-+...+.|+++.+... ...++..|..+|...+++++|.++|+..++...+....|..++..
T Consensus 1510 ---------------yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1510 ---------------YGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred ---------------hCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2344666777888777642 246788899999999999999999999999988889999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
++.+++-++|...+++|++.-|. +.+.....|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 99999999999999999999887 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 002273 445 IDAYEQCLKIDPDS 458 (944)
Q Consensus 445 ~~~~~~al~l~P~~ 458 (944)
...|++++.+.=.-
T Consensus 1654 R~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHhcCCCh
Confidence 99999999875443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-08 Score=96.12 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=102.5
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCH
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRL 132 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 132 (944)
++-.+.|..+...+.+.++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344556777777777776666554 6778999999999999999999999999887653 45899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~ 181 (944)
++|+..+++++.+.|.....+..++.++..+|..+...|++++|+..+.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999999999999998888888888888888878888775554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-08 Score=99.44 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 415 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~ 415 (944)
.++-+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4566666777788888888888888888888888888888888888888888888888888877643 4568888999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 416 ~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+++..+|++..+.+.||..++..|++.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999988887654
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=108.66 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=113.5
Q ss_pred CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 692 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 692 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
.|....+++.+ ++..|+.+++++++. .+..++.+.+.+ +. .++|.|.|.+. +....|..+|+++-
T Consensus 215 ~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~-~~~v~~~G~~~---~~~~~~~~aDl~I~--- 279 (391)
T PRK13608 215 SKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KS-NENVLILGYTK---HMNEWMASSQLMIT--- 279 (391)
T ss_pred chhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---cc-CCCeEEEeccc---hHHHHHHhhhEEEe---
Confidence 36555666654 445578888776543 223445555433 33 35899999863 56667788999984
Q ss_pred CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCC
Q 002273 772 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 851 (944)
Q Consensus 772 ~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~ 851 (944)
-+||.|+.|||++|+|||+..-..-.....+-++...|.. +++.|.++.++...+|.+|++.+++|++..++.. .-
T Consensus 280 k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~ 355 (391)
T PRK13608 280 KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNEQLTNMISTMEQDK---IK 355 (391)
T ss_pred CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhc---CC
Confidence 2578899999999999998631111234555667777776 3467999999999999999999999999998763 33
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 002273 852 CDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 852 ~~~~~~~~~~e~~~~~~~~ 870 (944)
++....+..+++.+..+-+
T Consensus 356 ~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 356 YATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CCHHHHHHHHHHHhhhhhh
Confidence 8899999999988775544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-05 Score=83.72 Aligned_cols=296 Identities=19% Similarity=0.122 Sum_probs=172.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 200 (944)
-|.+....|+-..|.+.-.++-++-..+.+.. +...-++.....|+++.|.+.|+.++. +|+. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepL-----IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPL-----IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHH-----HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 45666678899999999888876655555542 233345556678999999999998876 3432 1122223233
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhh
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~ 279 (944)
-...|..+.|..+-+++....|.-+.++...-...+..|+++.|++..+......--.. .+....+.++.....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~----- 238 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM----- 238 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999998888888889999999999999887654321111 011111111110000
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (944)
-....+...|...-.+++++.|+....-..-+..+++.|+..++-.+++.+.+..|. +.
T Consensus 239 -------------------s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~- 297 (531)
T COG3898 239 -------------------SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD- 297 (531)
T ss_pred -------------------HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH-
Confidence 011223455555566666666666655555666666666666666666666665554 21
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH---HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQM---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++.+|....--+.++.-+++ ...+.|++.+.....+..-+..|++..|..--+.+....|. ..++..|+.+-.
T Consensus 298 ---ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIee 373 (531)
T COG3898 298 ---IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEE 373 (531)
T ss_pred ---HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHh
Confidence 22222222222223322322 23345555555555555555566666555555555555554 344555555544
Q ss_pred Hc-CCHHHHHHHHHHHHh
Q 002273 437 DA-GSISLAIDAYEQCLK 453 (944)
Q Consensus 437 ~~-g~~~eA~~~~~~al~ 453 (944)
.. |+-.++..++-++++
T Consensus 374 AetGDqg~vR~wlAqav~ 391 (531)
T COG3898 374 AETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hccCchHHHHHHHHHHhc
Confidence 44 555555555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-08 Score=86.68 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45677777777888888888888888888877777888888888888888888888888888887777888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 002273 439 GSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~ 457 (944)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-09 Score=83.90 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 456 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g-~~~eA~~~~~~al~l~P 456 (944)
++..+..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777776
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=90.54 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (944)
.+..++..|..|-..|-..-|.--|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+..+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46678888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
+--|++.-|.+-+.+-.+.+|+++.-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999999999998753
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=96.01 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456678889999999999999999999998876653 46888899999999999999999999999999888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
|.++...|+...+...+++++. .+++|++++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 9999888888777766665543 26788999999999999873
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.5e-06 Score=92.15 Aligned_cols=308 Identities=15% Similarity=0.131 Sum_probs=185.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
-...|....+.|-.++|+.+|++.-. +-.+-..|...|.+++|.+..+.--++. --..|++.+..+...+
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhc
Confidence 34456666777888888888887644 3345566778888888887665432222 2346888899999999
Q ss_pred CHHHHHHHHHHH----------HHcCCCChhHHhHH---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 131 RLVEAAESYHKA----------LSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (944)
Q Consensus 131 ~~~~A~~~~~~a----------l~~~p~~~~~~~~l---a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (944)
+.+.|+++|+++ +..+|...+.+... -.+|...|..+...|+.+.|+.+|..+- -|+.+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~ 944 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSM 944 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhh
Confidence 999999999886 22233221111000 1235556667777777777777777643 35566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHH
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV------SPNFEIAKNNMAIALTD 271 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~ 271 (944)
-.+..-+|+.++|-.+.++ ..+..+.+.+|+.|...|++.+|+..|.++-.. ...+. ..-.++.+...
T Consensus 945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLALM 1018 (1416)
T ss_pred eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHhh
Confidence 6666677777777665544 356678899999999999999999988876433 22211 01111111111
Q ss_pred hhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHH--------HH--HhCC-CCHHHHHHHHHHHHHcCChH
Q 002273 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK--------AL--YYNW-HYADAMYNLGVAYGEMLKFD 340 (944)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~--------al--~~~p-~~~~~~~~la~~~~~~g~~~ 340 (944)
.+..+...+...+... .........+|.+.|.+.+|++..=+ ++ .+++ .++..+..-+..+....+|+
T Consensus 1019 s~~~d~v~aArYyEe~-g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEEL-GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred cCchhHHHHHHHHHHc-chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 1222122222222111 11222233456666666666654321 11 1233 36778888888888888888
Q ss_pred HHHHHHHH------HHhh----------------CCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002273 341 MAIVFYEL------AFHF----------------NPH---------CAEACNNLGVIYKDRDNLDKAVECYQMA 383 (944)
Q Consensus 341 ~A~~~~~~------al~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (944)
+|..++-. ++.+ .|. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 88776543 3332 111 1356777888888888888887777665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=94.55 Aligned_cols=99 Identities=22% Similarity=0.208 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHH
Q 002273 304 DINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 304 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 378 (944)
.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444443333332 3344555555555555555555555555443331 2345555555555555555555
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+|+++++++|.....+.++|.++.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHH
Confidence 555555555555555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-06 Score=84.20 Aligned_cols=152 Identities=32% Similarity=0.461 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.+++..+..++...+.........+. ++...|++++|...+++++...| .....+...+..+...+++++|+..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 44455555554444443333333333 67777777777777777766555 345555566666677778888888888
Q ss_pred HHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 382 MALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 382 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.+++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888777 57778888888888888888888888888887776667777777777667788888888888888886
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.8e-08 Score=97.45 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVEC 379 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 379 (944)
.+.++.+.-++.-+..+|++.+-|..||.+|...|+++.|...|.+++++.|++++.+..+|.++..+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346778888999999999999999999999999999999999999999999999999999999887643 56799999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 380 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
++++++.+|.+..+.+.||..+++.|+|.+|+..++..++..|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999987653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=88.91 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=101.6
Q ss_pred HcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 408 (944)
..++...+...+++.++.+|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5788889988999999999988 5678889999999999999999999999987665 347888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
+|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999763 3344457788899999999999999999999875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-05 Score=81.77 Aligned_cols=225 Identities=30% Similarity=0.408 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~ 207 (944)
+.+..+...+...+...+.. .........+..+...+++..+...+...+. ..+.....+...+..+...+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 37 GELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 45555555555555554442 0111244555566666777777777777665 5666677777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPN---FEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
..++..+.+++...+.........+. ++...|++++|...+++++...|. ...........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 176 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL--------------- 176 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH---------------
Confidence 77777777777766665444455555 777788888888888877665542 11111111111
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
+...+++++++..+.+++...+. ....+..++..+...+++++|+..+..++...|.....+..
T Consensus 177 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (291)
T COG0457 177 ---------------LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241 (291)
T ss_pred ---------------HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhh
Confidence 11223444555555555554444 34444444444444444445555554444444443333444
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
++..+...+.++++...+.+++...|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 444444333444444444444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=98.51 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 002273 357 AEACNNLGVIYKDR-DNLDKAVECYQMALSIKP--NF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----- 424 (944)
Q Consensus 357 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----- 424 (944)
...+..+|.+|... |++++|+++|++|+++.. +. ...+..+|.++...|+|++|++.|++.....-++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44566778888888 899999999999988732 11 3477889999999999999999999998753221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 425 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 425 --~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
.+.++..+.|+...|+...|.+.+++....+|.........
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 24566788899999999999999999999999877665544
|
|
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-08 Score=113.05 Aligned_cols=160 Identities=17% Similarity=0.092 Sum_probs=117.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++++.+.|+ .|..+.+++++.++.+. +.+|+++|.+ .+...+.+.+...+. .++|+|.+... .....
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 556678877765 79999999999998864 3889998865 334556666665554 57888766554 45555
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDE 820 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------------~~~~~~ 820 (944)
..|+.+||+|-|+-+ +.|.+.+|||++|+|||+ +++| |++|+| ..|.++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------~~~g-------g~~e~v~~~~~~~~~~~G~~~~~~~~~~ 431 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-------RATG-------GLADTVIDYNEDTGEGTGFVFEGYNADA 431 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-------CcCC-------CccceEeCCcCCCCCCCeEEeCCCCHHH
Confidence 688999999998876 778999999999999998 6666 554443 246777
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 821 YVQLALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 821 y~~~a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+.+...++. .+++.+.+++++..+ ..|+++.+++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 777776655 466666665554432 24999999999999986
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-06 Score=84.92 Aligned_cols=169 Identities=13% Similarity=0.040 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 269 (944)
+......-|.+|...+++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+ .....++.++
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHH
Confidence 3345556678888999999998887763 34566666778888899999999999998877654 3344455555
Q ss_pred HHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 349 (944)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 349 (944)
..+... .+++.+|.-+|++.-+..+..+.....++.++..++++++|...++.+
T Consensus 180 v~la~g--------------------------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 180 VKLATG--------------------------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHhcc--------------------------chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 544322 334567777777777666666677777777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhhCCCCH
Q 002273 350 FHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFS 391 (944)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~ 391 (944)
+..++++++.+.++..+-...|.-.++. +.+.+....+|+++
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 7777777777777766666666554443 34444444455543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-09 Score=107.65 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.+-..|+.|+++|+|++|+.+|.+.+..+|.|+..+.+.+.+|+++..+..|...+..++.++.....+|...+..-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
|...+|.+.++.++++.|++.+....++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999999776544443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-06 Score=101.54 Aligned_cols=222 Identities=12% Similarity=0.026 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHHHHHHHHHHcCChHHH
Q 002273 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (944)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A 176 (944)
-.+..+.|++.+..+|+....|..+...+.+.++.++|.+..++|+.. ++...+-..++-.+|.++-+ .-|.-+.-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHH
Confidence 344567788889999999999999999999999999999999999974 55544444444444554443 34677778
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.+.|++|-+.. +...++..|..+|...+++++|.++|+..++...+....|..++..++++++-+.|...+++|++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 88888887753 23567888999999999999999999999999888899999999999999999999999999999888
Q ss_pred C--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 257 N--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334 (944)
Q Consensus 257 ~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 334 (944)
. +.......+.+ -++.|+.+.+..+|+..+..+|...+.|.-+...-.
T Consensus 1596 k~eHv~~IskfAqL------------------------------EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQL------------------------------EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred hhhhHHHHHHHHHH------------------------------HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 7 33333333322 344566688888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhhC
Q 002273 335 EMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~ 353 (944)
+.|+.+.+..+|++++.+.
T Consensus 1646 k~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcC
Confidence 8888888888888887764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=107.23 Aligned_cols=142 Identities=22% Similarity=0.202 Sum_probs=118.4
Q ss_pred hCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Q 002273 318 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--------DNLDKAVECYQMAL 384 (944)
Q Consensus 318 ~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 384 (944)
..|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++... .+..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345565554 445655655544 78999999999999999999999988877553 23456666777766
Q ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 385 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 385 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+ +|..+.++..+|..+...|++++|...++++++++|+ ..+|..+|.++...|+.++|++.|++|+.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 7777889999999999999999999999999999995 889999999999999999999999999999999885
|
|
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=96.63 Aligned_cols=128 Identities=15% Similarity=0.243 Sum_probs=86.9
Q ss_pred CeEEEecCCC--CcCCHHHHH-HHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 682 FITFGSFNNL--AKITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.++||.+++. .|-...+++ +|.++.++.|+..|.+.|... + ++.+. ..++|.|.|.+ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~--~----~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP--D----ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH--H----HHHHh------cCCCEEEcCCH---HHHHH
Confidence 4678888866 477788999 999999999999999987642 1 23222 24699999997 58999
Q ss_pred hcccccEEecCCCC--CCcccHHHhhhcCCcEEecCCCcccccch-hHHHhhcCCcccccCCHHHHHHHHHHHhcC
Q 002273 759 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVG-VSLLTKVGLKHLIAKNEDEYVQLALQLASD 831 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~--~~~~t~~eal~~gvPvvt~~g~~~~~r~~-~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d 831 (944)
.++.+||+|.|+.. +.+++.+|+|++|+|||+ ++.+ ..+....|..-++..|.+++++...+|..|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIA-------SDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEE-------EHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEE-------CCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999865 346799999999999999 4332 223333456667789999999999998876
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-07 Score=96.18 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CHHH
Q 002273 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (944)
Q Consensus 46 ~~~~~~~~~A~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (944)
.+....+..|..+ +..|+|++|+..|+++++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3568888898877 66899999999999999999987 589999999999999999999999999998877 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
++.+|.++..+|++++|+..|+++++.+|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=81.41 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 002273 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 422 (944)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p 422 (944)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35566666666666667777777777777766666667777777776666 56677777777666665
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-07 Score=84.44 Aligned_cols=199 Identities=17% Similarity=0.117 Sum_probs=148.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..+.-+++.|..|-..|-+.-|.--|.+++.+.|+.++++..+|..+...|+++.|.+.|...++++|....+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 45667788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
++--|++.-|.+.+.+-.+.+|+++--.. |..+ -...-+..+|...+.+-.+...+....|+..+. .+|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L-----WLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSL-----WLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHH-----HHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHh
Confidence 99999999999999999999999875311 1111 123346677776654433333322333332222 223
Q ss_pred CHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 206 QYDTALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
+..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++..+-
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2221 22334443333322 46889999999999999999999999887543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-08 Score=83.87 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 002273 130 GRLVEAAESYHKALSADPS 148 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (944)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00054 Score=74.73 Aligned_cols=422 Identities=12% Similarity=0.037 Sum_probs=260.5
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH-
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT- 120 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 120 (944)
...|.+...|+.+.+.+..+ .+++....|++.+...|..+.+|.......+..++|+.-.++|.+++..-= +.+.|.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~l 91 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKL 91 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHH
Confidence 56788999999999888777 999999999999999999999999999999999999999999999986432 234443
Q ss_pred HHHHHHHHcCCHHHHHHH----HHHHHH---cCCCChhHHhHHHHHHHH---HHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 121 HCGILYKDEGRLVEAAES----YHKALS---ADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~----~~~al~---~~p~~~~~~~~la~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
.+..+-...++...+... |+-++. .++.....|......+.. .|. +..+.+.+...+.|++++..--.+
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk-~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK-YEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHhcCcccc
Confidence 233444445555444333 333333 233333333332222111 222 233447778888999998753333
Q ss_pred HH-HHHH-----------HH--HHHHHcCCHHHHHHHHHHHHHhC-------CC-----------CHHHHHHHHHHHHHc
Q 002273 191 AP-AYYN-----------LG--VVYSELMQYDTALGCYEKAALER-------PM-----------YAEAYCNMGVIYKNR 238 (944)
Q Consensus 191 ~~-~~~~-----------la--~~~~~~g~~~~A~~~~~~al~~~-------p~-----------~~~~~~~la~~~~~~ 238 (944)
.+ .|.. .| .+-.....|..|...+++..... |. ..+.|.++...-...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 22 1111 11 11223345667777777664421 11 112233332222111
Q ss_pred C------C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 239 G------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 239 g------~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
+ . ...-.-.|++++..-+-.++.|+..+..+...++... ..++.-.....-+++..
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~----------------~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLT----------------EKGDVPDAKSLTDEAAS 314 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH----------------HhcccccchhhHHHHHH
Confidence 1 1 1122335677777777777788777776666554200 00000011112367888
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 311 YYKKALYYNW-HYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 311 ~~~~al~~~p-~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
+|++++...- .+...++.++..-...-+ ++.....+++++.+...+ .-++..+-..-.+..-.+.|...|.+|-+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 8888876432 234455555544433333 777788888888774433 34566666666677778899999999987
Q ss_pred hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhhh
Q 002273 386 IKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAG 462 (944)
Q Consensus 386 ~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l--~P~~~~a~ 462 (944)
..-....++..-|.+ |...++.+-|...|+-.+...++.+..-+.....+...|+-..|...|++++.. .|+...-.
T Consensus 395 ~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~I 474 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEI 474 (656)
T ss_pred ccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHH
Confidence 655444444444443 567899999999999999999999999888899999999999999999999987 55544333
Q ss_pred hhHHHHhhhccCCChHHHHHH
Q 002273 463 QNRLLAMNYINEGHDDKLFEA 483 (944)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (944)
+.+.+... ..-|+....++.
T Consensus 475 w~r~l~yE-S~vGdL~si~~l 494 (656)
T KOG1914|consen 475 WDRMLEYE-SNVGDLNSILKL 494 (656)
T ss_pred HHHHHHHH-HhcccHHHHHHH
Confidence 34333221 233555544433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=91.45 Aligned_cols=73 Identities=26% Similarity=0.371 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 345566666666666677777777777666655432 3466666777777777777777777777766665544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=98.70 Aligned_cols=123 Identities=23% Similarity=0.223 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
......|..|++.|+|..|...|++++..-.... .-+.++..... ++ ...++.|++.++.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--AL-----KLACHLNLAACYLK 269 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HH-----HHHHhhHHHHHHHh
Confidence 3455678888888888888888888876522110 00001100000 00 02345666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
+++|.+|+..+.++|.++|++..++|..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666665554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=85.08 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.4
Q ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (944)
.+|+|++|+.+|+++++.+|. +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 002273 138 SYHKA 142 (944)
Q Consensus 138 ~~~~a 142 (944)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-08 Score=79.80 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.+|..+...|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00067 Score=72.94 Aligned_cols=406 Identities=13% Similarity=0.066 Sum_probs=226.0
Q ss_pred ChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcC---CCC--
Q 002273 47 EGKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD---PQN-- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~-- 115 (944)
-..+++.+|+.+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+. |..
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3567889999999999 9999999999999887763 456677777654 6789999999999998653 322
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC-
Q 002273 116 --ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHY- 190 (944)
Q Consensus 116 --~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~- 190 (944)
.++...++.+|.... .+..|...+++++++..+.+.- -...++.++....-..++..|++.+.-..+. ++..
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~ 162 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICF 162 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhh
Confidence 356788899988877 8899999999999998776632 2446788999999999999999985433222 1111
Q ss_pred --HHHHHHH--HHHHHHcCCHHHHHHHHH---HHHHhCCCCH---H----HHHHHHHH-HHHcCCHHHHHHHHHHHHH--
Q 002273 191 --APAYYNL--GVVYSELMQYDTALGCYE---KAALERPMYA---E----AYCNMGVI-YKNRGDLESAIACYERCLA-- 253 (944)
Q Consensus 191 --~~~~~~l--a~~~~~~g~~~~A~~~~~---~al~~~p~~~---~----~~~~la~~-~~~~g~~~~A~~~~~~al~-- 253 (944)
..+.+.+ +.++...-+..+.....+ +..+....++ + .+..+-.+ |...|+...+...+++.-+
T Consensus 163 ~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~si 242 (629)
T KOG2300|consen 163 PYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSI 242 (629)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 1122222 333333334434444433 3333322221 1 22333333 3446776666665554322
Q ss_pred -h-CCC-----------c-HH--HHHH----HHHHH------------HHhhhhhhhhHHHHH-hhcCCCCCchh-----
Q 002273 254 -V-SPN-----------F-EI--AKNN----MAIAL------------TDLGTKTYGRALLLF-RLNGSNFQSPF----- 295 (944)
Q Consensus 254 -~-~p~-----------~-~~--~~~~----la~~l------------~~~~~~~~~~a~~~~-~~~~~~~~~~~----- 295 (944)
. .+. + +. .|.- .+.++ .+...+...+++... +....+.....
T Consensus 243 qtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~k 322 (629)
T KOG2300|consen 243 QTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFK 322 (629)
T ss_pred hccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 1 110 0 00 0000 00111 111111111111111 11111111111
Q ss_pred -------HHHhhhcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C-
Q 002273 296 -------FELVKLEGDINQGVAYYKKALYY---NWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C- 356 (944)
Q Consensus 296 -------~~l~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 356 (944)
+.+-.-.|++.+|++....+.+. .|. .+.+.+.+|......+.++.|...|..+.+.... +
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Confidence 11222356666666666555443 232 2345566666666667777777777776665322 2
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Q 002273 357 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y 424 (944)
Q Consensus 357 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~ 424 (944)
+....++|..|...++-+.-.+.++ .+.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 2334456667776655443333222 233331 235556666666777777777777777665411 0
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 425 -----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 425 -----~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.-.+..|+.+....|+..++.+..+-++++....
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 2234456666666777777777666666554333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-07 Score=85.33 Aligned_cols=127 Identities=16% Similarity=0.064 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHC 122 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (944)
...+..+......++...+...++++++.+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+.+.+
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344455555555666666666666666666665 4455566666666666666666666666655433 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (944)
+.++...|++++|+..++.. ++... .+.++..+|.++...|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~----~~~~~----~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI----PDEAF----KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc----cCcch----HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666666666666666441 11000 1223444555555555555555555554
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-07 Score=100.00 Aligned_cols=297 Identities=14% Similarity=0.117 Sum_probs=163.1
Q ss_pred cCcHHHHHHhhhhhccC-CcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC--CC--------HHHHHHHhHhCCc
Q 002273 522 THSVSYFIEAPLVYHDY-QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--ID--------EKKVAAMVREDKI 590 (944)
Q Consensus 522 ~h~v~~~~~~~l~~~d~-~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~--~~--------~~~~a~~i~~d~i 590 (944)
+.|--.++.+++..... ..|++.+..++..-+. ...+.....-..+....+.+ -+ -.++++.+++.++
T Consensus 9 tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p 87 (365)
T TIGR00236 9 TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREM-LDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKP 87 (365)
T ss_pred cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHH-HHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45555566677665544 4688888887765422 22222222111122223322 22 1457888999999
Q ss_pred cEEEecCCCCCCCchhhhc--cCCcceeeecccCCCCCCCC--CccE-------EEecCCCCCcccc-------cccccc
Q 002273 591 DILVELTGHTANNKLGMMA--CQPAPVQVTWIGYPNTTGLP--TIDY-------RITDSLADPPETK-------QKHVEE 652 (944)
Q Consensus 591 dilvdl~g~t~~~~~~~~a--~r~ApvQ~~~~G~p~t~g~~--~~Dy-------~i~d~~~~p~~~~-------~~~~e~ 652 (944)
||++=. |.+...-.+..+ .+-.|| +..-|...|.+.. .-|- .++|.++.|.+.. ..-.|+
T Consensus 88 Div~~~-gd~~~~la~a~aa~~~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~ 165 (365)
T TIGR00236 88 DIVLVQ-GDTTTTLAGALAAFYLQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKADS 165 (365)
T ss_pred CEEEEe-CCchHHHHHHHHHHHhCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCccc
Confidence 999644 222111111222 223455 2222222222211 1111 1345555554331 112345
Q ss_pred eEEcCCCccc--cCCCC-C-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHH
Q 002273 653 LIRLPECFLC--YTPSP-E-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 725 (944)
Q Consensus 653 ~~~lp~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 725 (944)
+..+++.... +.+.. . ........+ .++.++++++++. .|..+.+++++.++.+..|+.++++.+.+- ..
T Consensus 166 I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~ 242 (365)
T TIGR00236 166 IFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--PV 242 (365)
T ss_pred EEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--hH
Confidence 6666654321 11110 0 011111122 2345566666543 366789999999998888999888765431 23
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhH
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVS 803 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~ 803 (944)
.+..+. +..|. .++|.|++..+ ..+++..+..+|+++-+. |+.++||+++|+|||+.. |+..-
T Consensus 243 ~~~~~~---~~~~~-~~~v~~~~~~~-~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~~~~~e------ 307 (365)
T TIGR00236 243 VREPLH---KHLGD-SKRVHLIEPLE-YLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDTTERPE------ 307 (365)
T ss_pred HHHHHH---HHhCC-CCCEEEECCCC-hHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCCCCChH------
Confidence 444333 23455 47899999876 678999999999997432 344799999999999963 22111
Q ss_pred HHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 804 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 804 ~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
+...|..-++..|+++..+...++.+|++.+++++.
T Consensus 308 -~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~ 343 (365)
T TIGR00236 308 -TVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSN 343 (365)
T ss_pred -HHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhh
Confidence 112354445667999999999999999877666654
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-08 Score=78.83 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (944)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777777777777777777777777777777777777777777777777777777777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=84.07 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+|++++|+..++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777777776664 344566667777777777777777766 556666666666667777777777777777
Q ss_pred HHHH
Q 002273 448 YEQC 451 (944)
Q Consensus 448 ~~~a 451 (944)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-08 Score=103.72 Aligned_cols=240 Identities=15% Similarity=0.049 Sum_probs=172.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+...|+-|+++|.|++|+.+|.+++..+|.++..+.+.+..|++++.|..|...++.++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
+..+|.+-++.++.+.|++.+....++.+-.- .++ +-+.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl----------------------------------~E~----~I~~KsT 221 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSL----------------------------------RER----KIATKST 221 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcch----------------------------------Hhh----hHHhhcC
Confidence 99999999999999999876554433322110 000 0000111
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|. +-.|.+-..+++.+. .-|..+...|.++.++.++-.-+....++...-.+ +.
T Consensus 222 ~G-----------------~~~A~Q~~~Q~l~~K--------~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~ 275 (536)
T KOG4648|consen 222 PG-----------------FTPARQGMIQILPIK--------KPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DE 275 (536)
T ss_pred CC-----------------CCccccchhhhcccc--------CcchhhhhhhccccceeEeeccccccCccccCccc-HH
Confidence 11 112222222222111 12445556677777777777666555544444444 66
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.|.+..++++|+...-+++..+|.........+.+---.|...++...++.++.+.|.+..+..
T Consensus 276 ~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 276 DIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred HHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchh
Confidence 6777888888888888888887776555555555556667778888999999999998776554
|
|
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-07 Score=102.34 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=120.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~~~~~~~~~~~~~~--------gi-~~~rv 744 (944)
+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. .+......+++.+++. |- +-.-|
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 44567787866 89999999999999999997 4577665443 2223344555555443 21 11114
Q ss_pred EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002273 745 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 817 (944)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~ 817 (944)
++++...+.++..+.|+.+||+|-|+-+ +-+.|++|||+||+| ||. |+++++. ..++ ..++ ..|
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~~-~~l~-~gllVnP~d 408 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGAA-QELN-GALLVNPYD 408 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCCh-HHhC-CcEEECCCC
Confidence 5544333478999999999999999977 669999999999999 776 5554211 1122 3333 468
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 818 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 818 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
.++..+...++.+ +++++++..+++++++.+ ||...+++.+...+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 8888888877776 667888888888888642 79999998876544
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-07 Score=95.78 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCC
Q 002273 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (944)
Q Consensus 50 ~~~~~A~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (944)
.++..|...+..+ ..+.|+.+|.+++ +.+|..+.++-.++.|++.. ....+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466666665554 3456777788888 77777788888888777644 2344566777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
++.++..+|.++...++++.|...|++++.++|+...+ ++..|......|+.++|++.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777766443 45555555566667777777777666666544333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 002273 195 YNLGVV-YSELMQYDTALGCYEK 216 (944)
Q Consensus 195 ~~la~~-~~~~g~~~~A~~~~~~ 216 (944)
...-.+ .+-....++|+..|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 222222 2333445555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-07 Score=97.40 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 304 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 304 ~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
..+.|+.+|.+++ ..+|..+.+|..++.++... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3477888888888 77888888888888877654 12345666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 450 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~ 450 (944)
+++.|+..|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666554333222222 2223344555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=87.20 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 432 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la 432 (944)
.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 33445566666666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 433 VLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.||..+|+.++|+.+|+.+++ .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 777777777777777777766 3443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-05 Score=78.75 Aligned_cols=96 Identities=17% Similarity=-0.005 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+-..+..|+...-.|+|+.|.+-|+.++. +|+. .-.+..+-......|..+.|+.+.+.+...-|.-+.+....-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34455667788888999999999988875 3331 112222333345678999999999999999999888888888888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALS 144 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~ 144 (944)
+..|+++.|++..+....
T Consensus 199 ~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 199 CAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HhcCChHHHHHHHHHHHH
Confidence 889999999998876654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00074 Score=78.06 Aligned_cols=431 Identities=12% Similarity=0.017 Sum_probs=236.1
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.|...-+....|..+++.|++++|..+++..-...+++...+-.+-.||..++++++|..+|++++..+|+ .+.++.+-
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 34566677888999999999999998888877777788889999999999999999999999999999999 78888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH---------------------------------------HHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT---------------------------------------DLG 164 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------------------------~lg 164 (944)
.+|.+.+.|.+-.+.--+..+..|+.+........+.. ..-
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 88888888776555555555555554332211111100 011
Q ss_pred HHHHHcCChHHHHHHHHH-HHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHH-------
Q 002273 165 TSLKLAGNTQDGIQKYYE-ALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN-MGVI------- 234 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~------- 234 (944)
.++..+|++++|...+.. ..+. .+.+..........+...+++.+-.+...+++...+++...+.. .-.+
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~ 277 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKE 277 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccc
Confidence 245567888888888833 2222 34444455566778888999999999999999988887222211 0111
Q ss_pred -----HHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchh--HHHhhhcCCHH
Q 002273 235 -----YKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPF--FELVKLEGDIN 306 (944)
Q Consensus 235 -----~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~ 306 (944)
+...+..+..++..++.+......+ -++..+..-+...|..+ +.+..+...-.....-. ...+...=...
T Consensus 278 ~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~e--e~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~ 355 (932)
T KOG2053|consen 278 PAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSE--EMLSYYFKKFGDKPCCAIDLNHYLGHLNID 355 (932)
T ss_pred cchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChH--HHHHHHHHHhCCCcHhHhhHHHhhccCCHH
Confidence 1111222222232233222211111 11111111111111111 00000000000000000 00000000111
Q ss_pred HHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCh-----HHHHHHH-------HHHHhh----CCC---CHHHHH
Q 002273 307 QGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKF-----DMAIVFY-------ELAFHF----NPH---CAEACN 361 (944)
Q Consensus 307 ~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~-----~~A~~~~-------~~al~~----~p~---~~~~~~ 361 (944)
+-.....+.+...+... ..+...-.+....|.| +.-..++ ++-++. .|. ..+.+.
T Consensus 356 q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~l 435 (932)
T KOG2053|consen 356 QLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELL 435 (932)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHH
Confidence 11222222222222211 0111111222223321 1112222 222121 122 123333
Q ss_pred HHH-----HHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 362 NLG-----VIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 362 ~la-----~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
.++ ..+.+.++ .-+|+-.++..+..+|.+......+-.+|...|-+..|.+.|+..--.+-.....-+.+-.
T Consensus 436 lLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~ 515 (932)
T KOG2053|consen 436 LLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFR 515 (932)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHH
Confidence 333 44555554 4588999999999999999999999999999999999999987652222221222233445
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHH
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~ 479 (944)
.+...|++.-+...+...+...-++..-.. .+.++.| ..|...+
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~-eyI~~AY-r~g~ySk 559 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETP-EYIALAY-RRGAYSK 559 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhH-HHHHHHH-HcCchhh
Confidence 566778998898888888888766543322 2344444 3344433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=85.71 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=99.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...+..-+..+..|..++.+|++++|..+|+-+...+|.+.+.++.+|.|+..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
.|.|++.+|+.++|+..|+.++. .|.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999998 3443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-05 Score=80.15 Aligned_cols=254 Identities=15% Similarity=0.096 Sum_probs=168.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
++-.|+|.+++..-++.-... ........+.+.|..+|++...+.-....- .....+...++.....-++.++-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHH
Confidence 344577777777666554433 556667777777888887765544333221 1112344444554444445444444
Q ss_pred HHHHHHHhCCCcHH-HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 247 CYERCLAVSPNFEI-AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADA 325 (944)
Q Consensus 247 ~~~~al~~~p~~~~-~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 325 (944)
.+.+.+........ .+..++ +.++...+++++|++..... .+.++
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~a-----------------------------a~i~~~~~~~deAl~~~~~~-----~~lE~ 139 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLA-----------------------------AIIYMHDGDFDEALKALHLG-----ENLEA 139 (299)
T ss_pred HHHHHHHhhccchhHHHHHHh-----------------------------hHHhhcCCChHHHHHHHhcc-----chHHH
Confidence 43333322211111 111111 12355677888888877663 33556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
...-..++.++.+++-|.+.++++.+++.+ ..+..||..+.. .+++.+|.-+|++.-+..|..+..+...+.+.
T Consensus 140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 140 AALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 666677888889999999999998888755 344445555443 34688899999998887888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCChh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 460 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~-~~~~al~l~P~~~~ 460 (944)
..+|++++|...++.++..++++++++.++..+-...|.-.++.+ ...+....+|+++-
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999999998888888766554 45666666777653
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=102.52 Aligned_cols=261 Identities=17% Similarity=0.140 Sum_probs=146.6
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC--Ccceeeecc-cCCCC---CCCCCccEEEecCCCCCcccccccccc
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWI-GYPNT---TGLPTIDYRITDSLADPPETKQKHVEE 652 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~-G~p~t---~g~~~~Dy~i~d~~~~p~~~~~~~~e~ 652 (944)
..+.+.|++.++||++--+.++ +-...++.| ..|+=+.-. .+|+- ......|.+++.. +......-..+
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~ 155 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPK 155 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCC
Confidence 3567788999999998765444 223333333 234422211 11110 0112334444321 10000122345
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 653 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 653 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
+..+|+..-. ... ..........++.+..+++.+.+. .|.....+ +++.++... | -++++.|.+. .+.
T Consensus 156 i~vi~n~v~~-~~~-~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~-----~~~ 226 (357)
T PRK00726 156 AVVTGNPVRE-EIL-ALAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKGD-----LEE 226 (357)
T ss_pred EEEECCCCCh-Hhh-cccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCCc-----HHH
Confidence 6666653211 100 000111112333444455555543 34333333 666666443 4 4555666542 245
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcc---cccchhHHHh
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLT 806 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~ 806 (944)
+.+..+ +|+. |.|.+.+ .++...+..+|+++-+ +|+.|++|||.+|+|||+.+.... .....+.++.
T Consensus 227 ~~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 227 VRAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred HHHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 555555 7773 8998885 4677788889999843 356889999999999999764211 1112245566
Q ss_pred hcCCccccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 807 KVGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 807 ~~gl~~~v~-~~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
..|..-++. .| ++++.+....+.+|++.++++++..++.. .-++..+.++.+++..+
T Consensus 297 ~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 297 DAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred HCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 667655553 34 89999999999999999999999887663 33677788777776544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-07 Score=102.58 Aligned_cols=144 Identities=16% Similarity=0.071 Sum_probs=107.5
Q ss_pred HHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 002273 75 LEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE--------GRLVEAAESYHK 141 (944)
Q Consensus 75 l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~ 141 (944)
....|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++... .+..++....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556665554 556666655544 67888899999999999888888877776543 234556666666
Q ss_pred HHHc--CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (944)
Q Consensus 142 al~~--~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (944)
++.+ ++..+. ++..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~-------~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPR-------IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 444433 355566667778999999999999999998 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 002273 220 ERPMYAE 226 (944)
Q Consensus 220 ~~p~~~~ 226 (944)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-07 Score=94.11 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=81.1
Q ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002273 357 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 429 (944)
Q Consensus 357 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~ 429 (944)
....+..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555554 45678888888888888888876 4688888888888888888888888888777664 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888776543
|
|
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-07 Score=101.37 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=100.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHH-HHHHHHHHhHcCCceEE-EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 676 PALTNGFITFGSFNNL--AKITPKV-LQVWARILCAVPNSRLV-VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~--~K~~~~~-~~~~~~il~~~p~~~l~-~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
.+++++..++.++.+. .|...++ +++...+. . ++..++ +.|.+ ..+.+.+.++++ .++|.|.|.+
T Consensus 175 ~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-----~~~~l~~~~~~~---~~~v~~~g~~- 243 (350)
T cd03785 175 LGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-----DLEEVKKAYEEL---GVNYEVFPFI- 243 (350)
T ss_pred cCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----cHHHHHHHHhcc---CCCeEEeehh-
Confidence 3455555455555433 2322233 24444433 2 455544 44443 335566666665 3789999985
Q ss_pred CcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcc---cccchhHHHhhcCCcccccC---CHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLA 825 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a 825 (944)
.+....|..+|+++-+ +|++|++|||.+|+|||+.+-... .....+..+...|..-++.. |.+++.+..
T Consensus 244 --~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 244 --DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred --hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHH
Confidence 5777888999999943 367899999999999998642211 11112345655677666653 799999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHh
Q 002273 826 LQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 826 ~~l~~d~~~~~~~r~~~~~~~ 846 (944)
..|.+|++.++.++...++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999998887653
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-07 Score=104.07 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=117.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCC-CCH----HHHHHHHHHHHHcCCC-----CCc
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCD----SVRHRFLSTLEQLGLE-----SLR 743 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~----~~~~~~~~~~~~~gi~-----~~r 743 (944)
.+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. .+. ..++.+.+...+.+.. -..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~ 341 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP 341 (460)
T ss_pred CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 344567777765 89999999999999999997 4677776442 121 2333343333332221 134
Q ss_pred EEEc-cCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--c
Q 002273 744 VDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--A 815 (944)
Q Consensus 744 v~~~-~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~gl~~~v--~ 815 (944)
|+|. +.++ ..+..+.|+.+||++-|+-. +-|.|.+|||+||+| ||+ |+.+++.-. |-..++ .
T Consensus 342 v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~--~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE--LSGALLVNP 411 (460)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh--cCCCEEECC
Confidence 6555 4444 78999999999999998876 669999999999999 665 544322111 333444 3
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
.|.+++.+...++.+++ ++++.+.++.++.+. -||...++..+..
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 58999999998888855 677777777777753 3899998887654
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=87.82 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (944)
++...+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|+|++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44569999999999999999999999999999985 7899999999999999999999999999987654 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
.+|.+...+|+.++|...|+++++.+|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999998765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-07 Score=95.00 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------hhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSY--------KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
....|..|++.|+|..|...|++++..-... ......+-.++.+++.++.+++++.+|+...+++|..+|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 4456788888899999999988887753311 11122233467788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAVSP 256 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 256 (944)
..+++..|.++..+|+|+.|+..|++++++.|.|..+...+..+..+..++.+. .+.|.+++...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888888888888888888888888888888888888888777766655544 667777766543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=80.97 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=138.7
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (944)
...+..++..|...++.|+|++|+..|+.+....|.. ..+.+.++.++++.+++++|+..+++.+++.|.++ .+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4478999999999999999999999999999988864 67899999999999999999999999999988775 46
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 119 HTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 119 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
++..|.+++.. .-..+|+..|+..+...|+..-+.... .-+..+...+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~------------------~~i~~~~d~L------ 166 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK------------------ARIVKLNDAL------ 166 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH------------------HHHHHHHHHH------
Confidence 77788877653 224567888899999999875442111 1111111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (944)
+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-+-.-...|++
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 1223456777777888888888888777765543 4567777777788887777766544443344444
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-05 Score=86.08 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=123.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCC--------CHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQ--------NAC 117 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~--------~~~ 117 (944)
..+........+++..+...+....+.+.....+.+.+++..+..++..|++.+|.+.+...- ...|. .-.
T Consensus 205 k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 205 KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCI 284 (696)
T ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhe
Confidence 344555566677888888888888888888888899999999999999999999999876542 22222 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCC--ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 118 AHTHCGILYKDEGRLVEAAESYHKALSA---------DPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
.+.++|.++++.|.|.-+..+|.++++. .|. ..-....--.++++.|..+...|+...|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 4688999999999999999999999961 111 11111122346889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~ 203 (944)
.-.++..|..++.++..
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 99999999999998875
|
|
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.3e-07 Score=99.09 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=160.3
Q ss_pred HHHhhhhhccC-CcEEEEEEeccccCChhhH-HHHHH-HhhhCCceEeccCCC----------HHHHHHHhHhCCccEEE
Q 002273 528 FIEAPLVYHDY-QNYKVVVYSAVVKADAKTI-RFREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILV 594 (944)
Q Consensus 528 ~~~~~l~~~d~-~~fev~~y~~~~~~d~~t~-~~~~~-~~~~~~~~~~~~~~~----------~~~~a~~i~~d~idilv 594 (944)
.+.+++..... +.+++.++.++..-|..-. .+... .....+++..+.+-+ -.++.+.|++.++||++
T Consensus 14 ~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~ 93 (363)
T cd03786 14 KLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVL 93 (363)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 44555544433 4788988888765543321 11111 111123344444431 24567788899999987
Q ss_pred ecCCCCCCCchhhhccCCcceeeecc--cCCCCCCCCCccE-------EEecCCCCCccccccc-------ccceEEcCC
Q 002273 595 ELTGHTANNKLGMMACQPAPVQVTWI--GYPNTTGLPTIDY-------RITDSLADPPETKQKH-------VEELIRLPE 658 (944)
Q Consensus 595 dl~g~t~~~~~~~~a~r~ApvQ~~~~--G~p~t~g~~~~Dy-------~i~d~~~~p~~~~~~~-------~e~~~~lp~ 658 (944)
=. |++...-...++.|..-+.+... |. .|.-.+.++. .++|.++.|.+....+ .+++..+++
T Consensus 94 ~~-g~~~~~~~~~~aa~~~~iPvv~~~~g~-~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign 171 (363)
T cd03786 94 VL-GDTNETLAAALAAFKLGIPVAHVEAGL-RSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGN 171 (363)
T ss_pred Ee-CCchHHHHHHHHHHHcCCCEEEEeccc-ccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECc
Confidence 43 33322222334444333333221 21 1100011111 1355555554432221 244656665
Q ss_pred Cccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 659 CFLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 659 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
.... +.+... ....+...+++++.++..++++. .|..+.+++++.++... +.++++.+.+ ..+..
T Consensus 172 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~ 245 (363)
T cd03786 172 TMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPR 245 (363)
T ss_pred hHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHH
Confidence 4221 111111 11111233455565555566654 46677888888776543 4455554433 45677
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcC
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 809 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g 809 (944)
+++.+.+.|+..++|.|.+... ..+....|..||+++-+. | +.+.||+++|+|||+....+ ..-.+...|
T Consensus 246 l~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~S---g-gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g 315 (363)
T cd03786 246 IREAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDS---G-GIQEEASFLGVPVLNLRDRT-----ERPETVESG 315 (363)
T ss_pred HHHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcC---c-cHHhhhhhcCCCEEeeCCCC-----ccchhhhee
Confidence 7777788887457899988654 466777789999998443 2 45789999999999975321 111233346
Q ss_pred CcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002273 810 LKHLIAKNEDEYVQLALQLASDVTALANLR 839 (944)
Q Consensus 810 l~~~v~~~~~~y~~~a~~l~~d~~~~~~~r 839 (944)
..-++..|.++.++....+..|+..+..++
T Consensus 316 ~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 316 TNVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred eEEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 655666678999999999999986655553
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=96.02 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=109.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 327 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 327 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (944)
..+...+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455566678899999999999888865 566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
++.|++..+++++..|++.+.|+.|+.+|...|++++|+..+..+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999776643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=102.33 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
++.+.+++++..+.+..|+.++++.+++ ...++.+.+...+. |+. +.+.. .+....|+.+|+++-+
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~-- 268 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAA-- 268 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEEC--
Confidence 4568888999988888899998887642 24556677777777 663 44432 3567788999999864
Q ss_pred CCCcccHHHhhhcCCcEEecCCCcccccchhHHH---hhcCC----------ccccc--CCHHHHHHHHHHHhcCHHHHH
Q 002273 772 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVGL----------KHLIA--KNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 772 ~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l---~~~gl----------~~~v~--~~~~~y~~~a~~l~~d~~~~~ 836 (944)
+|++++||+++|+|||+.+.-.......+..+ ...|+ ++++. .|+++..+....|.+|++.++
T Consensus 269 --sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 269 --SGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred --ccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 47788899999999998654322221111111 12232 33443 467899999999999999999
Q ss_pred HHHHHHHHHh
Q 002273 837 NLRMSLRDLM 846 (944)
Q Consensus 837 ~~r~~~~~~~ 846 (944)
.+++.+++..
T Consensus 347 ~~~~~~~~~~ 356 (380)
T PRK00025 347 ALLEGFTELH 356 (380)
T ss_pred HHHHHHHHHH
Confidence 9999875443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00077 Score=73.60 Aligned_cols=376 Identities=14% Similarity=0.063 Sum_probs=231.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
++-++.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677899999999999999887766 9999999999999999999999999999999999999999999999864332 22
Q ss_pred HHhHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHh---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 002273 152 AAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALK---IDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (944)
Q Consensus 152 ~~~~la~~~~~lg~~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (944)
.|. +| +-.+-...++...+.. .|+-++. .++.....|...+..+. .+.+.+.-.+.|+
T Consensus 88 LW~----lY--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWK----LY--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHH----HH--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 221 11 1122223344333333 2333332 35666666666555432 3346667778888
Q ss_pred HHHHhCCCCHHH-HH-------------HHHHHHHHcCCHHHHHHHHHHHHHhC-------CC----c-HHH--HHHHHH
Q 002273 216 KAALERPMYAEA-YC-------------NMGVIYKNRGDLESAIACYERCLAVS-------PN----F-EIA--KNNMAI 267 (944)
Q Consensus 216 ~al~~~p~~~~~-~~-------------~la~~~~~~g~~~~A~~~~~~al~~~-------p~----~-~~~--~~~la~ 267 (944)
+++..--.+.+- |. ..-.+-.....|..|...+++....- |. . ... ...+-.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 887643232221 11 11112223334555555555544331 11 0 000 000000
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGD--INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK------- 338 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------- 338 (944)
-+++..+ .+ .+.. ..+. -....-.|++++..-+-.+++|+..+..+...++
T Consensus 242 n~I~wEk------------sN-pL~t-------~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d 301 (656)
T KOG1914|consen 242 NWIKWEK------------SN-PLRT-------LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGD 301 (656)
T ss_pred HHHHHHh------------cC-Cccc-------ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcc
Confidence 0111000 00 0000 0011 0233345677777777788888877776666665
Q ss_pred -------hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCC
Q 002273 339 -------FDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGK 406 (944)
Q Consensus 339 -------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 406 (944)
.+++..+|++++..- ..+...++.++..-...- +++.....+++++.+...++ -++..+-..-.+..=
T Consensus 302 ~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 302 VPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 678888999888753 334455555555443333 37778888888887754433 356666666667777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCC
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 475 (944)
.+.|...|.++-+..-....++..-|.+ |...++.+-|...|+-.++..++.+.-....+..+.++.+.
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 8899999999987654433444443333 56789999999999999999999988777666666666543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-05 Score=78.91 Aligned_cols=184 Identities=16% Similarity=0.095 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.+..++..|...++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++++ .
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----D 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----h
Confidence 47789999999999999999999999999988765 4789999999999999999999999999999998876 3
Q ss_pred HHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (944)
Q Consensus 158 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (944)
.+++..|.++... .-..+|+..|++.++..|++.-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3456666654432 22356777777777777775332211111 0111111 122335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
.+|..|.+.|.+..|+..++.+++..|+.. +++..+..++..+|....++......
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 678999999999999999999999987754 56667778888888887666554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=94.47 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=108.9
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002273 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 297 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 376 (944)
.++...++++.|+..++++.+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3455678899999999999988865 6667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 377 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417 (944)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 417 (944)
+++.+++.+..|++...|+.|+.+|..+|++++|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999877754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0027 Score=68.48 Aligned_cols=371 Identities=12% Similarity=0.037 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
..++..+|..+...| +..+++++++..+...|.+ +.....+|.++ ....+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356778888888888 8999999999998877654 34566777654 45789999999999998776554444344
Q ss_pred HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 002273 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AE 226 (944)
Q Consensus 156 la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 226 (944)
.-..+..++.++.... .+..+...+.+++++....+ ...+.|++++.-..++..|++.+.-..+....- ..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4445666777777766 88999999999999976654 456788999999999999999854332221111 12
Q ss_pred HHHHH--HHHHHHcCCH---HHHHHHHHHHHHhCCCcHHH-------HHHHHHHH-HHhhhhhhhhHHHHH----hhc-C
Q 002273 227 AYCNM--GVIYKNRGDL---ESAIACYERCLAVSPNFEIA-------KNNMAIAL-TDLGTKTYGRALLLF----RLN-G 288 (944)
Q Consensus 227 ~~~~l--a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~la~~l-~~~~~~~~~~a~~~~----~~~-~ 288 (944)
+.+.+ +.++....+. ..+.....+..+....++.- +..+..++ ...|+....+..... ... .
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 22222 2333333333 34444444444433333211 11222222 222332221111111 000 0
Q ss_pred CC--------CCc---hhHH-----------------HhhhcCCHHHHHHHHHHHHHhCCC------CH--------HHH
Q 002273 289 SN--------FQS---PFFE-----------------LVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 326 (944)
Q Consensus 289 ~~--------~~~---~~~~-----------------l~~~~~~~~~A~~~~~~al~~~p~------~~--------~~~ 326 (944)
.. +.+ .++. --...|-+++|.++-++++....+ .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 00 000 0010 011357788888888888765221 11 234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-C--HHH
Q 002273 327 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-F--SQS 393 (944)
Q Consensus 327 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~ 393 (944)
-.+..+-.-.|++.+|++....+.+. .|. .+.+.+.+|......+.++.|...|..|.++... + ..+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45566677789999999888877765 343 2567778888888899999999999999887543 2 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
..++|..|...|+-+.-.+.++ .+.|.+ ..+++..|.....++++.||....++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 6788999999887554433333 334442 4577888889999999999999999999986
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-06 Score=77.48 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (944)
.++..++..|...++.|+|.+|++.|+.+....|. ...+.+.++.+|++.+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 47889999999999999999999999999999886 468999999999999999999999999999999875 578
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCChhH
Q 002273 120 THCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 120 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 152 (944)
+..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999998876 889999999999999997654
|
|
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=100.28 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=92.5
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHH-----------------hHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCc
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 743 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~r 743 (944)
++++...+ ..|..+.++++...+. ...|+.+|+++|.| +.++.+++.++++|++ +
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~- 287 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR-H- 287 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-c-
Confidence 34444454 4788888888877664 23589999999877 4678899999999994 4
Q ss_pred EEEcc-CccCcHHHHHhcccccEEecCCC----CCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccccC
Q 002273 744 VDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK 816 (944)
Q Consensus 744 v~~~~-~~~~~~~~~~~~~~~Di~Ld~~~----~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~~ 816 (944)
|+|.+ .++ .++....|..+||++-+.+ .+-+++.+|||+||+|||+ +++|. -++.. |-..++..
T Consensus 288 v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa-------~~~gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 288 VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------VSYSCIGELVKD-GKNGLLFS 358 (371)
T ss_pred eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE-------ecCCChHHHccC-CCCeEEEC
Confidence 77765 465 6888999999999984321 3458899999999999998 44431 12222 44455566
Q ss_pred CHHHHHHHHHHH
Q 002273 817 NEDEYVQLALQL 828 (944)
Q Consensus 817 ~~~~y~~~a~~l 828 (944)
|.+++.+...+|
T Consensus 359 ~~~~la~~i~~l 370 (371)
T PLN02275 359 SSSELADQLLEL 370 (371)
T ss_pred CHHHHHHHHHHh
Confidence 777776655544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-05 Score=73.07 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
=+.+.......+.+...|. ..-.+.++..+.+.|++.+|...|++++. +...++..+..++...+..+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3445555555555665555 34567899999999999999999999886 467788899999999999999999999999
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 382 MALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 382 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+..+.+|. .++....+|++|...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999875 4678888999999999999999999999999987 77888889999999998888877665543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-07 Score=83.49 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=90.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
+-.-|.-++..|+|++|..-|..|+++.|..+ -.+.+.|.++.+++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33456677788888999988999988887654 3678889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|.++..+++|++.|++.++++|...+++..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998776643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0033 Score=67.43 Aligned_cols=137 Identities=11% Similarity=0.017 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
.+...|..+.+++++.+|.++|.++.+...+.+ +.+.++....+-+++.+.-...+...-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 355678999999999999999999988655442 344444455556677777777777666778888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHH------hHHHHHH--HHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAA------ECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
..++.+++.+|++.+......-......+ ......+ ...+.++...|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999998877655422221111 1111111 23577888999999999999988765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=76.32 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 398 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 398 (944)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45566666666666666666666666653332 345666666666666666666666666666555 455555566
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al 418 (944)
.++...|++++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666665554
|
|
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=96.25 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=100.2
Q ss_pred CCCCCCeEEEecCCC--CcCCHH-HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 677 ALTNGFITFGSFNNL--AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
+++++..+++++.+. .|.... +++++.++.. ++.++++.+++ ...+.+++.++++|+ .++|.|. . .
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l-~~~v~~~-~---~ 242 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGI-EAIVTFI-D---E 242 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCc-eEEecCc-c---c
Confidence 455566667776543 333333 2355555443 23444443332 123677777888888 4566665 1 2
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCccc--ccchhHHHhhcCCccccc-C--CHHHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 828 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~--~r~~~~~l~~~gl~~~v~-~--~~~~y~~~a~~l 828 (944)
+....|..||+++-+ +|++|++|||.+|+|||+.+-.... .+..+.++...|..-++. . +++++.+....|
T Consensus 243 -~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 -NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred -CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 567778889999853 4678899999999999986422111 222344666656555553 2 499999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 002273 829 ASDVTALANLRMSLRDLM 846 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~ 846 (944)
..|++.++++++..++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999998887654
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.4e-06 Score=83.85 Aligned_cols=271 Identities=16% Similarity=0.197 Sum_probs=177.5
Q ss_pred HHHHhHhCCccEEEecCCCCCCCchhhhc-cCCcceeeecccCCCCCC-------------C------------------
Q 002273 581 VAAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTG-------------L------------------ 628 (944)
Q Consensus 581 ~a~~i~~d~idilvdl~g~t~~~~~~~~a-~r~ApvQ~~~~G~p~t~g-------------~------------------ 628 (944)
.-+.|-.--+||-||.+|+.. ..++|. +|--|| ++|.-||.-+- +
T Consensus 142 ~~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 142 AFEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 345666778999999999986 567776 454554 55666774321 1
Q ss_pred --CCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCeEEEecC--CCCcCCHHHHHHHH
Q 002273 629 --PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWA 703 (944)
Q Consensus 629 --~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~--~~~K~~~~~~~~~~ 703 (944)
...|++++.. .=-..+--.+|.--.|.+.|.|.... ......+ ..+.-++.-+.. |+.|.|+ ++++++
T Consensus 219 ~G~~ad~vm~Ns-----sWT~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~A 291 (465)
T KOG1387|consen 219 AGSKADIVMTNS-----SWTNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFA 291 (465)
T ss_pred ccccceEEEecc-----hhhHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHH
Confidence 1245554431 10111222344443444455554321 1111111 122233344444 8899999 899888
Q ss_pred HHHhHcCC------ceEEEecCCC--CCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC-CCCC
Q 002273 704 RILCAVPN------SRLVVKCKPF--CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAG 774 (944)
Q Consensus 704 ~il~~~p~------~~l~~~~~~~--~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~~~ 774 (944)
--+.+.|. ..|.++|.-. .+......|+.+++.+.|+ +.|.|.-.+| .++....++-|-+.+.+- -...
T Consensus 292 l~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHF 369 (465)
T KOG1387|consen 292 LYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHF 369 (465)
T ss_pred HHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhc
Confidence 77766655 7788886422 2344567888999999995 6799998888 799999999999999998 4588
Q ss_pred cccHHHhhhcC-CcEEecCCCcccccchhHHHhhcCC-cccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCC
Q 002273 775 TTTTCESLYMG-VPCVTMAGSVHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPV 851 (944)
Q Consensus 775 ~~t~~eal~~g-vPvvt~~g~~~~~r~~~~~l~~~gl-~~~v~~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~ 851 (944)
|.+.+|+|++| +|||--.|.....=|.- -.|- ..+.+.|.+||++.-+.... |.+.+..+|...|..+ ..
T Consensus 370 GIsVVEyMAAGlIpi~h~SgGP~lDIV~~----~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~---~R 442 (465)
T KOG1387|consen 370 GISVVEYMAAGLIPIVHNSGGPLLDIVTP----WDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSL---AR 442 (465)
T ss_pred chhHHHHHhcCceEEEeCCCCCceeeeec----cCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HH
Confidence 99999999999 56765554433222210 1122 35779999999998887766 6666888888888775 45
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 002273 852 CDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 852 ~~~~~~~~~~e~~~~~~~~ 870 (944)
|....|-++++..++.+.+
T Consensus 443 FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 FGELKFDKDWENPICKLLE 461 (465)
T ss_pred hhHHHHHHhHhHHHHHhhc
Confidence 8888999999988877654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=81.22 Aligned_cols=106 Identities=24% Similarity=0.241 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
..+-.-|..++.+|+|++|..-|..+|+..|.- ...|.+.|.++++++.++.|++.+.++++++|.+..++...+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 345556889999999999999999999999863 457788999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
.+|.++.++++|++.|.++++.+|....+..
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999999999766543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-07 Score=73.82 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=56.0
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3577888889999999888888888888888999888899999998888888888888777776664
|
... |
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-06 Score=94.82 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=103.7
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.+.+++|.+++.. |... ++..++.+..|+..|+|+|.+-.. ..... + .. .++|.|+|.++ +++...
T Consensus 203 ~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~-~~~~~----~--~~--~~nV~~~G~~~-~~~l~~ 269 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVS-IDPSA----L--LR--LPNVHYLGPKP-YKELPA 269 (373)
T ss_pred CCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCc-cChhH----h--cc--CCCEEEeCCCC-HHHHHH
Confidence 3455677777664 4443 455667778899999999865111 01111 1 11 47899999987 688999
Q ss_pred hcccccEEecCCCC------CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHH-hcC
Q 002273 759 AYSLMDISLDTFPY------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL-ASD 831 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~------~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l-~~d 831 (944)
.++.+||+|-|+.. +.++.++|+|+||+|||+.. ++ .+....+..-+++.|.+++++...+. ..+
T Consensus 270 ~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~-------~~-~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 270 YLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP-------LP-EVRRYEDEVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred HHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC-------cH-HHHhhcCcEEEeCCCHHHHHHHHHHHHhcC
Confidence 99999999988743 23567999999999999843 32 22232232234567899999999884 444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
...+...+ +. +.+. ++++..+..+++..+
T Consensus 342 ~~~~~~~~---~~-~~~~--~sW~~~a~~~~~~l~ 370 (373)
T cd04950 342 GPARERRR---LR-LAAQ--NSWDARAAEMLEALQ 370 (373)
T ss_pred CchHHHHH---HH-HHHH--CCHHHHHHHHHHHHH
Confidence 33222211 11 3323 789999998886554
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-06 Score=103.57 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=123.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCCH-HHHHHHHHHHHHc--------CC-CCCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GL-ESLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~-~~~~~~~~~~~~~--------gi-~~~rv 744 (944)
+..++.++.|+ .|..+..++++.++++..|+ .+|++++.|..+. +..+.+++.+.+. |. +..-|
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv 343 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPI 343 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 44567777766 89999999999999999996 5788876443221 2333444444332 22 11124
Q ss_pred -EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhc-----CCcEEecCCCcccccchhH-HHhhcCCcccc--
Q 002273 745 -DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI-- 814 (944)
Q Consensus 745 -~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v-- 814 (944)
.|.+.++ ..+..+.|+.+||+|-|+-+ +-+.+++|||+| |+|||+ ...|++ -|. | .++
T Consensus 344 ~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls-------~~~G~~~~l~--~--~llv~ 411 (726)
T PRK14501 344 HYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS-------EMAGAAAELA--E--ALLVN 411 (726)
T ss_pred EEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe-------cccchhHHhC--c--CeEEC
Confidence 4556665 78999999999999999977 669999999999 556775 322311 111 1 222
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002273 815 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873 (944)
Q Consensus 815 ~~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 873 (944)
..|.++..+...++.+++ +.+....+++++++. -||+..+++.+.+.|+.+|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 368899988888888754 444544456777653 48999999999999999997654
|
|
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-07 Score=99.38 Aligned_cols=250 Identities=17% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCC-chhhhccC--------CcceeeecccCCCCCCCCCccEEEecCCCCCccccccc
Q 002273 579 KKVAAMVREDKIDILVELTGHTANN-KLGMMACQ--------PAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH 649 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~-~~~~~a~r--------~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~ 649 (944)
.++.+.|++.++|++|=.++ .+.+ ++...+.+ -+|-|-+|-|.-+..-....|.+++-- |....+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~----~~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL----PFEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC----CCcHHHH
Confidence 47888999999999987765 4333 33222211 122222232221112234455554321 2222333
Q ss_pred cc---ceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEecC--CC---CcCCHHHHHHHHHHHhHcCCceEEEecC
Q 002273 650 VE---ELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 719 (944)
Q Consensus 650 ~e---~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~ 719 (944)
.+ +.....+......+. +.....+...+++.+..+++.+. +. .|+.+.++++...+.+..|+.++++...
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 22 233333221110010 00001112235555554555442 33 5688999999999988899988866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCccccc
Q 002273 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 799 (944)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r 799 (944)
+. .....+.+..+..|. ..+|.+.+. +....|..+|+++-+. |++|+|++.+|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~-~~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGP-DLQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCC-CCcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 233445555556666 457766543 2234778899999665 7788899999999887643333333
Q ss_pred chhHHH-------------hhcCCccccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHh
Q 002273 800 VGVSLL-------------TKVGLKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 846 (944)
Q Consensus 800 ~~~~~l-------------~~~gl~~~v~--~~~~~y~~~a~~l~~d~----~~~~~~r~~~~~~~ 846 (944)
..+..+ ..-..+|++- -+++...+...+|..|+ +.++.+++.+++.+
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 322221 1222356663 36788899999999999 99999999887764
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0001 Score=78.96 Aligned_cols=154 Identities=15% Similarity=0.087 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCh-hHHhHHHHHHH
Q 002273 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA-LSADPSYK-PAAECLAIVLT 161 (944)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~-~~~~~la~~~~ 161 (944)
+.......+.+..+...+....+.+.....+.+.+++..+..++..|++.+|.+.+... +...+... .........+.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 33445556677777777777777777777788999999999999999999999887653 22222211 11112233467
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKI------------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
++|.++++.+.|.-+..+|.++++. .....++.|+.|..|...|+.-.|.++|.++......
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999962 1124678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 002273 224 YAEAYCNMGVIYKN 237 (944)
Q Consensus 224 ~~~~~~~la~~~~~ 237 (944)
++..|..++.+...
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999998765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.7e-07 Score=95.94 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a---~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+|+++..++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777777777777777777777777777777777644 777777777777777777777777776
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=5e-06 Score=74.96 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 431 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~a~~~l 431 (944)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 478899999999999999999999999975544 468999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~ 453 (944)
+.++...|+.++|++.+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.5e-06 Score=85.56 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=77.8
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccc
Q 002273 684 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 763 (944)
Q Consensus 684 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 763 (944)
.+|.++. .|..+.+++++.++.+..|+.++++.|.+.. ...........+. .++|.+.+..+..++....+..+
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGPE----REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC----hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcC
Confidence 4666554 5999999999999999999999999986532 2222222456666 58999999875344555555569
Q ss_pred cEEecCCCC-CCcccHHHhhhcCCcEEecC
Q 002273 764 DISLDTFPY-AGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 764 Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~ 792 (944)
||+|-|... +.+++.+|||+||+|||+-.
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATD 212 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcC
Confidence 999988855 66999999999999999933
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.9e-06 Score=83.61 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=79.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 433 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~la~ 433 (944)
.++.|.-++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+. +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666666777777777777777777777765 4677888888888888888888888887776654 677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
+..++|+.++|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887766554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=71.45 Aligned_cols=58 Identities=28% Similarity=0.440 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a 427 (944)
.|++++|++.|+++++.+|++..+++.+|.+|.+.|++++|...+++++..+|+++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3344444444444444444444444444444444444444444444444444443333
|
... |
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=96.65 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=127.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce----EEEecCCC-CCHHHHHHHHHHHHHcC--CCC--Cc-----E
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LES--LR-----V 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~~~~-~~~~~~~~~~~~~~~~g--i~~--~r-----v 744 (944)
+..++.+..++ .|..+..+.++.++|+..|+.+ |++++.+. .+.+..+.+++.+++++ |.. .. |
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv 357 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI 357 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence 33456666755 8999999999999999999864 34344332 23345566777777664 421 12 3
Q ss_pred EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002273 745 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 817 (944)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~ 817 (944)
+++...-..++..+.|+.+||||-|+-+ |-+.+.+|||+||+| +|. |+++++-- .+|-..++ ..|
T Consensus 358 ~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~~-~l~~~allVnP~D 429 (797)
T PLN03063 358 HHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAGQ-SLGAGALLVNPWN 429 (797)
T ss_pred EEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCchh-hhcCCeEEECCCC
Confidence 3333322368999999999999999987 779999999999998 555 66552111 12333333 468
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 818 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 818 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
.++..+...++.+ ++++++...+++++.+. -+|...|++.+.+.+...|...
T Consensus 430 ~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~---~~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 430 ITEVSSAIKEALNMSDEERETRHRHNFQYVK---THSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---hCCHHHHHHHHHHHHHHHhhhh
Confidence 8998888888888 77777777777777753 3689999999999999988643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.8e-05 Score=80.63 Aligned_cols=104 Identities=26% Similarity=0.351 Sum_probs=92.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~ 442 (944)
|..+...|+...|++++..|+...|.... ...+||.++.+.|....|-..+.+++.+....+-.++.+|++|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33344589999999999999999987654 67899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 443 LAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 443 eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
.|++.|++|++++|+++.....+.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999887766543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=69.81 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=53.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
..+++.+++|++|+++++++++.+|+++..+..+|.++...|++++|+..++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888887776655443
|
|
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=88.33 Aligned_cols=182 Identities=18% Similarity=0.137 Sum_probs=129.5
Q ss_pred CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC-----CceEEEecC-CCC-----CHHHHHHHHHHHHHcCCCC
Q 002273 675 TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP-----NSRLVVKCK-PFC-----CDSVRHRFLSTLEQLGLES 741 (944)
Q Consensus 675 ~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p-----~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~gi~~ 741 (944)
..+..+..+.|.++|+. -|-..-.+..+.......| .-++.+.+. |.. .-..-..+++.+++.++..
T Consensus 266 ~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g 345 (495)
T KOG0853|consen 266 YRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLG 345 (495)
T ss_pred eeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccC
Confidence 33456656779999954 5666666667776666664 445555542 121 1223467888899999988
Q ss_pred CcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEec-CCCcccccchhHHHhhcCCcc-cccCCH
Q 002273 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKH-LIAKNE 818 (944)
Q Consensus 742 ~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~~~gl~~-~v~~~~ 818 (944)
+.|.|++... +.+-..++..+.+.+-+... ..|.|++|||++|+|||+. .|.+.-.-+. |... +|..+.
T Consensus 346 ~~v~~~~s~~-~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~ 417 (495)
T KOG0853|consen 346 QFVWFLPSTT-RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQ 417 (495)
T ss_pred ceEEEecCCc-hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCch
Confidence 8999988876 44556677778888888876 9999999999999999864 3443322221 3333 334455
Q ss_pred H---HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 819 D---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 819 ~---~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+ ...+..++|.+||+.+.+++...++++.+. |.++.|..++.....
T Consensus 418 e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 418 EAVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhH
Confidence 5 589999999999999999999999999755 888888777777665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-06 Score=69.55 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
.+|...+++++|++++++++..+|+++..+..+|.++..+|++++|.+.|+++++..|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344555555555555555555555555555555555555555555555555555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-05 Score=71.90 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLG 432 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~la 432 (944)
.++.-|...++.|+|++|++.|+.+....|.. ..+.+.++.+|++.+++++|+..+++.++++|++ ..+++..|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444444444444444444444444443332 2344444444444444444444444444444443 23444444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhhCCCChhhh
Q 002273 433 VLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 433 ~~~~~~g~---------------~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.++..+.. ..+|...|++.++..|++..+.
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 44444433 6789999999999999887553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00057 Score=66.75 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCCHHHH
Q 002273 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQ-NACAHTHCGILYKDEGRLVEA 135 (944)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A 135 (944)
++|++|.++|.++- ..|....+++.|=..|.++-+.. .+ ....|...+.+|. ..+.++|
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 46777777777652 33333444444444444443321 11 2234444455554 4488888
Q ss_pred HHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHH
Q 002273 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYD 208 (944)
Q Consensus 136 ~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 208 (944)
+.++++++++..+.... ..-+.-+..+|.+|... .++++|+.+|+++-+..... ...+...+..-..+++|.
T Consensus 93 v~cL~~aieIyt~~Grf-~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRF-TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888876654332 22244456677777665 89999999999988764332 234566677778899999
Q ss_pred HHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 209 TALGCYEKAALERPMYA-------EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+|+..|+++....-++. ..++.-|.|++-..+.-.+...+++..+++|......
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 99999999887654432 3456678888888999999999999999999876543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00045 Score=68.54 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMAL 384 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 384 (944)
+..++.+++-+ ..+.+.+..++...|+|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|++.-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455555443 3567888999999999999999999999988 6678889999999999999999999999654
Q ss_pred hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 385 SIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 385 ~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|.|+.-.|+..+|++..+.+++..|..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 432 22345778889999999999999999999999999999999999999999999999999999999999975
Q ss_pred h
Q 002273 459 R 459 (944)
Q Consensus 459 ~ 459 (944)
.
T Consensus 320 ~ 320 (366)
T KOG2796|consen 320 Y 320 (366)
T ss_pred c
Confidence 4
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0011 Score=65.93 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------------A-CAHTHCGILYKDEGRLVEAAESYHK 141 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (944)
+...|...-.++.+....++|...+...-+++..+ | ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44566666677777777777776666554443211 1 1223335555566666666555444
Q ss_pred HHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (944)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (944)
....- ...-.........+..++.+++-+. .+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 148 L~~~V--------------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVV--------------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH--------------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 33211 1111112222233555666655443 466777778888888888888888888877
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhh
Q 002273 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300 (944)
Q Consensus 222 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 300 (944)
|..+.....+|.+.++.|+.+.|..+|++.-+....-
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------------------------------------ 245 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------------------------------------ 245 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------------------------------------
Confidence 5577777888888888888888888887654321110
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002273 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380 (944)
Q Consensus 301 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 380 (944)
..-....-+..+.+.++...+++.+|...+.+++..+|.++.+.++.|.|+...|+...|++..
T Consensus 246 ----------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 246 ----------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred ----------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 0001122345566667777777777777777777777777777777777777777777788777
Q ss_pred HHHHhhCCCC
Q 002273 381 QMALSIKPNF 390 (944)
Q Consensus 381 ~~al~~~p~~ 390 (944)
+.+++..|..
T Consensus 310 e~~~~~~P~~ 319 (366)
T KOG2796|consen 310 EAMVQQDPRH 319 (366)
T ss_pred HHHhccCCcc
Confidence 7777777753
|
|
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-06 Score=94.32 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=121.5
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCC------------------
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE------------------ 740 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~------------------ 740 (944)
+.-.|.++.=.=+.|-....+.++.+++..+|++.|.+.|.+.. ......+++..++.++.
T Consensus 319 ~~~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 34445444112278889999999999999999999999876522 23345555555555553
Q ss_pred ----------CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002273 741 ----------SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 810 (944)
Q Consensus 741 ----------~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl 810 (944)
.+||.|.+... ..+....|..+.|++|+....|-.|.+||+..|||+|-.....+ -.-|-
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqInyg~~~~---------V~d~~ 467 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETDY---------VEHNK 467 (519)
T ss_pred cccchhhcccccEEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeecCCcee---------eEcCC
Confidence 17999998754 35899999999999999977553499999999999992211111 12277
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 811 KHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 811 ~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.+.|..|.++..+.++.+..|+..+.++....-+.+ ..|+.......++
T Consensus 468 NG~li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~---~~yS~~~i~~kW~ 516 (519)
T TIGR03713 468 NGYIIDDISELLKALDYYLDNLKNWNYSLAYSIKLI---DDYSSENIIERLN 516 (519)
T ss_pred CcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 778889999999999999999988877777665553 3355555444433
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00042 Score=67.68 Aligned_cols=141 Identities=14% Similarity=0.174 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCC------H
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------S 391 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~ 391 (944)
.|...+.+|.+ .+.++|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... -
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 34444444443 37777777777777764433 33455788888765 89999999999998775432 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
..+...+..-...++|.+|+..|++.....-++. .-++.-|.|+....+.-.+...+++..+++|...+.+.-
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 3566677777889999999999999887654442 334566778888889999999999999999998877655
Q ss_pred HH
Q 002273 465 RL 466 (944)
Q Consensus 465 ~~ 466 (944)
.+
T Consensus 235 kf 236 (288)
T KOG1586|consen 235 KF 236 (288)
T ss_pred HH
Confidence 43
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00025 Score=66.68 Aligned_cols=148 Identities=17% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHHHHHHHHHHcCChH
Q 002273 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (944)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 174 (944)
=+.+.......+.+...|.. .-.+.||..+.+.|++.+|...|++++.- ...+.. ++..+++.....+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-------~lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-------MLLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-------HHHHHHHHHHhhccHH
Confidence 34444444444444444443 34566777777777777777777777653 222222 3555666666677777
Q ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 175 DGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 175 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
.|...+++..+.+|. .++....+|..|...|++.+|...|+.++...|+ +.+....+..+.++|+..+|...+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777777777664 4566677777777777777777777777777765 5666667777777777776665554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-05 Score=67.29 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=74.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR 436 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~la~~~~ 436 (944)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++-+++++++.... ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456666777888888888888888888888888888888888888888888888888875433 356778888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 002273 437 DAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+|+-+.|...|+.+-++-..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888888888888777554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.8e-05 Score=84.45 Aligned_cols=74 Identities=28% Similarity=0.315 Sum_probs=66.9
Q ss_pred cccCCCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002273 38 AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKL 111 (944)
Q Consensus 38 ~~~~~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (944)
..+...+|..+..++.+|..|+..|+|++|+..|+++++.+|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 65 ~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 65 KDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44456788899999999999999999999999999999999998854 999999999999999999999999987
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0035 Score=70.36 Aligned_cols=47 Identities=19% Similarity=0.037 Sum_probs=33.6
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002273 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (944)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (944)
...|+|+.|...++. ++..|+....|..++...+..|+.--|..+|.
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 567889988877765 56677777777777777777776666655554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0024 Score=71.63 Aligned_cols=318 Identities=15% Similarity=0.129 Sum_probs=172.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH------Hhc----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHH
Q 002273 85 HIGKGICLQMQNMGRLAFDSFSEA------VKL----DPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (944)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (944)
|-.-|..+.+..++++|+++|++. +++ .|... ..-...|.-+...|+++.|+..|-++-.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 334455555666666666666542 222 12211 1222335556667777777777755421
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (944)
Q Consensus 154 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (944)
+..-........++.+|+..++...... .....|-.++.-|...|+|+.|.++|.++- ....-..
T Consensus 735 ------~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 735 ------LIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred ------HHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 1222223334567777777776543322 123345567888888999999988888752 2233445
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHH
Q 002273 234 IYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYY 312 (944)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 312 (944)
.|-+.|++++|.+.-+++.. |... ..+...+.-+-..|+..+++. +|...|..++|+..|
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeq-----------------lyiti~~p~~aiqmy 860 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQ-----------------LYITIGEPDKAIQMY 860 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhh-----------------eeEEccCchHHHHHH
Confidence 67788888888877766532 3322 233334444444444322221 133334444555544
Q ss_pred HHH------H----HhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 313 KKA------L----YYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 313 ~~a------l----~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
++. + +..++. .+....+|.-+...|+...|...|-++-.. ..-...|...+-+++|...-+
T Consensus 861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHh
Confidence 432 1 123332 357788888999999999998888776432 122233334444444433221
Q ss_pred HHHhhCCCCHH--HHHH---------HHHHHHHcCCHHHHHH-------------HHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 382 MALSIKPNFSQ--SLNN---------LGVVYTVQGKMDAAAE-------------MIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 382 ~al~~~p~~~~--~~~~---------la~~~~~~g~~~~A~~-------------~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
.....+.. +.+. -..++.+.|-.++|+. .-+-+. ...-++++..++..+..
T Consensus 933 ---tegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~led 1007 (1636)
T KOG3616|consen 933 ---TEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLED 1007 (1636)
T ss_pred ---ccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhh
Confidence 11111111 0000 1122333444444443 222222 23346788999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q 002273 438 AGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 438 ~g~~~eA~~~~~~al~l~P~~ 458 (944)
.|++++|-+.|-.+++++.-+
T Consensus 1008 egk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhhhhHhhHHHhhccccc
Confidence 999999999999999998655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.1e-06 Score=70.20 Aligned_cols=64 Identities=36% Similarity=0.540 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---N----PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~----p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
..++.++|.+|..+|++++|+++|++++++ . |....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555666666666666666666666544 1 112445666677777777777777777766654
|
... |
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=89.68 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=73.8
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCC----cccc--------cCCHHHH
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDEY 821 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl----~~~v--------~~~~~~y 821 (944)
++-..++.||+++=|+-| +.|.|.+|||+||+||||-....|. ..+-..+|- .-+| ..+.++.
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~----~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG----CFMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchh----hhhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 466678889999988877 6699999999999999994333221 011111121 1122 3467777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 822 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 822 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.+...++++. +.++.+.++-+.. ..+..|+++.++..+.+||..+.+
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~-r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTE-RLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhh
Confidence 7777777754 4555555544321 125779999999999999988765
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00018 Score=79.38 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=123.9
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
+.+.++++ ..|..+.++++...+....|+..+++.|.+... ...+...+...+. .+.|.|.|..+ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGL-EDNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCC-CCcEEEecccC-HHHHHHHH
Confidence 34444443 368888999999998888887788888765322 3445556666676 57899988876 45667778
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC-CHHHHHHHHHHHhcCHHHHH
Q 002273 761 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 761 ~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~-~~~~y~~~a~~l~~d~~~~~ 836 (944)
..+|+++-|..+ +.|.+++|||++|+|||+ ++++ ..++..-+..-++.. +.++.......+..+.+.++
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~-------~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 347 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIA-------SDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELRE 347 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEE-------CCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHH
Confidence 889999999876 778889999999999998 4444 112222211113333 58999999999999986677
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.+....++... ..|++..++..+++.|.....
T Consensus 348 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 348 ELGEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 77764545443 458999999988888876543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.4e-06 Score=68.28 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+-..++..+|.+|..+|++++|+.+|++++++.....+.....+.++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456889999999999999999999999998743333344456778888888888888888888888888764
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.9e-05 Score=72.41 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 415 (944)
++.|.+.++.....+|.+++.+++.|..+..+.++ .++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 56667777777777777777777777666554322 11111 1233344444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 416 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 416 ~al~~~p~~~~a~~~la~~~~~~g-----------~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
+++.++|+..++++.+|.+|...+ .+++|.++|++|...+|++...+..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 444455555555555554444333 37789999999999999987555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00025 Score=62.45 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCN 230 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 230 (944)
.....+...|..+...|+.+.|++.|.+++.+-|..+.+|.+.+..+.-+|+.++|++.+++++++.... -.++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3344566678888899999999999999999999999999999999999999999999999999986543 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 231 MGVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
.|.+|..+|+-+.|..-|+.+-++...+.
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 99999999999999999999988866544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0017 Score=63.93 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+..|..-+..+...+++++|..++.++.+-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 334445555566666666666666666644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0023 Score=73.19 Aligned_cols=55 Identities=22% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHhc
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-------QMQNMGRLAFDSFSEAVKL 111 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~ 111 (944)
.|..++-++++++|.++++.. .+.++.-....|.+. +...+.++|.+.+.++.+.
T Consensus 2 ~a~~lflnn~~~eAe~~l~~~---~~~s~~h~lg~~~i~fl~A~ltfe~~~~~~A~~~l~~a~~~ 63 (468)
T PF10300_consen 2 KAIDLFLNNRFKEAEELLSPR---ADESPYHALGYGVIAFLKAMLTFEPEDIEEALEALKEAESL 63 (468)
T ss_pred hHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 366788899999999999854 223332222333322 3445677777777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-05 Score=71.15 Aligned_cols=93 Identities=26% Similarity=0.319 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-- 206 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 206 (944)
++.|.+.++.....+|.+.++....+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555554444444444443311 22356788899999999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHHhCCCC
Q 002273 207 ---------YDTALGCYEKAALERPMY 224 (944)
Q Consensus 207 ---------~~~A~~~~~~al~~~p~~ 224 (944)
|++|..+|+++...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555555555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.058 Score=60.69 Aligned_cols=124 Identities=11% Similarity=-0.026 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVY 401 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 401 (944)
...|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|..+.+...-+.+-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3467777777888899999999999998887788889999999999999999999888888877 466677888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
...|++..|...+++..+..|+..++-........++|+.+.+..
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 889999999999999998889988888888888888999888884
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.031 Score=65.62 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (944)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (944)
-+..+.|.++.+++ +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35666666665554 45667777777777777777777776543 455566666666777777777777766
Q ss_pred HHHHcCCCC-hhHHhHHHHH-------------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 141 KALSADPSY-KPAAECLAIV-------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 141 ~al~~~p~~-~~~~~~la~~-------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+-+..... .+.....|.+ ....|.-++..+.|+.|.-+|.. ..-|..|+..
T Consensus 1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 665432221 1110000100 23356666777777777776653 3456778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-----------C--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 201 YSELMQYDTALGCYEKAALER-----------P--------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~-----------p--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
+..+|+|..|....+++-... . -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 888999999988888763311 0 034456677888999999999999999999888
Q ss_pred CCcHHHHHHHHHHHHHhhhh
Q 002273 256 PNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 256 p~~~~~~~~la~~l~~~~~~ 275 (944)
..+...+..++.+|.+..-.
T Consensus 1310 RAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 87777788888888765443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.003 Score=72.34 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=117.0
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHY-ADA------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
.+.++..-.||-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.++++...+..|+..-.++.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34455666789999999999887632211 111 111111111 2446788999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRD 437 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~a~~~la~~~~~ 437 (944)
.|+++...|+.++|++.|++++...... .-.++.+++++..+.+|++|.+++.+..+.+.-. .-..+..|.++..
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999999999999999999888544332 2367889999999999999999999998876543 3345567888888
Q ss_pred cCCH-------HHHHHHHHHHHhh
Q 002273 438 AGSI-------SLAIDAYEQCLKI 454 (944)
Q Consensus 438 ~g~~-------~eA~~~~~~al~l 454 (944)
.|+. ++|.+.|+++-.+
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 9988 6667766666443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0017 Score=70.89 Aligned_cols=208 Identities=18% Similarity=0.059 Sum_probs=135.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------------
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------------------ 114 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------ 114 (944)
.......+..+.++-++..+++++.+|+.+.+|..++.-. .....+|.++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3444557789999999999999999999999999887642 23456677777776653110
Q ss_pred ---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 002273 115 ---N----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (944)
Q Consensus 115 ---~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (944)
+ ..+...+|.+..+.|+.++|++.++..++..|.... -.+..++..++...+.+.++...+.+.-+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-----l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-----LNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-----hhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 0 234566888888888888888888888887775322 224667777788888888888888775433
Q ss_pred CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH------HHHHHcCCHHHH
Q 002273 187 DPHYAPAYYNLGVVYSE-LMQ---------------YDTALGCYEKAALERPMYAEAYCNMG------VIYKNRGDLESA 244 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~la------~~~~~~g~~~~A 244 (944)
-|+.+...+..+.+-.+ .++ -..|++.+.++++.+|..+..+..+- .-+.+.|+ .||
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEA 404 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEA 404 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHH
Confidence 35556666655554332 111 13466788888888887766554332 12344554 677
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Q 002273 245 IACYERCLAVSPNFEIAKNNMAIA 268 (944)
Q Consensus 245 ~~~~~~al~~~p~~~~~~~~la~~ 268 (944)
+.+---.+..-.+...+...+...
T Consensus 405 iaYAf~hL~hWk~veGAL~lL~~t 428 (539)
T PF04184_consen 405 IAYAFFHLQHWKRVEGALNLLHCT 428 (539)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHH
Confidence 776666655544444444444333
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0014 Score=64.50 Aligned_cols=134 Identities=22% Similarity=0.178 Sum_probs=82.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002273 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 404 (944)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 404 (944)
..|.+.|..+.|-..++++-+. .+..+.++|+++|++++.+-... .+.+-..++++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 4556666666666666555433 23356677777777776653222 23555667778888
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChhhhhhHHHHhhhccC
Q 002273 405 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 474 (944)
Q Consensus 405 g~~~~A~~~l~~al~~------~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l----~P~~~~a~~~~~~~~~~~~~ 474 (944)
.++++|-..+.+-... .++....+.....+|.-..+|..|..+|+..-++ .|++..+..|++- ...+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---Hhcc
Confidence 8888877776665432 3444555666666777777888888888887665 3455555555433 3456
Q ss_pred CChHHHHH
Q 002273 475 GHDDKLFE 482 (944)
Q Consensus 475 ~~~~~~~~ 482 (944)
|+.++.-.
T Consensus 241 gD~E~~~k 248 (308)
T KOG1585|consen 241 GDIEEIKK 248 (308)
T ss_pred CCHHHHHH
Confidence 66665443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.11 Score=62.00 Aligned_cols=414 Identities=15% Similarity=0.073 Sum_probs=235.7
Q ss_pred CChHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---C
Q 002273 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--N----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (944)
Q Consensus 46 ~~~~~~~~~A~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (944)
.++...+++|.+++ ...++++|..++++++..... . ..+.+.++.++.+.+... |...+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 36778899999998 678999999999999876533 2 234556788888888777 99999999886443 2
Q ss_pred H-HHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCC--CChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 002273 116 A-CAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--- 187 (944)
Q Consensus 116 ~-~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 187 (944)
. ...+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++..+++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2 112222 2333334799999999999888753 33322 23334445566677787888888888774431
Q ss_pred ---CC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---H---hCC---C---C----------------------
Q 002273 188 ---PH----YAPAYYNLGV--VYSELMQYDTALGCYEKAA---L---ERP---M---Y---------------------- 224 (944)
Q Consensus 188 ---p~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~---~~p---~---~---------------------- 224 (944)
++ ...++..+-. ++...|+++.+...+++.- + ..+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 11 2334444333 3456677666666555442 2 111 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhhhhhhhh
Q 002273 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~l~~~~~~~~~~ 279 (944)
.-.+..-|......+..++|.++++++++.-.+.. ..+......+...
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~------- 365 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF------- 365 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH-------
Confidence 01233345566667777788888888876421111 0000000000000
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCChHHHHHHHH---
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--- 347 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--- 347 (944)
...-.....+++.++....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 366 --------------y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 366 --------------YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred --------------HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 00112345678888888887776542 22 36788999999999999999999998
Q ss_pred -----HHHhhCCCC---HHHHHHHHHHHHHCCCHHH----HHHHHHHHHhhCCCCHHHHHHHHH-----HHH--HcCCHH
Q 002273 348 -----LAFHFNPHC---AEACNNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGV-----VYT--VQGKMD 408 (944)
Q Consensus 348 -----~al~~~p~~---~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~-----~~~--~~g~~~ 408 (944)
.+....+.+ .-+..++..++...+.-.. +.+.+++.-....+.+..++..+. .+. ..-...
T Consensus 432 ~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n 511 (608)
T PF10345_consen 432 FLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSN 511 (608)
T ss_pred HhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccH
Confidence 333333333 2344556666665554333 334443322221122222222222 221 122334
Q ss_pred HHHHHHHHHHHhC-CC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hhhhhhH----HHHhhhccC
Q 002273 409 AAAEMIEKAIAAN-PT--Y----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINE 474 (944)
Q Consensus 409 ~A~~~l~~al~~~-p~--~----~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~---~~a~~~~----~~~~~~~~~ 474 (944)
++...+.++++.. .. + .-++..++..+. .|+..+..+...++....... ....+.. ++...+-..
T Consensus 512 e~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~ 590 (608)
T PF10345_consen 512 EAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQ 590 (608)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Confidence 7777777777654 11 1 234555666666 788888777777776654443 4433321 222335566
Q ss_pred CChHHHHHHHH
Q 002273 475 GHDDKLFEAHR 485 (944)
Q Consensus 475 ~~~~~~~~~~~ 485 (944)
|+.+++-+...
T Consensus 591 G~~~ka~~~~~ 601 (608)
T PF10345_consen 591 GDRDKAEEARQ 601 (608)
T ss_pred CcHHHHHHHHH
Confidence 77776554433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-05 Score=75.17 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....+-..|+.++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|...
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 002273 127 KDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~ 146 (944)
.....+++|+..++++..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.12 Score=61.76 Aligned_cols=316 Identities=14% Similarity=0.023 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC
Q 002273 98 GRLAFDSFSEAVKLDPQ----NACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (944)
Q Consensus 98 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 172 (944)
...|+.+++-+++..+- .+.+++.+|.+++ ...++++|..++++++.+...+ ......-.+...++.++.+.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhcCH
Confidence 35678888887752221 3467888998887 7899999999999998887552 2222223334455777877777
Q ss_pred hHHHHHHHHHHHhhCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCC
Q 002273 173 TQDGIQKYYEALKIDPH---Y-APAYYNL--GVVYSELMQYDTALGCYEKAALER--PMYAEA----YCNMGVIYKNRGD 240 (944)
Q Consensus 173 ~~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~ 240 (944)
.. |+..+++.++.... . ....+.+ ...+...+++..|++.++...... ..++.+ ....+.++...+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 76 99999999887444 1 2222222 223333479999999999998765 344432 2334566777788
Q ss_pred HHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 241 LESAIACYERCLAVSPN----------FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~----------~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
.+++++.++++...... ...++..+..+...+... +++.+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~----------------------------~~~~~~~ 246 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQG----------------------------DVKNSKQ 246 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcC----------------------------CHHHHHH
Confidence 88888888877443221 122333333333322221 1111111
Q ss_pred HH---HHHHHh---CC---------------------------------C---CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 311 YY---KKALYY---NW---------------------------------H---YADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 311 ~~---~~al~~---~p---------------------------------~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
.+ ++.++. .+ . ..-+|..-|......+..++|.+++++
T Consensus 247 ~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k 326 (608)
T PF10345_consen 247 KLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEK 326 (608)
T ss_pred HHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Confidence 11 111100 00 0 011233445566666777788888877
Q ss_pred HHhhC-------CCC-------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC------CHHH
Q 002273 349 AFHFN-------PHC-------------------AEACNNLGVIYKDRDNLDKAVECYQMALSIK---PN------FSQS 393 (944)
Q Consensus 349 al~~~-------p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~ 393 (944)
+++.- +.. ....+.++.+..-.+++.+|....+.+.+.. |. .+..
T Consensus 327 ~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (608)
T PF10345_consen 327 ALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLL 406 (608)
T ss_pred HHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHH
Confidence 77541 110 1234455666677899999998888777653 22 3667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIE--------KAIAANPTY---AEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~--------~al~~~p~~---~~a~~~la~~~~~~g~~~e 443 (944)
++..|..+...|+.+.|+.+|. .+....+.. .-+..++..++...+....
T Consensus 407 ~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 407 HYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 8888999999999999999998 333333332 2345667777776665443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=79.38 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=111.6
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
..|+|-||++...++++-++..+.-|...|...||....+... +...+.+.++....| +++.++.| +.+
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~~ 351 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QVK 351 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HHH
Confidence 4588999999999999999999999999999999987643111 112234444443333 56678887 555
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc-------CCHHHHHHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLAL 826 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~-------~~~~~y~~~a~ 826 (944)
.|.- ..+..|+ ..+|-+|++||+++|||+|++| ++.+ ..+.++...|+.--+. -+.++-.+...
T Consensus 352 IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~ 424 (472)
T PLN02670 352 ILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQG---LNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVR 424 (472)
T ss_pred HhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcchhccH---HHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHH
Confidence 5532 3344465 3588899999999999999998 4432 3344445556654432 25677777777
Q ss_pred HHhcCHHHHHHHHHH---HHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 827 QLASDVTALANLRMS---LRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 827 ~l~~d~~~~~~~r~~---~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
++..|++ -..+|++ +++.+... -.....++.+++.+..+
T Consensus 425 ~vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 425 LAMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HHhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 7776642 2233333 33444333 35778888888877654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.018 Score=67.55 Aligned_cols=230 Identities=25% Similarity=0.297 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHH
Q 002273 192 PAYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 263 (944)
Q Consensus 192 ~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 263 (944)
.+.+.+|.+|.+-. +++.|+.+|.++.+.. ++.+.+.+|.++.... ++..|.++|..+.+. .+..+.+
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence 34555555555422 4555666666655442 3445555555555543 445666666655432 3444555
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHH
Q 002273 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMA 342 (944)
Q Consensus 264 ~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A 342 (944)
.++.++..-. ....+...|..+++++.+.. .+.+...++..+... +.++.+
T Consensus 365 ~la~~y~~G~--------------------------gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 365 RLALCYELGL--------------------------GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred HHHHHHHhCC--------------------------CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 5555443221 11334566666666666655 233333333333222 555555
Q ss_pred HHHHHHHHhhCCCCHH----HHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHH
Q 002273 343 IVFYELAFHFNPHCAE----ACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAA 410 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~----~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A 410 (944)
...+....+..-+.+. .+......... ..+.+.+...+.++.. ..+..+...+|.+|+.- .+++.|
T Consensus 417 ~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a 494 (552)
T KOG1550|consen 417 LALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKA 494 (552)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHH
Confidence 5554444443222111 11111101111 1244555556655543 45677778888887654 458888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~---g~~~eA~~~~~~al~l~P~~ 458 (944)
...|.++.... ....+++|.++..- ..+..|..+|.++.+.+.+.
T Consensus 495 ~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 495 AAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 88888887776 78888888888642 12678888888888766543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.013 Score=68.79 Aligned_cols=176 Identities=23% Similarity=0.231 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG--- 130 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 130 (944)
..+|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887665 5788888999988754 5899999999998771 1125567888999988743
Q ss_pred --CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 002273 131 --RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-- 203 (944)
Q Consensus 131 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 203 (944)
++..|..+|.++-.....+ + .+.+|.++..-. ++..|.++|..+.+. .+..+.+.++.+|..
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~--a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD--A-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch--H-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCC
Confidence 6788999999988775443 2 445555555443 678899999888764 467888888888864
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 002273 204 --LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (944)
Q Consensus 204 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (944)
..+...|..+++++.+.. .+.+...++.++... +++..+...+......
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 347889999999998876 455556666555443 6676666665554443
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00097 Score=75.47 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=107.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.+..++|.+++......+..++...+.+...|--.++..+.+.. ...+ . .+ +++|.+.+.++ .. .
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~----~--~~-~~~v~~~~~~p-~~---~ 287 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADL----G--EL-PPNVEVRQWVP-QL---E 287 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHh----c--cC-CCCeEEeCCCC-HH---H
Confidence 34567788888877777777776677777666544555443311 1111 1 23 57888888876 33 4
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..+|+++- .+|..|++|||.+|+|+|.++...- ...-+..+...|....+.. +.++..+...++..|++.+
T Consensus 288 ll~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 288 ILKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred HHhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 4577999982 4666789999999999999885432 3334555667787765532 5678888888899998766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
+++ +.+++.+... ......+..+|+.+
T Consensus 364 ~~~-~~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 364 ERL-RKMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HHH-HHHHHHHHHc--CCHHHHHHHHHHhh
Confidence 665 3444554432 35666666666654
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.021 Score=60.88 Aligned_cols=131 Identities=21% Similarity=0.087 Sum_probs=103.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCChhHHhHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 002273 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DP---H------- 189 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~------- 189 (944)
..++|+++.|..++.|+-... ..++.....++.++++.|......+ ++++|..+++++++. .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999998766 6667777889999999999999999 999999999999887 21 1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1345677888888877654 455666666667788788876666666668899999999999887644
|
It is also involved in sporulation []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.11 Score=58.44 Aligned_cols=405 Identities=11% Similarity=-0.005 Sum_probs=244.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK-DEGRLVEAAESYHK 141 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 141 (944)
..+.+...|...|...|---..|...|..-.+.|..+.+.+.|++++.--|-+...|..+-.... ..|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33666777888888899888899999999999999999999999999988887777766544333 45677777788888
Q ss_pred HHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 002273 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (944)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~ 215 (944)
|......+-.. ...+-..-.....++++..-...|++.++.--.....++..=.-+.+. ...+++...-.
T Consensus 140 A~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 88766543322 111222223335677888888888888875333222222211111111 11222222211
Q ss_pred HHHHh--CCC---CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 002273 216 KAALE--RPM---YAEAYC-NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289 (944)
Q Consensus 216 ~al~~--~p~---~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~ 289 (944)
..... .+. ..+.+- .+-.+-...+.++++...+.+...+.. .++.........+.........+
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~----------~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHE----------KVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHH----------HHHHhhHhHHHHHHhhhhhcccc
Confidence 11110 000 000000 000000001112222222211111100 00000000000111111111111
Q ss_pred CCCc------------hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC
Q 002273 290 NFQS------------PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC 356 (944)
Q Consensus 290 ~~~~------------~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 356 (944)
.+.. .........|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|..
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 1111 12334556899999999999999888888999999999999999999999999888887 4667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNN 430 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~l~~al~~~p~~---~~a~~~ 430 (944)
+.+...-+.+....|++..|...+++..+..|+...+-..........|+.+.+.. ++.....-..+. ...+..
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK 445 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence 88888888999999999999999999998889998888888888889999988884 333322221111 233444
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHH
Q 002273 431 LGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 481 (944)
Q Consensus 431 la~~-~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (944)
.++. +.-.++.+.|...+.++++..|++...+..+.....+...+.....+
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~ 497 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLL 497 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhh
Confidence 4544 34467899999999999999999987776654433333334333333
|
|
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00023 Score=79.89 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=98.8
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------cEEEccCccCcHHHHHh
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQA 759 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~-------------rv~~~~~~~~~~~~~~~ 759 (944)
+.-|.++++..++.+. |+.++++...+. ...+.+.+.+.+.|+... .+.+.+. ..+....
T Consensus 221 ~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~ 293 (396)
T TIGR03492 221 RNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEI 293 (396)
T ss_pred ccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHH
Confidence 4445788887777655 777777654221 223445556666676422 2444443 3467788
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc----CCcccc-cCCHHHHHHHHHHHhcCHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHLI-AKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~----gl~~~v-~~~~~~y~~~a~~l~~d~~~ 834 (944)
|+.+|++|-. .||+|.|++.+|+|+|..++..+ ...+.++... |-...+ -.+.+...+...+|..|++.
T Consensus 294 l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 294 LHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred HHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 8999999955 55777999999999999996533 2345555542 433333 45678888889999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
+.++++..+.++.. -....+.++.++
T Consensus 368 ~~~~~~~~~~~lg~--~~a~~~ia~~i~ 393 (396)
T TIGR03492 368 LERCRRNGQERMGP--PGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHH
Confidence 88888655555431 123444444443
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0024 Score=69.74 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGV 433 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~a~~~la~ 433 (944)
..+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++..++.|.++...+.+.-+. -|+.+...+.-+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344556777777777777777777777776654 3457777777777777777777777775433 2455555555444
Q ss_pred HHHH-------------cC---CHHHHHHHHHHHHhhCCCChh
Q 002273 434 LYRD-------------AG---SISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 434 ~~~~-------------~g---~~~eA~~~~~~al~l~P~~~~ 460 (944)
+..+ .| .-..|.+...+|++.||.-+.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 3322 11 123477889999999998764
|
The molecular function of this protein is uncertain. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0035 Score=68.99 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=94.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
.|..+...|+...|++++..++...|... ....++|.++...|-.-.|-..+.+++.+....+-.++.+|..+..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34455667999999999999999988653 45778999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
+.|++.|++|++++|++++....|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999988777665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00046 Score=73.52 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566677777777789999999999987666678899999999777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 404 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~---~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.|+.+.|..+|++++..-+... .+|......-.+.|+.+...+.++++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866544 5788888888999999999999999999999843
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00067 Score=76.33 Aligned_cols=128 Identities=11% Similarity=0.129 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CC
Q 002273 696 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AG 774 (944)
Q Consensus 696 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~ 774 (944)
+..+..+.++.+++|+..|-| |.+. .+..+|.+. .+. ++-+.+-+.. +.+.-..|..||++||+... +.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~t---e~s~kL~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~ 360 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALT---EMSSKLMSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEI 360 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecC---cccHHHHHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccH
Confidence 899999999999999999999 3321 223566555 554 3444444433 35788999999999999988 55
Q ss_pred cccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc-cCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 775 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 775 ~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v-~~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
+.+..||+..|+|||+..-..+..... .-..++ ..+.++++++.+.+.+|++.++..-.
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~~~~~i-------~~g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~ 420 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAHNRDFI-------ASENIFEHNEVDQLISKLKDLLNDPNQFRELLE 420 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccCCcccc-------cCCceecCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999999999999966443322211 002233 46889999999999999975554433
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=73.82 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=110.0
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 678 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
..+..++|-++....=- .+++.+..+.+...|-.+++-.+. . +. ...++ ++.+...+.++ +.
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~-----~~------~~~~~-p~n~~v~~~~p----~~ 295 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A-----RD------TLVNV-PDNVIVADYVP----QL 295 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c-----cc------ccccC-CCceEEecCCC----HH
Confidence 34456677777655422 777777777777776554444432 1 10 12244 68888888876 35
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~~ 834 (944)
..+..+|+++ ..||++||+|||..|||+|.+|.. +-.-.-|.-+..+|.+..+- .+++.-.+...+..+|...
T Consensus 296 ~~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 296 ELLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred HHhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 5667799998 248888999999999999999976 22223566667889988775 5777777777888888766
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+++.+. +++.+... ...+..+..+|+..++
T Consensus 372 ~~~~~~-~~~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAER-LAEEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHH-HHHHhhhc--ccHHHHHHHHHHHHhc
Confidence 655443 44444322 3466688888876653
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00047 Score=67.69 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
...+.|++.|+...|+|-++++.....+..+|.+..+++..|.+....=+..+|...|.++|+++|.-..+...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999987655544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.11 Score=56.01 Aligned_cols=407 Identities=11% Similarity=-0.024 Sum_probs=218.9
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002273 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (944)
Q Consensus 41 ~~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (944)
....|.+.-.++++...+-.+|.+++-.+.|++...-.|--..+|......-+..+++.....+|.+++...-+ .+.|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 35667788999999999999999999999999999888887778777666666778888888888888875432 33443
Q ss_pred HHHHHHHHcC-----C----HHHHHHHHHHHHHcCCCChhHHhHHHHHHHH---HHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 121 HCGILYKDEG-----R----LVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 121 ~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
..-..-.+.+ + .-+|.+..-...-.+|.....|......+.. ++. ...+.+.+.-...|.+++...-
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~tP~ 192 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQTPM 192 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcCcc
Confidence 3222222211 1 2223333323333455555554443332211 111 1133444555555555554322
Q ss_pred CCHH-HHHHHH---------HHHHHcC----CHHHHH-------------------------------------------
Q 002273 189 HYAP-AYYNLG---------VVYSELM----QYDTAL------------------------------------------- 211 (944)
Q Consensus 189 ~~~~-~~~~la---------~~~~~~g----~~~~A~------------------------------------------- 211 (944)
++.+ .|...- ..-.-.| -|-.|.
T Consensus 193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence 2111 000000 0000000 011111
Q ss_pred ----------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 212 ----------------GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 212 ----------------~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
-.+++++...+-.++.|+.....+...++-++|+...++.+...|. ....++..+....+.
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccH
Confidence 1234444445556778888888888999999999999998888776 333333333322221
Q ss_pred hh-----hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 276 TY-----GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 276 ~~-----~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
.. .+........-....+.. .-...++++...+++-+-. .+..-+++..-..-.+..-.+.|...|-++-
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~--~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESES--ASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhh--hccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 00 000000000000000000 0000111111111111000 0112233334444444455677777777776
Q ss_pred hhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH
Q 002273 351 HFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEA 427 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~a 427 (944)
+..-....++..-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-+.|...|++++..-... ..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 6543333444433333 4457888888888888888888888777777777788888888888888877653322 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
|..+-..-..-|+...+...=++..++.|.
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 555555555566666666666666666664
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.13 Score=66.50 Aligned_cols=397 Identities=13% Similarity=0.051 Sum_probs=227.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
.+|..-++.+.|.+|+.++++- ...+. ....++.+-.+|...++++.-.-.... ...+| .+...-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHh
Confidence 6788888999999999999985 22221 123444555588888888876665553 11222 23444455677
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV-VYSELMQY 207 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~ 207 (944)
.|++..|..+|+++++.+|+.... +...-......+.++..+...+-.....++...-++.++. +..+.+++
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~-------~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKH-------HSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccc-------hhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 899999999999999999986654 2333334445677777777776666555555555555543 33567777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----HHHHHHHHH-------HhCCCcHHHHHHHHHHHHHhhhh
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES-----AIACYERCL-------AVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al-------~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
+.-..+.. ..+-++..+.. +|.+.....+-+. .++..+..+ .........+..+..+.......
T Consensus 1535 D~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 76655544 22222222221 4555444332221 111111110 00011111222221111111111
Q ss_pred hhhhHHHHHhhcCCC-CCc-h---hHHHhhhcCCHHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHHcCChHHHH
Q 002273 276 TYGRALLLFRLNGSN-FQS-P---FFELVKLEGDINQGVAYYKKALY---YN----WHYADAMYNLGVAYGEMLKFDMAI 343 (944)
Q Consensus 276 ~~~~a~~~~~~~~~~-~~~-~---~~~l~~~~~~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~g~~~~A~ 343 (944)
...+.+......... ..+ . ..+......+..+-+-.+++++- .+ ....+.|...|.+....|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111111111 111 1 11111112223444444444432 12 234689999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PN----------F------SQSLNNLGVVYTVQGK 406 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~ 406 (944)
.++-+|.+.. -++++...|..+...|+-..|+..+++.++.+ |+ . ..+...++......++
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n 1768 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN 1768 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc
Confidence 9999888776 57899999999999999999999999999764 22 1 1234445555555565
Q ss_pred H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 407 M--DAAAEMIEKAIAANPTYAEAYNNLGVLYR------------DAGSISL---AIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 407 ~--~~A~~~l~~al~~~p~~~~a~~~la~~~~------------~~g~~~e---A~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
+ ++-+++|..+.+..|....-++.+|..|. +.|++.. ++..|.+++...-.+...-.-+++.
T Consensus 1769 ~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllT 1847 (2382)
T KOG0890|consen 1769 FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLT 1847 (2382)
T ss_pred hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHH
Confidence 4 35688899999999987777777775543 3455555 6666778877766554443333433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.038 Score=71.09 Aligned_cols=359 Identities=11% Similarity=0.042 Sum_probs=215.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
.++.+-++.+.|..|+.++++. ...+. + ...+..+-.+|...++++.-.-.... ....|+ +..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s-----------l~~ 1454 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS-----------LYQ 1454 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc-----------HHH
Confidence 6788888999999999999985 22221 1 22344455588899998877666653 222333 344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCH
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG-VIYKNRGDL 241 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~ 241 (944)
.-......|++..|..+|+++++.+|+....+...-......+.++..+...+-.....++..+-++.++ .+..+.+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 4455667899999999999999999998888888888888999999999888877766666555555554 344677777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHH-----
Q 002273 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL----- 316 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al----- 316 (944)
+.-..+.. ..+-.+..+. .++.++....+.+.-................+. .....+.+..+.++.-++.
T Consensus 1535 D~~e~~l~---~~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~ls-a~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLS-ACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhhhh---cccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHH-HhhccchHHHHHHHHHHHHHHHHH
Confidence 76655543 1111111111 133333332222111100000000000000000 0111112223322222211
Q ss_pred -------H-hCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHCCCHHHH
Q 002273 317 -------Y-YNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFH---FN----PHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 317 -------~-~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~g~~~~A 376 (944)
. ..++ +.+-|.+....-....+..+-+-.+++++- .+ ....+.|...|++....|+++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 1 1111 112222222221112223333434444332 23 33478999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------C------HHHHHHHHHHHHHcC
Q 002273 377 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT----------Y------AEAYNNLGVLYRDAG 439 (944)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~----------~------~~a~~~la~~~~~~g 439 (944)
..++-+|.+.. -+.+....|..+...|+...|+..+++.++.+ |+ . ..+.+.++.-....|
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~ 1767 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESG 1767 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 99999998876 57899999999999999999999999999763 22 1 224455555566666
Q ss_pred CH--HHHHHHHHHHHhhCCCChhhhhhH
Q 002273 440 SI--SLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 440 ~~--~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
++ +.-+++|+.+.++.|...+-+..+
T Consensus 1768 n~~s~~ilk~Y~~~~ail~ewe~~hy~l 1795 (2382)
T KOG0890|consen 1768 NFESKDILKYYHDAKAILPEWEDKHYHL 1795 (2382)
T ss_pred chhHHHHHHHHHHHHHHcccccCceeeH
Confidence 64 345788999999999777666553
|
|
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00022 Score=61.83 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=64.4
Q ss_pred EecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc--CCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002273 766 SLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV--GLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 842 (944)
Q Consensus 766 ~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~--gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~ 842 (944)
+|.+..+ +.+...+|+|++|+|||+ .+.+ .+-..+ |..-+...|+++.+++...|.+|++.+++++++.
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~-------~~~~-~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVIS-------DDSP-GLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEE-------CChH-HHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4555444 446689999999999999 4331 111111 4445667799999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHH
Q 002273 843 RDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~ 861 (944)
++.+.+. +++...+.++
T Consensus 74 ~~~v~~~--~t~~~~~~~i 90 (92)
T PF13524_consen 74 RERVLKR--HTWEHRAEQI 90 (92)
T ss_pred HHHHHHh--CCHHHHHHHH
Confidence 9998755 7777777655
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=69.32 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=74.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
.-|..++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.++.....+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555666677888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 002273 408 DAAAEMIEKAIAA 420 (944)
Q Consensus 408 ~~A~~~l~~al~~ 420 (944)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=65.40 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHhCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGN----------VEAHIGKGICLQMQNMGRLAFDSF 105 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~ 105 (944)
+-.....+-..|+.++..|+|.+|...|+.++. ..|.. ...+.+++.|++..|+|-++++..
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 334567788899999999999999999998864 24443 346788999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
...+..+|.+..+++..|.+....-+..+|...|.++++++|.-...
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999999985443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.021 Score=63.48 Aligned_cols=138 Identities=13% Similarity=0.198 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-C-C----
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P-N---- 389 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~---- 389 (944)
......+...+.+..+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..++.. . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567788888999999999999988888887642 246778888888889999999998888877711 0 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 390 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 390 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
...++..+|...... +..++++..|+++++.+|+...+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123566666666666 7888889999999999998888888888776
Q ss_pred HHcCC-----------------HHHHHHHHHHHHhhCCC
Q 002273 436 RDAGS-----------------ISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 436 ~~~g~-----------------~~eA~~~~~~al~l~P~ 457 (944)
...=+ ...|+..|-+++...++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 54421 13366666667766666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.029 Score=62.38 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=106.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------PQNACAHTHCGIL 125 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~ 125 (944)
+......|+|+. +++.+...+ +..+..+..+......++++++....+++...- +.+....+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456677888888 333333332 234667777777778899998888888876531 1111111111111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHh----hCCCCHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALK----IDPHYAPAYYNLGV 199 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~--~A~~~~~~al~----~~p~~~~~~~~la~ 199 (944)
+....+.+++..+....... ......+...+...-.. ...+++ +-+-.++..+- ........+...+.
T Consensus 81 lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~ 154 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAK 154 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 22223334444333211100 11111111111111000 011111 11111122221 14455778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 200 VYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887552 2567888889999999999999999998887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00082 Score=76.49 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC---------------H----HHHHHHHHHHHHcCCC
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC---------------D----SVRHRFLSTLEQLGLE 740 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---------------~----~~~~~~~~~~~~~gi~ 740 (944)
.+.|+|.||++...++.+-++-.+.-|...|...||.+..+... + ..-+.+.++...
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 35588999999999999999999999999999999998532100 0 112334443322
Q ss_pred CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHH-hhcCCccccc--
Q 002273 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA-- 815 (944)
Q Consensus 741 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~v~-- 815 (944)
..+++.++.| +.+.+.. ..+..|+ ..+|.+|++||+++|||+|++| ++.+. -+..+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNM---NAALLSDELGIAVRSDDP 408 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHH---HHHHHHHHhCeeEEecCC
Confidence 3467778877 4554432 2233344 3588889999999999999998 34332 23344 3556654332
Q ss_pred ---CCHHHHHHHHHHHhcC
Q 002273 816 ---KNEDEYVQLALQLASD 831 (944)
Q Consensus 816 ---~~~~~y~~~a~~l~~d 831 (944)
-+.++..+...++..+
T Consensus 409 ~~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVE 427 (481)
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 2556666666677665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0048 Score=63.53 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~ 161 (944)
+-....+.+....|++.+|-..+++.++..|.+.-++..--..++.+|+...-...+++++-. +++.+-. ..+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~----sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY----SYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH----HHHHH
Confidence 444555667778899999999999999999999888888888899999999999999998877 5554432 22233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 237 (944)
.++-.+...|-|++|.+.-++++++++.+..+...++.++...+++.++.+...+.-..-... .--|...+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 345567788999999999999999999999999999999999999999999888754332211 1235567888888
Q ss_pred cCCHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCL 252 (944)
Q Consensus 238 ~g~~~~A~~~~~~al 252 (944)
.+.|+.|++.|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=67.30 Aligned_cols=154 Identities=12% Similarity=-0.044 Sum_probs=122.1
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHCCCHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLD 374 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~ 374 (944)
+...|++.+|-...++.++..|.+.-++..--.+++.+|+.+.-...+++.+.. +++. ..+.-.++..+.+.|-|+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 334677788888899999999998888888888889999988888888888877 6665 445556777788899999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 375 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
+|.+.-++++++++.+.-+...++.++...|++.++.++..+--..-... ..-|...+.++...+.|+.|++.|.+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999998887654322111 22345567788888899999999876
Q ss_pred HH
Q 002273 451 CL 452 (944)
Q Consensus 451 al 452 (944)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 44
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.015 Score=62.93 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCcHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYER-CLAVSPNFEIA 261 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~ 261 (944)
.+++..++-..|....+|+.-+++.+.+-.. -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999987666 44567788889999999 9999999999999 55556678888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 338 (944)
+..+|.+|.++-... ........++|+..|.++.+.+|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s---------------------~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLES---------------------NFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHc---------------------CccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 888888887653220 011122368888888888888854 3444555666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=52.80 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 432 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la 432 (944)
++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
|
|
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=74.97 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=107.2
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 682 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.++|.+|+... +..++.++...+.+.+.|.-++|-.+... .. .++ +++|.+.++.| +.+.|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 36677777654 57889999999999999975555433221 00 234 68999999987 55555
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~ 833 (944)
....+|+|+ ..+|..|+.||++.|||+|.+|- +.+ .-+..+...|+...+- -+.++..+...++.+|+.
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~---~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQF---YNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCccHH---HHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 336688887 35888899999999999999984 433 2334445667765442 267887777778999987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
.+++.++ +++.+...|.=-.++.+..+|.+.
T Consensus 435 y~~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 435 YRKNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6666544 444455455433456666666543
|
|
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0024 Score=69.81 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=143.0
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeee----cccCCCCCCCCCccEEEecCCCCCcccccccccceE
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVT----WIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELI 654 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~----~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~ 654 (944)
.++-+.|+..++|++|=..|+-...-.--.....=||=+. ..|--+-...+..+.+.+.. .. .......|+..
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f-~~--~~~~~~~~~~~ 157 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAF-PK--LEAGVKPENVV 157 (357)
T ss_pred HHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeecc-cc--ccccCCCCceE
Confidence 5788899999999999888887633222222223444222 12222222223344444321 11 01111112222
Q ss_pred EcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecC---CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 655 RLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFN---NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 655 ~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
..-.. +. +.. ...+..+..+.. +..|...+. -..+++..+-+++..... +-.++..++. ....+
T Consensus 158 ~tG~P-vr~~~~~--~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~ 226 (357)
T COG0707 158 VTGIP-VRPEFEE--LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEE 226 (357)
T ss_pred EecCc-ccHHhhc--cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHH
Confidence 11110 00 000 000000111111 444444443 335566555555554443 3455555443 22567
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcc---cccchhHHH
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLL 805 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l 805 (944)
+.....+.|+ +.+.|. .++....|..+|+++ . +|++|..|.+++|+|+|-.|=..- .....|-.|
T Consensus 227 ~~~~~~~~~~----~~v~~f---~~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 227 LKSAYNELGV----VRVLPF---IDDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred HHHHHhhcCc----EEEeeH---HhhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 7777777887 666666 357888889999999 6 899999999999999998774333 455678889
Q ss_pred hhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 806 TKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 806 ~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
...|..-++.+ +.+.+++...++.++++.+.++++..++..
T Consensus 296 ~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 296 EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 98898877754 468999999999999999999999988763
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.36 Score=57.17 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (944)
+.+.+|..+|....+.|...+|++.|-++ +++..|.....+..+.|+|++-+.++.-+-+.... +..-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 45789999999999999999999998875 56778888899999999999999998877665432 2233344455
Q ss_pred HHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 269 l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
|.+.++..+-+.+.. ..+..-.....+-+...+.|+.|.-+|... .-|..++..+..+|+|+.|...-++
T Consensus 1176 yAkt~rl~elE~fi~--gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHhchHHHHHHHhc--CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555554422222111 111111224455667778888887777643 3467788888888999988887777
Q ss_pred HHhhCC-----------C--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 349 AFHFNP-----------H--------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 349 al~~~p-----------~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
+-.... . .++-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+
T Consensus 1246 Ans~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1246 ANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 643210 0 133444566777788888888888888888877777777788877765
Q ss_pred cCCHHHHHHHHHHHHHhC--C------CCHHHHHHHHHHHHHcCCHHHHH
Q 002273 404 QGKMDAAAEMIEKAIAAN--P------TYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~--p------~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
- ++++-.+.++-....- | +....|..+..+|.+-..|+.|.
T Consensus 1326 y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3 4455555444332210 1 12345556666666666666554
|
|
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0036 Score=71.04 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=111.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 742 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~-----~~~~~~~~~~~~~-------~gi~~~ 742 (944)
|..++.+..|+ .|..+.-+.++.++|+..|+ .+|++++.+..+ ...+..+.+...+ .|.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 44456677776 89999999999999999996 688888765422 2244444444433 3552 3
Q ss_pred cEEEccCccCcHHHHHhcccccEEecCCCCCC-cccHHHhhhcCC----cEEecCCCcccccchhHHHhhcCCcccc--c
Q 002273 743 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 815 (944)
Q Consensus 743 rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~-~~t~~eal~~gv----Pvvt~~g~~~~~r~~~~~l~~~gl~~~v--~ 815 (944)
.+.|.+.++ .++..+.|+.+||+|.|+-+-| +.++.|.++++. |+|. |+.+++- ..+. .-++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 455666666 7899999999999999998855 789999999988 6776 7776332 1111 1122 4
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.|.++..+...+-.+.+ +++++--+++++.+.+ +|...|++.+=
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl 477 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFL 477 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHH
Confidence 57777766555555544 4555555556666543 46777666543
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.021 Score=61.92 Aligned_cols=179 Identities=12% Similarity=0.014 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHcCCCChhH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHKA-LSADPSYKPA 152 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 152 (944)
+++....+-.+|....+|+.-+++.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999988887666 45567788889999988 99999999999994 4555667777
Q ss_pred HhHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 002273 153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (944)
Q Consensus 153 ~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (944)
....+.+|..+-.. .......++|+..|.++.+.+|+. ..-.+++.++...|.-.+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66667776665332 122345899999999999999653 444566666666665333332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
.-.+...+..++.+..-.|++++|.+.++++++..|..-.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1224455566778888899999999999999999877543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00025 Score=51.55 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666665553
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=73.86 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-------HH-HHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-------DS-VRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-------~~-~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
.+.|+|.||++...++++-++-.+.-|...|...||.+..+... .. +.+.+.++. ....+++.++.|
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~-----~~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT-----EDKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc-----cCCcEEEEeeCC
Confidence 35688999999999999999999999999999999988643110 00 112333332 224567778877
Q ss_pred CcHHHHHhcccccE--EecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHh-hcCCccccc------CCHHH
Q 002273 752 LNHDHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA------KNEDE 820 (944)
Q Consensus 752 ~~~~~~~~~~~~Di--~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~-~~gl~~~v~------~~~~~ 820 (944)
+.+.| ...+| |+ ..+|-+|++||+++|||+|++|- +.+ ..+..+. .+|+.--+. -+.++
T Consensus 344 -Q~~iL---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~DQ~---~na~~~~~~~g~g~~l~~~~~~~~~~e~ 413 (451)
T PLN03004 344 -QVPVL---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYAEQR---FNRVMIVDEIKIAISMNESETGFVSSTE 413 (451)
T ss_pred -HHHHh---CCCccceEe---ccCcchHHHHHHHcCCCEEeccccccch---hhHHHHHHHhCceEEecCCcCCccCHHH
Confidence 55554 44555 65 34888899999999999999983 332 2333443 345543332 25566
Q ss_pred HHHHHHHHhcCH
Q 002273 821 YVQLALQLASDV 832 (944)
Q Consensus 821 y~~~a~~l~~d~ 832 (944)
-.+...++..|+
T Consensus 414 l~~av~~vm~~~ 425 (451)
T PLN03004 414 VEKRVQEIIGEC 425 (451)
T ss_pred HHHHHHHHhcCH
Confidence 666666666664
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=72.28 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=107.8
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC----HHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
+.+.|+|.||.+...+++.-+.-.+.=|...-..-+|++..+... ..+.+.+..+....| +++.++.| +.
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HH
Confidence 456689999999989887766655555556666688888643211 112234444433333 45667877 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHH-hhcCCccccc------CCHHHHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLA 825 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~v~------~~~~~y~~~a 825 (944)
+.|+ ...++.|+ ..+|.+|++||+++|||+|++|- +.+ .-+.++ ..+|+.--+. -+.++-.+..
T Consensus 329 ~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~---~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av 401 (453)
T PLN02764 329 LILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGDQV---LNTRLLSDELKVSVEVAREETGWFSKESLRDAI 401 (453)
T ss_pred HHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCcccchH---HHHHHHHHHhceEEEeccccCCccCHHHHHHHH
Confidence 5553 35566676 35888999999999999999984 332 233344 3344432121 2667777777
Q ss_pred HHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002273 826 LQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKG 875 (944)
Q Consensus 826 ~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 875 (944)
.++..+. +..+++|++.++..... .+.-..-+.+++..+. |.+++.+
T Consensus 402 ~~vm~~~~~~g~~~r~~a~~~~~~~--~~~GSS~~~l~~lv~~-~~~~~~~ 449 (453)
T PLN02764 402 NSVMKRDSEIGNLVKKNHTKWRETL--ASPGLLTGYVDNFIES-LQDLVSG 449 (453)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHH-HHHhccc
Confidence 7777665 45566666666533222 1222334466665544 5556654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00019 Score=77.89 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+-..|..++..++|+.|+..|.++++++|+.+..+-..+..+.+.+++..|+..+.++++.+|....+|+..|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
..+++.+|...|++...+.|+.+.+...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999999999999876433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0025 Score=67.90 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
.|+...+...+.+..+.|..+|+++.+..+.....|...|...+. .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 345555666666667777777777765444456666666666555 3444447777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (944)
.|+.+.|...|++++..-+..... ..+|......-...|+.+...++.+++.+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 777777777777777665543311 112333444444556666666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=49.20 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 414 l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
|+++++++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555666666666666666666666655554
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00029 Score=76.44 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+-..+......+.++.|+..|.++++++|+++..+-+.+..+.+.+++..|+.-+.++++.+|....+|+..|......+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 44556667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
++.+|+..|++...+.|+++.+...+..+-...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 999999999999999999998877666554433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0052 Score=63.47 Aligned_cols=101 Identities=21% Similarity=0.163 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (944)
.|.-+..-|+-|++..+|..|+..|.+.++..-. ++..|.+.+-+....|+|..|+....+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4666788899999999999999999999988433 466788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 232 GVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
+.+++.+.++.+|....+..+.++.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999988866653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.32 Score=53.51 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Q 002273 68 LALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSAD 146 (944)
Q Consensus 68 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 146 (944)
..+|+.++...+.++..|........+.+.+.+--..|.+++..+|+++..|...|.-.+.-+. .+.|...+.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4556666666666666666666666666666666666777777777777766666665555554 666666677777777
Q ss_pred CCChhHHh
Q 002273 147 PSYKPAAE 154 (944)
Q Consensus 147 p~~~~~~~ 154 (944)
|+.+..+.
T Consensus 171 pdsp~Lw~ 178 (568)
T KOG2396|consen 171 PDSPKLWK 178 (568)
T ss_pred CCChHHHH
Confidence 66665543
|
|
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0045 Score=70.34 Aligned_cols=139 Identities=16% Similarity=0.069 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-CHH----HHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDS----VRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~----~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
.+.|+|.||.+..+++++.+.-.+.-|...+...||.+..+.. ++. +...+.++ + .+|..+.++.| +.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-----~-~~~g~v~~w~P-Q~ 335 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-----I-SGRGYIVKWAP-QK 335 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-----c-cCCeEEEccCC-HH
Confidence 4568999999999999999999999999999999998863311 111 12233332 2 46777778887 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHhhc-CCcccc--cCCHHHHHHHHHHHh
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLA 829 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~-gl~~~v--~~~~~~y~~~a~~l~ 829 (944)
+.|. ...+..|+ ..+|-+|++||+++|||+|++|- +.+ ..+-.+... |+.--+ .-+.++..+...++.
T Consensus 336 ~iL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~---~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm 408 (451)
T PLN02410 336 EVLS-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSDQK---VNARYLECVWKIGIQVEGDLDRGAVERAVKRLM 408 (451)
T ss_pred HHhC-CCccCeee---ecCchhHHHHHHHcCCCEEeccccccCH---HHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHH
Confidence 5553 34455566 35788899999999999999984 432 223333222 333111 125566666666776
Q ss_pred cCH
Q 002273 830 SDV 832 (944)
Q Consensus 830 ~d~ 832 (944)
.|+
T Consensus 409 ~~~ 411 (451)
T PLN02410 409 VEE 411 (451)
T ss_pred cCC
Confidence 664
|
|
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0036 Score=71.72 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC----HHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
.+.|+|.||+....++++.++-.+.-|...+...||.++.+... ......+.++.. ...+++.++.| +.+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~ 355 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVA 355 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHH
Confidence 34588999999999999999999999999999999988643211 011223333322 34567778887 455
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
.|. ...+++|+ ..+|-+|++||+++|||+|++|
T Consensus 356 vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 356 ILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred Hhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCC
Confidence 553 24577777 3588889999999999999998
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.022 Score=58.51 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....+.. .. . ......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~-~-l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AH-G-LQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HH-H-HHHHHH
Confidence 34445555566677777777777777777777777777777777777777776666654322211111 00 0 001111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 240 (944)
+ +.+.....+. ..+++.+..+|++.++.+.+|..+...|+.++|++.+-..++.+.. +..+...+-.++...|.
T Consensus 212 l---l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 L---LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred H---HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 1 1111222111 2234455678999999999999999999999999988888877543 44555556666665554
Q ss_pred HHHHHHHHH
Q 002273 241 LESAIACYE 249 (944)
Q Consensus 241 ~~~A~~~~~ 249 (944)
-+.+...++
T Consensus 288 ~Dp~~~~~R 296 (304)
T COG3118 288 ADPLVLAYR 296 (304)
T ss_pred CCHHHHHHH
Confidence 444443333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0085 Score=61.49 Aligned_cols=160 Identities=22% Similarity=0.221 Sum_probs=112.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH--H
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG--I 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~ 124 (944)
..+..+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+...-....+.. .....+ .
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ 211 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIE 211 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHH
Confidence 4455677788999999999999999999999999999999999999999999999888776433222221 111111 2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 202 (944)
.+.+.....+ ...+++.+..+|++.+. -+.++..+...|+.++|++.+-..++.+-. +..+...+-.++.
T Consensus 212 ll~qaa~~~~-~~~l~~~~aadPdd~~a-------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 212 LLEQAAATPE-IQDLQRRLAADPDDVEA-------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHhcCCC-HHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 3333333222 23455667789998876 566677777889999999999998887543 4556666666666
Q ss_pred HcCCHHHHHHHHH
Q 002273 203 ELMQYDTALGCYE 215 (944)
Q Consensus 203 ~~g~~~~A~~~~~ 215 (944)
..|.-+.+...++
T Consensus 284 ~~g~~Dp~~~~~R 296 (304)
T COG3118 284 AFGPADPLVLAYR 296 (304)
T ss_pred hcCCCCHHHHHHH
Confidence 6654444433333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.22 Score=53.14 Aligned_cols=161 Identities=12% Similarity=-0.027 Sum_probs=101.7
Q ss_pred HHhCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc-------CCCChhHHhHH
Q 002273 93 QMQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECL 156 (944)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~p~~~~~~~~l 156 (944)
.++|+++.|..++.|+-... |+. ...++..|......+ ++++|..+++++.++ .....+.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35566666666666665433 221 234566677777777 888888888777766 23344555667
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCN 230 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 230 (944)
..++..++.++...+.++ +|....+.+-...|+.+..+...-.++...++.+++.+.+.+++..-+- +.+....
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 778888999998877765 4555555666667887888866666676789999999999999886542 2222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 231 MGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
....+.. .....|...+...+..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHH
Confidence 2222222 3345566666665543
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00036 Score=47.49 Aligned_cols=33 Identities=42% Similarity=0.753 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567777777777777777777777777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00022 Score=48.34 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=19.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 380 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411 (944)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 411 (944)
|+++++++|+++.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
|
|
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0026 Score=73.43 Aligned_cols=107 Identities=14% Similarity=0.022 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-H---HHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~---~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
++.|+|.||.+...+++.-+.-.+.-|...+...||.++.+... + ...+.+.++. ....|++.++.| +.+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~~v~~w~P-Q~~ 357 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-----KGKGLIIRGWAP-QVL 357 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-----ccCCEEEecCCC-HHH
Confidence 45578999999888877766666677888888889988653211 0 1122333222 145678888887 455
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcc
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVH 796 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~ 796 (944)
.|.. ..+..|+ ..+|-+|++||+++|||+|++| ++.+
T Consensus 358 iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~~~DQ~ 396 (482)
T PLN03007 358 ILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWPVGAEQF 396 (482)
T ss_pred Hhcc-Cccceee---ecCcchHHHHHHHcCCCeeeccchhhhh
Confidence 4432 2233455 3578889999999999999998 4443
|
|
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0045 Score=71.21 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
.+.|+|.||++...++++.+.-.+.-|...+...||.++.+... ....+.+.++. .+|..+.++.| +.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~------~~rg~v~~w~P-Q~ 351 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRV------MGRGLVCGWAP-QV 351 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHh------ccCeeeeccCC-HH
Confidence 34588999998888899999999999999999888887643211 01122333332 24556668876 44
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc----------CCHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA----------KNEDEYV 822 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~----------~~~~~y~ 822 (944)
+.| ....++.|| ..+|-+|++||+++|||+|++| ++.+.. +.-++..+|..--+. -+.++..
T Consensus 352 ~iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n--a~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~ 425 (475)
T PLN02167 352 EIL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLN--AFTMVKELGLAVELRLDYVSAYGEIVKADEIA 425 (475)
T ss_pred HHh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhh--HHHHHHHhCeeEEeecccccccCCcccHHHHH
Confidence 444 334456666 3588889999999999999998 444432 111244445432221 1455665
Q ss_pred HHHHHHhcC
Q 002273 823 QLALQLASD 831 (944)
Q Consensus 823 ~~a~~l~~d 831 (944)
+...++..+
T Consensus 426 ~av~~~m~~ 434 (475)
T PLN02167 426 GAVRSLMDG 434 (475)
T ss_pred HHHHHHhcC
Confidence 555566543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0018 Score=66.74 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
.++.+-..|+.|++.++|..|+..|.+.|+..-. ++..|.+.+.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4566778899999999999999999999997543 567889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPS 148 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~ 148 (944)
+.|++.+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00049 Score=46.74 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 425 ~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+++++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.086 Score=52.97 Aligned_cols=206 Identities=13% Similarity=0.070 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TA 210 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 210 (944)
-..|+..-..++.++|.+-..+...-.++..++ .+..+-++++.+.++.+|.+-.+|...-.+....|++. .-
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344566666777777777766555444444443 34667778888888888888888888878888888777 77
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~ 290 (944)
++..++++..+..+.-+|...-.+....+.++.-+.+....++.+-.+..+|...-.+......
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~---------------- 196 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG---------------- 196 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC----------------
Confidence 7888888888888888888888888888888888888888888776665555443221111000
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--ChHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-ML--KFDMAIVFYELAF-HFNPHCAEACNNLGVI 366 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 366 (944)
....-..+.-+.+..+.+...|++..+|..|.-++.. .| .+.+-.......+ ......+..+..+..+
T Consensus 197 --------~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~ 268 (318)
T KOG0530|consen 197 --------VISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL 268 (318)
T ss_pred --------CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH
Confidence 0001122555667777788888888888888777765 33 1233333333333 2233345555555554
Q ss_pred H
Q 002273 367 Y 367 (944)
Q Consensus 367 ~ 367 (944)
|
T Consensus 269 ~ 269 (318)
T KOG0530|consen 269 Y 269 (318)
T ss_pred H
Confidence 4
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.18 Score=59.43 Aligned_cols=209 Identities=15% Similarity=0.024 Sum_probs=145.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG---------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 115 (944)
.+.-.+..|.....+.++.+|..+..++...-+. .++..-..|.+....|++++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 5566788899999999999999999988775443 24556677888999999999999999999987754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHH----hh
Q 002273 116 ---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEAL----KI 186 (944)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al----~~ 186 (944)
..++..+|.+..-.|++++|..+...+.+....+.. +.....+....+.++..+|+. .+....|...- ..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 356778899999999999999999998887544322 233344555667777888833 33333333222 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY--AE-AYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.|-........+.++...-+++.+.....+.++. .|.. .. .++.++.++...|++++|...+........
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3443344444455554444477766666666553 2222 22 335789999999999999999988776643
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.012 Score=71.69 Aligned_cols=177 Identities=17% Similarity=0.126 Sum_probs=118.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce--EEE--ecCCCC-CHHHHHHHHHHHH--------HcCCC-CCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVV--KCKPFC-CDSVRHRFLSTLE--------QLGLE-SLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~~--~~~~~~-~~~~~~~~~~~~~--------~~gi~-~~rv 744 (944)
|..++....++ .|..+.-+.+|.+.|...|+-+ ++| +..|.. +-+..+.++..+. +.|-. ..=|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 34456666766 8999999999999999999853 333 333322 1122233333332 23321 1225
Q ss_pred EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhc-----CCcEEecCCCcccccchhH-HHhhcCCcccc--c
Q 002273 745 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI--A 815 (944)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v--~ 815 (944)
+++...-..++++++|..+||+|.|.-. +-+.++.|+++| ||+|+. .-.|++ .| |-..++ .
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L---~~~AllVNP 511 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL---GAGAILVNP 511 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh---CCceEEECC
Confidence 5554434478999999999999999988 558899999999 677774 222222 22 322333 3
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.|.++..+...+.++ +++++++..+++++.+. -+|...|++.+...+...|.
T Consensus 512 ~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~---~~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 512 WNITEVAASIAQALNMPEEEREKRHRHNFMHVT---THTAQEWAETFVSELNDTVV 564 (934)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---cCCHHHHHHHHHHHHHHHHh
Confidence 578888887777666 88888888888888764 36899999998888887774
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.083 Score=53.07 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=133.7
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE-SAIACY 248 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~ 248 (944)
..-..|+++-+.++.++|.+-.+|...-.++..++ +..+-++++.++++.+|.+..+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 34456777888889999998888877777766554 5777888999999999999999998888888888888 778888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 249 ERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYN 328 (944)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 328 (944)
+.++..+..+..+|.....++...+ .++.-+.+..++++.+-.+-.+|..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~------------------------------~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFK------------------------------DYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHh------------------------------hHHHHHHHHHHHHHHhhhccchhhe
Confidence 8899888888888877766655543 3477777777777765554444433
Q ss_pred HHHHHHH-cC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC--CHHHHHHHHHHHH-hhCCCCHHHHHHHH
Q 002273 329 LGVAYGE-ML-----KFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RD--NLDKAVECYQMAL-SIKPNFSQSLNNLG 398 (944)
Q Consensus 329 la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la 398 (944)
.-.+... .| ..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-.......+ ......+..+..+.
T Consensus 187 Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~ 266 (318)
T KOG0530|consen 187 RYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLL 266 (318)
T ss_pred eeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHH
Confidence 2211111 11 13344566677777888888888888777765 33 1233333333333 22333444444444
Q ss_pred HHH
Q 002273 399 VVY 401 (944)
Q Consensus 399 ~~~ 401 (944)
.+|
T Consensus 267 d~~ 269 (318)
T KOG0530|consen 267 DLY 269 (318)
T ss_pred HHH
Confidence 444
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0041 Score=70.61 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=93.8
Q ss_pred CCCCeEEEecCCCCcCC-HHHHHHHHHHHhHcCCceEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 679 TNGFITFGSFNNLAKIT-PKVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
+.+.|+|.||.+...++ ..+.++... |...-..-||++..+.. .+...+.+.++....| +++.+++| +
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q 322 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-Q 322 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-H
Confidence 45678999999999998 555555554 44444456788764321 1123445555554444 35567777 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH-hhcCCccccc------CCHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLAL 826 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~gl~~~v~------~~~~~y~~~a~ 826 (944)
.+.|. ...++.|| ..+|.+|++||+++|||+|++|--.= ....+.++ ..+|+.--+. -+.++-.+...
T Consensus 323 ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 55552 24456666 35888999999999999999984211 22334455 3456653331 26667766666
Q ss_pred HHhcCH-HHHHHHHHHHHHH
Q 002273 827 QLASDV-TALANLRMSLRDL 845 (944)
Q Consensus 827 ~l~~d~-~~~~~~r~~~~~~ 845 (944)
++..|. +..+++|++.++.
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHhcCChhhHHHHHHHHHHH
Confidence 766654 4455566655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.46 Score=51.45 Aligned_cols=372 Identities=13% Similarity=0.052 Sum_probs=213.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
-++.-++.+|.+...|+.+...+..++.+++-.+.|++...-.|--+.+|...-..-...+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455678899999999999999999999999999999999888887777776666566667888888888888765433
Q ss_pred hhHHhHHHHHHHHHHHHHHHc------C----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHH
Q 002273 150 KPAAECLAIVLTDLGTSLKLA------G----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTA 210 (944)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~------g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A 210 (944)
.+.|. .|. .|.+. | ..-+|.+..-...-.+|.....|...+..+. ++.+.+.-
T Consensus 109 ldLW~----lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 109 LDLWM----LYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HhHHH----HHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 22111 111 11111 1 1122333322333346777777777766554 33455666
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHH---------HHHHHcC----CHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHH
Q 002273 211 LGCYEKAALERPMYAE-AYCNMG---------VIYKNRG----DLESAIACYERCLAVS-------PNFEIAKNNMAIAL 269 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~-~~~~la---------~~~~~~g----~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l 269 (944)
...|.+++..--.+.+ .|...- ..-.-.| -|-.|...|++...+. |-+.........
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-- 258 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-- 258 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc--
Confidence 7778888765333322 111111 1100111 2334444444443321 111111100000
Q ss_pred HHhhhhhhhhHHHHHhhcCCCCCchhHHH-----hhhcC-CHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 270 TDLGTKTYGRALLLFRLNGSNFQSPFFEL-----VKLEG-DIN-QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-----~~~~~-~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
....+ +..++.+ +...+ -.. .---.+++++...+-.+++|+.........++-+.|
T Consensus 259 ----------------~s~S~-WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 259 ----------------TSDSN-WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ----------------cccch-hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 00000 0001110 11111 112 222346777777888889999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------CCC-CHH-----------
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------------------KPN-FSQ----------- 392 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~-~~~----------- 392 (944)
+...++.+...|. ....++.+|....+.++...+|+++.+. ++. .++
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~ 398 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTF 398 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhh
Confidence 9888888777665 6667777777777766666666665532 111 011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~-~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
+++.+-..-.+..-.+.|...|-++-+..-...+++..-|. -|...|++.-|...|+-.+...||++--....+..+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 12222222233444677777777776554222333333332 25678899999999999999999887555544444444
Q ss_pred c
Q 002273 472 I 472 (944)
Q Consensus 472 ~ 472 (944)
+
T Consensus 479 i 479 (660)
T COG5107 479 I 479 (660)
T ss_pred h
Confidence 4
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0064 Score=69.42 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
...|+|.||.+..+.+++.++..+.-|...+...||.++..... .....+.++. ..+|.++.++.| +.+.|..
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~-~~~~~~~~~~-----~~~~g~v~~w~P-Q~~iL~h 340 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA-QNVQVLQEMV-----KEGQGVVLEWSP-QEKILSH 340 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc-cchhhHHhhc-----cCCCeEEEecCC-HHHHhcC
Confidence 34588999999999999999999999999999888987643211 1112222221 125555678877 5555533
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHh
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 829 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~-~gl~~~v~-------~~~~~y~~~a~~l~ 829 (944)
..+..|| ..+|-+|++||++.|||+|++| ++.+ +-+-++.. +|+.-.+. -+.++-.+...++.
T Consensus 341 -~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 341 -MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred -cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 3344666 3478889999999999999998 4443 23334443 45543231 25556666666666
Q ss_pred cCH
Q 002273 830 SDV 832 (944)
Q Consensus 830 ~d~ 832 (944)
.+.
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 554
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0054 Score=69.57 Aligned_cols=151 Identities=12% Similarity=0.068 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCCcCCHH-HHHHHHHH-HhHcCCceEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 680 NGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.+.|+|-||.+..+++++ +.++...+ ....|- +|+...+.. .+.+.+.+.++.... .+++.++.| +
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~~-----g~~v~~W~P-Q 321 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKGR-----GVVWGGWVQ-Q 321 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhcC-----CcEeeccCC-H
Confidence 456889999999998888 88877776 777775 566542211 012334444444333 356668877 5
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHh-hcCCccccc------CCHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQL 824 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~v~------~~~~~y~~~ 824 (944)
.+.|+- ..+..|+ ..+|-+|++||+++|||+|++| ++.+. .+-++. .+|+.--+- =+.++-.+.
T Consensus 322 ~~iL~H-~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~~~~~~~~~~l~~a 394 (442)
T PLN02208 322 PLILDH-PSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL---FTRLMTEEFEVSVEVSREKTGWFSKESLSNA 394 (442)
T ss_pred HHHhcC-CccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH---HHHHHHHHhceeEEeccccCCcCcHHHHHHH
Confidence 565533 4445566 3578889999999999999998 55443 233333 356653332 155666665
Q ss_pred HHHHhcCH-HHHHHHHHHHHHH
Q 002273 825 ALQLASDV-TALANLRMSLRDL 845 (944)
Q Consensus 825 a~~l~~d~-~~~~~~r~~~~~~ 845 (944)
..++..|+ +..+++|++.++.
T Consensus 395 i~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 395 IKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHhcCCchhHHHHHHHHHHH
Confidence 65666554 4456666666543
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0041 Score=71.46 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=87.5
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-------CHH----HHHHHHHHHHHcCCCCCcEEEccC
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~----~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
+.|+|.||.+...++.+.+.-.+.-|.+.+...||.+..+.. +.. ..+.+.++.+..| +++.++
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g-----~~v~~w 346 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRG-----LVWPTW 346 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCC-----eEEeec
Confidence 457899999988999998999999999999988998764211 001 1233333332222 456677
Q ss_pred ccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhH-HHhhcCCccccc--------CCH
Q 002273 750 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVS-LLTKVGLKHLIA--------KNE 818 (944)
Q Consensus 750 ~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~-~l~~~gl~~~v~--------~~~ 818 (944)
.| +.+.|.- ..+-.|| ..+|-+|++||+++|||+|++| ++.+. -+. +...+|+.-.+. -+.
T Consensus 347 ~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~---Na~~~~~~~gvG~~~~~~~~~~~~~~~ 418 (480)
T PLN00164 347 AP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHL---NAFELVADMGVAVAMKVDRKRDNFVEA 418 (480)
T ss_pred CC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchh---HHHHHHHHhCeEEEeccccccCCcCcH
Confidence 76 4555532 2333455 3588889999999999999998 45433 232 234456553331 145
Q ss_pred HHHHHHHHHHhcCH
Q 002273 819 DEYVQLALQLASDV 832 (944)
Q Consensus 819 ~~y~~~a~~l~~d~ 832 (944)
++-.+...++..|.
T Consensus 419 e~l~~av~~vm~~~ 432 (480)
T PLN00164 419 AELERAVRSLMGGG 432 (480)
T ss_pred HHHHHHHHHHhcCC
Confidence 56555555666654
|
|
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=67.18 Aligned_cols=141 Identities=9% Similarity=0.029 Sum_probs=89.3
Q ss_pred CCCeEEEecCCCCc-CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+..++|.++.+... ....+.....+.+...+.-.++..+..... . ..+ +++|.+.+.++ .. .
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~---~ 300 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HD---W 300 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HH---H
Confidence 34566777766543 445677777777777655445555432111 0 233 68899988865 33 4
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..||+++ ..+|.+|+.|||.+|||+|.++-..- .-..+..+...|..-.+.. +.++..+...++.+|+ .+
T Consensus 301 ll~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 301 LLPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred Hhhhhheee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 456699999 45777999999999999999874321 2334556677787655543 6777777777777754 44
Q ss_pred HHHHHHH
Q 002273 836 ANLRMSL 842 (944)
Q Consensus 836 ~~~r~~~ 842 (944)
++.++..
T Consensus 376 ~~~~~~~ 382 (401)
T cd03784 376 RRAAALL 382 (401)
T ss_pred HHHHHHH
Confidence 4444333
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0093 Score=67.89 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.|+|.||.+...++.+.++..+.-|...+...||.+..+.. .+.+.+.+.++ + .+|+.+.++.| +.+.|
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-----~-~~~g~i~~W~P-Q~~IL 346 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-----V-SGRGMICGWSP-QVEIL 346 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-----c-CCCeEEEEeCC-HHHHh
Confidence 4568899999999999999999999999999999998764311 11111233322 2 46666778887 55555
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcc
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVH 796 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~ 796 (944)
+- ..+..|+ ..+|-+|++||+++|||+|++| |+.+
T Consensus 347 ~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 347 AH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred cc-cccceee---ecCccccHHHHHHcCCCEEecCccccch
Confidence 33 4455565 3578889999999999999998 4544
|
|
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=75.80 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+..++|-||++..+-.| +.++..++.+.+.|...||-..+. .... + ++.+.+..+.| +.+.|+
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh
Confidence 34577999998765444 448889999999999777765431 1111 1 46678888987 666664
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~ 833 (944)
...+++|+ ..+|-+|+.||++.|||+|++| |+.+. -+..+...|....+- -|.++..+...++..|+.
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~---na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPR---NAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHH---HHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCCcccCCc---cceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 45567776 2477789999999999999998 55432 344566667754332 267888888888889986
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
..++.++ +++.+...|.--.++.+..+|-+
T Consensus 412 y~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 412 YKENAKR-LSSLFRDRPISPLERAVWWIEYV 441 (500)
T ss_dssp HHHHHHH-HHHTTT-----------------
T ss_pred HHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Confidence 5555433 44444444432233444444433
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.099 Score=56.36 Aligned_cols=128 Identities=27% Similarity=0.317 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCC-------C
Q 002273 305 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------N 372 (944)
Q Consensus 305 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~ 372 (944)
..+|..+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..-.. ..+.+.++.+|..-. +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 455555555222 23344555555555554 335666666666666554332 233555665555431 2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
...|...|.++.... ++.+.+.+|.+|.. ..++++|..+|+++.+... ..+.+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 246777777776655 67788888877755 3478888888888887765 77778888 665555
|
|
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0091 Score=68.88 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-----------C--HHHHHHHHHHHHHcCCCCCcEEE
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C--DSVRHRFLSTLEQLGLESLRVDL 746 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~--~~~~~~~~~~~~~~gi~~~rv~~ 746 (944)
.+.|+|-||++...++++.++..+.-|...+...||.+..+.. + +.....+.++. .+|+.+
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~------~~~g~v 346 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT------KDIGKV 346 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh------ccCceE
Confidence 3457899999999999999999999999999988888753210 0 00122333222 367777
Q ss_pred ccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCc
Q 002273 747 LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLK 811 (944)
Q Consensus 747 ~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~ 811 (944)
.++.| +.+.| ....++.|+ ..+|-+|++||++.|||+|++| ++.+.. +.-++..+|+.
T Consensus 347 ~~W~P-Q~~iL-~H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~N--a~~~v~~~g~G 406 (481)
T PLN02554 347 IGWAP-QVAVL-AKPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFN--AFEMVEELGLA 406 (481)
T ss_pred EeeCC-HHHHh-CCcccCccc---ccCccchHHHHHHcCCCEEecCccccchhh--HHHHHHHhCce
Confidence 78887 45555 235566666 3578889999999999999998 444422 11234555554
|
|
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=66.35 Aligned_cols=164 Identities=17% Similarity=0.082 Sum_probs=118.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
..+.||..+|+ .|.-+-.+.+--.++... .++++.|.+ +......++...+.+ ++++.+.-.-. ..-...
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~---~~~~~~~i~~~-~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRH---PGRVLVVIGYD-EPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhc---CceEEEEeeec-HHHHHH
Confidence 34579998877 899899999888888876 889998876 556777777777766 34554433322 345566
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC------------------CHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------------------NED 819 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~------------------~~~ 819 (944)
.|..+|++|-|+-| +-|.|-++||..|++.|. .++| ||.|.|.+ |++
T Consensus 365 i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~~ 430 (487)
T COG0297 365 IYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNPD 430 (487)
T ss_pred HHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------CccceecCccchhccCceeEEEEecCCHH
Confidence 78999999999988 889999999999966555 5666 77766642 444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 820 EY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 820 ~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
++ +.+|+.+..+++.. +|.-.+..|. ..|.++..+..+.+.|+.+-.
T Consensus 431 ~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 431 HLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhc
Confidence 44 45666777776542 4444455554 568999999999999998754
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0085 Score=68.32 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=88.8
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+.++|-||++.. .++++.++..+.-+...+...||.+..+.. +.....+.++ + ++|+.+.++.| +.+.|..
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC
Confidence 346788888764 789999999999999999988887754211 0111222222 2 47888888887 5555532
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHh-hcCCcccc-cCCHHHHHHHHHHHhcCHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~v-~~~~~~y~~~a~~l~~d~~~~ 835 (944)
..+-.|+ ..+|-+|++||+++|||+|++| ++.+. -+..+. .+|+.=-+ --+.++-.+...++..|++.+
T Consensus 345 -~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~---na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 345 -QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFV---NCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred -CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHH---HHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 3334555 3588889999999999999988 45432 122221 13332111 136677555555666776554
Q ss_pred HH
Q 002273 836 AN 837 (944)
Q Consensus 836 ~~ 837 (944)
++
T Consensus 418 ~~ 419 (448)
T PLN02562 418 ER 419 (448)
T ss_pred HH
Confidence 44
|
|
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0047 Score=69.95 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
.+.|+|-||.+...++++.++-.+.-|...| .||.+..+. .+...+.+.++ +..+++.+.++.| +.+.|.
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 4558899999999999999999888887666 778775321 11111222222 2246788889987 555553
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHh
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 829 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~-~gl~~~v~-------~~~~~y~~~a~~l~ 829 (944)
...+..|| ..+|.+|++||+++|||+|++| ++.+ +.+-++.. +|+.--|. -+.++-.+...++.
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm 406 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWTDQP---MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVM 406 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchhcch---HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHh
Confidence 24445666 3588899999999999999998 3432 33334432 23331111 15677777777777
Q ss_pred cCHHHHHHHHHHH
Q 002273 830 SDVTALANLRMSL 842 (944)
Q Consensus 830 ~d~~~~~~~r~~~ 842 (944)
.|.+. +++|++.
T Consensus 407 ~~~~~-~~~r~~a 418 (449)
T PLN02173 407 EGEKS-KEMKENA 418 (449)
T ss_pred cCChH-HHHHHHH
Confidence 66432 3444433
|
|
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0082 Score=68.93 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=86.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
.+.++|-||.....++++.++...+-|...+...+|....+ ...+.+. ..+|+.+.++.+ +.+.|.
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~- 338 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLC- 338 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhc-
Confidence 35578999998888999999999999999888788865422 0112111 136788888887 555553
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHhh-cCCccccc--------CCHHHHHHHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA--------KNEDEYVQLALQL 828 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~v~--------~~~~~y~~~a~~l 828 (944)
...+..|+ ..+|.+|++||+++|||+|++|- +.+. .+..+.. +|+.--|. -+.++-.+...++
T Consensus 339 h~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~DQ~~---na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~v 412 (459)
T PLN02448 339 HSSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFWDQPL---NSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRF 412 (459)
T ss_pred cCccceEE---ecCchhHHHHHHHcCCCEEeccccccchh---hHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHH
Confidence 23344466 35888899999999999999984 3322 2233322 33332221 2566777777777
Q ss_pred hcCH
Q 002273 829 ASDV 832 (944)
Q Consensus 829 ~~d~ 832 (944)
..|+
T Consensus 413 l~~~ 416 (459)
T PLN02448 413 MDLE 416 (459)
T ss_pred hcCC
Confidence 7664
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.029 Score=53.99 Aligned_cols=117 Identities=24% Similarity=0.144 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 341 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 341 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
+.....++....++... .+...++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554442 345567888999999999999999998654432 336678999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
....... =.+......|.++...|+.++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 013345668999999999999999999999998554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.017 Score=54.89 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=71.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (944)
.+......++.+.++..+++++.+.....-.-... ..-.......++.. ...+...++..+...|+++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 34455566677777777777776632210000000 00111111222222 1346667788888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.009 Score=67.79 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCcEEEc
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 747 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~----~~~~~~~~~~~~~gi~~~rv~~~ 747 (944)
.+.|+|.||.+...++++-++-.+.-|...+...||.+..+.. .+ .+.+.+.++....| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 4568899999999999999999999999999999999853210 00 12234444443333 4556
Q ss_pred cCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
++.| +.+.|. ...+..|+ ..+|-+|++||+++|||+|++|
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEecc
Confidence 7777 556554 34455566 3578889999999999999998
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.32 Score=59.63 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----C---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.-..++..+.|++|+..|+++-...|. ..++.+..|..+..+ | .+++|+..|++. .-.|..|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 345677889999999999999999986 457888888887643 2 466777777763 34566777788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
.+|.++|++++-+++|..+++..|.++......-.+.+.+-.+... +-..|....--++..-|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999887655444444444433332 2234444444555555543
|
|
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0077 Score=65.97 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
++..++.+++....- ++ .++++..|+..+++.|.+. ... ..++|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~----~~~-----------~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA----ADP-----------RPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc----ccc-----------cCCCEEEeecC--hHHHHHH
Confidence 344457777655332 44 4677789988888875431 000 15788887764 2577788
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc-ccccchhHHHhhcCCccccc
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIA 815 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~gl~~~v~ 815 (944)
+..||+++-. +|.||++|++++|+|+|.++-.. .-.+.-+..|+.+|+...+.
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~ 301 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS 301 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc
Confidence 8889999943 77888999999999999988653 44666788899999987764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0017 Score=44.14 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0056 Score=65.31 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCceE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEec
Q 002273 690 NLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 768 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld 768 (944)
...+++..+++...++. ++..+ ++.|.+.. ..+.+++..+.. .+|.+.+.+ .+....+..+|+++-
T Consensus 181 d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~---~~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 181 DPDNLTLKLLSALAESQ---INISITLVTGSSNP---NLDELKKFAKEY----PNIILFIDV---ENMAELMNEADLAIG 247 (279)
T ss_pred CCcCHHHHHHHHHhccc---cCceEEEEECCCCc---CHHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHCCEEEE
Confidence 34556777777665532 33333 34454432 234555554442 478777764 466677888999996
Q ss_pred CCCCCCcccHHHhhhcCCcEEecC
Q 002273 769 TFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 769 ~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
.||+|+.|++++|+|+|.++
T Consensus 248 ----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 248 ----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred ----CCchHHHHHHHcCCCEEEEE
Confidence 47799999999999999864
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00096 Score=69.13 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (944)
-..|...+..|++++|++.|..+++++|.....+...+.+++++++...|+..+..+++++|+...-|-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 002273 132 LVEAAESYHKALSADPS 148 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~ 148 (944)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 99999999999987654
|
|
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.015 Score=66.61 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=92.9
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHH-HHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~-~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+.|+|-||.+...+++..+.-.+.-|...+...||.+..+...... ...+-+.+.+ .+ .+|+.+.++.| +.+.| .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 3478999998889999888888888899988888887532110000 0111111211 12 46777788877 44444 3
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHH-hhcCCccccc--------CCHHHHHHHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA--------KNEDEYVQLALQL 828 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~v~--------~~~~~y~~~a~~l 828 (944)
...+..|+ ..+|-+|++||+++|||+|++| ++.+.. +.++ ..+|+.--+. =+.++..+...++
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N---a~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD---AVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH---HHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 46677776 3588889999999999999998 443322 2223 2335553331 1455666555566
Q ss_pred hcCHHHHHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRD 844 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~ 844 (944)
..++ +-+.+|++.++
T Consensus 427 m~~~-~g~~~r~ra~~ 441 (480)
T PLN02555 427 TVGE-KAAELKQNALK 441 (480)
T ss_pred hcCc-hHHHHHHHHHH
Confidence 6553 23455555444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.91 E-value=1.5 Score=52.06 Aligned_cols=187 Identities=14% Similarity=-0.041 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-----QNACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 121 (944)
.+-...-+.-+...|...+|+...-.+ .+|.. +...-..+.-++..++..- +...++.-| .++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence 455566667777788888888765443 23322 2223333444444454432 333333333 34566677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (944)
.+.......++.+|..+..++...-+. .......++......|.+....|++++|++..+.++..-|.+ ..++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 788888999999999999888765433 333344455556667778888999999999999999886654 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHcCC
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPM----Y--AEAYCNMGVIYKNRGD 240 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~ 240 (944)
..+|.+..-.|++++|..+...+.+.... . ..+....+.++..+|+
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 78888999999999999998888776322 2 2233445677778883
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0023 Score=43.33 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+++.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.022 Score=54.13 Aligned_cols=95 Identities=20% Similarity=0.120 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFSE 107 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (944)
.+...|......++.+.++..+++++...... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788899999999999999864321 23445677778889999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (944)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (944)
++..+|.+..++..+..+|...|+..+|+..|++..+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.02 Score=64.97 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHH--HHHHHHcCCCCCcEEEccCccC
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~--~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
.+.|+|.||++...++.+.++-.+.-|...|...||.+..+... ......+ -+.|.++ + .+|..+.++.|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~P- 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCS- 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCC-
Confidence 34688999999999999999999999999999999987642110 0000000 1112211 2 46777778887
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhh---cCCcccc----cCCHHHHHH
Q 002273 753 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK---VGLKHLI----AKNEDEYVQ 823 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~---~gl~~~v----~~~~~~y~~ 823 (944)
+.+.|.. ..+-.|+ ..+|.+|++||+++|||+|++| ++.+.. +..+.. +|+.-.. .-+.++..+
T Consensus 337 Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n---a~~~~~~~~~G~~~~~~~~~~~~~e~l~~ 409 (455)
T PLN02152 337 QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQPAN---AKLLEEIWKTGVRVRENSEGLVERGEIRR 409 (455)
T ss_pred HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccchHH---HHHHHHHhCceEEeecCcCCcCcHHHHHH
Confidence 5555432 2333455 3588899999999999999998 444322 223322 2332111 114566666
Q ss_pred HHHHHhcCH
Q 002273 824 LALQLASDV 832 (944)
Q Consensus 824 ~a~~l~~d~ 832 (944)
...++..|+
T Consensus 410 av~~vm~~~ 418 (455)
T PLN02152 410 CLEAVMEEK 418 (455)
T ss_pred HHHHHHhhh
Confidence 666666554
|
|
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.013 Score=64.47 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 679 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
..+.+++.++++..... + .+..+..++... ++..+++...+ .+.....+.+.+.+. ++|.+.+..+ +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 45556788888887777 5 555666666665 66666665442 246667776666554 2999998876 7
Q ss_pred HHHHHhcccccEEecCCCCCCcccHH-HhhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 830 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~-eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~ 830 (944)
.+|+.+++.||+++ -+.| +.. ||.++|+|||++. |+...+|.. |-.-+|..|.++-.+..-+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 89999999999998 5666 788 9999999999985 666666664 5555666777777666666666
Q ss_pred CH
Q 002273 831 DV 832 (944)
Q Consensus 831 d~ 832 (944)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 63
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.59 Score=50.32 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
..|...|.++.... ++.+.+.+|.+|.. ..++++|..+|+++.+... ....+.++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 36777777766655 56777888877755 3478888888888887766 77777777 666555
|
|
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.018 Score=66.04 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHH-HHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
...|+|-||++...+++.-+.-.+.-|...+...||.+..+...+.....+ -+-|.+. +...++++.++.| +.+.+
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL- 358 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLIL- 358 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHh-
Confidence 356889999999999998888878889999999999986321111111111 0122221 2245677788887 44444
Q ss_pred hcccccE--EecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 759 AYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 759 ~~~~~Di--~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
...+| |+ ..+|.+|++||+++|||+|++|-
T Consensus 359 --~h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 359 --SHPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred --cCCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 33444 44 35888999999999999999985
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.096 Score=57.02 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=119.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 377 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 377 (944)
..+++.++.+|.+.++|..+....-..-. .+..+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876655432 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHH
Q 002273 378 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP------------------TYAEAYNNLGVLYR 436 (944)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~p------------------~~~~a~~~la~~~~ 436 (944)
+.+++++..+|++...|..+-..... .-.++.....|.++++.-. ....++..+...+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776555443 3357788888888776411 01345677788889
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCh
Q 002273 437 DAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
..|..+.|+..++-.++++=-.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999864333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0014 Score=67.98 Aligned_cols=91 Identities=24% Similarity=0.277 Sum_probs=71.9
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 368 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+..|.+++|++.|..+++++|.....+...+.++.++++...|+.-+..+++++|+...-|-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34577788888888888888888888888888888888888888888888888888777777778888888888888888
Q ss_pred HHHHHhhCCCC
Q 002273 448 YEQCLKIDPDS 458 (944)
Q Consensus 448 ~~~al~l~P~~ 458 (944)
++.+.+++-+-
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 88887776553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0024 Score=43.29 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++++.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777778888888888877777774
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.074 Score=51.29 Aligned_cols=150 Identities=12% Similarity=0.019 Sum_probs=97.9
Q ss_pred HHHHHHhCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHH
Q 002273 54 YANILRSRNKFV---DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYK 127 (944)
Q Consensus 54 ~A~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~ 127 (944)
.|..|++..+.+ +|-..|+++++.- ..+.. +.....++....++.+. .+-..++..+.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v 100 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEV 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 344444444433 6677777766532 12222 44444555555555543 24566788888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (944)
..|++++|+..++.++....+. ...+.+-.+++.+...+|.+++|+..+...-.. .-.+......|.++...|+-
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De----~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDE----NLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred hhccHHHHHHHHHHHHccchhH----HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCch
Confidence 8999999999999888654332 123445677888888999999999888754321 11233456779999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 002273 208 DTALGCYEKAALERPMY 224 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~ 224 (944)
++|...|+++++..++.
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999999886543
|
|
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0084 Score=66.03 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=75.5
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC------------CCCCcc
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF------------PYAGTT 776 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~------------~~~~~~ 776 (944)
.|+.+|.+.|.+... . .. .++|.|.|.++ .++....|.. |+.|-+. .++...
T Consensus 188 ~~~~~l~i~G~g~~~----~---------~~-~~~V~f~G~~~-~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~ 251 (333)
T PRK09814 188 SQGIKLTVFGPNPED----L---------EN-SANISYKGWFD-PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPH 251 (333)
T ss_pred CCCCeEEEECCCccc----c---------cc-CCCeEEecCCC-HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchH
Confidence 578899998866311 1 22 47999999988 5777777776 6554322 355666
Q ss_pred cHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002273 777 TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 845 (944)
Q Consensus 777 t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 845 (944)
-+.++|++|+|||+...... +.+... +-..++++|.++..+....+ +.+.+.+|++..++.
T Consensus 252 K~~~ymA~G~PVI~~~~~~~-----~~~V~~-~~~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~~~~ 312 (333)
T PRK09814 252 KLSLYLAAGLPVIVWSKAAI-----ADFIVE-NGLGFVVDSLEELPEIIDNI--TEEEYQEMVENVKKI 312 (333)
T ss_pred HHHHHHHCCCCEEECCCccH-----HHHHHh-CCceEEeCCHHHHHHHHHhc--CHHHHHHHHHHHHHH
Confidence 68899999999999443211 123333 33344556888888877775 457788888888774
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.98 Score=51.52 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
++..|..++......-.++-|...|-+.-.. +.-. ....+..+ -...+.+-.--|++++|.+.|-.+-+.+
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik-~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIK-LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchh-HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 4566666666666666666666555543211 1100 00000111 0122333334478888888776543221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (944)
.-..++.+.|+|-...++++..-... ..-..++.++|..+..+..+++|.++|.+.
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11234556666666555554321111 112357777788888888888888877765
|
|
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.026 Score=62.43 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=59.0
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCc----ccccchhHHHhhcCCcccccC---CHHHHHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNVGVSLLTKVGLKHLIAK---NEDEYVQLAL 826 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~----~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~ 826 (944)
+.-..|..+|+++ . +|++|+.|++++|+|.|..|=.. .....-+..+...|....+.. +.+...+...
T Consensus 245 ~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~ 320 (352)
T PRK12446 245 ELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVE 320 (352)
T ss_pred hHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHH
Confidence 4556788899999 5 68999999999999999886321 234456778888888766543 5678888888
Q ss_pred HHhcCHHHHH
Q 002273 827 QLASDVTALA 836 (944)
Q Consensus 827 ~l~~d~~~~~ 836 (944)
.+.+|++.++
T Consensus 321 ~ll~~~~~~~ 330 (352)
T PRK12446 321 ELSHNNEKYK 330 (352)
T ss_pred HHHcCHHHHH
Confidence 8888986654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.5 Score=48.49 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
++..|+.......+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 778888888888888889999999999999999999999999988887776 999999999999999999877644
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.6 Score=47.81 Aligned_cols=375 Identities=11% Similarity=0.012 Sum_probs=194.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C-------------
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N------------- 115 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~------------- 115 (944)
+..+....+-.++.+.-...+-..-+..|..+...+..|...++.+++.+|++.+....+.-.. .
T Consensus 48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 3333444455567777777777766778888888899999999999999999988776554111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----ChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHH-----
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYY----- 181 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~----- 181 (944)
...-...+.++...|++.++...+++.+..--. +.+.+.. +-..+|..|.. ....+-+..+|+
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~---~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR---AVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH---HHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 112234678899999999999999988764322 1222111 11112222211 111111111111
Q ss_pred --HHHhh--------CCCC---------------------HHHHHHHHHHHHH--------------cCCHHHHHHHHHH
Q 002273 182 --EALKI--------DPHY---------------------APAYYNLGVVYSE--------------LMQYDTALGCYEK 216 (944)
Q Consensus 182 --~al~~--------~p~~---------------------~~~~~~la~~~~~--------------~g~~~~A~~~~~~ 216 (944)
+.-.. -|.. ..++.+..+.|.. ..+.+++....+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ 284 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA 284 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence 11111 1110 1111111111100 0122222222222
Q ss_pred HHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCC
Q 002273 217 AALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291 (944)
Q Consensus 217 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~ 291 (944)
.... ...-....-.+-....++++..+|.+++.-....+|+.......+ .....+. .....+..
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kll-ls~~~lq---------~Iv~~DD~- 353 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLL-LSPKVLQ---------DIVCEDDE- 353 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhh-cCHHHHH---------HHHhcchH-
Confidence 1111 001112222333334556777777777777777777754221111 0000000 00000000
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIY 367 (944)
Q Consensus 292 ~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (944)
..-+...=+..++.+-..+-+. +.-+..-|.-+.+.|. -++|+.+++.+++..+.+.+..+..-..
T Consensus 354 ---------~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f- 423 (549)
T PF07079_consen 354 ---------SYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF- 423 (549)
T ss_pred ---------HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH-
Confidence 0111122233333333333332 3344555666777776 8889999999998888776433322111
Q ss_pred HHCCCHHHHHH--HHHHHHhh---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 368 KDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNL--GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 368 ~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
-...|.+|+. .+-+.+.+ .| .+.+.-+.| |..++.+|+|.++.-+-.-..++.| .+.++..+
T Consensus 424 -vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLl 501 (549)
T PF07079_consen 424 -VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLL 501 (549)
T ss_pred -HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 1112333322 22222222 22 233444444 4456789999999999999999999 69999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 002273 432 GVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~a 451 (944)
|.++....+|++|..++.+.
T Consensus 502 Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 502 GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999988753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.17 Score=55.79 Aligned_cols=142 Identities=17% Similarity=0.052 Sum_probs=97.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHHH
Q 002273 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGVI 366 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~ 366 (944)
+..+|-+.+++..++.++..+|+.+.|.+++++++-. + ++| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4567888888888888888888888888888777532 1 112 2345556667
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Q 002273 367 YKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~a~~~la~~~~~~g 439 (944)
+.+.|-+..|.++.+-.+.++|. ++- +++.+-....+.++++--++.++....... ..+..-+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 77888888888888888888887 654 444444445566777766666666544211 12356677777777777
Q ss_pred CH---------------HHHHHHHHHHHhhCCC
Q 002273 440 SI---------------SLAIDAYEQCLKIDPD 457 (944)
Q Consensus 440 ~~---------------~eA~~~~~~al~l~P~ 457 (944)
+. ++|...+++|+...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77 7888888888887774
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.55 E-value=2.5 Score=49.71 Aligned_cols=159 Identities=13% Similarity=0.001 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 002273 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES 138 (944)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 138 (944)
+.-++=+.-++.-+..++.+...+..+..++.+.|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 445555666777777888888899999999999999999888888888888888887766554332 34677888889
Q ss_pred HHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 002273 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 139 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~ 211 (944)
|++++.-. .....+...+......+..+...++++.-...|.+++..--. ....+..+-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99998644 344556666666666677777778999999999999876221 2344555556666655566777
Q ss_pred HHHHHHHHhC
Q 002273 212 GCYEKAALER 221 (944)
Q Consensus 212 ~~~~~al~~~ 221 (944)
.++...+...
T Consensus 252 a~~~~el~~~ 261 (881)
T KOG0128|consen 252 ALFVRELKQP 261 (881)
T ss_pred HHHHHHHhcc
Confidence 7777776653
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.15 Score=55.54 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=82.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (944)
Q Consensus 69 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (944)
..|++.++.+|.+.++|+.+....-..-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888876544322 356678899999999999998888888888888888989
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+.+++++..+|++...+..+.. .-......-.+.+....|.++++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999987776543222 111112233566777777766653
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=62.52 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=87.9
Q ss_pred CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 692 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 692 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
.++-|.++++-.++.+..|+-++++...+ ....+.+.+.+...+.... +.+.. .+-...+..+|++|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~~-~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDVS-IVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCCe-EEEcC-----CchHHHHHhCcchh----
Confidence 35569999999999999999999986543 2333335555555555332 33221 22344567799998
Q ss_pred CCCcccHHHhhhcCCcEE-ecCCCcccccchhHH--HhhcCCccccc------------CCHHHHHHHHHHHhcCHHHHH
Q 002273 772 YAGTTTTCESLYMGVPCV-TMAGSVHAHNVGVSL--LTKVGLKHLIA------------KNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 772 ~~~~~t~~eal~~gvPvv-t~~g~~~~~r~~~~~--l~~~gl~~~v~------------~~~~~y~~~a~~l~~d~~~~~ 836 (944)
-..||.|+|+..+|+|.| +.....+--.++--+ ..-+||+.+|+ -+++.-.+.+..+..|++.+.
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHH
Confidence 678999999999999955 444433322222222 12346654442 377888888888999987655
Q ss_pred HHHHHHH
Q 002273 837 NLRMSLR 843 (944)
Q Consensus 837 ~~r~~~~ 843 (944)
......+
T Consensus 346 ~~~~~~~ 352 (373)
T PF02684_consen 346 KQKELFR 352 (373)
T ss_pred HHHHHHH
Confidence 4444443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=3.5 Score=49.33 Aligned_cols=123 Identities=10% Similarity=-0.056 Sum_probs=80.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 330 GVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 330 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
+..-....+.+.|...+.+......-+ ..++..+|.-....+...+|...+..+..... +.........+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333345556677777777654443322 22334445444444335677777776554322 3333444444555888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+++.+...+...-....+.....|.+|+.+...|+.++|..+|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888887776444456688999999999999999999999999854
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=2.8 Score=48.06 Aligned_cols=173 Identities=18% Similarity=0.100 Sum_probs=89.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH----------THCGIL 125 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~ 125 (944)
..+...=..++|+++.+ .+| ++..|..++......-.++-|...|-+.-.. +.- ..- ...+.+
T Consensus 671 ~~Lve~vgledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 671 MNLVEAVGLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHhchHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhH
Confidence 33444455667766543 344 6889999999988888888888777665321 110 011 223444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSE 203 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 203 (944)
-.--|++++|.+.|-.+-+.+- | ...+...|++-...++++..-.-+ .....++.++|..+..
T Consensus 744 ~~~~g~feeaek~yld~drrDL---------A------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRRDL---------A------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred hhhhcchhHhhhhhhccchhhh---------h------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 4445788888777754322110 0 011223344444444443211111 1113345555555555
Q ss_pred cCCHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 204 LMQYDTALGCYEKA----------------------ALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (944)
Q Consensus 204 ~g~~~~A~~~~~~a----------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (944)
+..+++|.++|.+. ...-|++.+.+-.+|..+...|.-++|.+.|-+
T Consensus 809 ~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55555555555443 222355555555666666666666666665544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.014 Score=59.51 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 401 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.++..|+.-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999998887643
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.6 Score=51.98 Aligned_cols=102 Identities=18% Similarity=0.062 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q 002273 47 EGKDALSYANILRSR-------NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (944)
.-++.+..|..++.+ ..+.+|+..|++. ...|.-+--|...|.+|..+|++++-+++|.-+++..|+.|..-
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 345566666555443 2578888888874 44677788899999999999999999999999999999887643
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC
Q 002273 120 THCGILYKDE-----GRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 120 ~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~ 149 (944)
...-.+-+++ .+-..|....--++...|..
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 590 RLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3332222221 12234444445555555554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.2 Score=55.19 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=64.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHHH
Q 002273 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------------RP------------MY---AEAYCNMGV 233 (944)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~ 233 (944)
.++.+|-+.+++..++.++..+|+.+.|.+.+++++-. ++ .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34679999999999999999999999999999998631 11 12 135566677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Q 002273 234 IYKNRGDLESAIACYERCLAVSPN-FEIAKNNMA 266 (944)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 266 (944)
.+.+.|-+..|+++.+-.+.++|. ++-......
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~I 145 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFI 145 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 788899999999999999999998 655443333
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.2 Score=49.91 Aligned_cols=298 Identities=12% Similarity=-0.009 Sum_probs=159.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
+.-..|+-+++...+-++-...+-...........+......+...++. +...+.+.......|.++......+..+.
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~ 278 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILS 278 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHH
Confidence 3444566667766666554443222222111122223333333333333 44445555556668888888889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHhhhhhhhh
Q 002273 203 ELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKTYGR 279 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~l~~~~~~~~~~ 279 (944)
..|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...+....+.+.-....+..++ .++..-...
T Consensus 279 ~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~---- 354 (546)
T KOG3783|consen 279 IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEV---- 354 (546)
T ss_pred HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHH----
Confidence 999988888888887761111 2335677888888899999999998888776544333333333 333221111
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH---HHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA---LYYNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a---l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 353 (944)
.....++-+++..+.+.. +...|++.. .....+.-+...+. .+
T Consensus 355 ------------------~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~ 403 (546)
T KOG3783|consen 355 ------------------NQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LN 403 (546)
T ss_pred ------------------HHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------cc
Confidence 011112333333332222 222222111 11111111111110 11
Q ss_pred CCCHH--HHHHHHHHHHHCC--CHHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002273 354 PHCAE--ACNNLGVIYKDRD--NLDKAVECYQMALS---I-KPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--- 421 (944)
Q Consensus 354 p~~~~--~~~~la~~~~~~g--~~~~A~~~~~~al~---~-~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~--- 421 (944)
+.... -++.++.++.... ...+.. -++..++ . ++++. --++.+|.++..+|+...|..+|+..++..
T Consensus 404 ~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~ 482 (546)
T KOG3783|consen 404 ASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR 482 (546)
T ss_pred ccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 11111 1233333333211 122222 1111111 1 22221 245667999999999999999999887541
Q ss_pred CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 002273 422 PT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 422 p~----~~~a~~~la~~~~~~g~-~~eA~~~~~~al~l~P~~ 458 (944)
.+ .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus 483 ~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 483 TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 11 27799999999999999 999999999998877654
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.035 Score=48.46 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (944)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888765 566777888765542 2358999999999999998889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSA 145 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (944)
+.+|.-+-....|+++....++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99988877777888888888887765
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.072 Score=57.25 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=122.3
Q ss_pred hHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccC
Q 002273 585 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 664 (944)
Q Consensus 585 i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~ 664 (944)
+.....|++|=..+.|...-+.+=.....++.+..++.|..- ...+|++|+-.+=.++ -..+++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRLP-----RGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCcC-----CCCceEecccCCCcCC
Confidence 445678999877666653333333333566678888999765 8899999974332221 2356677766543333
Q ss_pred CCCCCCCC----CCCCC--CCCCCeEEEecCCCCcCCHH----HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHH
Q 002273 665 PSPEAGPV----CPTPA--LTNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 734 (944)
Q Consensus 665 ~~~~~~~~----~~~~~--~~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 734 (944)
|....... ..... -+-..|.+|--++.++++++ +++...++.+..+ ..++|....-..+.+...|.+.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 32111100 00111 23345778888899999998 4455566677766 56666554444556666666655
Q ss_pred HHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccc
Q 002273 735 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 800 (944)
Q Consensus 735 ~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~ 800 (944)
. +...+.+....+ ..-|++.+..+|.++-|--- -.=..||++.|+||..++-+.-.+|+
T Consensus 206 ~----~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 K----DNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred c----CCCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4 235663334444 34689999999999854321 22367999999999887655433444
|
The function of this family is unknown. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.011 Score=39.60 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 427 a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5566666666666666666666666666665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0058 Score=42.08 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+.+||.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666667777777777777664443
|
|
| >COG4370 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0023 Score=64.93 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=100.1
Q ss_pred HHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccH
Q 002273 699 LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT 778 (944)
Q Consensus 699 ~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~ 778 (944)
+..|++|...+|--.||-.. .++..+-....+|-+.-+++|. ++.|-..++.+|++| =-.||.+
T Consensus 260 vvfw~ai~~~lpl~~l~~l~-------e~~gWq~~ad~~~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAt 323 (412)
T COG4370 260 VVFWAAIAPELPLLLLWTLE-------ERQGWQPLADRFGKDNCSLWLS-----QQSFADILHAADAAL----GMAGTAT 323 (412)
T ss_pred HHHHhccCcCCCHHHHHHHH-------HhcCcchhhhhhccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchH
Confidence 56788887777644444221 1111111112244444556653 567788888899987 3578999
Q ss_pred HHhhhcCCcEEecCCCc--ccccchhHHHhhcCCcccccCCHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002273 779 CESLYMGVPCVTMAGSV--HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQ 855 (944)
Q Consensus 779 ~eal~~gvPvvt~~g~~--~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~ 855 (944)
=++.-.|+|||.+||.. +.--.+..-.+-+|+.=.....++.-...+++ +..|++++.++|..-++|+-+ +
T Consensus 324 EQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq------a 397 (412)
T COG4370 324 EQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ------A 397 (412)
T ss_pred HHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC------c
Confidence 99999999999999853 33333444457778877667777766777777 999999999999998888742 2
Q ss_pred HHHHHHHHHHHHHH
Q 002273 856 NFALGLESTYRNMW 869 (944)
Q Consensus 856 ~~~~~~e~~~~~~~ 869 (944)
+-++++-+...+||
T Consensus 398 Gaa~rIAe~l~e~a 411 (412)
T COG4370 398 GAARRIAEELGEMA 411 (412)
T ss_pred chHHHHHHHHHHhc
Confidence 45666666666665
|
|
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.053 Score=59.34 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc-ccccchhHHHhhcCCcccccCCH
Q 002273 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNE 818 (944)
Q Consensus 741 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~gl~~~v~~~~ 818 (944)
+++|.+.+..+ .++...+..||+++-. +|.+|++||+++|+|+|..|-.. +-...-+-.|...|+...+..+.
T Consensus 228 ~~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 46888887653 5788888999999943 56678999999999999988643 24556777888889886664443
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.014 Score=39.45 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+++.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555444
|
... |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.025 Score=57.63 Aligned_cols=73 Identities=26% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3445555666677777777777777777777777777777766666777777777777777777766665544
|
|
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.21 Score=55.50 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHH
Q 002273 725 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 804 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~ 804 (944)
..++.+.+.+. + ..+|.+.+..+ ..+++.++..||+++ -+++...-||..+|+|||++.+ ...+|-.
T Consensus 249 ~i~~~i~~~~~--~--~~~v~l~~~l~-~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~--- 315 (365)
T TIGR03568 249 IINEAIEEYVN--E--HPNFRLFKSLG-QERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR--- 315 (365)
T ss_pred HHHHHHHHHhc--C--CCCEEEECCCC-hHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh---
Confidence 44555544421 1 36799999877 799999999999999 4443555899999999999753 3333322
Q ss_pred HhhcCCccc-ccCCHHHHHHHHHHHhcCH
Q 002273 805 LTKVGLKHL-IAKNEDEYVQLALQLASDV 832 (944)
Q Consensus 805 l~~~gl~~~-v~~~~~~y~~~a~~l~~d~ 832 (944)
|-.-+ |..+.++-++.+.+ +.++
T Consensus 316 ----g~nvl~vg~~~~~I~~a~~~-~~~~ 339 (365)
T TIGR03568 316 ----ADSVIDVDPDKEEIVKAIEK-LLDP 339 (365)
T ss_pred ----cCeEEEeCCCHHHHHHHHHH-HhCh
Confidence 33334 55688888877776 4554
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.021 Score=64.77 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh---HHHhhcCCc-----ccccCCH-------
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTKVGLK-----HLIAKNE------- 818 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~---~~l~~~gl~-----~~v~~~~------- 818 (944)
+|-....-||+.+=|.-| .=|-|-+|+.+||||.|| ++.++ -+...++-+ ..|-+..
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsIT-------TnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v 534 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSIT-------TNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESV 534 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEE-------ETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceee-------ccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHH
Confidence 455556779999888877 889999999999999999 44431 112222211 1222333
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002273 819 DEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873 (944)
Q Consensus 819 ~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 873 (944)
+++.+....++. +...+..+|.+.++. |.++||+.|...++++|..+.++-.
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 333333334333 344455555544322 7889999999999999998887653
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.31 Score=57.48 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=103.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHh--Hc--CCceEEEecCCCCCHH----HHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCDS----VRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~~~----~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
+.+++|...|+ +|..+-++....++++ .. .+.++++.|++...+. ..+.+....++-.+ ++||+|+..-
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~Y 466 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLENY 466 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcCC
Confidence 44567777766 8988888888777764 21 3578888877643322 34444443333223 5799997653
Q ss_pred cCcHHHHH--hcccccEEec-CCC-C-CCcccHHHhhhcCCcEEecCC-CcccccchhHHHhhcCCcccc----------
Q 002273 751 LLNHDHMQ--AYSLMDISLD-TFP-Y-AGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLTKVGLKHLI---------- 814 (944)
Q Consensus 751 ~~~~~~~~--~~~~~Di~Ld-~~~-~-~~~~t~~eal~~gvPvvt~~g-~~~~~r~~~~~l~~~gl~~~v---------- 814 (944)
..-++ .+..+||+|- |.. + ..||+-+=||.-|++.+|.-. -.--.-- |-..|.
T Consensus 467 ---d~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~--------~~nGf~f~~~~~~~~~ 535 (601)
T TIGR02094 467 ---DINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD--------GDNGWAIGDGEEYDDE 535 (601)
T ss_pred ---CHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC--------CCcEEEECCCcccccc
Confidence 33333 5688999999 664 7 889999999999999987542 1111000 111221
Q ss_pred ----cCCHHHHHH---HHH-HHhcC-HHH--HHHHHHHHHHHhhc-CCCCChHHHHHHHHHHH
Q 002273 815 ----AKNEDEYVQ---LAL-QLASD-VTA--LANLRMSLRDLMSK-SPVCDGQNFALGLESTY 865 (944)
Q Consensus 815 ----~~~~~~y~~---~a~-~l~~d-~~~--~~~~r~~~~~~~~~-~~~~~~~~~~~~~e~~~ 865 (944)
..|.+++.+ .++ .+-.| ++. -..+.+..+..|.+ .|.|++.++++++.+.|
T Consensus 536 ~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 536 EEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 134444333 334 44433 221 12344444455543 56899999999998876
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.31 Score=50.96 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHc-CCceEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAV-PNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~-p~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.+|+-.-|+..+-+ .-+++...|.+.. .+.++++ .+-|.+++.-++++++...++.- ++++..+.....-.+|+
T Consensus 144 ~~~~tIlvGNSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 144 AGKMTILVGNSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYL 221 (322)
T ss_pred CCceEEEEeCCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHH
Confidence 3445554444443333 3444445554443 3445544 34444677888899888888764 47777654444468999
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~ 836 (944)
+.++.|||..=-|.= -|--|+|=.+.+|+|||...-.+ .-..|...|++=+-..+.= |....+
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~-----fwqdl~e~gv~Vlf~~d~L-----------~~~~v~ 285 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNP-----FWQDLTEQGLPVLFTGDDL-----------DEDIVR 285 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCc-----hHHHHHhCCCeEEecCCcc-----------cHHHHH
Confidence 999999999866654 44457888999999999844333 2345778888875322211 222222
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.++++...-.+.-.|..+.++..+.++|+.
T Consensus 286 e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 286 EAQRQLASVDKNIIAFFSPNYLQGWRNALAI 316 (322)
T ss_pred HHHHHHHhhCcceeeecCHhHHHHHHHHHHH
Confidence 3333332221112227777877777777754
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=6.2 Score=46.62 Aligned_cols=224 Identities=11% Similarity=0.003 Sum_probs=144.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~ 118 (944)
...+++......+-..+...|++++-...-.++.+..|..+..|.....-.. ..++-.++...|++++. +-+++..
T Consensus 107 ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~i 185 (881)
T KOG0128|consen 107 AINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPI 185 (881)
T ss_pred cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchH
Confidence 3445666777888889999999998888888888888888888877665443 33677788889999886 3344445
Q ss_pred HHHHHHHH-------HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 119 HTHCGILY-------KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 119 ~~~la~~~-------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
|...+... ...++++.-...|.+++..-.....--..+...+...-..+...-..++-+.++...+... .+.
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~ 264 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDE 264 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chh
Confidence 54444443 4456788888899999876443333223334455556666666666677888888777654 221
Q ss_pred H----HHHHHH--H-HHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 192 P----AYYNLG--V-VYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 192 ~----~~~~la--~-~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (944)
+ .+.... . ......+++.|.+-+.+. ++..+.....|..+.......|+...-...+++++...+.
T Consensus 265 ~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~ 344 (881)
T KOG0128|consen 265 DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVL 344 (881)
T ss_pred hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccc
Confidence 1 111111 1 112344555555554433 3344444455666667777788888888888888888877
Q ss_pred cHHHHHHHHH
Q 002273 258 FEIAKNNMAI 267 (944)
Q Consensus 258 ~~~~~~~la~ 267 (944)
+...|...+.
T Consensus 345 ~~~~wi~y~~ 354 (881)
T KOG0128|consen 345 DRALWIGYGV 354 (881)
T ss_pred cHHHHhhhhh
Confidence 7777666553
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.7 Score=48.79 Aligned_cols=80 Identities=6% Similarity=-0.075 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 103 DSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
+.+....+..|+++......+..+...|+.+.|+..++..+. + .-.......++.+|.++.-+.+|..|-..+..
T Consensus 254 ~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~---~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 254 KALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--I---RMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333444566655555566666666665555555555544 1 11222233444555555555555555555555
Q ss_pred HHhhC
Q 002273 183 ALKID 187 (944)
Q Consensus 183 al~~~ 187 (944)
..+.+
T Consensus 329 L~des 333 (546)
T KOG3783|consen 329 LRDES 333 (546)
T ss_pred HHhhh
Confidence 44443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.049 Score=58.89 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=105.0
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
..|+.-.|-.-+..++...|.++......+.+....|.|+.|.+.+..+-..-..-..+...+-+-...+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 34666777777777777777777777777778888888888877776555443333444555556677888889888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCC
Q 002273 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 476 (944)
+-.+...-+++++..--+..-..+|-+++|..++++.+.++|....-+.|.+-...|..+|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 88877766777777666666777888899999999999999887777777777777777765
|
|
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.72 Score=50.43 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=97.2
Q ss_pred CCeEEEecCCCCcCCHH-HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCC------------cEEEc
Q 002273 681 GFITFGSFNNLAKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL------------RVDLL 747 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~------------rv~~~ 747 (944)
..++++|. ....++ .++++.+++++.||..|+++-.. ++--..+.+.+.++|+... .|.+.
T Consensus 232 ~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~ 305 (419)
T COG1519 232 PVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLG 305 (419)
T ss_pred ceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEE
Confidence 34444443 566666 88999999999999999998432 2444566677777776432 33332
Q ss_pred cCccCcHHHHHhcccccEEec--CCCCCCcccHHHhhhcCCcEEecCCCccc-ccchhHHHhhcCCcccccCCHHHHHHH
Q 002273 748 PLILLNHDHMQAYSLMDISLD--TFPYAGTTTTCESLYMGVPCVTMAGSVHA-HNVGVSLLTKVGLKHLIAKNEDEYVQL 824 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld--~~~~~~~~t~~eal~~gvPvvt~~g~~~~-~r~~~~~l~~~gl~~~v~~~~~~y~~~ 824 (944)
.. -.+....|.++||+.- ||--.||--.+|++++|+|||+ |.... -+..+-.|...|-. ++++| ++.+..
T Consensus 306 Dt---mGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~--Gp~~~Nf~ei~~~l~~~ga~-~~v~~-~~~l~~ 378 (419)
T COG1519 306 DT---MGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF--GPYTFNFSDIAERLLQAGAG-LQVED-ADLLAK 378 (419)
T ss_pred ec---HhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEe--CCccccHHHHHHHHHhcCCe-EEECC-HHHHHH
Confidence 22 3578889999999853 3422677779999999999999 33221 11122222222322 34566 555666
Q ss_pred HHHHh-cCHHHHHHHHHHHHHHhh
Q 002273 825 ALQLA-SDVTALANLRMSLRDLMS 847 (944)
Q Consensus 825 a~~l~-~d~~~~~~~r~~~~~~~~ 847 (944)
++.+. .|++.+.++++...+-+.
T Consensus 379 ~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 379 AVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 65554 458888888777666544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.25 Score=46.64 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
-...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..++.+.+..|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADP 147 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p 147 (944)
..+|+.+ =..+-+++++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 9888754 2223344444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.03 Score=37.38 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.58 Score=52.73 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
+...-++..+...+.+++.+++.+.. +...+...+....+...+..++..+|++..+..+|+......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444677777777788888877544 4666777888889999999999999999999999999988888776666655
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 415 EK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 415 ~~-al~~~p~~~~a~~~l------a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
.. +....|++.+....+ ++....+|+..++....+++..+.|.++.+...++.+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 888889887766555 8889999999999999999999999997776665444
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.21 Score=57.62 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=78.3
Q ss_pred CcCCHHHHHHHH-HHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC
Q 002273 692 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 770 (944)
Q Consensus 692 ~K~~~~~~~~~~-~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~ 770 (944)
.++-|.++++-. +.++ ++.++++-. ..+..++.+.+..+..++ -.+.+... ... ...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp~---a~~~~~~~i~~~~~~~~~--~~~~ii~~---~~~-~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVSS---ANPKYDHLILEVLQQEGC--LHSHIVPS---QFR-YELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEec---CchhhHHHHHHHHhhcCC--CCeEEecC---cch-HHHHHhcCeee---
Confidence 344466666654 1222 244554422 222334555555544332 11223221 112 35667899999
Q ss_pred CCCCcccHHHhhhcCCcEEe-cCCCcccccchhHHHh----hcCC----------cccc----cCCHHHHHHHHHHHhcC
Q 002273 771 PYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLT----KVGL----------KHLI----AKNEDEYVQLALQLASD 831 (944)
Q Consensus 771 ~~~~~~t~~eal~~gvPvvt-~~g~~~~~r~~~~~l~----~~gl----------~~~v----~~~~~~y~~~a~~l~~d 831 (944)
-..||.|+|++.+|+|.|. ..-..+--.++--+++ .+|| ||++ .-+++.-.+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 6779999999999999554 4433222222222222 2333 5777 3356666654 699999
Q ss_pred HHHHHHHHHHHHHHh
Q 002273 832 VTALANLRMSLRDLM 846 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~ 846 (944)
++.++++++.+++..
T Consensus 572 ~~~r~~~~~~l~~lr 586 (608)
T PRK01021 572 SQSKEKQKDACRDLY 586 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888888887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.8 Score=47.67 Aligned_cols=48 Identities=8% Similarity=-0.104 Sum_probs=24.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (944)
..+...|.+++|...----+. ..-|-.+|...+..=+++-|.+.|.++
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345666776666543211111 122445555555555666666666554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.048 Score=37.45 Aligned_cols=23 Identities=43% Similarity=0.824 Sum_probs=10.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
+.++|.+|...|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.7 Score=43.99 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--HHH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF--SQS 393 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 393 (944)
.+|.+|+..++|.+-.+.+++.-.... .-.++|..-...|-.+++-.+-...|++++.+...- +.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 456666666655555555444433211 012344444455556666666666666666554322 111
Q ss_pred H----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 394 L----NNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 394 ~----~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
. -.=|..+.+.|++++|-.-|=+|.+.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 11234455566666666665555554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.21 Score=42.70 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445566666666666666667776666777777777666666666655
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.22 Score=58.30 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=86.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCce-EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 682 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 682 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.++|-||+... .+..+.....+..+...|+-. +|..... .... +.+.+... .+..|++.++.| +.+.+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~~~----~~~~~~~~--~~~nV~~~~W~P-Q~~ll 349 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-DSIY----FPEGLPNR--GRGNVVLSKWAP-QNDLL 349 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-cchh----hhhcCCCC--CcCceEEecCCC-cHHHh
Confidence 46688888776 899999999999999987776 4554332 1111 11111111 234688889988 56666
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcc-cccC--CHHHHHHHHHHHhcCH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKH-LIAK--NEDEYVQLALQLASDV 832 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~-~v~~--~~~~y~~~a~~l~~d~ 832 (944)
.....+..|+ ..+|=++|+|+++.|||+|++| |+.+.. +-++..-|... ++.. +..+.......+..++
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 3333344444 3467778899999999999876 775542 22333333322 2222 2222445555566666
Q ss_pred HHHHHHHHHH
Q 002273 833 TALANLRMSL 842 (944)
Q Consensus 833 ~~~~~~r~~~ 842 (944)
+..+..++-.
T Consensus 424 ~y~~~~~~l~ 433 (496)
T KOG1192|consen 424 EYKEAAKRLS 433 (496)
T ss_pred HHHHHHHHHH
Confidence 5555544433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.41 Score=45.17 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
.+..+..+-...++.+++...+.-.--+.|+.++.-..-|+++...|++.+|+..|+.+.+..|..+.+.-.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 33444445555666677777776666677777777777777777777777777777777666676676666777777777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 002273 439 GSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P 456 (944)
|+.+ =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 6643 2333344555444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.058 Score=40.57 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 427 a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.++.+|..+.++|+|++|..+.+.+|+++|++.++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566666677777777777777777777777665543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.22 Score=42.51 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4677899999999999999999999999999999999999999998765 55666666677777665444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=50.07 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAAL--------------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF- 258 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 258 (944)
|..||.-....=+++-|.+.|.+.-. .....+. -..++.++...|++.+|.+.|++.-..+..-
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 45556655566666677666665422 1111122 2356777788888888888887642211100
Q ss_pred ---HHHHHHHHHHHHHhhhhhhhhHHHHHhh---cCCCCCchhHHHhhhcCCHHHHHHHHH----------HHHHhCCCC
Q 002273 259 ---EIAKNNMAIALTDLGTKTYGRALLLFRL---NGSNFQSPFFELVKLEGDINQGVAYYK----------KALYYNWHY 322 (944)
Q Consensus 259 ---~~~~~~la~~l~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~A~~~~~----------~al~~~p~~ 322 (944)
..-.+.++.-+...|..+..+.+...+. .+.......++++...|+..+|+.+.- -+-+++...
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 0012223333333343333333322211 122223345566677777777765431 111222233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
.+.+..++..+.....+.-|.+.|++.-. ...+..++...+++.+|...-++--+.- +++++-.|+.+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence 34444455555555555555555544321 1123344455666666655544322221 335666666666
Q ss_pred HcCCHHHHHHHHHHH
Q 002273 403 VQGKMDAAAEMIEKA 417 (944)
Q Consensus 403 ~~g~~~~A~~~l~~a 417 (944)
+..++++|.+.|.+|
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.8 Score=38.91 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C--HHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~ 121 (944)
....|..|..+.+.++.++|+.-|..+-+..-.+ .-+.+..+.+..+.|+...|+..|.++-...|- - -.+...
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3455677777888888899998888876654433 456677788888888888888888887654331 1 124455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (944)
-+.++...|-|++-....+..-. +.++ ....+-..||...++.|++.+|.+.|.+... +...+....+.+.+.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~--d~n~----mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAG--DGNP----MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccC--CCCh----hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 56667777877766555443211 1111 1122334456666667777777777766554 333444444444443
|
|
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.72 Score=55.71 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCceEEEecCCCCCHHHHHHHHHHH----HHcCCCCCcEEEccCc
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSVRHRFLSTL----EQLGLESLRVDLLPLI 750 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~~~~~~~~~~~~~----~~~gi~~~rv~~~~~~ 750 (944)
+.+|+|-.-|. +|...-++....++.+-+ ...++++.|++...+..-..+.+.+ +.-.+ ++||+|++.
T Consensus 477 d~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfle~- 554 (778)
T cd04299 477 NVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFLED- 554 (778)
T ss_pred CccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEEcC-
Confidence 44566665555 888877777765554311 2367888776654333333333333 32244 569999865
Q ss_pred cCcHHHHH--hcccccEEecCCC--C-CCcccHHHhhhcCCcEEecC
Q 002273 751 LLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 751 ~~~~~~~~--~~~~~Di~Ld~~~--~-~~~~t~~eal~~gvPvvt~~ 792 (944)
...-++ .+.-|||.|.|+- + ..||+-+=|+.-|++.++.-
T Consensus 555 --Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvl 599 (778)
T cd04299 555 --YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVL 599 (778)
T ss_pred --CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecc
Confidence 334444 4588999999994 7 88999999999999988643
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.32 Score=49.25 Aligned_cols=92 Identities=25% Similarity=0.232 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCC------CHHHHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ-------DGIQKYYEALKIDPH------YAPAYY 195 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~~~~ 195 (944)
...+++|++.|.-|+-...-........|.++..++.+|...++.+ .|++.|+++++.... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456666666665554321111111245666777777777777744 344444444433211 234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~ 220 (944)
.+|.++.+.|++++|...|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 6666677777777777777666654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.34 Score=50.76 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3445555556666666666666666666666666666666666666666666666666666665554443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.1 Score=39.40 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred HCCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCH----
Q 002273 369 DRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA---- 425 (944)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~---- 425 (944)
..|-|++|...+.++.+.... +.-++..|+..+..+|+|++++...++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 345566666666666554221 122455566666666666666555555543 344433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
.+-++.+..+..+|+.++|+..|+.+-+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34466778888888888888888877553
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.43 Score=49.95 Aligned_cols=71 Identities=18% Similarity=0.084 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555666677777777777777777777777666677777777777777777777777777766655433
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.057 Score=53.04 Aligned_cols=67 Identities=28% Similarity=0.510 Sum_probs=58.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.......
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k 69 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK 69 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence 3456778999999999999999999999999999999999999999999999999999987654443
|
|
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.38 Score=50.41 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=93.4
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-ccCccCcHHHHHhcccccEE--ecCCCCCC--cccHHHhhh
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHMQAYSLMDIS--LDTFPYAG--TTTTCESLY 783 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~~~~~~~Di~--Ld~~~~~~--~~t~~eal~ 783 (944)
.|+-..++-|+| +.++...+...+.-. .+|.| .++.. -+||-..+..||+. |.|+.-|= ..-.+|-.-
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~--~~v~~~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFG 363 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNL--QHVQVCTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFG 363 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhcc--cceeeeecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhc
Confidence 477777777776 788888888888877 45554 35544 68999999999975 55543322 346899999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 002273 784 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 845 (944)
Q Consensus 784 ~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~----d~~~~~~~r~~~~~~ 845 (944)
||+||+++.=.+.-. |-.-|-..+|..|-++..+...-|-+ +...+.+++..+++.
T Consensus 364 cglPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 364 CGLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 999999965433322 33347788999999999999999998 899999999998876
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.24 Score=37.25 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
.++.+|..+.++|+|++|..+.+.+++..|++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45566666666666666666666666666666555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.063 Score=34.98 Aligned_cols=32 Identities=41% Similarity=0.690 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777776664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.74 Score=56.84 Aligned_cols=168 Identities=16% Similarity=0.107 Sum_probs=113.0
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Q 002273 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (944)
.+.+..++.+......|.+.+|.+ ++... -...|.....+..++..+...+++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 466778888888999999998888 55533 3457888999999999999999999999998887644
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
.|+....+..++...+..++...|...+.++..+ .|+.+.. +.+..+++.++...++++.|+++.+.|+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2455667888888888888888888888877664 2222222 33345555555556667777777766665
Q ss_pred hCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 186 IDPH--------YAPAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 186 ~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
.... ....+..+++.+...+++..|+...+..
T Consensus 1086 ~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1086 KNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 4211 2333444444444445444444444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.4 Score=39.26 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=94.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHcCC
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQGK 406 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~ 406 (944)
+...++.++|+..|...-+-.-.. .-+.+..+.+..+.|+...|+..|.++-...+- - -.+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445678888888888877664433 346677788889999999999999988765432 1 1245556777888899
Q ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 407 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 407 ~~~A~~~l~~al-~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|++-....+..- +.+|-...+...||..-.+.|++.+|.+.|.+... +...+....++
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 888766655432 22444567788899999999999999999999887 44444443343
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.27 E-value=8.6 Score=40.67 Aligned_cols=205 Identities=14% Similarity=0.049 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCC--C
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVK---LDP--Q 114 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p--~ 114 (944)
..+..+......+++++++..|.+++.. .|.+ ......++..+.+.|+.++-.+.....-. .-+ .
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3477888888899999999999999884 2221 34667899999999998876555443322 111 1
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----C--
Q 002273 115 NACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D-- 187 (944)
Q Consensus 115 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~-- 187 (944)
.......+-... ...+..+.-+..+...++-....... ...-.+-..+...|...++|.+|+......+.. +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt-FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK 164 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT-FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDK 164 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 111111122111 12233344444444444432222111 111223445677888899999999988776654 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
+.-.+++..-...|+...+..+|...+..+-... |. ....-..-|.++....+|..|..+|-.+++-.
T Consensus 165 ~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 165 ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 2235667777888999999999988887775432 11 11222334666777789999999998888754
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.71 Score=40.47 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 232 GVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
+.-++..|++-+|++..+..+...+++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 3445556666666666666665555544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=12 Score=41.41 Aligned_cols=137 Identities=11% Similarity=0.004 Sum_probs=104.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
..+..-.........|+.-.|-+....++...|.++......+.+....|+|+.|...+..+-..-.....+...+-...
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 33444444556678899999999999999999999999999999999999999999888766554444445566666778
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
..+|++++|.....-.+...-++++. ..--+......|-++++...+++.+.++|..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88999999999888887765555543 2222333445678899999999999887653
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.9 Score=41.55 Aligned_cols=261 Identities=17% Similarity=0.139 Sum_probs=128.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHH-HHHHHHHHHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DPHYAP-AYYNLGVVYS 202 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~-~~~~la~~~~ 202 (944)
..+.++|+..|++++++.+...+-- -.++..+..+.+.++++++-+..|.+.+.. ..+..+ ....+-..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWG---FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWG---FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhH---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 3477888888888888877654421 123556667777788888888888776643 111111 1111111111
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Q 002273 203 ELMQYDTALGCYEKAALE--RPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~--~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 276 (944)
...+.+--...|+..++. +..+. ..-..+|.+|+..++|.+-.+.+++.-....... |..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed-------------Ged- 182 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED-------------GED- 182 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc-------------Cch-
Confidence 222222223333332221 11111 2234567777777777666555555433221100 000
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (944)
+.. ....-.++|..-...|-.+++-.+-..+|++++.+...-
T Consensus 183 ---------------------------D~k-----------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 183 ---------------------------DQK-----------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred ---------------------------hhh-----------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 000 000112333444456666666666677777777664332
Q ss_pred --HHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----CHH--HHHHHHHHHHHcCC----HHHHHHHHHHHHH
Q 002273 357 --AEAC----NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQ--SLNNLGVVYTVQGK----MDAAAEMIEKAIA 419 (944)
Q Consensus 357 --~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~--~~~~la~~~~~~g~----~~~A~~~l~~al~ 419 (944)
+.+. -.=|..+.+.|++++|-..|-+|++.... ... -+.-+|..+.+.|= -.+|..
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP------- 297 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP------- 297 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC-------
Confidence 2221 12245567778888888888888765322 222 23445555555441 111111
Q ss_pred hCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 420 ANPTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 420 ~~p~~~~--a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
..++++ +..++..+|... + +..|++.++.+.+
T Consensus 298 -yKNdPEIlAMTnlv~aYQ~N-d----I~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 298 -YKNDPEILAMTNLVAAYQNN-D----IIEFERILKSNRS 331 (440)
T ss_pred -CCCCHHHHHHHHHHHHHhcc-c----HHHHHHHHHhhhc
Confidence 123344 455666666543 2 4556666665443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.34 Score=49.02 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 392 QSLNNLGVVYTVQGKMDA-------AAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~-------A~~~l~~al~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
..+..+|++|...|+.+. |++.|+++++... +...+.+.+|.+..+.|++++|..+|.+++...-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 345556666666665433 4444455544321 125678889999999999999999999988754443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.72 E-value=1.4 Score=38.81 Aligned_cols=95 Identities=20% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC---CC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------c
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKD---SG---------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (944)
.+..|...+..|-|++|...++++.+.. |. ++.++..++..+..+|+|++++...++++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3556777888999999999999998853 21 356778899999999999998888887775 3
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002273 112 DPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSA 145 (944)
Q Consensus 112 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (944)
+.+.. .+-+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44433 34567788899999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.45 Score=51.33 Aligned_cols=139 Identities=18% Similarity=0.240 Sum_probs=80.0
Q ss_pred CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 692 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 692 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
-++-|-+.++..++..+.|+-++++-..+ ..-++++..........-.+++.. ..-...+..||++|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILID-----GEKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecC-----chHHHHHHHhhHHH----
Confidence 45667888998898889999999996543 232334433333222111233322 23345667799998
Q ss_pred CCCcccHHHhhhcCCc-EEecCCCcccccchhHH--HhhcCCcccccC------------CHHHHHHHHHHHhcCHHHHH
Q 002273 772 YAGTTTTCESLYMGVP-CVTMAGSVHAHNVGVSL--LTKVGLKHLIAK------------NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 772 ~~~~~t~~eal~~gvP-vvt~~g~~~~~r~~~~~--l~~~gl~~~v~~------------~~~~y~~~a~~l~~d~~~~~ 836 (944)
-..||.|+|++.+|+| ||+..=..+-..++--+ +..++||.+|+. +++...+....|..|...++
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 5679999999999999 55543332222111111 113456655544 34555555666666664545
Q ss_pred HHHHHHH
Q 002273 837 NLRMSLR 843 (944)
Q Consensus 837 ~~r~~~~ 843 (944)
++.+..+
T Consensus 350 ~~~~~~~ 356 (381)
T COG0763 350 ALKEKFR 356 (381)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.1 Score=55.40 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEccCccCcHHHHHhcccccEEecCCCC
Q 002273 694 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 772 (944)
Q Consensus 694 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~ 772 (944)
....+.++...+++..|+..|+++..|........ ..+... +. ..++.+..... ...++..||.++ -
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~----~~~Ll~~s~~Vv----t 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNL-PNVVIIDDDVN----LYELLEQSDAVV----T 205 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcC-CCeEEECCCCC----HHHHHHhCCEEE----E
Confidence 44567788888899999999999977631111111 222222 22 34444444332 334456688887 5
Q ss_pred CCcccHHHhhhcCCcEEec
Q 002273 773 AGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 773 ~~~~t~~eal~~gvPvvt~ 791 (944)
-.+|+.+|||.+|+||||+
T Consensus 206 inStvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 206 INSTVGLEALLHGKPVIVF 224 (269)
T ss_pred ECCHHHHHHHHcCCceEEe
Confidence 6789999999999999994
|
Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.52 E-value=12 Score=39.70 Aligned_cols=166 Identities=17% Similarity=0.106 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
...+......++.++++..+...+.. .|.+ ......++..|.+.|+.++-.......-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 45555666677788899999888873 2222 24577899999999998876655544332211111110
Q ss_pred HHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--C
Q 002273 156 LAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE----R--P 222 (944)
Q Consensus 156 la~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p 222 (944)
.+.+...+-. +....+....-+..+.+.++..... ...-..+..+|...++|.+|+......+.. + +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 0111111111 1122234445555555555442221 122345678888899999998887776542 1 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
.-.+++..=...|....+..+|...+..+-.
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 2345566667778888888888877766543
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.45 Score=58.67 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=118.7
Q ss_pred hcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 002273 301 LEGDINQGVA------YYKK-ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGV 365 (944)
Q Consensus 301 ~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~ 365 (944)
..+.+.++.+ .+.. .-...|.....+..++.++...+++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3566666666 4442 23446778889999999999999999999988877654 3455778888998
Q ss_pred HHHHCCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--------TYAEAYN 429 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--------~~~~a~~ 429 (944)
.....++...|...+.++..+ .|.-.....+++.++...++++.|+++++.|+..+. .....+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 888899999999999988876 355556778899999999999999999999998642 2245666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
.+++++...+++..|....+....+
T Consensus 1104 ~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 7788888888887777777666554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.61 Score=42.18 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 390 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g---~~~~A~~~l~~al~-~~p~~-~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
..+..+++++++.... +..+.+.+++..++ -+|+. -+..+.|+..+.+.|+|++++.+....++..|++.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3557778888877654 45567888888886 44433 467778888888888888888888888888888877654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.36 E-value=1 Score=41.78 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..++...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 45667777777889999999999999888999999999999999999999999999999998888888888888899988
Q ss_pred HcCCHH
Q 002273 128 DEGRLV 133 (944)
Q Consensus 128 ~~g~~~ 133 (944)
-+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.1 Score=47.91 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCC
Q 002273 694 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 773 (944)
Q Consensus 694 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~ 773 (944)
..++.+.-..+.+..- +.++++.+.+ ..++...+..+..| ...-+.+.+... -.+..+.+..+|+++-+-
T Consensus 137 w~~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~~-l~e~~~li~~~~l~I~~D--- 206 (279)
T cd03789 137 WPAERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKTS-LRELAALLARADLVVTND--- 206 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCCC-HHHHHHHHHhCCEEEeeC---
Confidence 3444555555555444 6777777654 22333333223333 123344566553 588999999999998332
Q ss_pred CcccHHHhhhcCCcEEecCCCcccccch
Q 002273 774 GTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 774 ~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
.| +.-=|.++|+|+|++-|.+...+.+
T Consensus 207 sg-~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 207 SG-PMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred CH-HHHHHHHcCCCEEEEECCCCccccC
Confidence 12 2233458899999999988777753
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=11 Score=43.24 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
+.+-|.-.++..+|..+++.|...+...|.+...... +.....+..+|....+.+.|.+++++|-+.+|.++-....+-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3344555667777788888887777777766554333 666777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 002273 199 VVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (944)
.+....++-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 7777777777777777766543
|
|
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.28 Score=51.27 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=89.8
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhcc-CCcceeeecccCCCCCCCCCccEEEecCCCCCcccccc--cccceEEc
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK--HVEELIRL 656 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~-r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~--~~e~~~~l 656 (944)
.+++.||+.+.|++||+.+.. +..+++. -.||.-+.+-+... .+.-..+..+.... .+...+.+ ..+.+.-+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 578999999999999997753 4433333 56777776644443 11122222222211 11111111 11122222
Q ss_pred CCCccccCCCCCCC-----CCCCCCC-CCCCCeEEEecCC-CCcC-CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHH
Q 002273 657 PECFLCYTPSPEAG-----PVCPTPA-LTNGFITFGSFNN-LAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 728 (944)
Q Consensus 657 p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~f~~~~~-~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~ 728 (944)
|... ..|.-..+ ....... .....|+|.-+.+ ..|. ..+.+..+.+-+.... ..++|.+++. ....
T Consensus 78 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~---~~~~ 151 (247)
T PF01075_consen 78 PYPS--TKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPE---EQEK 151 (247)
T ss_dssp -SSS--SSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSH---HHHH
T ss_pred CCCC--CCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccch---HHHH
Confidence 2110 11100000 0001111 2334454444432 2333 4444444444443333 4566666551 1111
Q ss_pred HHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 729 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 729 ~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
.....+ ..+.....+.+.+... -.+..+.+..+|+++ -+-+-.+==|-++|+|+|++-|.+...|.+
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~~~~-l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 152 EIADQI-AAGLQNPVINLAGKTS-LRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHH-HTTHTTTTEEETTTS--HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHH-HHhcccceEeecCCCC-HHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 222222 2233223577777754 689999999999997 222222334677999999999998777765
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.14 Score=49.94 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=57.7
Q ss_pred CcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcc---cccchhHHHhhcCCccccc--
Q 002273 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 815 (944)
Q Consensus 742 ~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~~~gl~~~v~-- 815 (944)
.+|.+.+..+ +....+..+||++ . +|++|+.|++.+|+|.|..|-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~---~m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVD---NMAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSS---SHHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechh---hHHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 5788888865 3555567799998 5 677899999999999887765541 2233445566667665442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 816 -KNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 816 -~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
.+++...+....+.+++..+..+..
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~ 153 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAK 153 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3356677778888888876554433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.3 Score=43.52 Aligned_cols=103 Identities=11% Similarity=-0.129 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 158 (944)
..++..+|..|.+.|+.++|++.|.++.+..... .+.++.+..+....+++.....+..++-...... ..+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence 3577888999999999999999999877654322 3566777788888889998888888886654331 11333344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
+....|..+...++|.+|-+.|-.+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 444455566666777777777665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.4 Score=40.97 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 441 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~ 441 (944)
.++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 455555555555555555555555555555555555555555555555555555455555555555555553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.81 E-value=13 Score=38.28 Aligned_cols=173 Identities=14% Similarity=0.010 Sum_probs=96.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSG--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
+++|+...+.+++++|+..|.+++...-. .......++..|...|++..--+.....- +++....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 78889999999999999999999876221 23456677777877777765433332211 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
-.+..+..+..++..|..++.......++..+. +-|.+-=+..++ ...-..+..++++
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i---------ewA~rEkr~fLr-----~~Le~Kli~l~y~ 137 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI---------EWADREKRKFLR-----LELECKLIYLLYK 137 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 112233444445554444333222222221111 111111111111 1233456778889
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
.|+|.+|+......+.. .+.-...+..-..+|....+..++...+..+-.
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999887766542 234456667777788888888777776665543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.3 Score=53.84 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...++.++|....+++.|+.++..++++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445566666666666666666666666666553 3445566666666666666666777777777777777777666
Q ss_pred HHHHHhhCCC
Q 002273 448 YEQCLKIDPD 457 (944)
Q Consensus 448 ~~~al~l~P~ 457 (944)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 6666555564
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.43 Score=52.71 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=91.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCCHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 119 (944)
.-+...+..+..+.-.+..+.+..|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 33445566666677777777889999999999999999999999999888765 466678888889999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
+.|+.++..++++.+|+.+...+....|.+
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 999999999999999999998888888854
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.18 Score=32.59 Aligned_cols=29 Identities=45% Similarity=0.623 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+..+|.++...+++++|+..++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555555555555555554444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.55 E-value=9.3 Score=40.09 Aligned_cols=27 Identities=7% Similarity=-0.181 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYE 347 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 347 (944)
.+++.+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467888899999999998888877663
|
; PDB: 3LKU_E 2WPV_G. |
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=92.53 E-value=11 Score=41.15 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=41.0
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEe-cCCCcccccchhHHHhhcCCcccccCCHHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 823 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt-~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~ 823 (944)
+.+.++.-+|+++ -+|||.+.||-.+|||+|. .+|..+. +. -.|...|+ =+-+.|+++-+.
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--vd-~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--VD-KYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--HH-HHHHHCCC-eEecCCHHHHHH
Confidence 4456667788988 7899999999999999997 4444211 11 23555576 233567777665
|
They are found in archaea and some bacteria and have no known function. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.1 Score=40.60 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q 002273 47 EGKDALSYANILRSRN---KFVDALALYEIVLE-KDSG-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (944)
+.+..|.+|..+.... +..+-+.+++.+++ ..|. .-+..+.++..+++.++|++++.+.+..++..|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444555555554443 23344555555554 2232 334555555555555555555555555555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=22 Score=39.86 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
+..+.+...++.+-.++-.+-++.-...++.+++... ++-.+++.++.||... ..++-...+++.++.+-++...-..
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPS---YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYN 196 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 196 (944)
|+..|.+ ++.+++..+|.+++...-. +.........+-...| .+.+.-+....+.-...... ..++..
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~------dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG------DDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc------ccHHHHHHHHHHHHHhhccchHHHHHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCC
Q 002273 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN--------------------RGDLESAIACYERCLAVSP 256 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p 256 (944)
+-.-|....++++|++.+...++.+..+..+.-.+...+.. -.++.+++.-|++.+..+.
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Q ss_pred Cc
Q 002273 257 NF 258 (944)
Q Consensus 257 ~~ 258 (944)
.+
T Consensus 291 Gn 292 (711)
T COG1747 291 GN 292 (711)
T ss_pred Cc
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.34 E-value=8.9 Score=43.46 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHH------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 205 MQYDTALGCYEKAAL------------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 205 g~~~~A~~~~~~al~------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
..|++|...|.-+.+ ..|.+.+.+..++.+...+|+.+-|....++++-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 346666666666654 3466778888899999999998888888777753
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=12 Score=42.45 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=72.8
Q ss_pred hCCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----C----------
Q 002273 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----D---------- 112 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~---------- 112 (944)
....|++|...|.-+... .|-+.+.++.++.+...+|+.+-|....++++=. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 346688888888776654 4567889999999999999999888888777621 1
Q ss_pred ------CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhHHhHHHHHHH
Q 002273 113 ------PQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLT 161 (944)
Q Consensus 113 ------p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 161 (944)
|.|-. +++..-..+.+.|-+..|.++.+-.++++|. ++-....+...|.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 22222 2333345566789999999999999999998 6655443333333
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.25 Score=48.76 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=44.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
...+.++.+.|.+.|.+++++-|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445667777777777777777777777777777777777777777777777777776543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.8 Score=42.51 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.++..+|..|.+.|+.++|++.|.++.+..... .+.++.+..+....+++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666666666666666666655443221 34455555555555555555555555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.96 E-value=18 Score=37.97 Aligned_cols=145 Identities=12% Similarity=0.023 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHH
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 165 (944)
+.+-....+..+..+-++....+++++|+.+.++..++.-- ..-..+|.+.++++++.... .++..+
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~-----------~yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET-----------IYRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH-----------HHhhHH
Confidence 44455556677788888888899999999988888877543 33467788888888775322 111111
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 242 (944)
.....|...+|. .+.+.+ ...+...++.+..++|+..+|++.++...+..|-. ..++-++...+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222221 122221 12334568888889999999999998888776631 234445555555554444
Q ss_pred HHHHHHH
Q 002273 243 SAIACYE 249 (944)
Q Consensus 243 ~A~~~~~ 249 (944)
+....+-
T Consensus 329 DvqavLa 335 (556)
T KOG3807|consen 329 DVQAVLA 335 (556)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.70 E-value=30 Score=39.90 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+...|...++..+|..+++.|+..+...|.+ +.....++.||....+.+.|.+.+++|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45678889999999999999999999877654 456678899999999999999999999999999999888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 002273 124 ILYKDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~ 146 (944)
.+....+.-++|+....+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 99999999999999988876654
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.64 E-value=20 Score=37.68 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=22.1
Q ss_pred hCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Q 002273 220 ERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 220 ~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 254 (944)
-.|...+.+...+. .|...++...|...+....+.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34555555555544 466779999998887776655
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=38 Score=40.66 Aligned_cols=139 Identities=9% Similarity=-0.137 Sum_probs=69.8
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH---HH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DK 375 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~ 375 (944)
....++++.+...+..+-..........+-+|.++...|+.++|...|+++.. . .+ .|-.++.-. +|.. ..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~-~~--fYG~LAa~~--Lg~~~~~~~ 395 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-Q-RG--FYPMVAAQR--LGEEYPLKI 395 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-C-CC--cHHHHHHHH--cCCCCCCCC
Confidence 33555665555555554333334455566666666666666666666666533 1 11 121222111 1110 00
Q ss_pred H-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 376 A-VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 376 A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
. ...-...+.. ......+..+...|+..+|...+..++.. .+..-...++.+....|.++.|+....+
T Consensus 396 ~~~~~~~~~~~~-----~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 396 DKAPKPDSALTQ-----GPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCCchhhhhcc-----ChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0 0000000000 12344556667777777777777776664 2345566677777777777777766543
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.23 E-value=20 Score=37.64 Aligned_cols=58 Identities=12% Similarity=-0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (944)
...-+...+..+..+-++....+++++|+-+.++..++.-- ..-..+|.+.++++++.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 34445556778888889999999999999999998887643 33466788888887764
|
|
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=1 Score=49.28 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 772 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~ 772 (944)
++-|.++++..++.+.. .++++.+.+ + . +.+++..... ..+.|.+. . ...+..||++| .
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~--~--~-~~i~~~~~~~----~~~~~~~~---~---~~~m~~aDlal----~ 241 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFF--K--G-KDLKEIYGDI----SEFEISYD---T---HKALLEAEFAF----I 241 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCC--c--H-HHHHHHHhcC----CCcEEecc---H---HHHHHhhhHHH----h
Confidence 56677788887777653 344444332 1 1 3444433321 12334321 1 34667899999 6
Q ss_pred CCcccHHHhhhcCCcEEe
Q 002273 773 AGTTTTCESLYMGVPCVT 790 (944)
Q Consensus 773 ~~~~t~~eal~~gvPvvt 790 (944)
..||+|+|++.+|+|.|.
T Consensus 242 ~SGT~TLE~al~g~P~Vv 259 (347)
T PRK14089 242 CSGTATLEAALIGTPFVL 259 (347)
T ss_pred cCcHHHHHHHHhCCCEEE
Confidence 778999999999999665
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.96 E-value=47 Score=40.76 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEA-----HIGKGICLQMQNMGRLAFDSFSEAV 109 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al 109 (944)
+-..-..++....|++|+.+.+-....+|..... ....|..++.+++|++|+..|.+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4445567777888999999988776656653211 1122666889999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 944 | ||||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 8e-31 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-24 | ||
| 2vsn_A | 568 | Structure And Topological Arrangement Of An O-Glcna | 2e-28 | ||
| 2vsy_A | 568 | Xanthomonas Campestris Putative Ogt (Xcc0866), Apos | 3e-28 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 5e-28 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 4e-23 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-18 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-14 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 9e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 7e-12 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-11 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-10 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-11 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 4e-10 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 4e-07 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 5e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 5e-08 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 7e-04 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 8e-08 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 1e-07 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 2e-04 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 1e-07 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 3e-04 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 1e-07 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 3e-04 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 2e-07 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 4e-04 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 1e-06 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 2e-06 | ||
| 3q3e_A | 631 | Crystal Structure Of The Actinobacillus Pleuropneum | 1e-05 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 5e-05 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 7e-05 | ||
| 2xpi_A | 597 | Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 | 3e-04 |
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568 | Back alignment and structure |
|
| >pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae Hmw1c Glycosyltransferase Length = 631 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 125/571 (21%), Positives = 207/571 (36%), Gaps = 43/571 (7%)
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
++ A P A L + Q L++ P +++ LG
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
V Q + AA ++++A A P + LG DAG A AY + ++ P+
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Query: 459 RNAGQNRLLAMNYINEGH-------------------------------DDKLFEAHRDW 487
L + + + R
Sbjct: 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTR 184
Query: 488 GKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS 547
+ S + PL +G+VS + H A + + ++
Sbjct: 185 AQAIAA--SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHL 242
Query: 548 -AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLG 606
A D T+R R + + D+ + A +R ID+L +L G +
Sbjct: 243 FATSGDDGSTLRTR---LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPE 299
Query: 607 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS 666
+ A +PAPVQV W+ YP T+G P +DY + D+ A PP + + E ++RL F S
Sbjct: 300 VFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTS 359
Query: 667 PEAG--PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 724
P L + FNN K+ P+ + +L VP+S L + P
Sbjct: 360 RVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGP---G 416
Query: 725 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM 784
R + G+++ R+ +P L + ++ Y D+ LDT PY TT ++L+
Sbjct: 417 EADARLRAFAHAQGVDAQRLVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWT 475
Query: 785 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRD 844
G P +T G A V SL +GL + ++ +V A+ LASD AL L +
Sbjct: 476 GCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDV 535
Query: 845 LMSKSPVCDGQNFALGLESTYRNMWHRYCKG 875
L S V FA + + + R+
Sbjct: 536 LRRASGVFHMDGFADDFGALLQALARRHGWL 566
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 9e-31
Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 7/144 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
A+ P + L + G+T G L + P
Sbjct: 3 ADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ A LG V ++ A ++A+ P + +G ++ G E+A A Y
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 250 RCLAVSPNFEIAKNNMAIALTDLG 273
R + P + L
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLC 139
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 9/156 (5%)
Query: 98 GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
AV+ PQ+ A G + + L+ P + A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L V + +A P + LG + Q + A Y
Sbjct: 63 LGRVRWTQQ-------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251
+A P + + D + +
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 23/224 (10%), Positives = 50/224 (22%), Gaps = 30/224 (13%)
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ + + + A++ P A+ L + ++ P + EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288
+G + + A ++ +P + AL D
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA---------------- 104
Query: 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348
G A Y +A L + + V
Sbjct: 105 --------------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 392
A + +D ++ A +I +
Sbjct: 151 VRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRP 194
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 9e-20
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 7/145 (4%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
L + + A + + + L P + A G +
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ R EAA +A A P + + LG +L+ AG + Y A +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTA 210
+ P L L +
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 20/111 (18%), Positives = 30/111 (27%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A+ + L G+ EA G Q A +A P
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
++ G +D G+ AA +Y +A P L L
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 10/99 (10%), Positives = 28/99 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
+ ++ + +A L + + + + G L+ A +++ A +L P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ + + +A A
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 415 bits (1068), Expect = e-133
Identities = 150/776 (19%), Positives = 244/776 (31%), Gaps = 72/776 (9%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
P +A + + + +++G + EA Y KAL P + A LA VL
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------- 56
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G Q+ + Y EA++I P +A AY N+G E+ AL CY +A P +A+A+ N
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290
+ I+K+ G++ AIA Y L + P+F A N+A L +
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV------------------ 158
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
D KK + + L + + A
Sbjct: 159 ------------CDWTDYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAI 205
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410
+ S +G V + G +
Sbjct: 206 AERHGNLCLDKI------------NVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTS 253
Query: 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 470
M NP E + + + + N + +
Sbjct: 254 HLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQD 313
Query: 471 YINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH---SVSY 527
I+ + + +R W L + Y+ D T
Sbjct: 314 GIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQ 373
Query: 528 FIEAPLVYHD-YQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVR 586
+ E + + + G I+ + ++ + A +
Sbjct: 374 YSEKLAYMPHTFF-----IGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLD 428
Query: 587 EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETK 646
+V++ + + + P T + I
Sbjct: 429 SLPDVKIVKMKCPDGGDNADS-----SNTALNMPVIPMNTIAEAVIEMINRGQIQITING 483
Query: 647 QKHVEELIRLPE----CFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVW 702
L P L I + +FN L KI P LQ+W
Sbjct: 484 FSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMW 543
Query: 703 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762
A IL VPNS L + P + +GL R+ P + +H++ L
Sbjct: 544 ANILKRVPNSVLWLLRFPAVG---EPNIQQYAQNMGLPQNRIIFSP-VAPKEEHVRRGQL 599
Query: 763 MDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYV 822
D+ LDT G TT + L+ G P VTM G A V S LT +G LIAKN EY
Sbjct: 600 ADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYE 659
Query: 823 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVP 878
+A++L +D+ L +R + SP+ + + + + LE Y MW Y G+ P
Sbjct: 660 DIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKP 715
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 296 bits (758), Expect = 4e-88
Identities = 110/541 (20%), Positives = 204/541 (37%), Gaps = 60/541 (11%)
Query: 252 LAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAY 311
P + NN+A + G+I + V
Sbjct: 2 PGSCPTHADSLNNLANIKREQ------------------------------GNIEEAVRL 31
Query: 312 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371
Y+KAL +A A NL + K A++ Y+ A +P A+A +N+G K+
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91
Query: 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
++ A++CY A+ I P F+ + +NL ++ G + A A+ P + +AY NL
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Query: 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMNYINEGHDDKLF---EAH 484
+ + + ++ + I D + +M Y K +
Sbjct: 152 AHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGN 211
Query: 485 RDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVV 544
K + Y + K + L +GYVS D+ H S+ +++ H+ ++V
Sbjct: 212 LCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVF 271
Query: 545 VYS-AVVKADAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTAN 602
Y+ + ++ + + D+ I K A + +D I ILV + G+T
Sbjct: 272 CYALSPDDGTNFRVKVMAEA----NHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKG 327
Query: 603 NKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLC 662
+ + A +PAP+Q W+GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 328 ARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFI 387
Query: 663 YTPS---PEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCK 719
+ P +NG I ++N + L ++P+ ++V
Sbjct: 388 GDHANMFPHLKKKAVIDFKSNGHI----YDNRIVLNG---IDLKAFLDSLPDVKIVKMKC 440
Query: 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTC 779
P D+ ++ V + I M + I+++ F + T
Sbjct: 441 PDGGDNADSS-------NTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATT 493
Query: 780 E 780
+
Sbjct: 494 Q 494
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-22
Identities = 64/438 (14%), Positives = 136/438 (31%), Gaps = 34/438 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A++L+ + K +AL Y+ + +A+ G L+ + A ++ A++++P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A AH++ ++KD G + EA SY AL P + +L L++ +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-------PDAYCNLAHCLQIVCDWT 162
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
D ++ + + I L V+ + KA ER +
Sbjct: 163 DYDERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLH 221
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKTYGRALLLFRLNGSNFQS 293
+ R + + + + + G + + + +
Sbjct: 222 KPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT 281
Query: 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL-AFHF 352
F V E + ++ + N AD ++ G+ + EL A
Sbjct: 282 NFRVKVMAEANHFIDLS----QIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRP 337
Query: 353 NPHCAEACNNL---GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409
P A G ++ D D+ + +S+ L + + + +
Sbjct: 338 APIQAMWLGYPGTSGALFMDYIITDQET----SPAEVAEQYSEKLAYMPHTFFIGDHANM 393
Query: 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469
+ +KA+ + Y+N VL + L PD + +
Sbjct: 394 FPHLKKKAVIDFKSNGHIYDNRIVLNG---------IDLKAFLDSLPDVKIV----KMKC 440
Query: 470 NYINEGHDDKLFEAHRDW 487
+ D +
Sbjct: 441 PDGGDNADSSNTALNMPV 458
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 396 bits (1021), Expect = e-130
Identities = 102/411 (24%), Positives = 175/411 (42%), Gaps = 37/411 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A+ F A + ++ N + + + A+K +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+++ G +YK+ G+L EA E Y AL P + LA L G + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-------DME 118
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+Q Y AL+ +P +LG + L + + A CY KA +P +A A+ N+G +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294
+ +G++ AI +E+ + + PNF A N+ L +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR--------------------- 217
Query: 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354
++ VA Y +AL + ++A NL Y E D+AI Y A P
Sbjct: 218 ---------IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414
H +A NL K++ ++ +A +CY AL + P + SLNNL + QG ++ A +
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
KA+ P +A A++NL + + G + A+ Y++ ++I P +A N
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 312 bits (803), Expect = 3e-98
Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 41/387 (10%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
++I + + + ++++ EA+ G + G+L A + + A++L
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK--ERGQLQEAIEHYRHALRLK 97
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P + + G + A ++Y AL +P V +DLG LK G
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------YCVRSDLGNLLKALGR 150
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
++ Y +A++ P++A A+ NLG V++ + A+ +EKA P + +AY N+G
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
+ K + A+A Y R L++SPN + N+A + G
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG------------------- 251
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
I+ + Y++A+ H+ DA NL A E A Y A
Sbjct: 252 -----------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QGK+ A
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAG 439
++AI +PT+A+AY+N+G ++
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 265 bits (681), Expect = 1e-80
Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 30/304 (9%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+L AG+ + + + + +P L ++ + + D + A +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A AL
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA--------- 114
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341
GD+ V Y AL YN +LG + + +
Sbjct: 115 ---------------------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE 153
Query: 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401
A Y A P+ A A +NLG ++ + + A+ ++ A+++ PNF + NLG V
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
D A +A++ +P +A + NL +Y + G I LAID Y + +++ P +A
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Query: 462 GQNR 465
N
Sbjct: 274 YCNL 277
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 1e-68
Identities = 77/320 (24%), Positives = 130/320 (40%), Gaps = 41/320 (12%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
A L + A+ Y L+ + G L+ +GRL A + +A++
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK--ALGRLEEAKACYLKAIETQ 165
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P A A ++ G ++ +G + A + KA++ DP++ +LG LK A
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARI 218
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ Y AL + P++A + NL VY E D A+ Y +A +P + +AYCN+
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
K +G + A CY L + P + NN+A + G
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------------------- 319
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 320 -----------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
Query: 353 NPHCAEACNNLGVIYKDRDN 372
+P A+A +N+G K+ +
Sbjct: 369 SPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 9e-52
Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 30/238 (12%)
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287
+ GD E+A + P+ ++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--------------- 46
Query: 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347
+++ + A+ N A+A NLG Y E + AI Y
Sbjct: 47 ---------------RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 348 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407
A P + NL +++ AV+ Y AL P+ ++LG + G++
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ A KAI P +A A++NLG ++ G I LAI +E+ + +DP+ +A N
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 384 bits (987), Expect = e-122
Identities = 82/547 (14%), Positives = 179/547 (32%), Gaps = 37/547 (6%)
Query: 337 LKFDMAIVFYELAFHFNPHCAEACN-NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395
+ +A++F F H + N +LD + + S
Sbjct: 105 YQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLDSSKSSLIKFCILYLPESNVNL 164
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
NL V++ + A+ + A+N + + +Q ++
Sbjct: 165 NLDVMWNIS-PELCASLCFALQSPRFIGTSTAFNKRATILQWF------PRHLDQLKNLN 217
Query: 456 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN-----TKDPERP 510
+ + +Y + + A +R + S+Y D +P
Sbjct: 218 NIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRH--IESEYGWKDRDVAHIGYRNNKP 275
Query: 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 570
+++ + + HS+ + + +++ ++ + D ++ +
Sbjct: 276 VMVVLLEHFHSAHSIYRTH-STSMIAAREHFYLIGLGSP-SVDQAGQEVFDE-------F 326
Query: 571 RDIYGIDEKKVAAMVR----EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT 626
+ G + K+ +R + I + + + AP+Q +G+P TT
Sbjct: 327 HLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATT 386
Query: 627 GLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-PALTNGFITF 685
I+Y I + D +++ E L+RLP+ L Y PS A +
Sbjct: 387 HSDFIEYVIVE--DDYVGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNI 444
Query: 686 GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD 745
G + K+ P L+ I + + H ++ + L
Sbjct: 445 GIASTTMKLNPYFLEALKAIRDRAKVKVHF-HFALGQSNGITHPYVERFIKSYLGD-SAT 502
Query: 746 LLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 805
P H +++ D+ ++ FP+ T + + +G+ V G+ ++ L
Sbjct: 503 AHPH-SPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLF 561
Query: 806 TKVGLK-HLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDG--QNFALGLE 862
++GL LIA DEYV+ A++LA + LR + + + + G +
Sbjct: 562 KRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFL 621
Query: 863 STYRNMW 869
Sbjct: 622 EKLNAFL 628
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 3e-82
Identities = 63/426 (14%), Positives = 133/426 (31%), Gaps = 47/426 (11%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD---SFSEAVK 110
+ + + F A Y+ L D+ EA + ++S K
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
D + + + AE Y +++ + +L +L +
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS-------SDLLLCKADTLFVR 318
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
D + + L+IDP+ Y E + + P A +
Sbjct: 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290
+G+ Y + A + + + P F A A + G
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG----------------- 421
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ +Q ++ Y A LG+ + ++ +A + + ++
Sbjct: 422 -------------EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTV 403
+ N LGV+ ++ ++ A+ +Q AL + + ++ + NLG Y
Sbjct: 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528
Query: 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
DAA + + + + + A + + ++Y LAI + L I P+ A
Sbjct: 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588
Query: 464 NRLLAM 469
A+
Sbjct: 589 LLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 250 bits (639), Expect = 2e-72
Identities = 63/425 (14%), Positives = 120/425 (28%), Gaps = 50/425 (11%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L N R K + L + + ++ ++ +G + A + +
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLRGQVYTNLSNFDRAKECYK 224
Query: 107 EAVKLDPQNACAHTHCG---ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
EA+ +D + A +L DE + +Y D ++ + L L
Sbjct: 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS-------LYML 277
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ + + Y ++ + ++ L K P
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283
+ Y G+ + P + + I +
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---------- 387
Query: 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343
I++ Y+ K+ + + A ++ + D AI
Sbjct: 388 --------------------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427
Query: 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403
Y A LG+ + N+ A E Q + ++ LN LGVV
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487
Query: 404 QGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456
+ M A + A+ +A + NLG YR AIDA Q L +
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547
Query: 457 DSRNA 461
+ N
Sbjct: 548 NDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 245 bits (626), Expect = 1e-70
Identities = 53/400 (13%), Positives = 117/400 (29%), Gaps = 45/400 (11%)
Query: 46 FEGKDALSYANILRSRNKFVDALAL-YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+E D L ++L + ++ L L Y ++D+ + + + +
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ ++ +++ R ++ K L DP L + G
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + P A + +G+ Y + + A + K++ P +
Sbjct: 354 -------EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
A+ + G+ + AI+ Y + + + + LG
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG----------- 455
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
+I Y + + + + LGV AI
Sbjct: 456 -------------------NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496
Query: 345 FYELA-------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
++ A A NLG Y+ D A++ L + N + +
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437
+VY + A + +++A +P A + L +
Sbjct: 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 227 bits (579), Expect = 3e-64
Identities = 63/428 (14%), Positives = 119/428 (27%), Gaps = 41/428 (9%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A N+ L L K A G + + A +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + A G +Y + A E Y +AL D A + L L A
Sbjct: 196 IKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV------SNHLLTA 248
Query: 171 GNTQDGIQK--YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
D + K Y K D + + Y L + + Y + ++
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288
R +A + L + P +L + G
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG--------------- 353
Query: 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348
+ N+ + + A +G+ Y + K A ++
Sbjct: 354 ---------------EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408
+ +P A + D+A+ Y A + LG+ + G +
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458
Query: 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
A E ++ + A N LGV+ + + AI+ ++ L + +++ +
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Query: 469 MNYINEGH 476
+ N GH
Sbjct: 519 --WANLGH 524
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-27
Identities = 48/281 (17%), Positives = 79/281 (28%), Gaps = 21/281 (7%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
QY A EK +A+ + +Y GD A + + + +
Sbjct: 99 QYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSA-CRYLA 156
Query: 266 AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADA 325
A L L + AL L E D + A
Sbjct: 157 AFCLVKL--YDWQGALNLLG-----------ETNPFRKDEKNANKLLMQDGGIKLE-ASM 202
Query: 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE---CYQM 382
Y G Y + FD A Y+ A + C EA + L + + + + Y
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST 262
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
F +SL L + T AE +I ++
Sbjct: 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 483
+ + L+IDP + + L + G +KL+
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLAS--LHESGEKNKLYLI 361
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 3e-81
Identities = 44/423 (10%), Positives = 102/423 (24%), Gaps = 40/423 (9%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A Q +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P+ A + + +A P + + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-------VVAIASNGG 182
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285
A + G + ++ + + ++P +A + + L T R L
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET--VQRLL---- 296
Query: 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 345
+A A+ + G + +
Sbjct: 297 ------------------------PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
A P A + + + + + + A + P ++ + G
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ ++ +A P A + + ++ + Q + P A +
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452
Query: 466 LLA 468
Sbjct: 453 GGG 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 4e-78
Identities = 44/407 (10%), Positives = 95/407 (23%), Gaps = 37/407 (9%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P+ A G + + +A P + + G +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ-------VVAIASNGGGKQALET 223
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A P A +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
+ ++ + + ++P +A + L T R L
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET--VQRLL----------- 330
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
+A A+ + + + A
Sbjct: 331 -----------------PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
P A + G + + + + + A + P ++ + +
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459
++ +A P A + G SI + + L +
Sbjct: 434 VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 1e-76
Identities = 48/425 (11%), Positives = 101/425 (23%), Gaps = 44/425 (10%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK-----DSGNVEAHIGKGICLQMQNMGRLAFD 103
L A R V+A+ + L V A Q +
Sbjct: 36 GQLLKIAK--RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
+A L PQ A + + +A P + +
Sbjct: 94 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASH 146
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ Q + +A + P A + G L L +A P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283
A + G + ++ + + ++P +A + L T R L
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE--TVQRLL-- 262
Query: 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343
+A A+ + + +
Sbjct: 263 --------------------------PVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296
Query: 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403
A P A + G + + + + + A + P ++ +
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356
Query: 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
+ ++ +A P A + G + ++ + Q + P+ A
Sbjct: 357 LETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 416
Query: 464 NRLLA 468
+
Sbjct: 417 SHDGG 421
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 1e-71
Identities = 42/402 (10%), Positives = 99/402 (24%), Gaps = 37/402 (9%)
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
A L L+ D+G + +G ++ + + L P+ A
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
+ + +A P + + + Q + +A +
Sbjct: 83 QALETVQRLLPVLCQAHGLTPQQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P A + L L +A P A + G + ++ +
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306
+ ++P +A + L T R L
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQALE--TVQRLL------------------------- 228
Query: 307 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366
+A A+ + G + + A P A +
Sbjct: 229 ---PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG 285
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
+ + + + + A + P ++ + G + ++ +A P
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345
Query: 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
A + + ++ + Q + P+ A +
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-62
Identities = 39/386 (10%), Positives = 93/386 (24%), Gaps = 37/386 (9%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
H ++ + +A + ++LD G + E
Sbjct: 5 HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P + + + Q + +A + P A +
Sbjct: 65 LNLTPEQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L L +A P A + + +++ + + ++P +A
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322
+ L T R L +A
Sbjct: 178 ASNGGGKQALE--TVQRLL----------------------------PVLCQAHGLTPQQ 207
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+ + G + + A P A + G + + + + +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
A + P ++ + + ++ +A P A + G + ++
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLA 468
+ Q + P A +
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGG 353
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 8e-59
Identities = 39/355 (10%), Positives = 86/355 (24%), Gaps = 37/355 (10%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
++ H E L A E L D L I T+++
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQ-----LLKIAKRGGVTAVEAVHAW 56
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
++ + L + P A + L L +A P A +
Sbjct: 57 RNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 114
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293
+ ++ + + ++P +A + L T L
Sbjct: 115 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE--TVQALL------------ 160
Query: 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353
+A A+ + G + + A
Sbjct: 161 ----------------PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413
P A + G + + + + + A + P ++ + G + +
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
+ +A P A + + ++ + Q + P A +
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 319
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-39
Identities = 31/230 (13%), Positives = 60/230 (26%), Gaps = 16/230 (6%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ ++ A+ ++ L + V A G Q +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L PQ A + + +A P + + G
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-------VVAIASNGG 386
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
A + G + + ++ + LA N + +AL LG +
Sbjct: 447 VAIASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGGR 490
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 1e-76
Identities = 61/346 (17%), Positives = 110/346 (31%), Gaps = 37/346 (10%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+++ + + + Y+ P A + G G+ I
Sbjct: 38 NQEAQNQVTVSASEKGYYFHTENPFKDWPGA-------FEEGLKRLKEGDLPVTILFMEA 90
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
A+ DP A A+ LG+ +E A+ ++ +P +A + V Y N +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302
A + + +P ++ N + ++ +
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRR--MSKSPVDS------------------ 190
Query: 303 GDINQGVAYYKKALYYNWHYADAM--YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
+ Y +A + N D LGV + +F+ AI + A P
Sbjct: 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW 250
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
N LG + D ++AVE Y AL I+P F +S NLG+ G A A++
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310
Query: 421 NPTYAEA--------YNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
N+ R A S+ + ++ D D
Sbjct: 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 7e-73
Identities = 58/349 (16%), Positives = 110/349 (31%), Gaps = 43/349 (12%)
Query: 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192
A + + E + + YY + P
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ G+ + + E A L+ P AEA+ +G+ + ++AI +RCL
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 253 AVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYY 312
+ PN A +A++ T+
Sbjct: 127 ELQPNNLKALMALAVSYTNTS------------------------------HQQDACEAL 156
Query: 313 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL----------AFHFNPHCAEAC-- 360
K + N Y + N + G + + V + A H N +
Sbjct: 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
LGV++ ++A++ + AL+++P N LG + + A E +A+
Sbjct: 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469
P + + NLG+ + G+ A+ + L + SRN Q A+
Sbjct: 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 2e-57
Identities = 53/346 (15%), Positives = 101/346 (29%), Gaps = 54/346 (15%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
A + E + +D G+ EA GI + A + +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TS 166
+L P N A + Y + +A E+ + +P YK + S
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 167 LKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
+ + + Y EA + LGV++ +++ A+ + A RP
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+ +G N E A+ Y R L + P F ++ N+ I+ +L
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL------------ 294
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--KFDMA 342
G + V+ + AL + A + +A
Sbjct: 295 ------------------GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
Query: 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388
+ + P +A N ++ A ++ P
Sbjct: 337 LSLMD-----QPELFQAANL------------GDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 8e-44
Identities = 41/274 (14%), Positives = 77/274 (28%), Gaps = 50/274 (18%)
Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVI--------YKNRGDLESAIACYERCLAVS 255
M+++ A E + M +N+ + ++ Y
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
+ GD+ + + + A
Sbjct: 62 FKDWPGAFEEGLKRLKE------------------------------GDLPVTILFMEAA 91
Query: 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 375
+ + A+A LG+ E AIV + P+ +A L V Y + +
Sbjct: 92 ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151
Query: 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA-------- 427
A E + + P + + N + +M + Y EA
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211
Query: 428 ----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
LGVL+ +G + AIDA+ L + P+
Sbjct: 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-40
Identities = 38/240 (15%), Positives = 66/240 (27%), Gaps = 25/240 (10%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298
+ E A A E + M +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEM----------------------ARRNWISENQE 40
Query: 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358
+ + ++ Y + + G+ + + I+F E A +P AE
Sbjct: 41 AQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE 100
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418
A LG+ + +N A+ Q L ++PN ++L L V YT A E ++ I
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160
Query: 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEG 475
NP Y N +S + + A + G
Sbjct: 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 5e-72
Identities = 46/305 (15%), Positives = 87/305 (28%), Gaps = 25/305 (8%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ Y Y G+ +L A +E P EA+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG-----TKTYGRALLLFR 285
+G+ AI + P +A++ T+ + LL
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS-- 118
Query: 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 345
Q + + + + + ++
Sbjct: 119 ------QPQYEQ------------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ A + +A+ NP Y N+ V Y + LA + + +
Sbjct: 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA 280
Query: 466 LLAMN 470
Sbjct: 281 SREAT 285
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 3e-68
Identities = 60/333 (18%), Positives = 107/333 (32%), Gaps = 34/333 (10%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G +++ Y + Y + G S+ N + + + P
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP-------MEEGLSMLKLANLAEAALAFEAVCQAAPE 53
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
A+ +LG+ +E + A+ A + P + + V + N + +A+A
Sbjct: 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 113
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309
L P +E + A D+ LN + F + +
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDID-----------DLNVQSEDFFFAAPNEYR----ECR 158
Query: 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
AL N + A +LGV Y +D A A P A+ N LG +
Sbjct: 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218
Query: 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429
+ +A++ Y AL I P + + + N+ V Y+ + D AA+ + +AI
Sbjct: 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278
Query: 430 N------------LGVLYRDAGSISLAIDAYEQ 450
+L L Y Q
Sbjct: 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 4e-60
Identities = 50/350 (14%), Positives = 101/350 (28%), Gaps = 61/350 (17%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ + + +A +E V + EA G+ LA + + A
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------- 162
LDP++ H + + +E A S L + P Y+ D
Sbjct: 83 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142
Query: 163 -LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
++ + AL+++P+ A + +LGV+Y+ YD+A +A R
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
P A+ + +G N + A+ Y R L ++P + NMA++ +++
Sbjct: 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM--------- 253
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341
+ +A+Y +
Sbjct: 254 ---------------------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW--- 289
Query: 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNF 390
+ ++ + D Y + F
Sbjct: 290 -------------------DFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 9e-58
Identities = 41/335 (12%), Positives = 79/335 (23%), Gaps = 64/335 (19%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
G+ L EAA ++ A P LG +
Sbjct: 18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-------EEAWRSLGLTQAENEK 70
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC--- 229
I A +DP + L V ++ + AL L +P Y +
Sbjct: 71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 230 ------------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277
+ + + L ++PN ++ +
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN---- 186
Query: 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 337
+ + A ++A+ A LG
Sbjct: 187 --------------------------NYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN- 396
+ A+ Y A NP N+ V Y + D A + A+ ++ +
Sbjct: 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA 280
Query: 397 -----------LGVVYTVQGKMDAAAEMIEKAIAA 420
++ V + D + +
Sbjct: 281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 22/152 (14%), Positives = 44/152 (28%)
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
Y + E G+ NL +A ++ P ++ +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
G+ K A + A +P + L V + + + + A+ + L P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 458 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
G L A I++ + +
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 35/234 (14%), Positives = 62/234 (26%), Gaps = 52/234 (22%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + S + N++ + L LE + + + H G+ +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS--NN 187
Query: 100 L--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
A + AV+L P +A G + R EA ++Y++
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR---------------- 231
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
AL I+P Y YN+ V YS + QYD A +A
Sbjct: 232 -------------------------ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 218 ALERPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
+ + R P+ +
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR-----PDLVELTYAQNVEP 315
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 3e-71
Identities = 64/353 (18%), Positives = 115/353 (32%), Gaps = 56/353 (15%)
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLK-----LAGNTQDGIQKYYEALKIDPH---- 189
+ +A SA S + L L ++ L+ Y + + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
P + G+ + A+ +E A + P + EA+ +G AI+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309
RCL + P+ + A +A++ T+ Q
Sbjct: 123 RCLELKPDNQTALMALAVSFTNES------------------------------LQRQAC 152
Query: 310 AYYKKALYYNWHYADA---------MYNLGVAYGEM------LKFDMAIVFYELAFHFNP 354
+ L Y YA LG + + F + A +P
Sbjct: 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212
Query: 355 HC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
+ LGV++ DKAV+C+ ALS++PN N LG + + A
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+A+ P Y + NLG+ + G+ A++ + + L + SR
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 231 bits (590), Expect = 4e-68
Identities = 57/337 (16%), Positives = 101/337 (29%), Gaps = 31/337 (9%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +Y K + + G G+ + + + A++ DP + A
Sbjct: 44 LTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ LG +E Q A+ + +P A + V + N A L
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 254 VSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYK 313
+P + G R L GS F V +
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRIL------GSLLSDSLFLEV---------KELFL 205
Query: 314 KALYYNWHYADAM--YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371
A+ + D LGV + ++D A+ + A P+ N LG + +
Sbjct: 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265
Query: 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
++AV Y+ AL ++P + +S NLG+ G A E +A+
Sbjct: 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325
Query: 432 GVLYRDA-----------GSISLAIDAYEQCLKIDPD 457
G + + G A + L
Sbjct: 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-63
Identities = 57/348 (16%), Positives = 103/348 (29%), Gaps = 63/348 (18%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL--TDLGTS 166
++L P N A + + +E +A E L P+Y LG S
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 167 LKLAGNTQDG------IQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAA 218
++ G+ + + A+++DP LGV+++ +YD A+ C+ A
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278
RP + +G N E A+A Y R L + P + ++ N+ I+ +L
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL------ 298
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
G + V ++ +AL G
Sbjct: 299 ------------------------GAHREAVEHFLEALNMQRKSRGPRGEGGAMS----- 329
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 386
+ L + D LS
Sbjct: 330 ------------------ENIWSTLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 2e-53
Identities = 58/377 (15%), Positives = 114/377 (30%), Gaps = 81/377 (21%)
Query: 67 ALALYEIVLEKDSGN----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
A Y+ + + N +G+ + A F AV+ DP++ A +
Sbjct: 45 TSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL 104
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + + + A + + L P + A LA+ T+ + + +
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-------SLQRQACEILRD 157
Query: 183 ALKIDPHYAPAY---------YNLGVVYSEL------MQYDTALGCYEKAALERPMY--A 225
L+ P YA LG L + + A P
Sbjct: 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285
+ C +GV++ G+ + A+ C+ L+V PN + N + L +
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN------------ 265
Query: 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 345
+ E + VA Y++AL Y + YNLG++ + A+
Sbjct: 266 --------------QSE----EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
+ A + G + + L + ++ G
Sbjct: 308 FLEALNMQRKSRGPRGEGGAMS-----------------------ENIWSTLRLALSMLG 344
Query: 406 KMDAAAEMIEKAIAANP 422
+ DA + ++
Sbjct: 345 QSDAYGAADARDLSTLL 361
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-32
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 312 YKKALYYNWHYADAMYNLGVAYGEMLKF------------DMAIVFYELAFHFNPHC--- 356
+++A D L EM K D+ Y+ + F
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 357 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415
G+ +L AV ++ A+ P ++ LG + A +
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475
+ + P A L V + + A + L+ P + G
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 476 HDDKLFEAHRDWGK 489
++ +
Sbjct: 183 PSKRILGSLLSDSL 196
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 3e-70
Identities = 51/364 (14%), Positives = 110/364 (30%), Gaps = 30/364 (8%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ + L
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS + E + ++
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+ I + L++ A + + + A+ + A+ + E
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286
A+ + +Y GD E +++ CL + + + + L
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL----- 244
Query: 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMA 342
G + Y+ + A+ + + + + K A
Sbjct: 245 ---------IRD----GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
Query: 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402
I P A + Y + D+A++ Y+ A N Q L
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 403 VQGK 406
+ +
Sbjct: 352 LLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 1e-66
Identities = 46/385 (11%), Positives = 100/385 (25%), Gaps = 68/385 (17%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H G G+L +A +H A+ DP I T G ++
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSK 54
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + + + A G + + + D A ++K P E +
Sbjct: 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114
Query: 235 YK---------------NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
K + D +AI ++ L V + A G
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG------ 168
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
+ + ++ K A +A Y + Y ++
Sbjct: 169 ------------------------EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204
Query: 340 DMAIVFYELAFHFNPHCAEACNNL------------GVIYKDRDNLDKAVECYQMALSIK 387
++++ + + A Y+ + +
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 388 PNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 443
P+ +S + ++ K A + + + P A + Y
Sbjct: 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
Query: 444 AIDAYEQCLKIDPDSRNAGQNRLLA 468
AI YE + + + + + A
Sbjct: 325 AIQDYEAAQEHNENDQQIREGLEKA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-47
Identities = 44/243 (18%), Positives = 72/243 (29%), Gaps = 9/243 (3%)
Query: 40 GSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+K E + S A + A+ + +LE + E + C + R
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A A KL N A LY G + + L D +K V
Sbjct: 172 KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 160 -----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTA 210
L + L G D KY +K +P A + + +S+ + A
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
+ + P A + Y + AI YE + N + + + A
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 271 DLG 273
L
Sbjct: 352 LLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-26
Identities = 25/133 (18%), Positives = 41/133 (30%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
E LG L A+ + A+ P+ + V+ GK AA + K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
IA + A G L G + A D +++ LK +P + + +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 477 DDKLFEAHRDWGK 489
D
Sbjct: 123 LRSQALDAFDGAD 135
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 23/169 (13%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAH------------IGKGICLQMQNMGRLAF 102
+ + +L+ L+ D + I L A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 103 DSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ +K +P A + + + + VEA + L +P A
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA------ 308
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
L D + + + IQ Y A + + + L L Q
Sbjct: 309 -LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 5e-70
Identities = 54/481 (11%), Positives = 115/481 (23%), Gaps = 93/481 (19%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+ + Y + S + LE + +A + + + A
Sbjct: 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 106 SEAVKLDPQNACAHTHC-------------------------GILYKDEGRLVEAAESYH 140
+ L+ A + L +
Sbjct: 117 -SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175
Query: 141 KALSADPSYKPAAECLAIVLTD-----------------LGTSLKLAGNTQDGIQKYYEA 183
L + A L K +
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
+ + A A G+ + A +++ P +Y + + ++ + +
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQE 294
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEG 303
+++ + ++P + + L
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQ------------------------------ 324
Query: 304 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363
D ++KA N L + KF + F+ P E
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Query: 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT----------------VQGKM 407
I DR + D A++ Y +A ++ + +G + + K
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467
+AA +++ KA +P +A L L I AI+ +E + Q
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Query: 468 A 468
A
Sbjct: 505 A 505
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 8e-70
Identities = 57/446 (12%), Positives = 120/446 (26%), Gaps = 45/446 (10%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + F +A+ Y+ +E D + C + ++A+++ P
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
++ A + G +A LS + + A + +L + +
Sbjct: 92 HSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGA--SIEPMLERNLNKQAMKVLNE 148
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM--------QYDTALGCYEKAALERPMYAE 226
+ + ++ P G+ S L YDTA A +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 227 AYCNM--GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+ ++ K+ S ++ + N +A I
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN----------- 257
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
++ ++++ + ++ L + +
Sbjct: 258 -------------------NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFK 297
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404
F++ A NP + G +Y + A E +Q A S+ P L + Q
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357
Query: 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
GK + + PT E + D G AI Y+ +++
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417
Query: 465 RLLAMNYINEGHD-DKLFEAHRDWGK 489
+ D K
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEK 443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 240 bits (613), Expect = 2e-69
Identities = 66/404 (16%), Positives = 128/404 (31%), Gaps = 65/404 (16%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
+ + + + + A AL L++ + L ++ + + L
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
A A + GI + + L++A ++++ P+ L +L N+
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN--------SYIFLALTLADKENS 292
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y +
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293
+ +G + A + P A LTD G
Sbjct: 353 LLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG-------------------- 392
Query: 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---------------- 337
D + + Y A +G G+
Sbjct: 393 ----------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
KF+ AI A +P +A L + + +D+A+E ++ + + + L
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 441
A A I+K + A+P + YR G +
Sbjct: 503 T---------FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 3e-65
Identities = 57/355 (16%), Positives = 116/355 (32%), Gaps = 24/355 (6%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G + + PS + A A+ L + G A N + I+ Y A+++DP+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQA---YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
Y N+ Y + + KA +P +++A ++ G+ A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
Query: 250 RCLAVSPNFEIAKNNMAI--ALTDLGTKTYGRALLLFRLNGSNF---------------Q 292
L+++ +F+ A + L K L GS
Sbjct: 118 -VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--MLKFDMAIVFYELAF 350
V + + A AL + D Y + + + +
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410
+ A A G+ + ++NL A Q ++++ P S L + +
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295
Query: 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ +KA+ NP Y Y + G +Y A + +++ ++P++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 7e-64
Identities = 62/401 (15%), Positives = 121/401 (30%), Gaps = 30/401 (7%)
Query: 63 KFVDALALYEIVLEKD----SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
++ + +G A + A++LDP
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
+++ Y G L + E KAL P + A A L GN D +
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-------GNFTDAM- 113
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238
L ++ + A E A+ + ++ + +
Sbjct: 114 FDLSVLSLNGDFDGASIEP---MLERNLNKQAMKVLNENL------SKDEGRGSQVLPSN 164
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL-LLFRLNGSNFQSPFFE 297
L S ++ L VS + + A AL AL L+ +
Sbjct: 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYAL-------LSDALQRLYSATDEGYLVANDL 217
Query: 298 LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 357
L K + ++ + A A+ G+ + A V + + + +P
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P 276
Query: 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417
+ L + D++N + + +Q A+ + P + + + G +Y + A E +KA
Sbjct: 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 418 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
+ NP Y L L G + + + + P
Sbjct: 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-27
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 5/170 (2%)
Query: 338 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
+P A N G + N ++A++ YQ A+ + PN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453
+N+ Y G ++ E KA+ P +++A G+ + A+ L
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120
Query: 454 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 503
++ D A +L N + +D G+ L S +
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-25
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 303 GDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358
G G + YA + N G + F+ AI +Y+ A +P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418
+N+ Y +L+K +E AL IKP+ S++L G A + +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 419 AANPTYAEA-------------------------YNNLGVLYRDAGSISLAIDAYEQCLK 453
+ N + A + S++ ++ L+
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 454 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
+ + ++ + A+ +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 9/121 (7%)
Query: 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD 103
K S KF A+ L E D + +A IG A +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
F ++ L + + + K L ADP E
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAK-------IQKRLRADPIISAKMELTLARYRAK 534
Query: 164 G 164
G
Sbjct: 535 G 535
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 236 bits (603), Expect = 4e-69
Identities = 61/436 (13%), Positives = 128/436 (29%), Gaps = 51/436 (11%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + + DAL+ + ++ D N A+ + + A ++ ++L
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--------DLGTS 166
A G L +G+L EA + + K L ++PS E + ++ +
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
+G+ I + L++ A + + + A+ + A+ + E
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286
A+ + +Y GD E +++ CL + + + + L
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL----- 267
Query: 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMA 342
G + Y+ + + + + + + K A
Sbjct: 268 ---------IRD----GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
Query: 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402
I P A + Y + D+A++ Y+ A N Q L
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY-EQCLKIDPDSRNA 461
+ + + N E I AY + L+ PD+
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQE-----------------IIKAYRKLALQWHPDNFQN 417
Query: 462 GQNRLLA---MNYINE 474
+ + A I
Sbjct: 418 EEEKKKAEKKFIDIAA 433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 3e-60
Identities = 67/389 (17%), Positives = 129/389 (33%), Gaps = 56/389 (14%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
H G+ E ++ K L +LG L AG D +
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHL------------------ELGKKLLAAGQLADAL 46
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
+++ A+ DP AYY V+ + + AL K + + A G +
Sbjct: 47 SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK 106
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKTYGRALLLFRLNGSNFQSPFF 296
+G L+ A +++ L +P+ K + + +D + +AL F
Sbjct: 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS---------- 156
Query: 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
GD +A+ K L A+ + + + AI + A
Sbjct: 157 ------GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV------------Q 404
EA + +Y + + ++ + L + + + + V +
Sbjct: 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Query: 405 GKMDAAAEMIEKAIAANPTYAE----AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460
G+ A E + P+ AE + + + AI + L+++PD+ N
Sbjct: 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN 330
Query: 461 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
A ++R A Y+ E EA +D+
Sbjct: 331 ALKDR--AEAYLIEE---MYDEAIQDYET 354
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 1e-59
Identities = 55/430 (12%), Positives = 112/430 (26%), Gaps = 83/430 (19%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
L + N + ++A +VE H+ G L A F AV DP
Sbjct: 10 GVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD 58
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N A+ ++ G+ A K + + A +L G
Sbjct: 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-------GKLD 111
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + LK +P L + + + +
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQS-------------------QLIKSDEMQRLRSQALN 152
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294
GD +AIA ++ L V + A
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE---------------------- 190
Query: 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354
G+ + ++ K A +A Y + Y ++ ++++ +
Sbjct: 191 --------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 355 HCAEACNNLGVIYK------------DRDNLDKAVECYQMALSIKPNF----SQSLNNLG 398
+ + K A Y+ + +P+ +S +
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302
Query: 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
++ K A + + + P A + Y AI YE + + +
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362
Query: 459 RNAGQNRLLA 468
+ + A
Sbjct: 363 QQIREGLEKA 372
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 4e-46
Identities = 61/334 (18%), Positives = 101/334 (30%), Gaps = 27/334 (8%)
Query: 22 FLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN 81
F K +S P + A +K E + S A + A+A + +LE +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176
Query: 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
E + C + R A A KL N A LY G + +
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236
Query: 142 ALSADPSYKPAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---- 192
L D +K V L + L G D KY +K +P A
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ + +S+ + A+ + P A + Y + AI YE
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 253 AVSPNFEIAKNNMAIALTDLG---TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309
+ N + + + A L + Y + L + R + +I +
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK-------------KQEIIK-- 401
Query: 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343
AY K AL ++ A + + A
Sbjct: 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 4e-46
Identities = 61/436 (13%), Positives = 119/436 (27%), Gaps = 98/436 (22%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFD 103
+ ++Y A + + K AL V++ A + +G L G+L A D
Sbjct: 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL--KQGKLDEAED 115
Query: 104 SFSEAVKLDPQNACAHTHCGILYK---------------DEGRLVEAAESYHKALSADPS 148
F + +K +P L K G A K L
Sbjct: 116 DFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
E A G + I A K+ A+Y + +Y +L ++
Sbjct: 176 DAELRELRAECFIKEG-------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYK------------NRGDLESAIACYERCLAVSP 256
+L + + + + + K G A + YE + P
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288
Query: 257 NFE----IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYY 312
+ +K + + + +
Sbjct: 289 SIAEYTVRSKERICHCFSKDE------------------------------KPVEAIRVC 318
Query: 313 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-- 370
+ L +A+ + AY +D AI YE A N + + L +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378
Query: 371 ---------------DNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414
+ ++ Y ++AL P+ Q+ + AA
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA---- 434
Query: 415 EKAIAANPTYAEAYNN 430
K + ++P + +++
Sbjct: 435 -KEVLSDPEMRKKFDD 449
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 9e-46
Identities = 38/291 (13%), Positives = 79/291 (27%), Gaps = 56/291 (19%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ +++ GV Y ++ + E + +G G L A++ +
Sbjct: 2 HHHHHHSSGVDLGTE-------NLYFQSMAD----VEKHLELGKKLLAAGQLADALSQFH 50
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309
+ P+ IA A +G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMG------------------------------KSKAAL 80
Query: 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN-------- 361
K + + A G + K D A ++ NP E
Sbjct: 81 PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
Query: 362 -------NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414
+ + + A+ L + ++ + +G+ A +
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200
Query: 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ A EA+ + LY G L++ +CLK+D D + +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-33
Identities = 34/267 (12%), Positives = 67/267 (25%), Gaps = 56/267 (20%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282
M+ + + GV ++A E + L
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAA---------- 39
Query: 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342
G + ++ + A+ + A Y + M K A
Sbjct: 40 --------------------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79
Query: 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS----------- 391
+ A G + + LD+A + ++ L P+ +
Sbjct: 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139
Query: 392 ----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
Q L + + G AA ++K + AE + G AI
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 448 YEQCLKIDPDSRNAGQNRLLAMNYINE 474
+ K+ D+ A + +
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 8e-28
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
+ ++ GV G + ++ E LG L A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFH 50
Query: 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 441
A+ P+ + V+ GK AA + K I + A G L G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 442 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
A D +++ LK +P + + + G
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 2e-68
Identities = 42/356 (11%), Positives = 102/356 (28%), Gaps = 47/356 (13%)
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
E+V +N + + + DP + L +L
Sbjct: 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL 69
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCYEKAALERP 222
+ ++ + + P +++ +G Y + + + A KA
Sbjct: 70 N-------KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282
Y A+ G + + + A+A Y + + + +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN--------- 173
Query: 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342
+ ++ +AL M+ +GV + ++ A
Sbjct: 174 ---------------------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA 212
Query: 343 IVFYELAFHFNPHC---------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
++ A NNLG + + +A++ ++ AL + P + +
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272
Query: 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
+ +G ++++ G + A + A+ + LG S A +
Sbjct: 273 YSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 1e-67
Identities = 50/321 (15%), Positives = 92/321 (28%), Gaps = 40/321 (12%)
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
V+ L + + + ++ DP +A EL + + K
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 219 LERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277
P ++ +G Y G E A + + + A +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---- 139
Query: 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 337
+ +Q +A Y A M +G+ YG
Sbjct: 140 --------------------------EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------KP 388
+A F+ A P + +GV+ A + + AL
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 389 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 448
+ LNNLG V K A + +A+ P A Y+ +G ++ G+ A+D +
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293
Query: 449 EQCLKIDPDSRNAGQNRLLAM 469
L + D + +
Sbjct: 294 HTALGLRRDDTFSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 2e-67
Identities = 52/343 (15%), Positives = 116/343 (33%), Gaps = 39/343 (11%)
Query: 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
++ N++ + ++ + S ++ DP +A + + E
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPA 193
HK + PS + +G + G+ + ++Y A ++ Y PA
Sbjct: 75 LFYLSHKLVDLYPSN-------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ G ++ ++D A+ Y AA +G+ Y + + A + + L+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 254 VSPNFEIAKNNMAIALTDLG-----TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQG 308
++P + + + G K + AL + G+
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD-------------- 233
Query: 309 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 368
+ + NLG ++ K+ A+ ++ A P A + +G I+
Sbjct: 234 ------------KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281
Query: 369 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411
N + AV+ + AL ++ + + S+ LG + A
Sbjct: 282 LMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 2e-51
Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 51/307 (16%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVK 110
+ L NK + L +++ N + G M G A S+A
Sbjct: 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV--GHKNEHARRYLSKATT 119
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
L+ A G + E +A +Y A + + + KLA
Sbjct: 120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLA 178
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------ALER 221
+ + +AL I P + +GVV + ++ TA + A +
Sbjct: 179 ------ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
+ N+G + + A+ + + L + P + + + +G
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG-------- 284
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341
+ V Y+ AL ++ LG +
Sbjct: 285 ----------------------NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322
Query: 342 AIVFYEL 348
A + ++
Sbjct: 323 AYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-47
Identities = 33/274 (12%), Positives = 65/274 (23%), Gaps = 39/274 (14%)
Query: 212 GCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
G Y K + + ++ + D + + P
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323
L +L N+ K +
Sbjct: 61 VHIGTLVELN------------------------------KANELFYLSHKLVDLYPSNP 90
Query: 324 DAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+ + +G Y + + A + A A G + D+A+ Y
Sbjct: 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
A + + +G+ Y + A +A++ P + +GV+ G
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK 210
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
A + L+ N N GH
Sbjct: 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 7e-45
Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 20/238 (8%)
Query: 49 KDALSYANI----LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ +S+ + L +K A + A I G +++ A +
Sbjct: 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ A +L + G+ Y A + +ALS P V+ ++G
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVG 200
Query: 165 TSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYE 215
G + + + +AL+ + P NLG V +L +Y AL +
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+A + P A Y +G I+ G+ E+A+ + L + + + + +
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 3e-67
Identities = 63/444 (14%), Positives = 125/444 (28%), Gaps = 61/444 (13%)
Query: 55 ANILRSRNKFVDALALYE---IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A+ KF DA+ + + + ++E + + + Q + + F A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 112 DPQNACAHTHCGIL-------------YKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ + + + +Y ++ AD L
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199
Query: 159 VLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + K A ++ + K E K+ A + + G+ A
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+KA +E +Y M +I +R D +++ L + N + L
Sbjct: 260 IKKA-IELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318
Query: 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333
+ +Q + KA + L
Sbjct: 319 ------------------------------NYDQAGKDFDKAKELDPENIFPYIQLACLA 348
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
KFD + A P E N I D+++ DKA++ Y +A+ ++
Sbjct: 349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408
Query: 394 LNNLGVVYT---------VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444
+ + A ++EKA +P +A L + I A
Sbjct: 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468
Query: 445 IDAYEQCLKIDPDSRNAGQNRLLA 468
I +E+ + Q A
Sbjct: 469 ITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 2e-66
Identities = 60/449 (13%), Positives = 119/449 (26%), Gaps = 64/449 (14%)
Query: 50 DALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
D + Y+N S + + LE + + + + A S
Sbjct: 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97
Query: 107 E-AVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
++ D +A + + +L E A + +
Sbjct: 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157
Query: 164 GTSLKL------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE------------LM 205
S+ + Y E+ + D NL E
Sbjct: 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
++ L + + A + + G+ + D A ++ + + P + M
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYM 276
Query: 266 AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADA 325
A+ + D D + Y+ KAL + + +
Sbjct: 277 ALIMADRN------------------------------DSTEYYNYFDKALKLDSNNSSV 306
Query: 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385
Y+ G + +D A ++ A +P L + + D + A
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366
Query: 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA------- 438
P + N + T + D A + + AI Y + L A
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426
Query: 439 --GSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ A + E+ K+DP S A
Sbjct: 427 TVENFIEATNLLEKASKLDPRSEQAKIGL 455
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 2e-65
Identities = 53/421 (12%), Positives = 116/421 (27%), Gaps = 56/421 (13%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF----- 105
L+ + + + KF D E + + K L F F
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176
Query: 106 ----SEAVKLDPQNACA-----HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
E+ + D + K + +AA + + L + + E L
Sbjct: 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI L G L + + +A+++ P +Y + ++ ++ ++K
Sbjct: 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDK 295
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
A + Y + G + + + A +++ + P +A
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN--- 352
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336
+ + +A + +
Sbjct: 353 ---------------------------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385
Query: 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIY---------KDRDNLDKAVECYQMALSIK 387
FD A+ Y+LA + + +N +A + A +
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
P Q+ L + Q +D A + E++ T E + + +A + I +
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRS 503
Query: 448 Y 448
Sbjct: 504 D 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 1e-61
Identities = 54/443 (12%), Positives = 123/443 (27%), Gaps = 50/443 (11%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
K AL+ N K+ DA+ Y LE + + C + +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMS 62
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
++A++L P + + G+ +A LS + + A+ + +
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDAS---IEPMLERNL 118
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-------------GVVYSELMQYDTALG 212
+ + ++ A + + + + +
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 213 CYEKAALERPMYAEAYCNM-----GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
Y+++ N+ K A +E L + E K +AI
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY 327
+L G + L+ D KKA+ ++
Sbjct: 239 SLEHTGIFKF-----------------------LKNDPLGAHEDIKKAIELF-PRVNSYI 274
Query: 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387
+ + + +++ A + + + + G + N D+A + + A +
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
P L + + K D + +A P E N + D A+
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394
Query: 448 YEQCLKIDPDSRNAGQNRLLAMN 470
Y+ ++++ +
Sbjct: 395 YDLAIELENKLDGIYVGIAPLVG 417
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 3e-57
Identities = 58/391 (14%), Positives = 113/391 (28%), Gaps = 68/391 (17%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIG------------KGICLQMQNMGRLAFDSFSE 107
K A Y+ E D + + + D +E
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
KL + A + H GI + + A E KA+ P + +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--------SYIYMALIM 280
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
++ + + +ALK+D + + YY+ G + L YD A ++KA P
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287
Y + + + + P N A LTD
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-------------- 386
Query: 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---------K 338
D ++ + Y A+ + G+
Sbjct: 387 ----------------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
F A E A +P +A L + ++++D+A+ ++ + + + L +
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490
Query: 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429
A A +++ I ++P A+
Sbjct: 491 ---------FAEAAKVQQRIRSDPVLAKKIQ 512
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-55
Identities = 39/359 (10%), Positives = 100/359 (27%), Gaps = 23/359 (6%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
+ A A G + + +A + Y+ AL + ++L G+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------PVFYSNLSACYVSVGD 54
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---RPMYAEAYC 229
+ ++ +AL++ P Y+ L ++ A+ +L E
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289
+ + L+ + A K L S
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER--------KDKQENLPSVTSMAS 166
Query: 290 NFQS--PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVFY 346
F P + ++ ++ + + F+ +
Sbjct: 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226
Query: 347 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406
A + + G+ +++ A E + A+ + P S + ++ +
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRND 285
Query: 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+KA+ + + Y + G + + A +++ ++DP++
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 39/277 (14%), Positives = 79/277 (28%), Gaps = 54/277 (19%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
E+ YA A + G + + AI Y L + + + +N++ +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSV------- 52
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
GD+ + V KAL Y+ + A + KF
Sbjct: 53 -----------------------GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89
Query: 340 DMAIVFYE---LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ---- 392
A+ L FN E + + L + A + S
Sbjct: 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149
Query: 393 ---------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 443
+ K + +++ A+ +NL R S
Sbjct: 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLY--KRSPESYDK 207
Query: 444 AIDAYEQCLK-----IDPDSRNAGQNRLLAMNYINEG 475
A +++ + + +D ++ + LA++ + G
Sbjct: 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 8e-65
Identities = 62/438 (14%), Positives = 122/438 (27%), Gaps = 52/438 (11%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-------MGRL--AFDSF 105
A + + + AL E + N MGRL
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 106 SEAVKLDPQNACAH-THCGILYKDEG---------RLVEAAESYHKALSADPSYKPAAEC 155
+ + + + + L +EG + A + KAL P
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----YDTAL 211
LAI L +Q+ I +A++++P L + ++ +
Sbjct: 178 LAIASYRLDN----WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
E+A + P + + Y+ + + + AI ++ L PN +
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 331
+ KL I VA+ KKA N + L
Sbjct: 294 KVFQVMNLRENGMYGKR-----------KLLELIGHAVAHLKKADEANDNLFRVCSILAS 342
Query: 332 AYGEMLKFDMAIVFYELAFHFNPHCAEAC---NNLGVI-YKDRDNLDKAVECYQMALSIK 387
+ +++ A +++ F G DKA+ + + I
Sbjct: 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
+ D ++ + ++ N +EA + L L + A +
Sbjct: 403 QKSREKEKMK----------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452
Query: 448 YEQCLKIDPDSRNAGQNR 465
E+ L+ +A
Sbjct: 453 SERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 2e-50
Identities = 53/396 (13%), Positives = 93/396 (23%), Gaps = 94/396 (23%)
Query: 103 DSFSEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
D + + A L +G+ A E KA
Sbjct: 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------- 88
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ + N VY + + +K
Sbjct: 89 -------------------------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123
Query: 221 RPMYA--------EAYCNMG--VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
++ E C G + E A C+E+ L P + +AIA
Sbjct: 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183
Query: 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 330
L + ++A+ N L
Sbjct: 184 RLDNW---------------------------PPSQNAIDPLRQAIRLNPDNQYLKVLLA 216
Query: 331 VAYGEMLKF----DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 386
+ +M + E A P + + Y+ +D DKA+E + AL
Sbjct: 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276
Query: 387 KPNFSQSLNNLGVVYTVQGKMDA-------------------AAEMIEKAIAANPTYAEA 427
PN + +G Y + A ++KA AN
Sbjct: 277 IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336
Query: 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
+ L L+ A A +++ +
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 5e-45
Identities = 47/350 (13%), Positives = 94/350 (26%), Gaps = 59/350 (16%)
Query: 167 LKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
++ + D K + + A L + Q + AL C KA
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 218 --ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
+ N +Y + G L ++ V F +
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI------ESPEL 138
Query: 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY-- 333
+ G+ + + ++KAL + L +A
Sbjct: 139 DCEEGWTRLKCGGNQNE--------------RAKVCFEKALEKKPKNPEFTSGLAIASYR 184
Query: 334 -GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY----KDRDNLDKAVECYQMALSIKP 388
AI A NP L + ++ + + + + AL P
Sbjct: 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP 244
Query: 389 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------- 440
+ L + Y + + D A E+++KA+ P A + +G YR
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304
Query: 441 -----------ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
I A+ ++ + + + LA + ++
Sbjct: 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI--LASLHALADQYEE 352
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 8e-34
Identities = 40/352 (11%), Positives = 85/352 (24%), Gaps = 100/352 (28%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
AL + + + L E LEK G + + ++ A + +A++
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
P NA H G Y+ + V + KL
Sbjct: 276 YIPNNAYLHCQIGCCYRAKVFQVMNLRENG----------------------MYGKRKLL 313
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA--- 227
+ +A + + + L +++ QY+ A ++K +
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373
Query: 228 YCNMGVI-YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286
+ G + AI + + ++ K M L +
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR-EKEKMKDKLQKI-------------- 418
Query: 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346
K L N ++A++
Sbjct: 419 -------------------------AKMRLSKNGADSEALHV------------------ 435
Query: 347 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
L + + + + +A E + L + + G
Sbjct: 436 ----------------LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 235 bits (600), Expect = 2e-64
Identities = 46/429 (10%), Positives = 108/429 (25%), Gaps = 19/429 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A G + + +A P A +
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASHDG 336
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + G L L +A P
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV 396
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285
A + G + ++ + + ++P+ +A + L T R L +
Sbjct: 397 VAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALE--TVQRLLPVLC 453
Query: 286 ----LNGSNFQSPFFELVKLE--GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
L + + + + Q + +A A+ + +
Sbjct: 454 QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATV 513
Query: 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399
+ A P A + G + + + + + A + P+ ++ + G
Sbjct: 514 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 573
Query: 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459
+ ++ +A A + + ++ + Q + P
Sbjct: 574 GKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQV 633
Query: 460 NAGQNRLLA 468
A +
Sbjct: 634 VAIASHDGG 642
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 5e-63
Identities = 46/435 (10%), Positives = 108/435 (24%), Gaps = 23/435 (5%)
Query: 45 GFEGKDALSYANILRSRNKFVDAL-----ALYEIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ + A R ++A+ AL L V A Q +
Sbjct: 152 QLDTGQLVKIAK--RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+A L P A + + +A P +
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ-------VVA 262
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ + Q + +A + P A + G L L +A
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
P A + + ++ + + ++P+ +A + L T R
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE--TVQR 380
Query: 280 ALLLFR----LNGSNFQSPFFEL--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333
L + L + + + + + +A A+ +
Sbjct: 381 LLPVLCQAHGLT-PDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK 439
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
+ + P A + + + + + + A + P+ +
Sbjct: 440 QALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVA 499
Query: 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453
+ + + ++ +A P A + G + ++ + Q
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559
Query: 454 IDPDSRNAGQNRLLA 468
+ PD A +
Sbjct: 560 LTPDQVVAIASNGGG 574
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 3e-62
Identities = 42/433 (9%), Positives = 108/433 (24%), Gaps = 27/433 (6%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFD 103
++ A+ ++ L + V A G Q + +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG---GKQALETVQRLLP 416
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
+A L P A + + + P+ + +
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ-------VVAIASH 469
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
+ Q + +A + P A + L L +A P
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT-----KTYG 278
A + G + ++ + + ++P+ +A + L T
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589
Query: 279 RALLLFRLNGS---NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
+A L ++ + L + + + +A A+ +
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQAL----ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQA 645
Query: 336 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395
+ + A P A + G + + + + + A + ++
Sbjct: 646 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIA 705
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
+ + ++ +A P A + G + ++ + Q +
Sbjct: 706 SNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 456 PDSRNAGQNRLLA 468
P A + +
Sbjct: 766 PAQVVAIASNIGG 778
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 3e-62
Identities = 41/430 (9%), Positives = 105/430 (24%), Gaps = 21/430 (4%)
Query: 49 KDALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
++ A+ ++ L + V A Q +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+A L P A + + +A P + + G
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-------VVAIASHGG 302
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
+ Q + +A + P A + L L +A P
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM----AIALTDLGTKTYGRAL 281
A + G + ++ + + ++P+ +A + A+ +A
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAH 422
Query: 282 LLFRLNG---SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
L ++ L + + + + A+ + +
Sbjct: 423 GLTPDQVVAIASHDGGKQAL----ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALET 478
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
+ A P A + + + + + A + P+ ++ + G
Sbjct: 479 VQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNG 538
Query: 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
+ ++ +A P A + G + ++ + Q +
Sbjct: 539 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598
Query: 459 RNAGQNRLLA 468
A + +
Sbjct: 599 VVAIASNIGG 608
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 216 bits (551), Expect = 3e-58
Identities = 44/403 (10%), Positives = 102/403 (25%), Gaps = 38/403 (9%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
DA L L+ D+G + +G M+ + + L P A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + +A P+ + + + Q + +A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ P A + L L +A P A + G + ++ +
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDI 305
+ ++P+ +A + L T R L
Sbjct: 315 PVLCQAHGLTPDQVVAIASHDGGKQALE--TVQRLL------------------------ 348
Query: 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 365
+A A+ + G + + A P A + G
Sbjct: 349 ----PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 404
Query: 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425
+ + + + + A + P+ ++ + + ++ + P
Sbjct: 405 K-QALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV 463
Query: 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
A + + ++ + Q + PD A + +
Sbjct: 464 VAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 6e-56
Identities = 40/409 (9%), Positives = 94/409 (22%), Gaps = 37/409 (9%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S+ ++ L + V A Q + +A L
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P A + + +A P + + G +
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ-------VVAIASNGGGKQALET 546
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q + +A + P A + G L L +A + A +
Sbjct: 547 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNI 606
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
+ ++ + + ++P +A + L T R L
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET--VQRLL----------- 653
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
+A A+ + G + + A
Sbjct: 654 -----------------PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 696
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
A + + + + + + A + P+ ++ + G +
Sbjct: 697 TQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 756
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
++ +A P A + + ++ + Q + A
Sbjct: 757 VLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 2e-51
Identities = 39/414 (9%), Positives = 92/414 (22%), Gaps = 37/414 (8%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A Q + +A L P
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A P A + G + Q
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA-------IASNGGGKQALETVQ 582
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + A + L L +A P A +
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294
+ ++ + + ++P+ +A + L T R L
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET--VQRLL------------- 687
Query: 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354
+A A+ + + + A P
Sbjct: 688 ---------------PVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414
A + G + + + + + A + P ++ + + ++
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
+ A + + ++ + Q + D A + +
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 2e-48
Identities = 39/419 (9%), Positives = 95/419 (22%), Gaps = 19/419 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A G Q + +A L P
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A A L T Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALET-------VQ 616
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + P A + L L +A P A + G
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT-----KTYGRALLLFRLNG- 288
+ ++ + + ++ +A + L T +A L
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736
Query: 289 --SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346
++ L + + + +A A+ + + +
Sbjct: 737 AIASNGGGKQAL----ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 347 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406
A + + + + + + A + + ++ +
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALET 852
Query: 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ ++ + P A + + ++ + Q + D A +
Sbjct: 853 VQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN 911
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-47
Identities = 46/393 (11%), Positives = 97/393 (24%), Gaps = 40/393 (10%)
Query: 83 EAHIGKG-----ICLQMQNMGRLAF--DSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
EA +G G I Q+ L ++ + P+ R +EA
Sbjct: 79 EALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEA 138
Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195
+ L P + + I G + L + P A
Sbjct: 139 LLTDAGELRGPPLQLDTGQLVKI--AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIA 196
Query: 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
+ L L +A P A + + ++ + + +
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256
Query: 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
P+ +A + L T R L +A
Sbjct: 257 PDQVVAIASNIGGKQALET--VQRLL----------------------------PVLCQA 286
Query: 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 375
A+ + G + + A P A + + + + +
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 346
Query: 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435
+ A + P+ ++ + G + ++ +A P A + G
Sbjct: 347 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-K 405
Query: 436 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
+ ++ + Q + PD A +
Sbjct: 406 QALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 5e-41
Identities = 39/444 (8%), Positives = 101/444 (22%), Gaps = 42/444 (9%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
++ L + V A Q + +A L P
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G + + +A + + + Q
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ-------VVAIASNNGGKQALETVQ 718
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A + P A + G L L +A P A +
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR----LNGSN 290
+ ++ + + ++ +A + L +T R L + L
Sbjct: 779 KQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQAL--ETVQRLLPVLCQAHGLTQDQ 836
Query: 291 FQSPFFELVKLE--GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348
+ + + + + + + A+ + + +
Sbjct: 837 VVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQ 896
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408
A + G + + + + + + P+ ++ + +
Sbjct: 897 DHGLTLDQVVAIASNGG-KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQ 955
Query: 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------------------- 443
++ + P A + G ++
Sbjct: 956 RLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVALACLGGR 1015
Query: 444 -AIDAYEQCLKIDPDSRNAGQNRL 466
A+DA ++ L P+ R+
Sbjct: 1016 PAMDAVKKGLPHAPELIRRVNRRI 1039
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 144 bits (363), Expect = 3e-35
Identities = 35/361 (9%), Positives = 80/361 (22%), Gaps = 36/361 (9%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYH-KALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
Q + A + + G + E K S + A + +
Sbjct: 41 QPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAA 100
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Y + P + AL P+ + +
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 233 VIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287
+ + A+ L +P +A + L T R L
Sbjct: 161 IAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALET--VQRLL------ 212
Query: 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347
+A A+ + + +
Sbjct: 213 ----------------------PVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLC 250
Query: 348 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407
A P A + + + + + + A + P+ ++ + G +
Sbjct: 251 QAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETV 310
Query: 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467
++ +A P A + + ++ + Q + PD A +
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 370
Query: 468 A 468
Sbjct: 371 G 371
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-63
Identities = 45/273 (16%), Positives = 93/273 (34%), Gaps = 33/273 (12%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+ +H + P + ++ G+ + + + +A++ + A
Sbjct: 3 SSHHHHHHSSGLVPR---GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y N + S + + + AL Y+KA A AY G +Y + + A +E+ L
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 254 VSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYK 313
+ L L + Y +
Sbjct: 120 AGMENGDLFYMLGTVLVKL------------------------------EQPKLALPYLQ 149
Query: 314 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 373
+A+ N + +A + G+ D A+ + +P A+A N GV Y ++N
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Query: 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406
+KA+E A+ I+P+ +L+ ++
Sbjct: 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 5e-62
Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 34/271 (12%)
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKN 263
++ + ++ P + G R GD E A + + + + I
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323
N A L+ + ++ + +A+Y KAL + A
Sbjct: 62 NFANLLSSVN------------------------------ELERALAFYDKALELDSSAA 91
Query: 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 383
A Y G Y + A +E A + LG + + A+ Q A
Sbjct: 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151
Query: 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 443
+ + N +++ G+ +G +D A +P +A+A+ N GV Y +
Sbjct: 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211
Query: 444 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 474
A++ ++ + I PD A + L ++ +
Sbjct: 212 ALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 4e-56
Identities = 47/273 (17%), Positives = 92/273 (33%), Gaps = 41/273 (15%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCG----ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+ + L P+ + + G + G +AAE++ KA+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------- 56
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI + L + + Y +AL++D A AYY G VY Y A +EK
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
A + + +G + + A+ +R + ++ N A+ + L +
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE---- 172
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336
G +++ ++ + + +ADA YN GV Y
Sbjct: 173 --------------------------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206
Query: 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
+ A+ + A P A + ++
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 1e-52
Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 7/224 (3%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
+ A + +E++ + +I L N A + +A+
Sbjct: 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+LD A A+ G +Y + EA + + KAL A + LGT L
Sbjct: 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVK 137
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
+ + A++++ + A + G+ + D AL + + P +A+A+
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
N GV Y + + E A+ ++ + + P+ +A + +
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 2e-49
Identities = 36/225 (16%), Positives = 69/225 (30%), Gaps = 26/225 (11%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
+ S+ + + P + G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRG--------------------------S 34
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
GD + + KA+ N A N + + + A+ FY+ A + A A
Sbjct: 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
G +Y ++ +A + ++ AL LG V + A +++A+
Sbjct: 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
N EA G+ + G + A+ + + DP +A N
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 14/197 (7%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFD 103
+DA+ Y AN+L S N+ ALA Y+ LE DS A+ G G A D
Sbjct: 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV--VKEMYKEAKD 112
Query: 104 SFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
F +A++ +N G + + A +A+ + +
Sbjct: 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-------TEARFQF 165
Query: 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223
G L G + + ++ + DP +A A+YN GV Y+ + AL +KA +P
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 224 YAEAYCNMGVIYKNRGD 240
+ A ++ +
Sbjct: 226 HMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 7/153 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N+ + + +A ++E L N + G L +LA AV+L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ A G+ +EG L EA + DP + A + N +
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE-------NRE 210
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
++ +A+ I P + A + ++ +
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 3e-62
Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 35/280 (12%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ + +++ G+V D K R +AY +G+ Y RG+ E A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDI 305
+ L + P+ A +A+ +
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEM------------------------------EP 87
Query: 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNL 363
Y+KAL + A + N G E +++ A P + NL
Sbjct: 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147
Query: 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423
G++ +A E ++ +L + N + + + + A + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
A + L + A Q ++ P S +
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-54
Identities = 43/284 (15%), Positives = 77/284 (27%), Gaps = 42/284 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ + H G++ + ++ K LG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEA-------RDAYIQLGLGYLQR 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
GNT+ +AL+IDP A A+ L VV+ M+ A Y KA A N
Sbjct: 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110
Query: 231 MGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288
G + E A + P N+ + +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM---------------- 154
Query: 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348
Q Y++K+L N + + + ++ A +Y+L
Sbjct: 155 --------------KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 392
A + + K ++ D A + P +
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 8/189 (4%)
Query: 312 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371
K DA LG+ Y + + A V A +P A+A L V+++
Sbjct: 26 PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85
Query: 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYN 429
A E Y+ AL+ ++ LNN G Q + + A + + +A P + +
Sbjct: 86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145
Query: 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
NLG++ + A + +E+ L+++ + + +A E + A R +
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE--MADLLYKER---EYVPA-RQYYD 199
Query: 490 RFMRLYSQY 498
F + Q
Sbjct: 200 LFAQGGGQN 208
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 14/235 (5%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
+++ L R + + +A+I G+ + A +A+++DP
Sbjct: 10 HSSGLVPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+A AH ++++ E A E Y KAL++D A VL + G L
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRY 121
Query: 174 QDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
++ Q+ EA + + P + + NLG+V ++ + A +EK+ M
Sbjct: 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT----KTYGRALL 282
+ + A Y+ + +YG L
Sbjct: 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 7e-41
Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 9/211 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
R A LE D + +AH + Q + +LA + + +A+ D +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGN 172
NA + G ++ R EA + +A P + V +LG
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------SRVFENLGLVSLQMKK 156
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ + ++L+++ + + + + +Y A Y+ A A +
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
+ K D ++A + + + P +
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 16/103 (15%), Positives = 25/103 (24%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ K A +E L + + L + A + + Q
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
NA + L K AA + P E A
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 8e-62
Identities = 46/295 (15%), Positives = 90/295 (30%), Gaps = 38/295 (12%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALK----IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278
RP E + +G+ G+ ++A ++ L + P + A N IAL G
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG----- 125
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
+ + L +A ++ +
Sbjct: 126 -------------------------RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 160
Query: 339 FDMAIVF---YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395
V +E + LG I ++ +++ S+ + S++
Sbjct: 161 KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNF 219
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
LG Y G +D+A + + A+A N + + G + +Q
Sbjct: 220 YLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 9e-57
Identities = 43/300 (14%), Positives = 82/300 (27%), Gaps = 35/300 (11%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
++ + E L + D A +L + G G
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDER-------AQLLYERGVLYDSLGL 58
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ +AL I P + LG+ ++ +D A ++ P Y A+ N G
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
+ G + A PN + +A L K L
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK---------- 168
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
+++K+ W + + LG E +
Sbjct: 169 -----------------QHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSL 210
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
H +E LG Y +LD A +++A++ + + ++ G+
Sbjct: 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 5e-54
Identities = 43/291 (14%), Positives = 88/291 (30%), Gaps = 38/291 (13%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIA 246
L V +Q + L E+ AL A+ GV+Y + G A
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306
+ + LA+ P+ N + I LT G + +
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAG------------------------------NFD 94
Query: 307 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366
+ L + Y A N G+A + +A + +P+ L +
Sbjct: 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154
Query: 367 YKDRDNLDKA---VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423
+ D + ++ + + ++ LG + Q M+ +
Sbjct: 155 EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEH 213
Query: 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 474
+E LG Y G + A ++ + + + + LL ++ + +
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 4e-46
Identities = 43/337 (12%), Positives = 87/337 (25%), Gaps = 73/337 (21%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDS 104
+ + A L+ + LA E +L D + +G+ + LA +
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND 65
Query: 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
FS+A+ + P + GI G A E++
Sbjct: 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS----------------------- 102
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 224
L++DP Y A+ N G+ + A + P
Sbjct: 103 ------------------VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+ + + + + A ++ S + N + L ++
Sbjct: 145 PFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNI------------ 191
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
+ + + A H ++ + LG Y + D A
Sbjct: 192 ---------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
++LA N H + +
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 5e-37
Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 3/190 (1%)
Query: 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353
P ++ E + + + A +Y GV Y + +A + A
Sbjct: 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413
P E N LG+ N D A E + L + P ++ + N G+ G+ A +
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133
Query: 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
+ +P L + + A + +Q + + + I+
Sbjct: 134 LLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 192
Query: 474 EGHDDKLFEA 483
E +
Sbjct: 193 E--QTLMERL 200
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 11/92 (11%), Positives = 20/92 (21%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
Y + + A E + G A F AV
Sbjct: 183 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHK 141
+ N H + + G+ + +
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-61
Identities = 41/284 (14%), Positives = 78/284 (27%), Gaps = 32/284 (11%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
A G + + Q+D A+ Y KA N +G+ E+AI+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQ 307
+ ++ + +G +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG------------------------------NAYH 90
Query: 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 367
+ KK + Y + ++ + + E + NP AE G Y
Sbjct: 91 KLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149
Query: 368 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427
+ + AV+ Y + P ++ +N A KAI +P + A
Sbjct: 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209
Query: 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471
Y + A++ + D + N R + Y
Sbjct: 210 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 6e-55
Identities = 38/321 (11%), Positives = 76/321 (23%), Gaps = 73/321 (22%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
A G + + EA E Y+KA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKA------------------------------ 31
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
++ N E +Y+TA+ A + Y +
Sbjct: 32 -----------WELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
+ G+ + ++ + + A LT L
Sbjct: 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKL-------------------- 118
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
+ + + + Y N A+ G Y + A+ Y
Sbjct: 119 ----------RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
P A +N + +A+ A+ PNF ++ + +A E
Sbjct: 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228
Query: 413 MIEKAIAANPTYAEAYNNLGV 433
++ A + + +
Sbjct: 229 TLDAARTKDAEVNNGSSAREI 249
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 37/280 (13%), Positives = 68/280 (24%), Gaps = 43/280 (15%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
N +F +A+ Y E ++ + G A + ++AV+
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEY--EKGEYETAISTLNDAVEQG 68
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
+ + + G K + A +LT L N
Sbjct: 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LTEHRTADILTKLR-------N 120
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
+ ++K ++P A G Y + A+ Y + P A Y N
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
AIA + + PNF A A A +
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-------------------- 220
Query: 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332
+ + A + + +
Sbjct: 221 ----------KEYASALETLDAARTKDAEVNNGSSAREID 250
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 5e-44
Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 8/219 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + ++ A++ +E+ + + ++ +
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ H + + + +P A G +
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWP 156
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ ++ Y E +K P A Y N ++LM + A+ KA + P + AY
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ SA+ + + I
Sbjct: 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-31
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 8/188 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ L + +E ++ H L ++P+
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A G Y + A ++Y + + P A L L +
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFP 190
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ I +A++ DP++ AY + +Y +AL + A + +
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 235 YKNRGDLE 242
+
Sbjct: 251 QLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
+ + G + + D A E KA + NN + G AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 448 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD 506
++ + R + + I + D K+ + Y + + T D
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-----NAYHKLGDL-KKTIEYYQKSLTEHRTAD 113
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 2e-60
Identities = 41/291 (14%), Positives = 76/291 (26%), Gaps = 44/291 (15%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG---CYEKAAL 219
L N + I+ + + + Y V Y EL +YD A Y
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
+ + G I +G AI Y+ + + + G
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------ 122
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
+ + Y +K + Y LG AY ++
Sbjct: 123 ------------------------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158
Query: 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSI--------KP 388
A + P+ +D K A Y+ + + K
Sbjct: 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218
Query: 389 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439
++ + YT+ A + +A +PT +A + L +
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 3e-57
Identities = 43/298 (14%), Positives = 74/298 (24%), Gaps = 44/298 (14%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA---CYE 249
+ + Y A+ + K ++ Y V Y + A Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309
+ + L G + +
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKG------------------------------QDSLAI 94
Query: 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
Y+ A+ + D +G + F +AI + E + LG Y
Sbjct: 95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154
Query: 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAI-------- 418
KA + L +KPN Q K A EK I
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
Query: 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
EA + Y A A++ L +DP ++ A + + + + H
Sbjct: 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 4e-57
Identities = 40/303 (13%), Positives = 83/303 (27%), Gaps = 45/303 (14%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N EA E ++K + + A+ +L LA Q
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA-KYDLA---Q 57
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
I+ Y+ + + + G + + Q A+ Y+ A + Y +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294
+ N+G+ AI E+ + + + A
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK--------------------- 156
Query: 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYELA-- 349
+ + + + K L + A K +A +YE
Sbjct: 157 ---------EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 350 ------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403
+ EA + Y + KA ++ L++ P ++++ L +
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
Query: 404 QGK 406
Sbjct: 268 HHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 7e-51
Identities = 31/256 (12%), Positives = 63/256 (24%), Gaps = 31/256 (12%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282
M + + AI + + A N N A+ +L Y A
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK--YDLAQK 58
Query: 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342
Y + + G + + +A
Sbjct: 59 DI-------------------------ETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93
Query: 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402
I Y+ A + + +G + ++ N A++ + + + LG Y
Sbjct: 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Query: 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS---LAIDAYEQCLKIDPDSR 459
+ A K + P Y + LA YE+ +++
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213
Query: 460 NAGQNRLLAMNYINEG 475
++ L
Sbjct: 214 AKYKDE-LIEANEYIA 228
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-49
Identities = 41/331 (12%), Positives = 87/331 (26%), Gaps = 85/331 (25%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL-----AFDSFS 106
YA+ L N + +A+ ++ + K + + + +C + + +++
Sbjct: 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY--YELAKYDLAQKDIETYF 64
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
V + + G + +G+ A + Y
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA------------------------- 99
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
A+ D Y +G + + A+ EK +
Sbjct: 100 ----------------AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT-YGRALLLFR 285
+ +G Y + A + + + L + PN I A A T G A
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK---- 199
Query: 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKAL--------YYNWHYADAMYNLGVAYGEML 337
YY+K + Y +A + Y
Sbjct: 200 ------------------------PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYK 368
A ++ +P +A + L + +
Sbjct: 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-42
Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 5/184 (2%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF---YELAFHFNPHCAEA 359
+ + + + K ++ V Y E+ K+D+A Y + +
Sbjct: 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76
Query: 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419
G I + A++ YQ A+ +G + +G A + +EK I
Sbjct: 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136
Query: 420 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
T + + LG Y A ++ + L++ P+ R A + D K
Sbjct: 137 PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR--ARANAAQDPDTK 194
Query: 480 LFEA 483
A
Sbjct: 195 QGLA 198
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 21/233 (9%)
Query: 55 ANILRSRNKFVDALA---LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
A K+ A Y + G L + LA + AV
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
D + G + ++G A + K + + V +LG +
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-------PKVFYELGQAYYYNK 156
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA--------ALE 220
+ + L++ P+ Y + + A YEK A
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ EA + Y D A A ++ LA+ P + A + + + L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-23
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 4/157 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ ++ F A+ E + + + + G A SF + ++L P
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 115 NACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAE-CLAIVLTDLGTSLKLA 170
+ + + A Y K + + L + +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207
+ + L +DP A L + +
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 4e-59
Identities = 46/230 (20%), Positives = 77/230 (33%), Gaps = 20/230 (8%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
LGV L +YD AL +E+A E P EA + G + A+ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 253 AVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYY 312
A +P + ++ A L + + + +G + Q ++
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAE-------------------DRERGKGYLEQALSVL 107
Query: 313 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 372
K A N YA G+ Y + + D A + A E + L +Y
Sbjct: 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGR 166
Query: 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422
LD+A+ Y AL P ++GK + AA +
Sbjct: 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-50
Identities = 39/238 (16%), Positives = 66/238 (27%), Gaps = 42/238 (17%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG L G + + ALK +P A Y L +L + AL + P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 223 MYAEAYCNMGVIYKN-----------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
Y Y + Y +G LE A++ + V+P + +
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 331
LG + + + A K+AL + L
Sbjct: 131 LG--------------------------ERD----KAEASLKQALALE-DTPEIRSALAE 159
Query: 332 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
Y M + D A+ Y A P + + ++A + +
Sbjct: 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-49
Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 5/197 (2%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ + G+ L A F A+K +PQ+ A G + A E+
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 141 KALSADPSYKPAAECLAIVLTDLG----TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
++ P Y L+ L + G + + +A +++P YAP +
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
G+VY+ L + D A ++ AL E + +Y + G L+ A+A Y + L +P
Sbjct: 124 RGLVYALLGERDKAEASLKQ-ALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 257 NFEIAKNNMAIALTDLG 273
+ A AL G
Sbjct: 183 KDLDLRVRYASALLLKG 199
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 2e-47
Identities = 39/241 (16%), Positives = 72/241 (29%), Gaps = 54/241 (22%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+ +GV G ++A+ +ER L +P A +A LG
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLG----------- 53
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
+N + K + Y L AY
Sbjct: 54 -------------------LVNPALENGKTLVARTPRYLGGYMVLSEAY----------- 83
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404
+ + L++A+ + A + P ++ G+VY +
Sbjct: 84 ------------VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131
Query: 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
G+ D A +++A+A E + L LY G + A+ Y + L+ P +
Sbjct: 132 GERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190
Query: 465 R 465
Sbjct: 191 Y 191
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-40
Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 25/216 (11%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLD 112
L + ++ AL L+E L+++ + EA +G + A ++ V
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL--KLGLVNPALENGKTLVART 69
Query: 113 PQNACAHTHCGILYKD-----------EGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
P+ + Y +G L +A A +P Y A +
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHL 122
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
G L G +AL ++ L +Y + + D AL Y KA +
Sbjct: 123 QRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQA 181
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
P + +G E A L +
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAARAAA--LEHHHH 215
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 7e-18
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
Q+ LGV G+ DAA + E+A+ NP EA L G ++ A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 448 YEQCLKIDPDSRNAGQNR 465
+ + P
Sbjct: 62 GKTLVARTPRYLGGYMVL 79
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 6e-12
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKL 111
+ + A A + L +D E +MGRL A +++A++
Sbjct: 125 GLVYALLGERDKAEASLKQALALED--TPEIRSALAELYL--SMGRLDEALAQYAKALEQ 180
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
P++ +G+ EAA +
Sbjct: 181 APKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 2e-58
Identities = 72/386 (18%), Positives = 130/386 (33%), Gaps = 58/386 (15%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKL 169
L ++ + + + G S+ S ++ CL L G L
Sbjct: 3 LGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLE--LALEGERLCN 60
Query: 170 AGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----- 220
AG+ + G+ + A++ + Y LG Y L Y+ A+ ++ L
Sbjct: 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD-LTLAKSM 119
Query: 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EIAK--NNMAIALTDL 272
R A++ N+G K G + A C ER L ++ + N+
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179
Query: 273 GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL------YYNWHYADAM 326
G ++P ++ + + V +Y++ L A
Sbjct: 180 G-------------KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRAC 226
Query: 327 YNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
NLG Y + F AI ++ F A +NLG + + A E Y
Sbjct: 227 GNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286
Query: 381 QMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAY 428
+ L++ + +QS +LG YT+ + + A E + + A A
Sbjct: 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346
Query: 429 NNLGVLYRDAGSISLAIDAYEQCLKI 454
+LG + G A+ EQ L++
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-20
Identities = 53/251 (21%), Positives = 85/251 (33%), Gaps = 49/251 (19%)
Query: 51 ALSYANI---LRSRNKFVDALALYEIVLE-----KDS----------GNVEAHIGK-GIC 91
A S N+ L+ +F +A E L D GNV GK
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185
Query: 92 LQMQNMGRLAFDSFSEAV-----------KLDPQNACAHTHC--GILYKDEGRLVEAAES 138
G ++ + AV L + A G Y G A E
Sbjct: 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245
Query: 139 YHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYA 191
+ + L + AAE ++LG S G +D + Y L + A
Sbjct: 246 HQERLRIAREFGDRAAE--RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303
Query: 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNMGVIYKNRGDLESA 244
+ Y+LG Y+ L +++TA+ + + L R A A ++G + G E A
Sbjct: 304 QSCYSLGNTYTLLHEFNTAIEYHNRH-LAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362
Query: 245 IACYERCLAVS 255
+ E+ L ++
Sbjct: 363 LKYAEQHLQLA 373
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 3e-55
Identities = 69/343 (20%), Positives = 116/343 (33%), Gaps = 52/343 (15%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY 207
+A CL L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLE--LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 208 DTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-- 259
AL + ++ A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 260 --IAK--NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
A+ N+ G + + + V Y++
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR----------NALQAAVDLYEEN 169
Query: 316 L------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNL 363
L A NLG + + F A++ +E F A +NL
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229
Query: 364 GVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417
G Y + A E Y+ L + + +QS +LG YT+ + A + K
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 418 ------IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454
+ A +LG Y G+ A+ E+ L+I
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-35
Identities = 71/360 (19%), Positives = 115/360 (31%), Gaps = 86/360 (23%)
Query: 87 GKGICLQMQNMGRL---------AFDSFSEAVKLDPQN----ACAHTHCGILYKDEGRLV 133
G CL++ G F AV++ ++ + ++ G Y
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 134 EAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---- 187
+A E +H L+ + + A +LG +LK+ GN + I L I
Sbjct: 61 KALEYHHHDLTLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117
Query: 188 --PHYAPAYYNLGVVYSEL--------------------MQYDTALGCYEKA------AL 219
A A YNLG VY A+ YE+
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
+R A+ N+G + G+ A+ +E+ L ++ F K A ++LG
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLG------ 230
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAY 333
L G+ YYKK L A + Y+LG Y
Sbjct: 231 -NAYIFL----------------GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273
Query: 334 GEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387
+ ++ AI ++ AC +LG Y N D+A+ + L I
Sbjct: 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 50/229 (21%), Positives = 79/229 (34%), Gaps = 51/229 (22%)
Query: 303 GDINQGVAYYKKAL--YYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 352
GD GV++++ A+ + LG AY + + A+ ++
Sbjct: 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 406
A+A NLG K N D+A+ C Q L I K +++L NLG VY +GK
Sbjct: 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138
Query: 407 MDAAAEM--------------------------IEKAIAANPTYAEAYNNLGVLYRDAGS 440
+ A+ A+ NLG + G+
Sbjct: 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198
Query: 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
A+ A+EQ L I ++ G Y N G A+ G+
Sbjct: 199 FRDAVIAHEQRLLI---AKEFGDKAAERRAYSNLG------NAYIFLGE 238
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-53
Identities = 71/357 (19%), Positives = 120/357 (33%), Gaps = 53/357 (14%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALG 212
+ L G L +G+ + G+ + A+++ + Y LG Y L Y AL
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 213 CYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE----IAK 262
+ ++ A+A N+G K G+ + AI C +R L +S A+
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 263 --NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL---- 316
N+ G Q ++ + V +Y++ L
Sbjct: 129 ALYNLGNVYHAKGK----------SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178
Query: 317 --YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYK 368
A NLG + + F A++ +E F A +NLG Y
Sbjct: 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238
Query: 369 DRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA----- 417
+ A E Y+ L + + +QS +LG YT+ + A + K
Sbjct: 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298
Query: 418 -IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
+ A +LG Y G+ A+ E+ L+I SR G +N
Sbjct: 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI---SREVGDKSGELTARLN 352
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 4e-48
Identities = 69/396 (17%), Positives = 126/396 (31%), Gaps = 92/396 (23%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G G + A+ + L+ + + LG + + ++ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 183 ALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYC 229
L + A A NLG L +D A+ C ++ L+ + A A
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALY 131
Query: 230 NMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKNNMAIAL 269
N+G +Y +G L++A+ YE L++ + A
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAF 190
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL------YYNWHYA 323
+LG + L G+ V +++ L
Sbjct: 191 GNLG-------NTHYLL----------------GNFRDAVIAHEQRLLIAKEFGDKAAER 227
Query: 324 DAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAV 377
A NLG AY + +F+ A +Y+ A++C +LG Y + +KA+
Sbjct: 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287
Query: 378 ECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------------ 419
+ + L+I + ++ +LG YT G D A EK +
Sbjct: 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347
Query: 420 -ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454
A ++ LG+ Y SI + L
Sbjct: 348 TARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-35
Identities = 73/457 (15%), Positives = 121/457 (26%), Gaps = 136/457 (29%)
Query: 51 ALSYANI---LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL------- 100
L A L ++ +E ++ E +G
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYS--QLGNAYFYLHDY 63
Query: 101 --AFDSFSEAVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
A + + L A A + G K G EA + L
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL--------- 114
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-------- 204
L A A YNLG VY
Sbjct: 115 --------------------------DISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 148
Query: 205 ------------MQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIA 246
A+ YE+ +R A+ N+G + G+ A+
Sbjct: 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306
+E+ L ++ F K A ++LG L G+
Sbjct: 209 AHEQRLLIAKEFG-DKAAERRAYSNLG-------NAYIFL----------------GEFE 244
Query: 307 QGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNP 354
YYKK L A + Y+LG Y + ++ AI ++ +
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304
Query: 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------------PNFSQSLNNLGVVY 401
AC +LG Y N D+A+ + L I N S LG+ Y
Sbjct: 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364
Query: 402 TVQGKMDAAAEMIEKAIAAN-PTYAEAY--NNLGVLY 435
+ + + I+ ++ P + N+ ++
Sbjct: 365 STNNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMK 401
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-26
Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 51/229 (22%)
Query: 303 GDINQGVAYYKKAL--YYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELA------FHF 352
GD GV++++ A+ + LG AY + + A+ ++
Sbjct: 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 406
A+A NLG K N D+A+ C Q L I K +++L NLG VY +GK
Sbjct: 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142
Query: 407 MDAAAEM--------------------------IEKAIAANPTYAEAYNNLGVLYRDAGS 440
+ A+ A+ NLG + G+
Sbjct: 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202
Query: 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
A+ A+EQ L I ++ G Y N G+ A+ G+
Sbjct: 203 FRDAVIAHEQRLLI---AKEFGDKAAERRAYSNLGN------AYIFLGE 242
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-51
Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 33/215 (15%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D Y + G+ +++ +Y A+ E+ + ++G+ Y G ++
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306
ER LA +P+ + + + K +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQ--------------------------KYD---- 93
Query: 307 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366
V K N + + LGVA + +FD AI +++A P+ + +
Sbjct: 94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401
Y+ ++A+ ++ A + S L +V
Sbjct: 154 YEQMGRHEEALPHFKKANELDEGASV---ELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 174 bits (445), Expect = 2e-50
Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 33/215 (15%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
+ Y + G+ + G A+ E+ ++ IA G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG-------- 56
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341
+++G +++L LG+ Y ++ K+D+
Sbjct: 57 ----------------------AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL 94
Query: 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401
A+ NP LGV + D+A++ +++AL ++PN + + Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436
G+ + A +KA + + L ++ R
Sbjct: 155 EQMGRHEEALPHFKKANELDEGASVE---LALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 3e-49
Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 30/206 (14%)
Query: 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
++ + I+ G +Q V ++
Sbjct: 5 DIRQVYYRDKGISHAKAG------------------------------RYSQAVMLLEQV 34
Query: 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 375
+ D +LG+AY + D E + P + LG+ Y D
Sbjct: 35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL 94
Query: 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435
AV P LGV G+ D A + + A+ P + + + Y
Sbjct: 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154
Query: 436 RDAGSISLAIDAYEQCLKIDPDSRNA 461
G A+ +++ ++D +
Sbjct: 155 EQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 7/179 (3%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA 142
+ KGI A + D + H GI Y G + E ++
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+ P V T LG + + + + +P + LGV
Sbjct: 69 LADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
L ++D A+ ++ A RP + + + Y+ G E A+ +++ + +
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 29/260 (11%), Positives = 70/260 (26%), Gaps = 74/260 (28%)
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168
+ D + GI + GR +A +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQ--------------------------- 33
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
D +LG+ Y + D E++ + P +
Sbjct: 34 --------------VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA 79
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288
+G+ Y + A+ + +P + + +AL +LG
Sbjct: 80 TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG--------------- 124
Query: 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348
+ + + + +K AL + + +Y +M + + A+ ++
Sbjct: 125 -----------RFD----EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169
Query: 349 AFHFNPHCAEACNNLGVIYK 368
A + + L ++ +
Sbjct: 170 ANELDEGASVE---LALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-43
Identities = 29/145 (20%), Positives = 60/145 (41%)
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
+ G+++ + ++ A++ E + + + +LG+ Y +D+ E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 381 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440
+ +L+ P+ + LG+ Y K D A ++ K ANP LGV + G
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 441 ISLAIDAYEQCLKIDPDSRNAGQNR 465
AID+++ L + P+ +
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAI 150
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-32
Identities = 19/109 (17%), Positives = 40/109 (36%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
+ + G+ + +AV + +LG+ Y G +D E
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
++E+++A P + LG+ Y LA+ + + +P + N
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
K+ A+ L V E + N G+ L N+GR A DSF A+ L P
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD--NLGRFDEAIDSFKIALGLRP 141
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
H Y+ GR EA + KA D + LA+V
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 4e-07
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 418 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ + Y + G+ + AG S A+ EQ D + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL 48
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-49
Identities = 56/136 (41%), Positives = 79/136 (58%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
AL + P +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 443 LAIDAYEQCLKIDPDS 458
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 9e-39
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
AEA+ N+G Y +GD + AI Y++ L + P A N+ A G
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG----------- 49
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
D ++ + YY+KAL + A+A YNLG AY + +D AI
Sbjct: 50 -------------------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+Y+ A +P AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-35
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDE 53
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 236 KNRGDLESAIACYERCLAVSPN 257
+GD + AI Y++ L + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-33
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG-----TKTY 277
AEA+ N+G Y +GD + AI Y++ L + P A N+ A G + Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 278 GRALLL 283
+AL L
Sbjct: 127 QKALEL 132
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 91.7 bits (229), Expect = 5e-22
Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 41/162 (25%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP++
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------------------- 97
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+DP A A+YNLG Y + YD A+ Y+KA
Sbjct: 98 ----------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 80.5 bits (200), Expect = 4e-18
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------------- 33
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
AEA+ NLG Y G AI+ Y++ L++DP S A
Sbjct: 34 -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.5 bits (117), Expect = 7e-07
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
AEA+ NLG Y G AI+ Y++ L++DP S A N
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 2e-04
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP+
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 115 N 115
+
Sbjct: 136 S 136
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 4e-48
Identities = 38/249 (15%), Positives = 65/249 (26%), Gaps = 33/249 (13%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
+ L + Y Y A E A P A+ IY+ + A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQ 307
+ + L++ P+ NN L +
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCG-----------------------------RLNRPAE 95
Query: 308 GVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 365
+AY+ KAL A N G+ + +F +A + + + P A L
Sbjct: 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155
Query: 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425
L A ++ S LG + + + A E +
Sbjct: 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFP 213
Query: 426 EAYNNLGVL 434
+ VL
Sbjct: 214 YSEELQTVL 222
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 3e-47
Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 35/256 (13%)
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277
A + + + + Y D A A E L P E+A A L
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---- 56
Query: 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-YGEM 336
++ +++AL A+ N G G +
Sbjct: 57 --------------------------VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90
Query: 337 LKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394
+ ++ +++ LA P A N G+ + A + +L+ +P F +
Sbjct: 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150
Query: 395 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454
L + G++ A +K + LG ++ A ++ A AYE ++
Sbjct: 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQL 208
Query: 455 DPDSRNAGQNRLLAMN 470
+ + + + +
Sbjct: 209 QANFPYSEELQTVLTG 224
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-38
Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 10/197 (5%)
Query: 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135
EK + + R A S +A+K DP+N A +Y+ +A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALK--IDPHYAP 192
ES+ +ALS P A + + G L + + + +AL P
Sbjct: 62 QESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
A N G+ ++ Q+ A +++ +P + A+ + G L A +++
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 253 AVSPNFEIAKNNMAIAL 269
+ + + +
Sbjct: 175 SRVEVLQADDLLLGWKI 191
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 8/214 (3%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + A A E L+ D N A + + Q + A +SF +A+ + P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 115 NACAHTHCGI-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+A + + G L R E+ + KAL ADP+Y + G G
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYI----ANLNKGICSAKQGQF 129
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+L P + PA+ L Q A ++K + +G
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG- 188
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+K L +A A YE + NF ++ +
Sbjct: 189 -WKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-46
Identities = 57/359 (15%), Positives = 107/359 (29%), Gaps = 45/359 (12%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECL------AIVLTDLGTSLKLAGNTQDGIQK---- 179
GR A+ +A + + L + + + + Q+ ++K
Sbjct: 31 GRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQ 90
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNR 238
E L A A G + Y A KA P EA+ +G +Y +
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298
GD+ SA C+ L N + N+++ L L T +
Sbjct: 151 GDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHS----------------- 192
Query: 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--------KFDMAIVFYELAF 350
+ V K A+ + + Y LG AY + A+ Y A
Sbjct: 193 ----RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248
Query: 351 HFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407
+ + N ++K ++ +A+E + A ++ P + + + ++
Sbjct: 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308
Query: 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR-NAGQNR 465
+ E K L + + L++ P S G N
Sbjct: 309 TSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNS 367
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 8e-46
Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 15/235 (6%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKL 111
+ + + L E VL +A + KG L + A S+AVKL
Sbjct: 73 AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG--TSLKL 169
+P+ A G +Y +G + A + AL+ + + + L++VL L + +
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEH 191
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY--------SELMQYDTALGCYEKAA--- 218
+ + D +++ A+++D ++Y LG Y AL Y +A
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + + N ++K A+ + + A+ P + + L L
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-40
Identities = 40/355 (11%), Positives = 91/355 (25%), Gaps = 62/355 (17%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-------QYDTALG 212
+ + +QK + + +Y+ V + + L
Sbjct: 30 MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89
Query: 213 CYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTD 271
E+ + A+A G D A + + + P A N +
Sbjct: 90 QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
Query: 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 331
GD+ + AL + + ++ NL +
Sbjct: 150 K------------------------------GDVTSAHTCFSGALTHCKNK-VSLQNLSM 178
Query: 332 AYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIY--------KDRDNLD 374
++ ++ +LA + + LG Y ++
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 375 KAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
+A+ Y A + + N ++ + A E +A A +P + E
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 486
L ++ +++ K P + L + G + +
Sbjct: 299 QQLLEFLSRLTSLLESKG---KTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-39
Identities = 48/389 (12%), Positives = 97/389 (24%), Gaps = 67/389 (17%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+ L + L C+ + E +A + + ++
Sbjct: 35 MMADEEEEAKHVLQKLQGLVDRL-------YCFRDSYFETHSVEDAGRKQQDV---QEEM 84
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL 301
E + E L + A AL
Sbjct: 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTP---------------------------- 116
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ KA+ +A LG Y + A + A + +
Sbjct: 117 -DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQ 174
Query: 362 NLGVIYKD---------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY--------TVQ 404
NL ++ + ++ +V ++A+ + +S LG Y
Sbjct: 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP 234
Query: 405 GKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
A +A + + + + N L++ S A++ + Q +DP
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294
Query: 462 GQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYF 521
Q + +++ +L GK + Y S
Sbjct: 295 QQREQQLLEFLS-----RLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQ 349
Query: 522 THSVSYFIEAPLVYHDYQNYKVVVYSAVV 550
++ + L N VV VV
Sbjct: 350 KMTLELKPLSTL--QPGVNSGTVVLGKVV 376
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 9e-34
Identities = 40/279 (14%), Positives = 80/279 (28%), Gaps = 26/279 (9%)
Query: 54 YANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
L + +A L ++ + VEA G + A FS A+
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167
Query: 113 PQNACAHTHCGILYKDEGR---------LVEAAESYHKALSADPSYKPAAECLAIVLTDL 163
N + + ++ + ++++ A+ D + L L
Sbjct: 168 K-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 226
Query: 164 GTSL-KLAGNTQDGIQKYYEALKID---PHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ + +Q + Y +A K+D + N ++ Y AL + +AA
Sbjct: 227 YFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
P + E + + L S + + + L L G
Sbjct: 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGK---------TKPKKLQSMLGSLRPAHLGP 337
Query: 280 ALLLFRLNGSNFQSPFFE--LVKLEGDINQGVAYYKKAL 316
+ S + L L+ +N G K +
Sbjct: 338 CGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVV 376
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 4/184 (2%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
Y N ++ AL+ Y + K S N + H+ + + + A + FS+
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A LDP L + RL ES K L G
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK-TKPKKLQSMLGSLRPAHLGPCGDGR 342
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + Q + + P LG V L + + + P YA
Sbjct: 343 YQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVM 402
Query: 228 YCNM 231
N+
Sbjct: 403 VYNV 406
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-41
Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 49/236 (20%)
Query: 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283
+ G A++ + + +A++ +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY--------------------- 41
Query: 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343
Y+ + + L +AY + +D A
Sbjct: 42 ---------------------------YWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74
Query: 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403
+FY+ P+ + + R A+ Y+ L ++ + + LG Y +
Sbjct: 75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134
Query: 404 QGKM-DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
+ E K +++ A G+ A ++ ++ + P +
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 7e-35
Identities = 29/262 (11%), Positives = 65/262 (24%), Gaps = 55/262 (20%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
Q+ + G+ +A + + ++ +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM--------------------- 40
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
+ K + L + Y + YD A Y++ + P +
Sbjct: 41 ----YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293
+ RG + A+ YE+ L + + A +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-------------------- 136
Query: 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353
+ + K L A Y G++ +++ A +
Sbjct: 137 ---------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187
Query: 354 PHCAEACNNLGVIYKDRDNLDK 375
P EA L I + +++
Sbjct: 188 PS-TEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-33
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------CNNLGV 365
D M A E + A+ ++ N E L +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425
YK N DKA Y+ L PN L + +G+ A M EK +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 426 EAYNNLGVLYRDAG-SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
A LG Y ++ + L + A ++ + +K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR--DGLSKLFTTRYEK 175
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-30
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 23/207 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK----------------GICLQMQ 95
L + + A++ + + + E + + +
Sbjct: 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A+ + E ++ P N C + G+ +A Y K L + A
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L K ++ Y+ L A Y G+ +Y+ A +
Sbjct: 128 LGNYYYLTAEQEKKK------LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLE 242
K L P EA + I + ++
Sbjct: 182 KVILRFP-STEAQKTLDKILRIEKEVN 207
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-40
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439
AL + PN +++ NLG Y QG D A E +KA+ +P AEA NLG + G
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-35
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
A+ +P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-34
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 3e-32
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGD 304
I Y++ L + PN A N+ A G +
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQG--------------------------DYDEA 96
Query: 305 INQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336
I YY+KAL + + A+A NLG A +
Sbjct: 97 I----EYYQKALELDPNNAEAKQNLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 8e-31
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN A N+ A G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336
+ I YY+KAL + + A+A YNLG AY +
Sbjct: 58 -----------------------DYDEAI----EYYQKALELDPNNAEAWYNLGNAYYKQ 90
Query: 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
+D AI +Y+ A +P+ AEA NLG +
Sbjct: 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-30
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 30/150 (20%)
Query: 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
N A N+ A G D ++ + YY+KA
Sbjct: 6 GNSAEAWYNLGNAYYKQG------------------------------DYDEAIEYYQKA 35
Query: 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 375
L + + A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+
Sbjct: 36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95
Query: 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
A+E YQ AL + PN +++ NLG QG
Sbjct: 96 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 41/159 (25%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
+ EA G Q A + + +A++LDP NA A + G Y +G EA E Y
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
KAL +DP+ A A+YNLG
Sbjct: 68 KALE-----------------------------------------LDPNNAEAWYNLGNA 86
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 87.1 bits (217), Expect = 2e-20
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 385 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 443
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 444 AIDAYEQCLKIDPDSRNA 461
AI+ Y++ L++DP++ A
Sbjct: 62 AIEYYQKALELDPNNAEA 79
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 75.1 bits (186), Expect = 3e-16
Identities = 36/151 (23%), Positives = 51/151 (33%), Gaps = 45/151 (29%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
NA A + G Y +G EA E Y KAL
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------------------- 105
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+DP+ A A NLG +
Sbjct: 106 ------------LDPNNAEAKQNLGNAKQKQ 124
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-38
Identities = 55/333 (16%), Positives = 99/333 (29%), Gaps = 81/333 (24%)
Query: 177 IQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--ALER- 221
+ ++ P +NL + Y+ +Y+ A+ ++A LE+
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 222 -----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIA 268
P A + ++Y+++ + A LA+ P NN+A+
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--YADAM 326
G Y A L + + + +K L + H A +
Sbjct: 121 YGKRGK--YKEAEPLCK---------------------RALEIREKVLGKD-HPDVAKQL 156
Query: 327 YNLGVAYGEMLKFDMAIVFYELAF----------HFNPHCAEACNNLGVIYKDRDNLDKA 376
NL + K++ +Y+ A P+ A+ NNL Y + +A
Sbjct: 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQA 214
Query: 377 VECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------AN 421
Y+ L+ + +GK E +
Sbjct: 215 ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274
Query: 422 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454
PT NLG LYR G A E ++
Sbjct: 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-20
Identities = 41/299 (13%), Positives = 80/299 (26%), Gaps = 100/299 (33%)
Query: 123 GILYKDEGRLVEAAESYHKALSA--------DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
++Y+D+ + +AA + AL+ P+ +A L +L G +
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA-------VAATLNNLAVLYGKRGKYK 128
Query: 175 DGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALER----- 221
+ AL+I P A NL ++ +Y+ Y++ ALE
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR-ALEIYQTKL 187
Query: 222 ----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---------PNFEIAKNNMAIA 268
P A+ N+ Y +G + A Y+ L + + +
Sbjct: 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247
Query: 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYN 328
G ++ + +Y
Sbjct: 248 EECKG--KQKDGT----------------------------SFGEYGGWYK--------- 268
Query: 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387
A P NLG +Y+ + + A + A+ +
Sbjct: 269 ---ACKVD--------------S--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-34
Identities = 35/319 (10%), Positives = 84/319 (26%), Gaps = 49/319 (15%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--NLGVVYSELMQYDTALGCYEKA-- 217
+ G + + ++ K Y G+ + +Y A+G Y +A
Sbjct: 70 EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129
Query: 218 ----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ AE + + Y + ++ + L + N + +L +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189
Query: 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL------YYNWHYADAMY 327
Y ++ + + + AL + A ++
Sbjct: 190 G-NYDD----------------------FKHYDKALPHLEAALELAMDIQNDRFIAISLL 226
Query: 328 NLGVAYGEMLKFDMAIVFYELAF-----HFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
N+ +Y MA+ ++ A + L KA + +
Sbjct: 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286
Query: 383 ALSIK-----PNFSQSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLY 435
L + + L VY +++ + + + ++
Sbjct: 287 GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346
Query: 436 RDAGSISLAIDAYEQCLKI 454
+ A Y + LK
Sbjct: 347 ESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 7e-32
Identities = 45/340 (13%), Positives = 99/340 (29%), Gaps = 60/340 (17%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---------------ALER 221
+++ + ++ D Y + + ++ Y Y L
Sbjct: 38 VEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTG 97
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN----FEIAK--NNMAIALTDLGTK 275
+ + G+ ++ + AI Y P E A+ +A A +
Sbjct: 98 LLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ- 156
Query: 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
++ Q + Y+ Y+ +++ + Y +
Sbjct: 157 -THVSMYHI---------------------LQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 336 MLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-- 387
+D A+ E A + A + N+ Y + AVE +Q A +
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
Query: 388 ---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-----ANPTYAEAYNNLGVLYRDAG 439
+ L L G+ A + IE+ + ++ Y E + L +Y++
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314
Query: 440 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
D K + + R A + + H ++
Sbjct: 315 DERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQ 354
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-23
Identities = 45/303 (14%), Positives = 90/303 (29%), Gaps = 43/303 (14%)
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFE 297
+ + A E ++ I + + + L+L L
Sbjct: 25 QFSVPDAEILKAEVEQDIQQME-EDQDLLIYYSLMCFRHQ---LMLDYLEPGKTYGNRPT 80
Query: 298 LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---- 353
+ +L I L Y + G+ + ++ AI +Y A
Sbjct: 81 VTELLETIETPQKKLTGLLKYYSLF-----FRGMYEFDQKEYVEAIGYYREAEKELPFVS 135
Query: 354 --PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQ 404
AE + Y ++ AL I QSL + Y
Sbjct: 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195
Query: 405 GKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
D A +E A+ + A + N+ Y +G +A++ +++ K+ +
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255
Query: 459 RNAGQNRLL---------------AMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 503
++L A +I EG D +H+ + + F+ L + Y +
Sbjct: 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315
Query: 504 TKD 506
+
Sbjct: 316 ERK 318
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 31/357 (8%), Positives = 77/357 (21%), Gaps = 116/357 (32%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL----------- 100
+ ++V+A+ Y ++ V I K +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHF--KVAEAYYHMKQTHVSM 161
Query: 101 -----AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A D + + + Y D +A AL
Sbjct: 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL------------ 209
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
+ ++ D A + N+ Y A+ ++
Sbjct: 210 -----------------------ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
Query: 216 KA-----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
KA + + + G + A E L +
Sbjct: 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL------DHIT-------- 292
Query: 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 330
+ + + +A+Y
Sbjct: 293 -----------------------------ARSHKFYKELFLFLQAVYKET---------- 313
Query: 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387
+ K + ++E + + + + +++ + ++A Y+ L +
Sbjct: 314 ---VDERKIHDLLSYFE-KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 1e-33
Identities = 35/305 (11%), Positives = 92/305 (30%), Gaps = 50/305 (16%)
Query: 177 IQKYYEALKIDPHYAPAYYNL--GVVYSELMQYDTALGCYEKA------ALERPMYAEAY 228
+ + + Y+N G+ + +Y +A+ ++KA +R AE +
Sbjct: 87 LLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFF 146
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288
M Y ++ + + E + +
Sbjct: 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA--------------- 191
Query: 289 SNFQSPFFELVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMA 342
+NF +++++KA +YN+G+ +++ A
Sbjct: 192 TNFLD--------LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243
Query: 343 IVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFS 391
I +++ A + P +A + I+ +DKA E + ++ +
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303
Query: 392 QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
L +Y +A + ++ + ++ Y + + A +
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFL 363
Query: 450 QCLKI 454
+ ++
Sbjct: 364 KVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 43/297 (14%), Positives = 89/297 (29%), Gaps = 47/297 (15%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ G+ D+ + A + + KA S K E A + S
Sbjct: 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-KAEFFFKMSESYYYMK 157
Query: 172 NTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
T + +A +I + + + +L QY+ A+ ++KA
Sbjct: 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278
+ + N+G+ ++ E AI ++R +AV ++ A +
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAYFLIT----- 271
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL-----YYNWHYADAMYNLGVAY 333
+ ++L G I++ Y+ K + + Y L Y
Sbjct: 272 --QIHYKL----------------GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313
Query: 334 ---GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387
+ F E + ++ Y +R N KA + ++
Sbjct: 314 LSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 6e-27
Identities = 29/209 (13%), Positives = 75/209 (35%), Gaps = 28/209 (13%)
Query: 303 GDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH----- 351
+ + ++KKA A+ + + +Y M + ++ + A+
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176
Query: 352 --FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 403
+N + + + D + A+ +Q A S+ ++L N+G+
Sbjct: 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236
Query: 404 QGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
Q + + A ++AIA P+ +AY + ++ G I A + + + +
Sbjct: 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296
Query: 458 SRN---AGQNRLLAMNYINEGHDDKLFEA 483
+ + + L Y++ ++ +
Sbjct: 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 31/258 (12%), Positives = 66/258 (25%), Gaps = 29/258 (11%)
Query: 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFE 297
R + A E ++ L + L
Sbjct: 25 RFSIPDAEYLRREIKQELDQME--EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR 82
Query: 298 LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----- 352
L L +I++ A L Y +++ G+ + ++ AI F++ A
Sbjct: 83 LSDLLLEIDKKQARLTGLLEYYFNF-----FRGMYELDQREYLSAIKFFKKAESKLIFVK 137
Query: 353 -NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQ 404
AE + Y +++ + A I Q + +
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197
Query: 405 GKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
+ + A +KA + N+G+ AI +++ + +
Sbjct: 198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV---F 254
Query: 459 RNAGQNRLLAMNYINEGH 476
+ L Y
Sbjct: 255 EESNILPSLPQAYFLITQ 272
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 17/142 (11%)
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIK----PNFSQSLNNL--GVVYTVQGKMDAAAEMI 414
L + K R + + + K + N G+ Q + +A +
Sbjct: 67 EYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126
Query: 415 EKA------IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-----DPDSRNAGQ 463
+KA + AE + + Y ++D Q +I + R
Sbjct: 127 KKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186
Query: 464 NRLLAMNYINEGHDDKLFEAHR 485
+ L A N+++ + +
Sbjct: 187 HSLFATNFLDLKQYEDAISHFQ 208
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 50/305 (16%), Positives = 91/305 (29%), Gaps = 69/305 (22%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKA--ALER------PMYAEAYCNMGVIYKNRGDLESA 244
+ ++ S L+ +A+ ++A LE+ P A + ++Y+++ + A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 245 IACYERCLAVS--------PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFF 296
LA+ P NN+A+ G Y A L +
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--YKEAEPLCK----------- 109
Query: 297 ELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF---- 350
+ + +K L H A + NL + K + +Y A
Sbjct: 110 ----------RALEIREKVLGKF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158
Query: 351 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQSLN 395
P+ A+ NNL Y + A Y+ L+ +
Sbjct: 159 TRLGPDD--PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWM 216
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
+ + K +A E +PT +LG LYR G + A +
Sbjct: 217 HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276
Query: 450 QCLKI 454
+
Sbjct: 277 CASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-32
Identities = 52/305 (17%), Positives = 89/305 (29%), Gaps = 73/305 (23%)
Query: 163 LGTSLKLA------GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 208
+G+S + +AL+ P A L +VY + +Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 209 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 255
A A L P A N+ V+Y RG + A +R L +
Sbjct: 61 EAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119
Query: 256 ----PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAY 311
P+ NN+A+ + G +R + +
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYR---------------------RALEI 156
Query: 312 YKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEAC 360
Y L + A NL Y + K+ A Y+ N
Sbjct: 157 YATRLGPD-DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMI 414
+ + +D + + K P + +L +LG +Y QGK++AA +
Sbjct: 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275
Query: 415 EKAIA 419
+ A
Sbjct: 276 DCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 30/154 (19%)
Query: 123 GILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+L +++G+ E Y +AL DP+ +A +L + G Q
Sbjct: 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-------VAKTKNNLASCYLKQGKYQ 186
Query: 175 DGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---- 221
D Y E L + P + + + + E + +
Sbjct: 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246
Query: 222 --PMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
P ++G +Y+ +G LE+A +
Sbjct: 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-29
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 417 AIAANPTYAEAYNNLGVLYRDAG 439
A+ +P AEA NLG + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 3e-28
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 186 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-26
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 382 MALSIKPNFSQSLNNLGVVYTVQG 405
AL + PN +++ NLG QG
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 87.8 bits (219), Expect = 3e-21
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 223 MYAEAYCNMGVIYKNRG 239
AEA N+G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 5e-21
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 385 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 443
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 444 AIDAYEQCLKIDPDSRNAGQNR 465
AI+ Y++ L++DP++ A QN
Sbjct: 62 AIEYYQKALELDPNNAEAKQNL 83
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 85.9 bits (214), Expect = 2e-20
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
A++ AEA+ N+G Y +GD + AI Y++ L + PN A N+ A G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
+ I YY+KAL + + A+A NLG A +
Sbjct: 58 -----------------------DYDEAI----EYYQKALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 2e-16
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 30/114 (26%)
Query: 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
N A N+ A G + + + YY+KA
Sbjct: 6 GNSAEAWYNLGNAYYKQG--------------------------DYD----EAIEYYQKA 35
Query: 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
L + + A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG +
Sbjct: 36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 2e-12
Identities = 29/125 (23%), Positives = 39/125 (31%), Gaps = 45/125 (36%)
Query: 82 VEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139
EA G G A + + +A++LDP NA A + G Y +G EA E Y
Sbjct: 9 AEAWYNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199
KAL +DP+ A A NLG
Sbjct: 67 QKALE-----------------------------------------LDPNNAEAKQNLGN 85
Query: 200 VYSEL 204
+
Sbjct: 86 AKQKQ 90
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 3e-06
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDP 113
N + + +A+ Y+ LE D N EA G G A + + +A++LDP
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDP 74
Query: 114 QNACAHTHCGILYKDEG 130
NA A + G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A +++N GV + + A+ + + C N+G +Y N+ +A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----------------YAE 426
+++ + + + G++Y K D A + +++A+ E
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122
Query: 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482
N+ +Y A + + + R++ ++ AM + + +
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK--AMECVWKQKLYEPVV 176
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 64/222 (28%)
Query: 171 GNTQDGIQKYYEAL----KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G + + AL + ++ +N+G +Y+ L A + ++ A
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286
AY G++Y + AI + L
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG----------------------------- 103
Query: 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346
NQ + Y L + + +YN+ Y + ++ A
Sbjct: 104 -------------------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144
Query: 347 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388
LA +DKA+EC +P
Sbjct: 145 ALATSMKSE------------PRHSKIDKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 5e-23
Identities = 24/174 (13%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA 170
+ A + + G+L D+ A +++ + + + ++G +
Sbjct: 1 MSLVEAISLWNEGVLAADKKDWKGALDAFSAV---QDPH-------SRICFNIGCMYTIL 50
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---------- 220
N + + + ++ D H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110
Query: 221 ------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ E N+ +Y + + + A ++ +K + A+
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 1e-22
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
A + N GV+ D+ + A++ + +++ S+ N+G +YT+ M A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
+I + A AY G+LY LAI ++ L ++ ++Y G
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ--------LIDYKILGL 114
Query: 477 DDKLFEAH 484
KLF
Sbjct: 115 QFKLFACE 122
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 376
A NLG + + F A++ +E F A +NLG Y + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 377 VECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTY 424
E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454
A +LG Y G+ A+ E+ L+I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-22
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 36/180 (20%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
R A+ N+G + G+ A+ +E+ L ++ F K IA ++LG Y
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGN-AYIF 61
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAY 333
G+ YYKK L A + Y+LG Y
Sbjct: 62 ----------------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 99
Query: 334 GEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387
+ ++ AI ++ AC +LG Y N D+A+ + L I
Sbjct: 100 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-19
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 15/153 (9%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A + G + G +A ++ + L + I ++LG + G +
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFET 67
Query: 176 GIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RP 222
+ Y + L + A + Y+LG Y+ L Y+ A+ + K L R
Sbjct: 68 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK-HLAIAQELKDRI 126
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
A ++G Y G+ + A+ E+ L +S
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-27
Identities = 18/104 (17%), Positives = 38/104 (36%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+ G++ ++ A + +E P EA +LG+ + + A+
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
A + P L V +T + +AA + + + P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 3e-23
Identities = 18/97 (18%), Positives = 37/97 (38%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
G S+ N + + + +P A+ +LG+ +E + A+ A + P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
+ + V + N + +A+A L P +E
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-22
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 353 NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411
NP+ E G+ NL +A ++ +P ++ +LG+ K A
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 412 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
+ A +P + L V + + + + A+ + L P
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 1e-21
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
G+ + AA E P EA+ +LG+ + LAI A +D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 456 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 487
P LA+++ NE + + + R W
Sbjct: 82 PKDIAVHAA--LAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-19
Identities = 16/91 (17%), Positives = 34/91 (37%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
++ + ++ +A +LG+ E K +AI+ A +P
Sbjct: 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 392
L V + + N + A+ + L +P + Q
Sbjct: 90 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 7e-19
Identities = 13/83 (15%), Positives = 26/83 (31%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
G+ +L A +E + P EA+ ++G+ AI
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 251 CLAVSPNFEIAKNNMAIALTDLG 273
+ P +A++ T+
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEH 99
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-18
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G+ L EAA ++ +P + A LG + I
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEA-------WRSLGLTQAENEKDGLAIIALNH 76
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
A +DP + L V ++ + AL L +P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 4e-18
Identities = 20/104 (19%), Positives = 38/104 (36%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
++ + + +A +E V +K+ EA G+ LA + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
A LDP++ H + + +E A S L + P Y+
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 8e-15
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140
E + +G+ + A +F + +P+ A G+ + + A + +
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191
A DP L S N + L P Y
Sbjct: 76 HARMLDPKDIAV-------HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 15/132 (11%), Positives = 28/132 (21%), Gaps = 30/132 (22%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282
MY E G+ +L A +E P E A ++ + +
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN---------- 64
Query: 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342
+ A + L V++ + A
Sbjct: 65 --------------------EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104
Query: 343 IVFYELAFHFNP 354
+ P
Sbjct: 105 LASLRAWLLSQP 116
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
E GV+ D N ++++ ++ A+ + P S+ G + + A +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 413 MIEKAIA--ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
I + + + R + + E K++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 1e-24
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ YY GV+ + Y ++ +EKA P ++ + G N E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 246 ACYERCLAVSPNFEIAK--NNMAIALTDLG 273
CY + V + A AL +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIE 90
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 5e-23
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 221
G AGN + I + +A+++DP + + G L +Y+ A+ CY +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + E E + +
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 7e-23
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
+ Y GV + + +I +E A +P ++ G + + ++AV+CY
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 381 QMALSIKPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425
+++ + + AE+ E +
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 5e-18
Identities = 8/90 (8%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEAC 360
G+ + + ++KA+ + + G A + +++ A+ Y + + + +
Sbjct: 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNF 390
+ + + E + ++ +
Sbjct: 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 3e-17
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 43/139 (30%)
Query: 81 NVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
N E + +G+ + G + D F +A++LDP+ + G + R EA +
Sbjct: 5 NPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
Y+ ++ + D + +
Sbjct: 63 YNYVIN---------------------------------------VIEDEYNKDVWAAKA 83
Query: 199 VVYSELMQYDTALGCYEKA 217
+ + E
Sbjct: 84 DALRYIEGKEVEAEIAEAR 102
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 6e-16
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445
+ + GV+ G + ++ EKAI +P ++ + G + A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 446 DAYEQCLKIDPDSRNA 461
D Y + + D N
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 4e-14
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKL- 111
+ + +++ L+E ++ D + + KG L N+ R A D ++ + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEEAVDCYNYVINVI 70
Query: 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
D N + AE + +
Sbjct: 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
E Y GVL DAG+ + +ID +E+ +++DP+ +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 3e-05
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 55 ANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
L + ++ +A+ Y I + +D N + K L+ + + KL+
Sbjct: 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Query: 113 PQNA 116
+
Sbjct: 107 HHHH 110
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 67/242 (27%)
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNM 231
+ L + A + LG VY+ + ++D A ++ + A +
Sbjct: 14 QAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQV 72
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291
G++ + G+ ++A C+ + + + ++ +
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA-------TVALHF----- 120
Query: 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY-NLGVAYGEMLKFDMAIVFYELAF 350
GD+ Y+K+L
Sbjct: 121 -----------GDLAGARQEYEKSL--------VYAQQADDQVAI--------------- 146
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQ 404
A A LG + + NL +A + + A I ++ + L +
Sbjct: 147 ------ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHH 200
Query: 405 GK 406
Sbjct: 201 HH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 376
+ A + LG Y M +FD A ++ + A + +G++ + N D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 377 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPT 423
C+ + S + + V G + A + EK++
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Query: 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
A A+ LG L + ++ A + + I + +
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVNELMTR 192
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 22/146 (15%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 410
+ A LG +Y D D+A +Q ++L+ +G+V + G DAA
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 411 AEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
+ + + + G ++ A YE+ L ++ A
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142
Query: 464 NRLLAMNYINEGHDDKLFEAHRDWGK 489
+A + G + +
Sbjct: 143 QVAIACAFRGLG------DLAQQEKN 162
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 6e-21
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 27/187 (14%)
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS-----ADPSYKPAAECLAIVL 160
+ + A G +Y R EA S+ D + L
Sbjct: 16 QALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA------EHRAL 69
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGC 213
+G ++AGN + + E ++ + Y + V A
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE 129
Query: 214 YEKAALE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
YEK +L + A A+ +G + + +L A + R + E +
Sbjct: 130 YEK-SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE-DSEAVN 187
Query: 267 IALTDLG 273
+T L
Sbjct: 188 ELMTRLN 194
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 44/200 (22%)
Query: 55 ANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
+ ++F +A A ++ + + + SG+ H + L +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRAL--HQV--------------- 72
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
G++ + G A + + S + ++ T G+
Sbjct: 73 ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122
Query: 173 TQDGIQKYYEALKI-----DPHY-APAYYNLGVVYSELMQYDTALGCYEKA------ALE 220
Q+Y ++L D A A+ LG + + A + +A +
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
Query: 221 RPMYAEAYCNMGVIYKNRGD 240
E + + +
Sbjct: 183 SEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 375 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 422
+A + S + LG VY + D A + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL-LAMNYINEGHDDKLF 481
A + +G++ R AG+ A + + ++ + ++ L + N
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEEREL---LASLPEDPLAASANAYEVA------ 114
Query: 482 EAHRDWGK 489
+G
Sbjct: 115 TVALHFGD 122
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 33/294 (11%), Positives = 74/294 (25%), Gaps = 41/294 (13%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
+ + Y + + E A + ++ + + L L K +
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ-KDLHEEM 152
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341
Y + ++ V +
Sbjct: 153 ----------------------------NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184
Query: 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV- 400
+ F + + A + + ++ D ++ L + N V
Sbjct: 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
Query: 401 -----YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
Y + ++ + + I P A+N L + +D G +S + Q L +
Sbjct: 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQ 303
Query: 456 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 509
P + L Y + + + D + + L KD R
Sbjct: 304 PSHSSPYLIAFLVDIYEDMLENQC--DNKEDILNKALEL---CEILAKEKDTIR 352
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 94.4 bits (234), Expect = 1e-20
Identities = 31/286 (10%), Positives = 73/286 (25%), Gaps = 42/286 (14%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 149 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287
+ + + + ++ + ++ L N R ++
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ--------------RYFVISNTT 248
Query: 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347
G N + + V Y + + H A L +
Sbjct: 249 GYN----------DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLN 297
Query: 348 LAFHFNP--HCAEACNNLGVIYKDR---------DNLDKAVECYQM 382
P L IY+D D L+KA+E ++
Sbjct: 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 4e-20
Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 1/187 (0%)
Query: 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 373
+ Y+ + D + + A A N + V+ K + +L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433
+ + + +P Q ++ V+ E I + + A+ +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 493
+ ++ + +Q LK D + + R ++ +D + E + ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 494 LYSQYTS 500
L S
Sbjct: 269 LVPHNES 275
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 8e-17
Identities = 19/192 (9%), Positives = 58/192 (30%), Gaps = 6/192 (3%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+ + ++E+ N + + + ++ + ++ + D +N A H +
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
++ + + L D V+++ + +Q E +K
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIK 268
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI----YKNRGDL 241
+ PH A+ L + + + +P ++ Y ++
Sbjct: 269 LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327
Query: 242 ESAIACYERCLA 253
++ + L
Sbjct: 328 DNKEDILNKALE 339
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 3e-24
Identities = 37/292 (12%), Positives = 77/292 (26%), Gaps = 40/292 (13%)
Query: 171 GNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ Q I + P L Y +Y L + ++ +A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP---ELQAVR 69
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289
+ ++ +A +R ++ S + + A + AL
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL-------- 121
Query: 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 349
+ + M ++ + D+A +
Sbjct: 122 -------------------------RTLHQGDSLECMAMTVQILLKLDRLDLARKELKKM 156
Query: 350 FHFNPHCAEACNNLGVI--YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407
+ + + L A +Q LN + QG+
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDS 458
+AA ++++A+ + + E NL VL + G + Y LK
Sbjct: 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 4e-19
Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 12/202 (5%)
Query: 54 YANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+A L S ++ +A + + + D N + A + + L
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+ + RL A + K D A V G
Sbjct: 131 ECMAMTVQ-----ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG-----GE 180
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
QD + E + +++ A G ++A + + E N+
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 232 GVIYKNRGDLESAIACYERCLA 253
V+ ++ G Y L
Sbjct: 241 VVLSQHLGKPPEVTNRYLSQLK 262
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 5e-18
Identities = 30/264 (11%), Positives = 68/264 (25%), Gaps = 17/264 (6%)
Query: 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV--KLDPQ 114
+ R+ + + + + ++A L + + +D
Sbjct: 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT 99
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N +Y + A + H+ S + L +
Sbjct: 100 NTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKL------------DRLD 147
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVV--YSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
++ + D V + + A +++ A +
Sbjct: 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292
+ +G E+A + L N+ + LG L +L ++
Sbjct: 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
Query: 293 SPFF-ELVKLEGDINQGVAYYKKA 315
PF E E D ++ V Y +
Sbjct: 268 HPFIKEYRAKENDFDRLVLQYAPS 291
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 2e-15
Identities = 33/255 (12%), Positives = 69/255 (27%), Gaps = 15/255 (5%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298
G + I +R SP ++ ++ + L + YG L + + +
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVF-LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMF 71
Query: 299 VKL---EGDINQGVAYYKKALYYNWHYADAMYNL--GVAYGEMLKFDMAIVFYELAFHFN 353
+ + VA + + + + + L Y D A+
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-----Q 126
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAA 411
E I D LD A + + + + + V G K+ A
Sbjct: 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186
Query: 412 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471
+ ++ N + G A ++ L D N L +
Sbjct: 187 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN--LVVLS 244
Query: 472 INEGHDDKLFEAHRD 486
+ G ++ +
Sbjct: 245 QHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 7e-11
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK 110
A ++ ++ K DA +++ + +K S + G+ C Q A EA+
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
Query: 111 LDPQNACAHTHCGILYKDEGRLVEAAESY-HKALSADPSY 149
D + + +L + G+ E Y + A S+
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 3e-24
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 365
+ G + + +Y LG + K+D A ++ + + A LG
Sbjct: 2 SDG-GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60
Query: 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---ANP 422
+ ++A++ Y + N + + + G +D A A A A P
Sbjct: 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 423 TYAEAYNNLGVL 434
+ G +
Sbjct: 121 AHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-23
Identities = 13/127 (10%), Positives = 29/127 (22%)
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
+ + E LG D A + +Q + ++ LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ A + + + + G + A + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 466 LLAMNYI 472
A +
Sbjct: 127 ARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 2e-23
Identities = 24/141 (17%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+ L LG + AG D + + +D + A + L
Sbjct: 6 TLAMLRGLSEDT-------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL 58
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
G L Y+ AL Y AL + + GDL+ A + + A++
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 258 ---FEIAKNNMAIALTDLGTK 275
E L + +
Sbjct: 119 QPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 8e-17
Identities = 10/90 (11%), Positives = 27/90 (30%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362
G + ++ + + A LG + ++ A+ Y + + +
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQ 392
+ +LD A + A ++
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-16
Identities = 17/101 (16%), Positives = 32/101 (31%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
K+ DA +++ + D + +G G C Q + A S+S +D
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
H + G L A ++ A + +
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 10/142 (7%)
Query: 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128
++ +E G A F LD +A G +
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-- 186
G +A +SY D + G+ +Y A +
Sbjct: 65 LGLYEQALQSYSYGALMDINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 187 -DPHYAPAYYNLGVVYSELMQY 207
P + G + +
Sbjct: 118 AQPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 12/147 (8%), Positives = 27/147 (18%), Gaps = 30/147 (20%)
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
G E +G G + A ++ + +
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 331
L G Q + Y + + ++
Sbjct: 65 L------------------------------GLYEQALQSYSYGALMDINEPRFPFHAAE 94
Query: 332 AYGEMLKFDMAIVFYELAFHFNPHCAE 358
+ ++ D A + A
Sbjct: 95 CHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 15/96 (15%), Positives = 21/96 (21%), Gaps = 11/96 (11%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L +S + AL Y D C A F A L
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
L A + +A++A
Sbjct: 116 AAAQP-----------AHEALAARAGAMLEAVTARK 140
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 6e-24
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
Q ++ L + LG Y+E Q+D AL A P Y+ A+ +G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 234 IYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLG 273
+ +GD A +E LA + + + + + L L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-23
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 432
+ E + L+ + LG Y + DAA + A+ +PTY+ A+ LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 433 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
+ G + A A+E L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401
E LG Y + + D A+ + AL P +S + LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 402 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 450
QG A + E +AA + + L V R A++ +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 309 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 368
+ L + LG Y E +FD A+ A F+P + A LG +
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 369 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAA 410
+ + A + ++ L+ + Q + L V + DA
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 9/117 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
E L+ ++ LG + + AL DP Y+ A
Sbjct: 3 AITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACY 248
+ LG A +E + + V + ++ +
Sbjct: 56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
E +L + + N+ G A A+ DP + A G
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 126 YKDEGRLVEAAESYHKALSADPSY--KPAAECLAIVLTDLG 164
+ +G A +++ L+A S + + L + L L
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 466
M A E +E +A LG Y + A+ L DP A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-- 58
Query: 467 LAMNYINEGHDDK 479
L +G
Sbjct: 59 LGKTLQGQGDRAG 71
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 32/143 (22%)
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300
+++ E LA + + + + +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHE--------------------------- 33
Query: 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AE 358
+ + + + AL ++ Y+ A LG A +E +
Sbjct: 34 ---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQ 90
Query: 359 ACNNLGVIYKDRDNLDKAVECYQ 381
L V + D +
Sbjct: 91 VVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 50 DALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDS 104
+ L +F AL L+ D A G LQ Q G A +
Sbjct: 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ--GDRAGARQA 75
Query: 105 FSEAVKLDPQNACAHTH--CGILYKDEGRLVEAAESYH 140
+ + + + R +A E +H
Sbjct: 76 WESGLAAAQSRGDQQVVKELQVFLRRLARE-DALEHHH 112
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-23
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
A A +LG + + +KA Y A+ + P+ NN VY + K +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 413 MIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
EKA+ A+A + G ++ +SLA+ + + L D
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-21
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
A A +LG + ++ A Y+KA P Y N +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 247 CYERCLAVSPNFE-----IAK--NNMAIALTDLG-----TKTYGRALLLFRLN 287
E+ + V IAK + A + + R+L FR
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 8e-15
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 25/146 (17%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
A A ++G + D E A Y++ + + P+ NN A + +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK--KFAE 60
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
+ + V ++ A AM G A+ +
Sbjct: 61 CV---------------------QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDL 99
Query: 340 DMAIVFYE--LAFHFNPHCAEACNNL 363
+A+ ++ L+ +P + L
Sbjct: 100 SLAVQWFHRSLSEFRDPELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----- 356
+ D + +Y KA+ + N Y E KF + F E A
Sbjct: 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80
Query: 357 --AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
A+A + G ++ +++L AV+ + +LS +
Sbjct: 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-13
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444
+ + + + +LG Q + A +KAI +P+ YNN +Y + +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 445 IDAYEQCLKIDPDSRNAGQNRLLAMN 470
+ E+ +++ ++R + AM+
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMS 87
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-09
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 34/122 (27%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A++LDP N + + +Y +E + E + KA+
Sbjct: 27 AHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR------------- 73
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
E A A G + + A+ + ++ E
Sbjct: 74 ---------------------ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
Query: 221 RP 222
Sbjct: 113 FR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + F A Y+ +E D N+ + K + +AV++ +
Sbjct: 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75
Query: 116 -------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
A A + G ++ + L A + +H++LS + +
Sbjct: 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 1e-22
Identities = 49/289 (16%), Positives = 80/289 (27%), Gaps = 70/289 (24%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
A Y V +KN LE A Y + N + A A G
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAG----------- 83
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
++K + + V Y +KA Y E D A
Sbjct: 84 ------------MMLKDLQRMPEAVQYIEKASVM--------------YVENGTPDTA-- 115
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLG 398
A A + G + + D L KAV YQ A ++ ++ +
Sbjct: 116 ------------AMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162
Query: 399 VVYTVQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452
+ Q K D AA ++K + PT + ++ A +
Sbjct: 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222
Query: 453 KID--PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYT 499
I S + L +E +++L R + + Y
Sbjct: 223 SIPGFSGSEDCAALEDLL-QAYDEQDEEQLLRVCRS--PLVTYMDNDYA 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 49/317 (15%), Positives = 82/317 (25%), Gaps = 94/317 (29%)
Query: 130 GRLVEAAESYHKA--------LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181
++ EA E KA + P Y AA + K A + Y
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEY----AKAAVAFKNAKQLEQAKDAYL 60
Query: 182 EALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYAEAYCN 230
+ + H A A+ G++ +L + A+ EKA+ P A +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290
DL A+ Y++
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAA-------------------------------------- 142
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA- 349
+ + E + Q K KFD A +
Sbjct: 143 ------AVFENEERLRQAAELIGK--------------ASRLLVRQQKFDEAAASLQKEK 182
Query: 350 -----FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGV 399
P C + C ++ R + A +C + + SI P FS S L +L
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQ 241
Query: 400 VYTVQGKMDAAAEMIEK 416
Y + + +
Sbjct: 242 AYD-EQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 16/178 (8%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+ +K+ +L +A ++Y + A + + A G LK + +Q +
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA-AKAFEQAGMMLKDLQRMPEAVQYIEK 101
Query: 183 ALKI-----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-----LERPMYA-EAYCNM 231
A + P A + E + A+ Y++AA ER A E
Sbjct: 102 ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFE----IAKNNMAIALTDLGTKTYGRALLLFR 285
+ + + A A ++ ++ E K +A L L Y A R
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-22
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
+P L + DN +A+ ++ + P++ + +LG +Y + D A +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 413 MIEKAIAANPTYAEAY--NNLGVLYRDAGSI 441
+ I + L A +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-21
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
DP Y L + + AL +E+ P Y Y ++G +Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 247 CYERCLAVSPNFEIAK--NNMAIALTDLG 273
Y + + V+ K + + A
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-19
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447
P + L + A + E+ + +P Y Y +LG LY AID
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 448 YEQCLKIDPDSRNA 461
Y Q +++ +
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 6e-19
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
Y L + + A+ +E +P +LG +Y+ D D A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 382 MALSIKPNFS--QSLNNLGVVYTVQGKMD 408
+ + + L+ L ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLE 94
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-17
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
L N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 223 MYAEAY--CNMGVIYKNRGDLESAIACY 248
+ LE +
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 10/130 (7%), Positives = 29/130 (22%), Gaps = 32/130 (24%)
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278
+E P + + + A+A +E + P++ ++ L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL------ 54
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADA--MYNLGVAYGEM 336
+ + Y + + + L A +
Sbjct: 55 ------------------------DRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKA 90
Query: 337 LKFDMAIVFY 346
+ +
Sbjct: 91 EGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 14/73 (19%), Positives = 25/73 (34%)
Query: 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
+D + + A F E V+ DP + H G LY+ R +A
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 137 ESYHKALSADPSY 149
++Y + +
Sbjct: 62 DTYAQGIEVAREE 74
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 8e-09
Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 32/124 (25%)
Query: 255 SPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK 314
P + +A + ++ +A +++
Sbjct: 3 DPEDPFTRYALAQEHLKHD------------------------------NASRALALFEE 32
Query: 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA--CNNLGVIYKDRDN 372
+ + Y Y+LG Y + + D AI Y + L +
Sbjct: 33 LVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEG 92
Query: 373 LDKA 376
L+
Sbjct: 93 LEHH 96
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
+P L + + S A+ +E+ ++ DPD + L Y D
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH--LGKLYERLDRTDD 59
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+D + A + ALAL+E ++E D V + G + + A D++
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
Query: 106 SEAVKLDPQNACAHTHC--GILYKDEGRLVEAAESY 139
++ +++ + L +
Sbjct: 65 AQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 2e-21
Identities = 16/148 (10%), Positives = 41/148 (27%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362
G + G + + +Y+L + ++ A ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422
LG + D A+ Y + + + G++ A + A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
E + +I L + +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 3e-21
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 7/145 (4%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G L + L L + +G +D + +D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249
+ + LG + QYD A+ Y A+ + G+L A +
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 250 RCLAVSPNFEIAKNNMAIALTDLGT 274
+ N + L
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 4e-20
Identities = 13/142 (9%), Positives = 31/142 (21%)
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
+ + E +L + A +Q + S+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
G G+ D A + + G ++ A ++ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 458 SRNAGQNRLLAMNYINEGHDDK 479
+ + + K
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 3e-14
Identities = 20/96 (20%), Positives = 30/96 (31%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
S A + DA +++ + D + +G G C Q LA S+S +D
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
H G L EA A +
Sbjct: 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 1e-12
Identities = 16/127 (12%), Positives = 28/127 (22%), Gaps = 7/127 (5%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
++ E S +E A F LD ++
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + G+ A SY D L G + +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRF-------PFHAAECLLQXGELAEAESGLFL 114
Query: 183 ALKIDPH 189
A ++ +
Sbjct: 115 AQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
G + + I + E +L +G A ++ +D
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 3e-21
Identities = 84/420 (20%), Positives = 145/420 (34%), Gaps = 79/420 (18%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQM-----QNMGRLAFDSFSEAVKLDPQNACAHT 120
+ L ++ + +SG +A + G +++ + A D F A + A
Sbjct: 23 GNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQ-AMDWFRRAAEQG--YTPAEY 79
Query: 121 HCGILYKDEGRLV-----EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
G+ Y G V +A Y KA A A + L V+ G +K
Sbjct: 80 VLGLRY-MNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLG-VMYHEGNGVK------- 128
Query: 176 GIQKYYEALK-----IDPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAE 226
E++K + ++G Y E + + Y A Y KAA +
Sbjct: 129 --VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--NVW 184
Query: 227 AYCNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIA-LTDLGTKT-YGRA 280
+ +G +Y G + + Y + + + E+ + ++A +G Y ++
Sbjct: 185 SCNQLGYMYSRGLGVERNDAISAQWYRK--SATSGDELGQLHLADMYYFGIGVTQDYTQS 242
Query: 281 LLLFRL---NGSNFQSPFFELVKL-------EGDINQGVAYYKKALYYNWHYADAMYNLG 330
+LF G N + F L + + + + +Y+K+ +D Y L
Sbjct: 243 RVLFSQSAEQG-NSIA-QFRLGYILEQGLAGAKEPLKALEWYRKS--AEQGNSDGQYYLA 298
Query: 331 VAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQM 382
Y + + + AI +Y + A A NLG IY KAVE ++
Sbjct: 299 HLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437
A + NLG QGK AA + KA + A LG +Y
Sbjct: 357 A--AAKGEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-18
Identities = 69/366 (18%), Positives = 111/366 (30%), Gaps = 76/366 (20%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIV 159
+ + + A A G Y +G + +A+ ++ AAE
Sbjct: 26 NLEQLKQKAESG--EAKAQLELGYRY-FQGNETT--KDLTQAMD---WFRRAAEQGYTPA 77
Query: 160 LTDLGTSLKL-AGNTQDGIQ--KYYE--ALKIDPHYAPAYYNLGVVYSE----LMQYDTA 210
LG G QD Q +Y+ ALK A NLGV+Y E + +
Sbjct: 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---GLPQAQQNLGVMYHEGNGVKVDKAES 134
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMA 266
+ + AA + +MG Y G D A Y + A+
Sbjct: 135 VKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA---------AEQGNV 183
Query: 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAM 326
+ LG + R G +E + +Y+K+
Sbjct: 184 WSCNQLG-------YMYSRGLG------------VERNDAISAQWYRKS--ATSGDELGQ 222
Query: 327 YNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVE 378
+L Y G + D + V + + + A LG I + KA+E
Sbjct: 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALE 280
Query: 379 CYQMALSIKPNFSQSLNNLGVVYT-----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433
Y+ + + S L +Y V + A K+ A A NLG
Sbjct: 281 WYRKS--AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGA 336
Query: 434 LYRDAG 439
+Y G
Sbjct: 337 IYFRLG 342
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 58/349 (16%), Positives = 109/349 (31%), Gaps = 78/349 (22%)
Query: 115 NACAHTHCGILYKDEGRLV-----EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
N + G +Y G V +A+ Y K+ A + LA + G
Sbjct: 182 NVWSCNQLGYMY-SRGLGVERNDAISAQWYRKS--ATSGDELGQLHLA-DMYYFGI---- 233
Query: 170 AGNTQDGIQKYYEALK-----IDPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALE 220
G TQD Y ++ + + A + LG + + + AL Y K+A +
Sbjct: 234 -GVTQD----YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288
Query: 221 RPMYAEAYCNMGVIYKN--RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
++ + +Y G + E AI+ Y + + A+ N+ LG++
Sbjct: 289 G--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK--SAEQGDATAQANLGAIYFRLGSE 344
Query: 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY-- 333
+ + V +++KA A +NLG A
Sbjct: 345 E---------------------------EHKKAVEWFRKA--AAKGEKAAQFNLGNALLQ 375
Query: 334 GEMLKFDM--AIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIK 387
G+ +K D A ++ A + A LG IY + +A + A
Sbjct: 376 GKGVKKDEQQAAIWMRKA--AEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA--ST 431
Query: 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI-AANPTYAEAYNNLGVLY 435
+ + + + + + EA+ + L
Sbjct: 432 NDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAPEAWARMQKLK 480
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 20/155 (12%)
Query: 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM--AIVFYELAF 350
F LV L N + K+ A A LG Y G D+ A+ ++ A
Sbjct: 13 LFALVSLPALGNVNLEQLKQKAESG--EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA 70
Query: 351 HFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYT---- 402
A LG+ Y + + + +AV Y+ A Q+ NLGV+Y
Sbjct: 71 EQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--ALKGLPQAQQNLGVMYHEGNG 126
Query: 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437
V+ + + A ++G Y +
Sbjct: 127 VKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFE 159
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 3e-21
Identities = 30/122 (24%), Positives = 52/122 (42%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412
+ AE G +N + AV Y A+ + P + N Y+ G A +
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 413 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 472
E+AI +P Y++AY +G+ A+ Y++ L++DPD+ N +A +
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Query: 473 NE 474
E
Sbjct: 128 RE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 5e-21
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
N + + Y +A++++P A + N YS+L Y A+ E+A P Y++AY
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-18
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
A+ + G ++ F+ A+ FY A NP A N Y N AV+ +
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436
A+ I P +S++ +G+ + K A +KA+ +P +NL +
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-15
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 7/134 (5%)
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ D A G A Y KA+ +P+ A+ + +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAA 55
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
GN +Q A+ IDP Y+ AY +G+ S L ++ A+ Y+KA P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
Query: 227 AYCNMGVIYKNRGD 240
N+ + +
Sbjct: 116 YKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-15
Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 30/155 (19%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+ D A G ++ ++ A+ Y KA P A +CN Y G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL 301
A+ ER + + P + A M +AL+ L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLN---------------------------- 94
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336
+ VAYYKKAL + NL +A ++
Sbjct: 95 --KHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 30/149 (20%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
E AE G + E+A+ Y + + ++P + N A A + LG Y
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--YAG 64
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
A+ ++A+ + Y+ A +G+A + K
Sbjct: 65 AV----------------------------QDCERAICIDPAYSKAYGRMGLALSSLNKH 96
Query: 340 DMAIVFYELAFHFNPHCAEACNNLGVIYK 368
A+ +Y+ A +P +NL +
Sbjct: 97 VEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-12
Identities = 23/100 (23%), Positives = 42/100 (42%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ V +Y KA+ N A N AY ++ + A+ E A +P ++A
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401
+G+ + +AV Y+ AL + P+ +NL +
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-10
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445
++ L G +AA KAI NP A + N Y G+ + A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 446 DAYEQCLKIDPD 457
E+ + IDP
Sbjct: 67 QDCERAICIDPA 78
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 24/111 (21%), Positives = 36/111 (32%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N F A+ Y +E + N + A A+ +DP
Sbjct: 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+ A+ G+ + VEA Y KAL DP + L I L +
Sbjct: 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 3e-21
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 7/151 (4%)
Query: 320 WHYADAMY----NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 375
W A Y + + + + + NP +E LG Y +++
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSN 62
Query: 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLG 432
++ Y+ AL ++ ++ L V Q MI+KA+A + A L
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 433 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
+ + AI+ +++ + ++ N Q
Sbjct: 123 SDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 8e-17
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ + + + + N ++ LG Y + +++ Y A AE
Sbjct: 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82
Query: 362 NLGVIY---KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418
L + + + AL++ N +L L +Q A E+ +K +
Sbjct: 83 ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142
Query: 419 AANPTYAEAY 428
N
Sbjct: 143 DLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-16
Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 11/140 (7%)
Query: 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151
QN + + ++ +PQN+ G Y + + +Y +AL
Sbjct: 21 ASQQNPEAQL-QALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 152 AAECLAIVLTDLGTSLKLAGN---TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
L T L + T +AL +D + A L Y
Sbjct: 80 L-------YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 209 TALGCYEKAALERPMYAEAY 228
A+ ++K
Sbjct: 133 QAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 9e-15
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
+ + N + ++ Q + P S+ LG Y Q + +A+ AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 427 AYNNLG-VLYRDAGSISL--AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 483
Y L VLY A ++ L +D + A LLA + + + +A
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--LMLLASDAFMQANYA---QA 134
Query: 484 HRDWGK 489
W K
Sbjct: 135 IELWQK 140
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 1e-14
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 4/130 (3%)
Query: 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
P ++ A D N + +Q + ++ +P + + LG Y
Sbjct: 1 PKWQ-AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKN 263
Y +L Y +A R AE Y + + ++ A ++ LA+ N A
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 264 NMAIALTDLG 273
+A
Sbjct: 120 LLASDAFMQA 129
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 2e-13
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 10/135 (7%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
+ + ++ + A+P + LG + + + Y +AL+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 186 IDPHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
+ A Y L V +KA A + + +
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 243 SAIACYERCLAVSPN 257
AI +++ + ++
Sbjct: 133 QAIELWQKVMDLNSP 147
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 3e-10
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL---AFDSFSEAVKL 111
+N + ++L Y L+ N E + L Q + +A+ L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
D A + +A E + K + + +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 9e-10
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451
Q + + Q +A + ++ I ANP +E + LG Y S ++ AY Q
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 452 LKIDPDSRNAGQNRLLAMNYINEGHDD 478
L++ ++ + Y H
Sbjct: 71 LQLRGENAELYAALATVLYYQASQHMT 97
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 1e-20
Identities = 11/122 (9%), Positives = 38/122 (31%)
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
+ + + + ++ +++A ++ + L +Y ++
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ AA++ A A + G + A + +E ++ D + + +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQ 144
Query: 466 LL 467
Sbjct: 145 SY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 9e-20
Identities = 19/113 (16%), Positives = 40/113 (35%)
Query: 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
A K D +Y+ + + + A VF+ ++ + + L IY+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422
++ +A + Y +A ++ N + + G A E E I +
Sbjct: 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 5e-19
Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 3/136 (2%)
Query: 134 EAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A+++ + K + + G ++ + D +
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
L +Y Q+ A Y A + G A C+E
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 251 CLAVSPNFEIAKNNMA 266
+ S + ++ +
Sbjct: 130 VIQHSNDEKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-16
Identities = 10/94 (10%), Positives = 24/94 (25%)
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239
+ I Y+ + + + A + + + + IY+ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ A Y A+ N + L
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 4e-15
Identities = 16/88 (18%), Positives = 34/88 (38%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+G I + +++ Y+++ D + L Y +F A Y +AF +
Sbjct: 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPN 389
+ G KA EC+++ + +
Sbjct: 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 17/95 (17%), Positives = 35/95 (36%)
Query: 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112
SYA ++ + +A + + D NV+ +G Q++ + A D ++ A L
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
+ H G ++A E + +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 8/81 (9%), Positives = 24/81 (29%)
Query: 378 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437
+ +I + + + + +G+++ A + + L +Y+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 438 AGSISLAIDAYEQCLKIDPDS 458
A D Y + +
Sbjct: 83 KEQFQQAADLYAVAFALGKND 103
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 19/170 (11%), Positives = 41/170 (24%), Gaps = 45/170 (26%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRL--AFDSFSE 107
+ +I + +++ A + + ++ N GR+ A F
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFY--NKGRIEEAEVFFRF 61
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
D N +Y+ + + +AA+ Y
Sbjct: 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV-------------------------- 95
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
A + + ++ G L A C+E
Sbjct: 96 ---------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 4e-09
Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 30/153 (19%)
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
++ + + + + + N+G +E A +
Sbjct: 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73
Query: 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322
+A Q Y A +
Sbjct: 74 MGLAAIYQIK------------------------------EQFQQAADLYAVAFALGKND 103
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 355
+++ G + A +EL +
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A I + + +F A LY + + G C A + F ++
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 112 DPQNA 116
Sbjct: 134 SNDEK 138
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 54/264 (20%), Positives = 86/264 (32%), Gaps = 54/264 (20%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 245
LG + + A +EKA + N+GV+Y +G +L+ A
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAA 62
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDI 305
+ Y + A N + LG L + G + +
Sbjct: 63 SFYAK--A-------CDLNYSNGCHLLG-------NLYYSGQG------------VSQNT 94
Query: 306 NQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACN 361
N+ + YY KA YA+ +LG Y G+++ F A+ ++ A N + C
Sbjct: 95 NKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT 150
Query: 362 NLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEM 413
LG +Y +L KA+ Y A S N G +Y A
Sbjct: 151 ILGSLYDAGRGTPKDLKKALASYDKA--CDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 208
Query: 414 IEKAIAANPTYAEAYNNLGVLYRD 437
KA NLG + +
Sbjct: 209 YSKACELE--NGGGCFNLGAMQYN 230
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 56/284 (19%), Positives = 89/284 (31%), Gaps = 65/284 (22%)
Query: 178 QKYYEALKI-----DPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAY 228
+ + +A K D +NLGV+Y + + + A Y KA Y+
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77
Query: 229 CNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
+G +Y + +G + A+ Y + A A LG
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSK--A-------CDLKYAEGCASLG---------GI 119
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM- 341
+G + D + V Y+ KA N D LG Y G D+
Sbjct: 120 YHDGKV----------VTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLK 167
Query: 342 -AIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNN 396
A+ Y+ A + C N G +Y + N +A+ Y A + N
Sbjct: 168 KALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKA--CELENGGGCFN 223
Query: 397 LGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNNLGVLY 435
LG + G+ A E +K A + L L
Sbjct: 224 LGAMQ-YNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQLK 264
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 2e-19
Identities = 83/472 (17%), Positives = 139/472 (29%), Gaps = 71/472 (15%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-- 111
AN R V A Y+ + E G EA +G +G +A
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQ----VGTRDPAQIKQAEATYR 62
Query: 112 --DPQNACAHTHCGILYKDEGRLV-----EAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ A G L + EA KA LA++
Sbjct: 63 AAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLY---- 116
Query: 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM---QYDTALGCYEKAALER 221
L+ + + + + Y A ++Y Q+ + KAAL
Sbjct: 117 --LQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT 174
Query: 222 PMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTD----LGT 274
Y + +Y+ + + E VS A+ ++A LGT
Sbjct: 175 --TDICYVELATVYQKKQQPEQQAELLKQMEA--GVSRGTVTAQRVDSVARVLGDATLGT 230
Query: 275 KTYGRALLLFRLNGSNFQSPFFELVKL------EGDINQGVAYYKKALYYNWHYADAMYN 328
A L + + + L +L GD+ Q + Y + A
Sbjct: 231 PDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELL 288
Query: 329 LGVAY--GEMLKFDM--AIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECY 380
LG Y G+ + D A +E A A LG IY+ + KA++
Sbjct: 289 LGKLYYEGKWVPADAKAAEAHFEKAVGREV---AADYYLGQIYRRGYLGKVYPQKALDHL 345
Query: 381 QMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNNLGVLY 435
A + + + + ++ QGK A + A A + EA + L
Sbjct: 346 LTA--ARNGQNSADFAIAQLF-SQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLE 400
Query: 436 R--DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485
+ +Q L + +L A+ E ++ L E H
Sbjct: 401 APLTPAQRAEGQRLVQQELAAR-GTLAQSTLQLHALQ--EEDGEESLLEHHH 449
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 8e-19
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 171 GNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
G + Y +A+ A Y LG + L +Y A + P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIAL 269
++ N G E + + +A + + E I AI
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 7e-18
Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 373 LDKAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429
+AV Y+ A++ + ++ LG + G+ A ++ + P +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
++ + G ++ + + D
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 7e-16
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 20/123 (16%)
Query: 206 QYDTALGCYEKA---ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
A+ YEKA L+ AE Y +G ++ G+ A A + PN + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322
A+ L +LG Y + + + E ++ + YK+A+ + Y
Sbjct: 65 VFYAMVLYNLG--RYEQGV------------ELLLKIIAETSDDETIQSYKQAILF---Y 107
Query: 323 ADA 325
AD
Sbjct: 108 ADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-15
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 338 KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394
A+ +YE A AE LG ++ KA + PN
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 395 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452
+V G+ + E++ K IA + Y+ AI Y L
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-----YK------QAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-13
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 303 GDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359
G Q V YY+KA+ A+ LG + + ++ A P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
++ + ++ VE ++ +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 8e-13
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 19/125 (15%)
Query: 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
G +A Y KA+++ K AEC LG++ + G + +K P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECY----LGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE--AYCNMGVIYKNRGDLESAIAC 247
+ +V L +Y+ + K E +Y + AI
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY-------------KQAILF 106
Query: 248 YERCL 252
Y L
Sbjct: 107 YADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 403 VQGKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459
V G A EKAIA+ AE Y LG +R G A +K P+ +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 460 NAGQNRLLAMNYINEGHDDK 479
AM N G ++
Sbjct: 62 ALRVF--YAMVLYNLGRYEQ 79
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 96 NMGRL--AFDSFSEAVKL---DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+G A + +A+ A + G ++ G +A + P+++
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+VL +L G + G++ + + + Y A
Sbjct: 62 ALRVFYAMVLYNL-------GRYEQGVELLLKIIAETSDDE-----------TIQSYKQA 103
Query: 211 LGCYEKA 217
+ Y
Sbjct: 104 ILFYADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 66 DALALYEIVLE---KDSGNVEAHIGKGICLQMQNMGRL--AFDSFSEAVKLDPQNACAHT 120
A+ YE + + E ++G G + +G A + VK P +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTF--RTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 121 HCGILYKDEGRLVEAAESYHKALSADPSYK 150
++ + GR + E K ++ +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-18
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A + A+AY +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-16
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 417 AI-------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
AI A+AY +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 20/84 (23%), Positives = 29/84 (34%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGT 274
+ V +A A +G
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGN 87
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----- 356
+ D + + +Y KA + + N Y E ++ E A
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76
Query: 357 --AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
A+A +G Y + A+ Y +L+
Sbjct: 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451
LG + D A + +KA +PT N +Y + G + + E+
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 452 LKIDPDSRNAGQNR 465
+++ ++R +
Sbjct: 65 IEVGRENREDYRQI 78
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 34/122 (27%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR------------- 69
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 70 ---------------------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
Query: 221 RP 222
Sbjct: 109 HR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQN-------ACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N A A+ G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 1e-16
Identities = 30/235 (12%), Positives = 54/235 (22%), Gaps = 49/235 (20%)
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCNM 231
K+ EA A +Y + + A + KAA Y
Sbjct: 31 YKFEEA-------ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA 83
Query: 232 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291
+K+ G+ +A+ E + + + A +LG
Sbjct: 84 YKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILENDL----------- 131
Query: 292 QSPFFELVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVF 345
D + + Y+ A ++ A
Sbjct: 132 -----------HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180
Query: 346 YELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
Y + + G+ + A Q S PNF+ S
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 2e-14
Identities = 37/229 (16%), Positives = 78/229 (34%), Gaps = 29/229 (12%)
Query: 300 KLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353
+L ++N + KA + + A+ E A
Sbjct: 48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF 107
Query: 354 PH------CAEACNNLGVIY-KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVV 400
H A LG I D + KA++CY++A ++ +
Sbjct: 108 THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167
Query: 401 YTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453
+ G+ A+++ K I + + + + G+ A A ++
Sbjct: 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227
Query: 454 IDPDSRNAGQNRLLA--MNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 500
DP+ ++ ++ L ++ +NEG ++L E +++ FMRL +
Sbjct: 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF-DNFMRLDKWKIT 275
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-12
Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 14/157 (8%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
+Y+ L A +S+ KA E + K GN+ + +
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA-GNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 183 ALKIDPHY------APAYYNLGVVY-SELMQYDTALGCYEKAAL------ERPMYAEAYC 229
A++I H A + LG + ++L Y A+ CYE A + + +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+ G A Y + + S +++ ++
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 23/157 (14%), Positives = 41/157 (26%), Gaps = 19/157 (12%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 376
AD Y + ++A + A +K N A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 377 VECYQMALSIKPNF------SQSLNNLGVVY-TVQGKMDAAAEMIEKAIA------ANPT 423
V+ + A+ I + + LG + A + E A +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460
+ + L G A D Y + +K +R
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 2e-16
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------DRDN 372
++ A L +G+ + A +P A ++ D
Sbjct: 199 NFYQAHDYL--LHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 373 LDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430
L +++ N S V V+GK D + + I I ++ Y
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVL 315
Query: 431 LGVLYRDAGSISLAIDAYEQCLKIDPD 457
LG +Y G A DAY + P
Sbjct: 316 LGKVYEMKGMNREAADAYLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 4e-16
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 9/169 (5%)
Query: 99 RLAFDSFSEAVKLDPQNACAHT-----HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
K+ P T H +L+ D+ L A+E + + + P + A
Sbjct: 177 PWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR 236
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKIDPHYAPAYYNLGVVYSELMQYDTA 210
A+V + L + + L + + Y V + D +
Sbjct: 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 296
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
++ M Y +G +Y+ +G A Y + P
Sbjct: 297 YQAINTG-IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 4e-15
Identities = 16/164 (9%), Positives = 49/164 (29%), Gaps = 13/164 (7%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--------KFDMAIVFYELAFHF- 352
+ +N+ + + + + A + + +
Sbjct: 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271
Query: 353 -NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411
+ + V + D++ + + ++ ++ + LG VY ++G AA
Sbjct: 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAA 330
Query: 412 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
+ A P Y +++ S+ + ++ L +
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQ--TSVPYVVPYLDKFLASE 372
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 8e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 19/169 (11%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR--------LAFDSFSEAVKL 111
A L +++ A K + +++ V L
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270
Query: 112 DPQNACAHTHC--GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
N + + + +G+ E+ ++ + + + S+ L VL LG ++
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW------LNYVL--LGKVYEM 322
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVV-YSELMQYDTALGCYEKA 217
G ++ Y A + P Y+ + + + L + +
Sbjct: 323 KGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLAS 371
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 9e-14
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 16/161 (9%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYK--------DEGRLVEAAESYHKALSADPSYKPA 152
A + E V+ P+ A ++ DE +L ++ +
Sbjct: 218 ASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
S + G T + Q + ++ + Y LG VY A
Sbjct: 278 IIYQI-----KAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAAD 331
Query: 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y A RP Y I++ + + ++ LA
Sbjct: 332 AYLTAFNLRPGANTLYWIENGIFQT--SVPYVVPYLDKFLA 370
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 6e-12
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLG-----VIYKDRDNLDKAVECYQMALSIKPN 389
+ L E PH N +++ D +L++A E + P
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231
Query: 390 FSQSLNNLGVVYTV--------QGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAG 439
F+ + +V V + ++ A I+ + + Y V G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 440 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
+ A + ++ N LL Y +G + +
Sbjct: 292 KTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNRE 328
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-16
Identities = 25/119 (21%), Positives = 46/119 (38%)
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
+ H NP A N G + + +A++ Y A+ P ++ +N YT
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
+ A + E+ I PT+ + Y + A+D Y++ L +D + A
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 8e-16
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
+H +P LA+++ + G G+ ++ Y EA+K +P A Y N
Sbjct: 3 HHHHHHSHMNPD-------LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSN 55
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
Y++L+++ AL E+ P + + Y + D A+ Y++ L +
Sbjct: 56 RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115
Query: 257 NFEIAKNNMAIAL 269
+ + A + +
Sbjct: 116 SCKEAADGYQRCM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 20/121 (16%), Positives = 43/121 (35%)
Query: 311 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370
++ + N A + N G + + A+ Y A NP A+ +N Y
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430
A++ + + ++P F + A ++ +KA+ + + EA +
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 431 L 431
Sbjct: 124 Y 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYK 236
++ ++P A N G + Y A+ Y +A ++R P A+ Y N Y
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEA-IKRNPKDAKLYSNRAACYT 61
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG-----TKTYGRALLL 283
+ + A+ E C+ + P F A AL + Y +AL L
Sbjct: 62 KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 24/159 (15%), Positives = 42/159 (26%), Gaps = 30/159 (18%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ + P A N G +GD A+ Y + +P +N A T L
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333
+ AL ++ + + A
Sbjct: 65 E--FQLAL----------------------------KDCEECIQLEPTFIKGYTRKAAAL 94
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 372
M + A+ Y+ A + C EA + + N
Sbjct: 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
E + +GD Q + +Y +A+ N A N Y ++L+F +A+ E P
Sbjct: 25 ECFQ-KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
+ + + KA++ YQ AL + + ++ +
Sbjct: 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 20/101 (19%), Positives = 40/101 (39%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y ++++ + + + + C +LA E ++L+P
Sbjct: 24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+T + +A + Y KAL D S K AA+
Sbjct: 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 378 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437
+ + P+ + + N G +G A + +AI NP A+ Y+N Y
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 438 AGSISLAIDAYEQCLKIDPD 457
LA+ E+C++++P
Sbjct: 63 LLEFQLALKDCEECIQLEPT 82
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 7e-16
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
++ + G R KA++ Y ALSI P L+N Y+ G+ + AAE E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
A +P Y++A++ LG+ D A +AYE+ ++ + + + R L
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-14
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
S P E + L G + I Y +AL I P N YS
Sbjct: 1 GPRSMAPTPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
Q++ A E A + P Y++A+ +G+ + D + A YE+ + N
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 265 MAIA 268
+
Sbjct: 119 RGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 25/111 (22%), Positives = 41/111 (36%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+D + + G A ++ AI Y A P +N Y +KA E ++
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433
A + P +S++ + LG+ A E EK I A G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 1/131 (0%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ ++ + Y +AL + N AY + + A ELA +P ++A +
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421
LG+ D + A E Y+ + + N G + T + K++ A E
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIEEANRGAEPPADDV 142
Query: 422 PTYAEAYNNLG 432
A A G
Sbjct: 143 DDAAGASRGAG 153
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
+ + G +Y A+ Y +A P N Y G E A E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 251 CLAVSPNFEIAKNNMAIALTDLG-----TKTYGRALLL 283
V P + A + + +A D+ + Y + +
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 2/130 (1%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N +R ++ A+ LY L N + A + A +DP+
Sbjct: 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNT 173
+ A + G+ D A E+Y K + A+ + A L + + + A
Sbjct: 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPP 138
Query: 174 QDGIQKYYEA 183
D + A
Sbjct: 139 ADDVDDAAGA 148
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 2e-15
Identities = 52/385 (13%), Positives = 99/385 (25%), Gaps = 67/385 (17%)
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-----AYYNLGVVYSELMQY 207
AE A+ GN + + AL+ P A LG V +
Sbjct: 14 AEFNAL----RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 69
Query: 208 DTALGCYEKAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L ++ + I +G L++A E+ ++
Sbjct: 70 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF------QLI 123
Query: 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH 321
L RA LL+ L + E G+
Sbjct: 124 NEQHLEQLPMHEFLVRIRAQLLWAWA---------RLDEAEASARSGIEVLSSYQ--PQQ 172
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFH-------FNPHCAEACNNLGVIYKDRDNLD 374
+ L D A + + + A + ++ +
Sbjct: 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232
Query: 375 KAVECYQMAL----SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY 424
A + + N+ + G+ + A ++E+
Sbjct: 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG--------- 475
L LY AG S A LK+ A + + +++ EG
Sbjct: 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKL------ANRTGFI-SHFVIEGEAMAQQLRQ 345
Query: 476 --HDDKLFEAHRDWGKRFMRLYSQY 498
+ L E + +R +R +Q+
Sbjct: 346 LIQLNTLPELEQHRAQRILREINQH 370
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 41/304 (13%), Positives = 80/304 (26%), Gaps = 38/304 (12%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----IAKNNMAIALT 270
K E M+AE + N G+ + A + L P +A + + L
Sbjct: 5 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 64
Query: 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 330
G R+L L + + L I Q + + A
Sbjct: 65 CKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG---FLQTAWETQEKA 119
Query: 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390
E P + LD+A + + + ++
Sbjct: 120 FQLIN-----------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168
Query: 391 SQS-----LNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDA 438
L L +G +D A + + + + A + ++
Sbjct: 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228
Query: 439 GSISLAIDAYEQCLKIDPDSR--NAGQNRLLAMNYINEGHDDK---LFEAHRDWGKRFMR 493
G + A + K + + GQ R +A I G + + E + +
Sbjct: 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288
Query: 494 LYSQ 497
+
Sbjct: 289 MSDL 292
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 9e-11
Identities = 42/360 (11%), Positives = 85/360 (23%), Gaps = 86/360 (23%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRL--AFDSFSE 107
A + + +A L ++ LE+ + A G L + G L + +
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQ 78
Query: 108 AVKL------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161
++ + + +G L A E+ KA ++
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA-------------FQLINE 125
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA---- 217
L P + + + D A
Sbjct: 126 QHLEQL--------------------PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165
Query: 218 -ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
+ + + + RGDL++A + R + N + + ++ A
Sbjct: 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK------ 219
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY----YNWHYADAMYNLGVA 332
R + GD + + N N+ A
Sbjct: 220 -VRVIYWQMT----------------GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262
Query: 333 YGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 386
+ +F+ A + E L +Y A AL +
Sbjct: 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-15
Identities = 29/243 (11%), Positives = 62/243 (25%), Gaps = 52/243 (21%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
Y++ A A + + + GD + A ++ A AL
Sbjct: 5 PGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKA---------AAQGDGDAL 53
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
L ++ D Q +KA+ L
Sbjct: 54 ALLA---------QLKIRNPQQA-----------DYPQARQLAEKAVEAG--SKSGEIVL 91
Query: 330 GVAY--GEMLK--FDMAIVFYELAFH--FNPHCAEACNNLGVIYKD----RDNLDKAVEC 379
+ AI + A + +A LG+IY ++ KA E
Sbjct: 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151
Query: 380 YQMALSIKPNFSQSLNNLGVVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433
++ + S + G+++ ++ A + + +
Sbjct: 152 FKGS-SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208
Query: 434 LYR 436
+ +
Sbjct: 209 ISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 29/212 (13%), Positives = 55/212 (25%), Gaps = 52/212 (24%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIA 246
A Y L + Y A +KAA + +A + + D A
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQ 74
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEG--- 303
E+ A + L +N +
Sbjct: 75 LAEK--A-------VEAGSKSGEIVLA---------RVLVNR-------------QAGAT 103
Query: 304 DINQGVAYYKKA--LYYNWHYADAMYNLGVAY--GEMLK--FDMAIVFYELAFHFNPHCA 357
D+ + + A + DA LG+ Y G A +++ +
Sbjct: 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-LSRTG 162
Query: 358 EACNNLGVIYKD------RDNLDKAVECYQMA 383
A G++++ N KA+ ++
Sbjct: 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 9e-11
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 32/155 (20%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYELAFHFNPHCAE- 358
GD + + +KA DA+ L + + A E A E
Sbjct: 32 GDYQKAEYWAQKAA--AQGDGDALALLAQLKIRNPQQADYPQARQLAEKA-------VEA 82
Query: 359 ----ACNNLGVIYKD----RDNLDKAVECYQMA----LSIKPNFSQSLNNLGVVYT---- 402
L + + ++ A+ Q A S +Q LG++Y
Sbjct: 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ--MLLGLIYASGVH 140
Query: 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437
A+E + + ++ A G++++
Sbjct: 141 GPEDDVKASEYFKGS-SSLSRTGYAEYWAGMMFQQ 174
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---VQGKMDAAAEM 413
A L + + KA Q A +L L + Q A ++
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQKA--AAQGDGDALALLAQLKIRNPQQADYPQARQL 75
Query: 414 IEKAIAANPTYAEAYNNLGVLYRD 437
EK A L + +
Sbjct: 76 AEK--AVEAGSKSGEIVLARVLVN 97
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 31/274 (11%), Positives = 60/274 (21%), Gaps = 99/274 (36%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ A + + G +A K AA G+
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQK----------AAA---------------QGD-- 49
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSE--LMQ-YDTALGCYEKAALERPMYAEAYCNM 231
A L + Y A EKA +
Sbjct: 50 ----------------GDALALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVL 91
Query: 232 GVIYKN-RG---DLESAIACYER--CLAVSPNFEIAKNNMAIALTD-LGTKTYGRALLLF 284
+ N + D+ AI + + S A+ + + +
Sbjct: 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE-------- 143
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEMLKFD 340
D + Y+K + + A Y G+ + ++ +
Sbjct: 144 -------------------DDVKASEYFKGSSSLS-RTGYAEYWAGMMFQQGEKGFIEPN 183
Query: 341 M--AIVFYELAFHFNPHC----AEACNNLGVIYK 368
A+ + ++ C C I K
Sbjct: 184 KQKALHWLNVS------CLEGFDTGCEEFDRISK 211
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-14
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
LK GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+P + + Y + E A YE L N K +
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
N+D A++CY A+ + P+ +N Y +G A E K + P + + Y+
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78
Query: 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
A YE+ LK + ++
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-08
Identities = 17/109 (15%), Positives = 36/109 (33%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
+ +KP++ + + + + A E+ + + L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-06
Identities = 18/100 (18%), Positives = 35/100 (35%)
Query: 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119
S DAL Y ++ D N + + + + A++ + V L P +
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75
Query: 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ + R EA +Y + L + + E L +
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
D AL CY +A P Y N Y +GD + A + + + P++ +
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78
Query: 266 AIALTDLG 273
A AL L
Sbjct: 79 AAALEFLN 86
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A +SEA+KLDP N +++ Y +G +A E K + P +
Sbjct: 23 ALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG-------Y 75
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197
+ +L+ ++ + Y E LK + + L
Sbjct: 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-14
Identities = 20/112 (17%), Positives = 35/112 (31%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
AE G Y + + AV+ Y + P ++ +N A K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
AI +P + AY + A++ + D + N R +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-14
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 167 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L G + ++ Y E +K P A Y N ++LM + A+ KA
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ P + AY + SA+ + + I
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 16/111 (14%), Positives = 33/111 (29%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+ G Y + A+ Y P A +N + +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433
A+ PNF ++ + +A E ++ A + + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS-LKLAGNTQDGIQKYYEALKID 187
+ A ++Y + + P A ++ + KL + + I +A++ D
Sbjct: 17 KSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKL-MSFPEAIADCNKAIEKD 68
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
P++ AY + +Y +AL + A + +
Sbjct: 69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 15/68 (22%), Positives = 21/68 (30%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+ A+ Y + P A Y N AIA + + PNF A
Sbjct: 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78
Query: 266 AIALTDLG 273
A A +
Sbjct: 79 ATAQIAVK 86
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 13/104 (12%), Positives = 34/104 (32%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+++ + +A+ Y ++++ + + + L A ++A++ DP
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A+ A E+ A + D + I
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 30/143 (20%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282
M AE G Y + D +A+ Y + +P +N A AL L + + A+
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAI- 58
Query: 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342
A KA+ + ++ A A + ++ A
Sbjct: 59 ---------------------------ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 91
Query: 343 IVFYELAFHFNPHCAEACNNLGV 365
+ + A + + +
Sbjct: 92 LETLDAARTKDAEVNNGSSAREI 114
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-13
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 404 QGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462
QG ++ A + +E+ + P EAY +G YR G A++ Y+ ++++PDS
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 463 QNRLL--AMNYINEGHDDKLFEAH 484
+++ +N+ N+ ++L H
Sbjct: 73 ARKMVMDILNFYNKDMYNQLEHHH 96
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ AL E+ P+ EAY MG Y+ GD + A+ Y+ +
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 253 AVSPNFEIAKNN 264
++P+ +
Sbjct: 63 ELNPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
L G+ ++ +Q E L+ +P AYY +G Y +L + AL Y+ A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACY 248
P R + + Y
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFY 84
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
++ +++ A++ + L +P ++ +G Y G A + AI
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 421 NPTYAEAYNN 430
NP
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQ 381
+ N G + A+ E P EA +G Y+ + KA+ YQ
Sbjct: 7 IKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59
Query: 382 MALSIKPNF 390
A+ + P+
Sbjct: 60 SAIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-07
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 302 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360
+GDI + ++ L +A Y +G AY ++ + A+ Y+ A NP
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL- 71
Query: 361 NNLGVIYKDRDNLDKAVECYQ 381
+ R + + Y
Sbjct: 72 -------QARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEA 108
D L L ++ +AL E L+ + EA+ G + + A +++ A
Sbjct: 2 DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
++L+P + +++ Y+K +
Sbjct: 62 IELNPDSPALQAR--------KMVMDILNFYNKDM 88
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 93 QMQNMGRL--AFDSFSEAVKLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSY 149
++ N G + A + E ++ +P A+ G Y+ G +A +Y A+ +P
Sbjct: 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
Query: 150 KPAAE 154
PA +
Sbjct: 69 -PALQ 72
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-13
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277
Y + Y G +A+ YE + V P+ + AK + K +
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133
Query: 278 GRAL 281
RA+
Sbjct: 134 ERAI 137
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 18/106 (16%), Positives = 38/106 (35%)
Query: 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433
+ A++ Y A+ + P+ + N + Y A +AI + Y + Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479
G A+ YE +K+ P ++A + + ++
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 6/135 (4%)
Query: 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
+ K D + +Y +A+ N A N +AY + A+ A +
Sbjct: 22 DYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
+ A+ Y+ + +KP+ + + + E+
Sbjct: 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-----ER 135
Query: 417 AIAANPTYAEAYNNL 431
AIA + ++L
Sbjct: 136 AIAGDEHKRSVVDSL 150
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 15/104 (14%), Positives = 30/104 (28%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + +A+ Y +E + N + + + A + A++LD +
Sbjct: 21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ G+ A Y + P K A
Sbjct: 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-13
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 162 DLGTSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
+L K GN ++ Y EA+K DP A Y N ++LM++ AL
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+ + + Y + A YE L V P+ E A+ +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 351 HFNPHCAEACNNLG-VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409
+ NP A+ N G +K D A+ Y A+ P + +N T +
Sbjct: 7 YINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65
Query: 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
A + + I + + + Y S A AYE L++DP + A +
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 8e-08
Identities = 20/118 (16%), Positives = 37/118 (31%)
Query: 314 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 373
+ Y N A N G Y + + A+ Y A +P A +N
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
+A++ + + F + + A E A+ +P+ EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 20/104 (19%), Positives = 37/104 (35%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y +++D N + + CL + A D ++LD +
Sbjct: 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
+ +A +Y AL DPS + A E +
Sbjct: 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 20/92 (21%), Positives = 31/92 (33%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
I+P A N G Y + Y TA+ Y +A P A Y N +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ A+ + C+ + F A L +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 30/149 (20%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ A P A+ N G Y +GD +A+ Y + P I +N A LT L
Sbjct: 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62
Query: 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334
+ RAL + + +
Sbjct: 63 --FQRAL----------------------------DDCDTCIRLDSKFIKGYIRKAACLV 92
Query: 335 EMLKFDMAIVFYELAFHFNPHCAEACNNL 363
M ++ A YE A +P EA +
Sbjct: 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 19/114 (16%), Positives = 40/114 (35%)
Query: 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
+A CY A++ P + N + Y + + A +A+ + +A+ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485
G + S AI ++ + + R + + + I + E R
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS-LKLAGNTQDGIQKYYEA 183
L+ + EAA Y +A++ +P +A+ T+ LK+ + + A
Sbjct: 19 LFV-GRKYPEAAACYGRAITRNPL-------VAVYYTNRALCYLKM-QQPEQALADCRRA 69
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
L++D A++ LG E+ YD A+ ++A
Sbjct: 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 17/85 (20%), Positives = 30/85 (35%)
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANP 422
G D A +++A +
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
L + A Y +A+ N A N + Y +M + + A+ A +
Sbjct: 18 RLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+A LG + ++ D+A+ Q A S+
Sbjct: 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 266 AIALTDLG-----TKTYGRALLL 283
++ RA L
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSL 106
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 19/98 (19%), Positives = 34/98 (34%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N L K+ +A A Y + ++ + + +C A A++LD Q+
Sbjct: 17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
AH G + EA + +A S +
Sbjct: 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 65.8 bits (159), Expect = 3e-11
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+ + LG +T ++ + + +LG + Q A Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
A P + Y + ++ ++GD + I Y R +AV F A N+ AL+
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR 237
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 59.6 bits (143), Expect = 3e-09
Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 16/238 (6%)
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK--LEGDI 305
Y++ L + + K DL + + + N +P V+ L +
Sbjct: 40 YQKMLVTDLEYALDKK----VEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL 95
Query: 306 NQGVAYYKKAL-YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN--- 361
+Y + L + + + + + + + C+ C
Sbjct: 96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL 155
Query: 362 -NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
+LG I + R+ +A Y+ A + P+ Q N L ++ + +G ++IA
Sbjct: 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 478
+ A NL A E K + Y+++ +
Sbjct: 216 KFPFPAASTNLQKALSKALE-----SRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEK 268
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 50.4 bits (119), Expect = 2e-06
Identities = 18/132 (13%), Positives = 37/132 (28%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
K + + + H + P + L LG + T Y A ++
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
P Y L ++ S + T + Y ++ + + A N+ + +
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
Query: 247 CYERCLAVSPNF 258
F
Sbjct: 242 TKWGVSDFIKAF 253
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 4e-04
Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 15/200 (7%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
G + +N A + A +L P N + IL +G + Y ++++
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207
+ PAA + T+ G+ + +A + L +L
Sbjct: 219 F-PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFI----KFHGHVYLSKSLEKLSPLR 273
Query: 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ +++ ++ ++ ++ VI + S E +
Sbjct: 274 EKLEEQFKELLFQKAFNSQQLVHVTVI---------NLFQLHHLRDFSNETEQHTYSQDE 324
Query: 268 ALTDLGTKTYGRALLLFRLN 287
L + L
Sbjct: 325 QLCWTQLLALFMSFLGILCK 344
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 9e-11
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 1/131 (0%)
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
+ R +A CY A++ P + N + Y + + A +A+ + +
Sbjct: 15 FVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 486
A+ LG + S AI ++ + + R + + + I + E R
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133
Query: 487 WGKRFMRLYSQ 497
+ + Y
Sbjct: 134 HQESELHSYLT 144
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
LK GN + Y A+ +P A Y N + Y ++ Q + AL +A
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+A+ +G + AIA +R +++
Sbjct: 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429
G D A +++A + +
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 19/103 (18%), Positives = 34/103 (33%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
+ AH G + EA + +A S +
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 266 AIALTDLG-----TKTYGRALLLFRLNGSNFQSPFFELVKLE 302
++ RA L + NF +++
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 18/94 (19%), Positives = 35/94 (37%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395
LG + ++ D+A+ Q A S+ +
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 372 NLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428
+ A+ Y AL + N + D A KAI + +A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102
Query: 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
G + A+ ++C+ ++P ++
Sbjct: 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 170 AGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
G+ + Y +AL +D A + N + +L YD A KA + +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
A + G L+ A+ +RC+++ P ++ + +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYY 181
L+K G A +Y +AL D + + A A LKL + +
Sbjct: 38 LFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH------LKL-EDYDKAETEAS 89
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
+A++ D A Y +L + D A+ ++
Sbjct: 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DNLDKAVECYQMALSIKPNF 390
+ A+ Y A + + V++++R ++ DKA A+
Sbjct: 43 DYGGALAAYTQALGLDATPQDQA----VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
++L G++D A +++ ++ P L
Sbjct: 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 297 ELVKLEGDINQGVAYYKKALYYN-WHYADAMY--NLGVAYGEMLKFDMAIVFYELAFHFN 353
EL K GD +A Y +AL + A+ N + ++ +D A A +
Sbjct: 37 ELFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+A + LD+AV Q +S++P
Sbjct: 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIG---KGIC-LQMQNMGRLAFDSFSEAVKLDPQNACA 118
+ ALA Y L D+ + + + C L++++ + ++ S+A++ D + A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA-SKAIEKDGGDVKA 101
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156
+ GRL +A + +S +P K E L
Sbjct: 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 76/507 (14%), Positives = 154/507 (30%), Gaps = 107/507 (21%)
Query: 433 VLYRDAGS--ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 490
++ GS +A+D CL + + + ++N + + +
Sbjct: 154 LIDGVLGSGKTWVALDV---CLSYKVQCKMDFK-----IFWLNLKNCNS----PETVLEM 201
Query: 491 FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVV---VYS 547
+L Q + T + + HS+ + L Y+N +V V +
Sbjct: 202 LQKLLYQIDP-NWTSRSDHS-----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 548 A-VVKA-DAK-----TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 600
A A + T RF++ +D + ++ +L++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCR 314
Query: 601 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ--KHV--EELIRL 656
L P +++ I +S+ D T KHV ++L +
Sbjct: 315 PQ-DLPREVLTTNPRRLSIIA---------------ESIRDGLATWDNWKHVNCDKLTTI 358
Query: 657 PECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQV-WARILCAVPNSRLV 715
E L E F F A I +L + W ++ + +V
Sbjct: 359 IESSLNVLEPAE---------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVV 408
Query: 716 VKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM-QAYSLMDISLDTFPYA 773
K K + ++ + LE L+V L L H + Y++ TF
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYAL-HRSIVDHYNI----PKTFDSD 462
Query: 774 GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-- 831
Y ++H +G HL E + L + D
Sbjct: 463 DLIPPYLDQY-----------FYSH-IG---------HHLKNIEHPERMTLFRMVFLDFR 501
Query: 832 --------VTALANLRMSLRDLMS-----KSPVCDGQNFALGLESTYRNMWHRYCKGDVP 878
+ N S+ + + K +CD L + + + + ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK-IEENLI 560
Query: 879 SLKRMEMLQQQVVSEEPSKFSEPTKII 905
K ++L+ +++E+ + F E K +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 166 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
K GN+ ++ + Y + + P Y N + +L +Y A+ ++
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNN 264
+ Y+ + A+ + + V E +
Sbjct: 66 RYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
E G + +AV CY ++ +P +N + G+ A +M ++
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQN 464
+ T + YR A+ + + + +D ++
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIVLTDLGTSLKLAGNTQDGIQKY 180
L+K +G EA Y + ++A P A L +KL G IQ
Sbjct: 14 LFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMAL----------IKL-GEYTQAIQMC 61
Query: 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228
+ L+ + Y L A+G + +E E Y
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-06
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
Y A+ CY++ +P Y N + G+ AI ++ L + E
Sbjct: 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78
Query: 266 AIAL 269
+
Sbjct: 79 KLQY 82
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+ G + + + A+ Y+ P +N + +A++ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430
L + Y A ++ + E Y+
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-09
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQM 382
+ +L F+ E + NP A+ G + + + + +A+ ++
Sbjct: 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKM-----------DAAAEMIEKAIAANPTYAEAYNNL 431
AL I P +++ +G YT + D A + ++A+ P +L
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
Query: 432 GVLYRD 437
+ +
Sbjct: 132 EMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 2e-08
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI----------EKAIAANPT 423
++ + + P + +L G V + + ++ E+A+ +P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 424 YAEAYNNLGVLYRDAGSI-----------SLAIDAYEQCLKIDPDS 458
EA +G Y + LA ++Q + PD+
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-08
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 17/128 (13%)
Query: 126 YKDEGRLV---EAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQK 179
+ R++ + + ++P VL +L + Q+ I K
Sbjct: 9 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 68
Query: 180 YYEALKIDPHYAPAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 228
+ EAL IDP A + +G Y+ +D A +++A E+P
Sbjct: 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128
Query: 229 CNMGVIYK 236
++ + K
Sbjct: 129 KSLEMTAK 136
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-07
Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 43/158 (27%)
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL 301
E E +P L +L S F +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLEL--------------------SQFHSISDA 58
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ I + + +++AL + +A++ +G AY AF P EA
Sbjct: 59 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAY------------TSFAF-LTPDETEA-- 103
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399
+ N D A + +Q A+ +P+ + L +L +
Sbjct: 104 --------KHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 4e-09
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 25/171 (14%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNT 173
+H H E + A+ + + E + + G
Sbjct: 2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEI 54
Query: 174 QDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 217
+ I KY EAL H NL Y++ Y A+ K
Sbjct: 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+A +GV G LE A + +++PN +N+ +
Sbjct: 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 372 NLDKAVECYQMALSIKPNFSQS----------------LNNLGVVYTVQGKMDAAAEMIE 415
+++A+ Y+ AL + + NL Y A +
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
K + + +A LGV G + A + + ++P++ +
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 21/145 (14%)
Query: 238 RGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKTYG-RALLLFRLNGSNFQSPF 295
+ ++ AI Y+ L E + ++ A +
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN--------- 101
Query: 296 FELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 355
D + + + K L + + A+Y LGVA + A A NP+
Sbjct: 102 -------KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
Query: 356 CAEACNNLGVI---YKDRDNLDKAV 377
+ N+ + K+ DK
Sbjct: 155 NLDIRNSYELCVNKLKEARKKDKLT 179
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-09
Identities = 29/142 (20%), Positives = 41/142 (28%), Gaps = 28/142 (19%)
Query: 304 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEA 359
D+ + + YY KA N +L + A C
Sbjct: 10 DLKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSKA------CELNSGNG 59
Query: 360 CNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAA 410
C LG Y++ + +L KA + Y A N LG GK A
Sbjct: 60 CRFLGDFYENGKYVKKDLRKAAQYYSKA--CGLNDQDGCLILGYKQY-AGKGVVKNEKQA 116
Query: 411 AEMIEKAIAANPTYAEAYNNLG 432
+ EK A +A L
Sbjct: 117 VKTFEK--ACRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 7e-07
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 20/94 (21%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIVFYELAFHFNPHC- 356
+ + + Y KA N + LG Y G+ +K A +Y A C
Sbjct: 38 QINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA------CG 89
Query: 357 ---AEACNNLGVIYKD----RDNLDKAVECYQMA 383
+ C LG N +AV+ ++ A
Sbjct: 90 LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAA 411
C +L + N K + A + N LG Y GK + AA
Sbjct: 27 MFGCLSLVSNSQI--NKQKLFQYLSKA--CELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81
Query: 412 EMIEKAIAANPTYAEAYNNLGVLYRD 437
+ KA + LG
Sbjct: 82 QYYSKA--CGLNDQDGCLILGYKQYA 105
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 5e-06
Identities = 28/169 (16%), Positives = 45/169 (26%), Gaps = 54/169 (31%)
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
A+ Y KA ++ + + + + A + N
Sbjct: 11 LKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSK--A-------CELNSG 57
Query: 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEG---DINQGVAYYKKALYYNWHYA 323
LG F NG + D+ + YY KA N
Sbjct: 58 NGCRFLG---------DFYENG-------------KYVKKDLRKAAQYYSKACGLN--DQ 93
Query: 324 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHC----AEACNNLG 364
D LG G+ + + A+ +E A C +AC L
Sbjct: 94 DGCLILGYKQYAGKGVVKNEKQAVKTFEKA------CRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 24/148 (16%), Positives = 33/148 (22%), Gaps = 44/148 (29%)
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 245
+L KA +G Y+N + DL A
Sbjct: 26 EMFGCLSLVSNSQI--NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEG-- 303
Y + A N LG K G +G
Sbjct: 82 QYYSK--A-------CGLNDQDGCLILGYK-Q--------YAG-------------KGVV 110
Query: 304 -DINQGVAYYKKALYYNWHYADAMYNLG 330
+ Q V ++KA DA L
Sbjct: 111 KNEKQAVKTFEKAC--RLGSEDACGILN 136
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-08
Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)
Query: 312 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGV 365
++ + Y + + + ++ I+ + + N +
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 366 IYKDRDNLDKAVECYQMALSIKPNFSQS-------LNNLGVVYTVQGKMDAAAEMIEKAI 418
IY + L K ++ ++ L + N + + + + + KAI
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 419 A------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
+ + Y G R I+ +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
+Y + G L + + + + L + E V + +L L ++ +
Sbjct: 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216
Query: 178 QKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+ +A++I YY G +L + + K A
Sbjct: 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 13/143 (9%), Positives = 32/143 (22%), Gaps = 25/143 (17%)
Query: 171 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 217
+ + I + + L + +Y+E + +E+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE------IAKNNMAIALTD 271
+ N E ++ + + +S L
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248
Query: 272 LGTKT------YGRALLLFRLNG 288
L + Y +A F +
Sbjct: 249 LEYEEAEIEDAYKKASFFFDILE 271
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 36/220 (16%)
Query: 78 DSGNVEAHIGKG----------ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127
D + IG+G +Q G + V L P A
Sbjct: 61 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSI------VYLKPSYAFGSVGKEKFQI 114
Query: 128 DEGRLVEA-AESYHKALSADPSYKPAAECLAIVLT--DLGTSLKLAGNTQDGIQKYYEAL 184
++ + + + E L + GT G + + +Y + +
Sbjct: 115 PPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIV 174
Query: 185 KIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAY 228
+ ++ NL + + +L + A+ KA LE +
Sbjct: 175 SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA-LELDSNNEKGL 233
Query: 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
G + D E A A +++ L + PN + AK +A+
Sbjct: 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFS 391
+ F+ A +E+ + G +Y +A+ Y+ +S + +FS
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 392 QS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439
NL + + AA E KA+ + + + G +
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244
Query: 440 SISLAIDAYEQCLKIDPDSRNA 461
LA +++ L++ P+++ A
Sbjct: 245 DFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 20/179 (11%)
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
L ++ A +E + E+ + G +Y G + A+ Y++ ++
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 263 NNMAIALTDLGTKTYG-RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH 321
N A L ++ A+ +L + + KAL + +
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQ----------------AFSAAIESCNKALELDSN 228
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---YKDRDNLDKAV 377
+ G A+ + F++A ++ P+ A L V + + +K +
Sbjct: 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 3e-07
Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 40/153 (26%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
G EAA + +A+ + P EA
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPP-----------------------------EEAFDHA 53
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE-----------AYCNMGVIYK 236
A + L + L +D AL +KA E A + +
Sbjct: 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 113
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
G A+ +++ + + + +
Sbjct: 114 GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 7e-07
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ L + L + + AL + + + ++ + + K CL LA + +
Sbjct: 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
N+ + + + + L+A+P A +L
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA-------CELAVQ 117
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
G ++ ++ + LK++ G V M +ALG
Sbjct: 118 YNQVGRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALG 158
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 1/148 (0%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+ + + + A+ + + + + A E
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
+ S + Q + +E+ +AANP E L V Y G
Sbjct: 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125
Query: 443 LAIDAYEQCLKIDPD-SRNAGQNRLLAM 469
A++ LK++ + + +
Sbjct: 126 EALELLWNILKVNLGAQDGEVKKTFMDI 153
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 28/135 (20%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
L+ + EA ++Y AL+ +L E +
Sbjct: 21 LFV-QKDYKEAIDAYRDALT-----------------------RLDTLILREKPGEPEWV 56
Query: 185 KIDPHYAPAYYNLGVVYSELMQYDTALG-CYEKAALER-PMYAEAYCNMGVIYKNRGDLE 242
++D P Y N+ Y + A E L+R +A L+
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSE--VLKREETNEKALFRRAKARIAAWKLD 114
Query: 243 SAIACYERCLAVSPN 257
A + L P
Sbjct: 115 EAEEDLKLLLRNHPA 129
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 372 NLDKAVECYQMALSIKPNFSQS------------------LNNLGVVYTVQGKMDAAAEM 413
+ +A++ Y+ AL+ N+ Y G + A E
Sbjct: 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85
Query: 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 466
+ + T +A A + A + + L+ P + + +
Sbjct: 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNF 390
+ F+ A +E+ A G +Y +AV Y +S +
Sbjct: 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304
Query: 391 SQS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438
S+ NL + Y + A E +KA+ + + G
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 439 GSISLAIDAYEQCLKIDPDSRNA 461
A +E+ L+++P ++ A
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGV 199
A ++ + GT G + +Y + + A+ NL +
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
Y +L +Y A+ C +KA + G + ESA +E+ L V+P +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 260 IAKNNMAI 267
A+ +++
Sbjct: 386 AARLQISM 393
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDL 163
+ A G +Y G+ ++A Y K +S ++ K + L +L
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 164 G-TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LKL ++ +AL +D Y G + ++++A G +EK
Sbjct: 324 AMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 165 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
Y + Y G +A+ YE + V P+ + AK
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/105 (20%), Positives = 38/105 (36%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
AI + Y + Y G A+ YE +K+ P ++A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 17/156 (10%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A V + ++ A+ G + L++A++ Y+M
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204
Query: 383 ALSI---KPNFSQS--------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425
A++ F N+ + D A +
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264
Query: 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
+A G + G + A D + + K PD +
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----------------PAYYNL 197
A G SL ++ +Q+Y A+ P + N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+L +YD A+G E +A G G ++SA + + +P+
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 258 FEIAKNNMAIA 268
+ + +
Sbjct: 297 DKAIRRELRAL 307
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
A + + + + + V+ A G E +L EA + Y A+
Sbjct: 147 ADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAI 206
Query: 144 S---------ADPSYKPAAECLAIVL-TDLG-TSLKLAGNTQDGIQKYYEALKIDPHYAP 192
+ Y+ A + ++ +KL + I L +
Sbjct: 207 AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNIVLTEEEKNPK 265
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERP 222
A + G +EL Q D+A + KA P
Sbjct: 266 ALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69
Query: 464 N 464
Sbjct: 70 Q 70
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 34/261 (13%), Positives = 61/261 (23%), Gaps = 43/261 (16%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
+ D F+E D A + + A + + + I +
Sbjct: 25 SLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL------SGSVQISM 78
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
+ L + + G D L I +A G Y A+ E A +
Sbjct: 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG-------NYADAMEALEAAPVA 131
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKTYG 278
+ A+ V+Y I + F A +A +L +
Sbjct: 132 GSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA--LFT 188
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
A + + A + L +A
Sbjct: 189 EAERRLTE-------------ANDSPAGEACA------------RAIAWYLAMARRSQGN 223
Query: 339 FDMAIVFYELAFHFNPHCAEA 359
A+ E +P A
Sbjct: 224 ESAAVALLEWLQTTHPEPKVA 244
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 32/194 (16%)
Query: 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA-------ESY 139
G G+ ++N+ E P C CG L + + + +
Sbjct: 155 GMGVAKILENVE-----VKGEK----PAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDF 205
Query: 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------------- 184
+ D ++ L ++G + + N + I+KY + L
Sbjct: 206 PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG 265
Query: 185 -KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
K+ P N+G ++ + A+ +A P +A ++ + +
Sbjct: 266 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQ 325
Query: 244 AIACYERCLAVSPN 257
A+A ++ ++P
Sbjct: 326 ALADLKKAQEIAPE 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 100.0 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.91 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.9 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.89 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.89 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.87 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.87 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.87 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.84 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.84 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.81 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.81 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.79 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.78 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.77 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.76 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.74 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.72 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.7 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.7 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.7 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.68 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.64 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.62 | |
| 3oy2_A | 413 | Glycosyltransferase B736L; rossmann fold, GDP-mann | 99.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.6 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.59 | |
| 2x6q_A | 416 | Trehalose-synthase TRET; biosynthetic protein; 2.2 | 99.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.57 | |
| 3okp_A | 394 | GDP-mannose-dependent alpha-(1-6)-phosphatidylino | 99.56 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.54 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.53 | |
| 2gek_A | 406 | Phosphatidylinositol mannosyltransferase (PIMA); G | 99.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.49 | |
| 2jjm_A | 394 | Glycosyl transferase, group 1 family protein; anth | 99.49 | |
| 2r60_A | 499 | Glycosyl transferase, group 1; rossmann-fold; 1.80 | 99.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.48 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.46 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.45 | |
| 3fro_A | 439 | GLGA glycogen synthase; glycosyltransferase family | 99.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.44 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.44 | |
| 2iuy_A | 342 | Avigt4, glycosyltransferase; antibiotics, family G | 99.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.43 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.43 | |
| 3c48_A | 438 | Predicted glycosyltransferases; retaining glycosyl | 99.42 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.42 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.41 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.39 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.38 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.32 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.31 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.31 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.3 | |
| 3s28_A | 816 | Sucrose synthase 1; glycosyltransferase, sucrose m | 99.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.3 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.28 | |
| 2bfw_A | 200 | GLGA glycogen synthase; glycosyltransferase family | 99.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.27 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.27 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.25 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 99.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.23 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.2 | |
| 2f9f_A | 177 | First mannosyl transferase (WBAZ-1); alpha-beta pr | 99.19 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.17 | |
| 2qzs_A | 485 | Glycogen synthase; glycosyl-transferase, GT-B fold | 99.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.16 | |
| 1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe | 99.15 | |
| 1rzu_A | 485 | Glycogen synthase 1; glycosyl-transferase, GT-B fo | 99.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.13 | |
| 2iw1_A | 374 | Lipopolysaccharide core biosynthesis protein RFAG; | 99.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.08 | |
| 2xci_A | 374 | KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci | 99.05 | |
| 3vue_A | 536 | GBSS-I, granule-bound starch synthase 1, chloropla | 99.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.9 | |
| 3otg_A | 412 | CALG1; calicheamicin, TDP, structural genomics, PS | 98.9 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.87 | |
| 1uqt_A | 482 | Alpha, alpha-trehalose-phosphate synthase; glycosy | 98.86 | |
| 1vgv_A | 384 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 98.86 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.83 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.8 | |
| 3beo_A | 375 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a | 98.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.77 | |
| 3tsa_A | 391 | SPNG, NDP-rhamnosyltransferase; glycosyltransferas | 98.77 | |
| 2x0d_A | 413 | WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge | 98.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.66 | |
| 4fzr_A | 398 | SSFS6; structural genomics, PSI-biology, protein s | 98.65 | |
| 2hy7_A | 406 | Glucuronosyltransferase GUMK; glycosyltransferases | 98.64 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.63 | |
| 3ia7_A | 402 | CALG4; glycosysltransferase, calicheamicin, enediy | 98.62 | |
| 3t5t_A | 496 | Putative glycosyltransferase; GTB fold, pseudoglyc | 98.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.61 | |
| 3rsc_A | 415 | CALG2; TDP, enediyne, structural genomics, PSI-2, | 98.6 | |
| 3oti_A | 398 | CALG3; calicheamicin, TDP, structural genomics, PS | 98.54 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.54 | |
| 1v4v_A | 376 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t | 98.51 | |
| 3nb0_A | 725 | Glycogen [starch] synthase isoform 2; glycogen syn | 98.51 | |
| 3s2u_A | 365 | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape | 98.45 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.42 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.42 | |
| 2o6l_A | 170 | UDP-glucuronosyltransferase 2B7; drug metabolism, | 98.36 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.3 | |
| 2iyf_A | 430 | OLED, oleandomycin glycosyltransferase; antibiotic | 98.27 | |
| 3dzc_A | 396 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 98.25 | |
| 3ot5_A | 403 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 98.25 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.15 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.15 | |
| 4amg_A | 400 | Snogd; transferase, polyketide biosynthesis, GT1 f | 98.12 | |
| 2p6p_A | 384 | Glycosyl transferase; X-RAY-diffraction,urdamycina | 98.09 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.03 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.02 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.97 | |
| 4hwg_A | 385 | UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc | 97.91 | |
| 2iya_A | 424 | OLEI, oleandomycin glycosyltransferase; carbohydra | 97.91 | |
| 2yjn_A | 441 | ERYCIII, glycosyltransferase; transferase, cytochr | 97.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.78 | |
| 1iir_A | 415 | Glycosyltransferase GTFB; rossmann fold; 1.80A {Am | 97.75 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.61 | |
| 3rhz_A | 339 | GTF3, nucleotide sugar synthetase-like protein; gl | 97.53 | |
| 2pq6_A | 482 | UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl | 97.52 | |
| 1rrv_A | 416 | Glycosyltransferase GTFD; GT-B, glycosyltransferas | 97.5 | |
| 2c1x_A | 456 | UDP-glucose flavonoid 3-O glycosyltransferase; WIN | 97.45 | |
| 3hbf_A | 454 | Flavonoid 3-O-glucosyltransferase; glycosyltransfe | 97.43 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.41 | |
| 3h4t_A | 404 | Glycosyltransferase GTFA, glycosyltransferase; van | 97.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.21 | |
| 2acv_A | 463 | Triterpene UDP-glucosyl transferase UGT71G1; glyco | 97.2 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.13 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.79 | |
| 2vch_A | 480 | Hydroquinone glucosyltransferase; glycosyltransfer | 96.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.6 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.94 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.51 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.5 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.4 | |
| 1psw_A | 348 | ADP-heptose LPS heptosyltransferase II; structural | 95.39 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.5 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.15 | |
| 3tov_A | 349 | Glycosyl transferase family 9; structural genomics | 93.81 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.71 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.68 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.56 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.51 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.39 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.24 | |
| 2gt1_A | 326 | Lipopolysaccharide heptosyltransferase-1; GT-B fol | 92.57 | |
| 3hbm_A | 282 | UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je | 92.18 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.97 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.76 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 91.37 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 91.17 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 91.13 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 90.72 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.28 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.06 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.37 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 87.36 | |
| 2gj4_A | 824 | Glycogen phosphorylase, muscle form; transferase; | 87.05 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.77 | |
| 2jzc_A | 224 | UDP-N-acetylglucosamine transferase subunit ALG13; | 84.96 |
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-117 Score=1064.50 Aligned_cols=588 Identities=28% Similarity=0.417 Sum_probs=517.6
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 254 VSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333 (944)
Q Consensus 254 ~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 333 (944)
..|++..++.++|.++... |++++|+..|+++++.+|++..++.++|.+|
T Consensus 4 s~P~~a~al~nLG~~~~~~------------------------------G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l 53 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ------------------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL 53 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHc------------------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3577888888888876654 5669999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 413 (944)
..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++..+++++|.+|..+|++++|++.
T Consensus 54 ~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 54 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh----hHHHHhhhccCCChHHHHHHHHHHHH
Q 002273 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ----NRLLAMNYINEGHDDKLFEAHRDWGK 489 (944)
Q Consensus 414 l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (944)
|+++++++|+++.++.++|.+|..+|++++|.+.|++++++.|+...... .....+.+.. .........+++..
T Consensus 134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~aia~r~~~ 211 (723)
T 4gyw_A 134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPL--SHGFRKAIAERHGN 211 (723)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhccCcccchhhhhhhhc--CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886543211 0001111111 11111111222222
Q ss_pred HHhh----h-ccCCCCCCCCCCCCCCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEecccc-CChhhHHHHHHH
Q 002273 490 RFMR----L-YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKV 563 (944)
Q Consensus 490 ~~~~----~-~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~-~d~~t~~~~~~~ 563 (944)
.... . .++...+...+.+++||||||+|+||++|||++|+.+++++||+++|||++|+.++. .|..+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~-- 289 (723)
T 4gyw_A 212 LCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMA-- 289 (723)
T ss_dssp HHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHH--
T ss_pred hhhhhhhcccCccccCccccccccccceeeeechhhccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHH--
Confidence 2211 1 112222334455688999999999999999999999999999999999999998754 3445555444
Q ss_pred hhhCCceEeccCC-CHHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCC
Q 002273 564 MKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADP 642 (944)
Q Consensus 564 ~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p 642 (944)
.+++|+++.++ +|.+++++|++|+|||||||+|||.++|+.||++|||||||+|||||+|||+++|||+|+|.+++|
T Consensus 290 --~~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P 367 (723)
T 4gyw_A 290 --EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSP 367 (723)
T ss_dssp --HSSEEEEGGGCCCHHHHHHHHHHTTCSEEEESCSSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSC
T ss_pred --hhccccccccCCcHHHHHHHHHhccceeEEeccCCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCC
Confidence 45899999998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEcCCCccccCCCCCCC----------------------------------------------------
Q 002273 643 PETKQKHVEELIRLPECFLCYTPSPEAG---------------------------------------------------- 670 (944)
Q Consensus 643 ~~~~~~~~e~~~~lp~~~~~~~~~~~~~---------------------------------------------------- 670 (944)
++.+.+|||||+|||++|+|++|+...|
T Consensus 368 ~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 447 (723)
T 4gyw_A 368 AEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNA 447 (723)
T ss_dssp GGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEEECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC----------
T ss_pred chhhhcceeeeeeCCCccccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999986421100
Q ss_pred ----------------------------------------------------------------CCCCCCCCCCCCeEEE
Q 002273 671 ----------------------------------------------------------------PVCPTPALTNGFITFG 686 (944)
Q Consensus 671 ----------------------------------------------------------------~~~~~~~~~~~~~~f~ 686 (944)
+.+..++|++|.||||
T Consensus 448 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~ 527 (723)
T 4gyw_A 448 DSSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYC 527 (723)
T ss_dssp -------CEEEECSSHHHHHHHHHHHHTCCEEEETTEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcCCCCCCEEEE
Confidence 0123457999999999
Q ss_pred ecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEE
Q 002273 687 SFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS 766 (944)
Q Consensus 687 ~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~ 766 (944)
|||+++||+|+++++|++||++||||+|||+..+. ..+.++++.++++||+++||+|.+..+ ..+|+++|+.+||+
T Consensus 528 ~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~---~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~~~l~~~~~~Di~ 603 (723)
T 4gyw_A 528 NFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA---VGEPNIQQYAQNMGLPQNRIIFSPVAP-KEEHVRRGQLADVC 603 (723)
T ss_dssp CCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG---GGHHHHHHHHHHTTCCGGGEEEEECCC-HHHHHHHGGGCSEE
T ss_pred eCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH---HHHHHHHHHHHhcCCCcCeEEECCCCC-HHHHHHHhCCCeEE
Confidence 99999999999999999999999999999987553 457889999999999999999999987 79999999999999
Q ss_pred ecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 767 LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 767 Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
||||||||||||+|||||||||||++|++|+||||+|||+++||+||||.|+++||++|++|++|++.|+++|++||+++
T Consensus 604 LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~ 683 (723)
T 4gyw_A 604 LDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQR 683 (723)
T ss_dssp ECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCch
Q 002273 847 SKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLK 881 (944)
Q Consensus 847 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 881 (944)
.+|||||.++|+++||++|++||+|||+|++|.+.
T Consensus 684 ~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 684 ISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp HHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred HhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999875
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-82 Score=717.51 Aligned_cols=396 Identities=15% Similarity=0.166 Sum_probs=334.9
Q ss_pred hhHHHHhhhccCCChHHHHHHHHHHHHHHh-hh--ccCCCCCCCCCCCCCCcEEEeecCCCccCcHHHHHHhhhhhccCC
Q 002273 463 QNRLLAMNYINEGHDDKLFEAHRDWGKRFM-RL--YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ 539 (944)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~ 539 (944)
.+-.+..+|...-+.-+.-....++..+.. .. ....+....++.++++++|||+|.+|++|||+.++.+++.+ ||+
T Consensus 225 ~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~ 303 (631)
T 3q3e_A 225 HDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-ARE 303 (631)
T ss_dssp HHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTT
T ss_pred cceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhh
Confidence 344555677655544444333333333322 11 11111112233457889999999999999999999999887 999
Q ss_pred cEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCC----HHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcce
Q 002273 540 NYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 615 (944)
Q Consensus 540 ~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~----~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apv 615 (944)
+|||+||+ +...|+.| | ..+++|+++.+++ +++++++|++|+|||||||+|||.+.++.++++|||||
T Consensus 304 ~FEV~~Ys-~~~~D~~t---r----~~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPV 375 (631)
T 3q3e_A 304 HFYLIGLG-SPSVDQAG---Q----EVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPI 375 (631)
T ss_dssp TSEEEEEE-CTTSCHHH---H----TTSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSE
T ss_pred cEEEEEEe-CCCCCHHH---H----hcCcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchh
Confidence 99999999 77778766 2 2358999999999 78999999999999999999999777777777999999
Q ss_pred eeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCCCCCCCCCCC-CCCeEEEecCCCCcC
Q 002273 616 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT-NGFITFGSFNNLAKI 694 (944)
Q Consensus 616 Q~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~K~ 694 (944)
||+|||||+|||+++|||+|+|+.+.| .+.+|+|+|+|||++++||+|+...|.+.+.+... +|+|||||||+++|+
T Consensus 376 Qvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~Ki 453 (631)
T 3q3e_A 376 QAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKL 453 (631)
T ss_dssp EEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEECSTTC
T ss_pred eEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccCCcccCCccccccCCcCCCeEEEEECCccccC
Confidence 999999999999999999999997765 58899999999999999999988766554444344 479999999999999
Q ss_pred CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCC
Q 002273 695 TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG 774 (944)
Q Consensus 695 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~ 774 (944)
+|+++++|++||+++|+++||++..+. .+....++.+++.++||+ +||+|.|.++ ..+|+++|+.+||+||||||+|
T Consensus 454 ~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~~~~~~~GI~-~Rv~F~g~~p-~~e~la~y~~aDIfLDpfpy~G 530 (631)
T 3q3e_A 454 NPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYVERFIKSYLG-DSATAHPHSP-YHQYLRILHNCDMMVNPFPFGN 530 (631)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHHHHHHHHHHG-GGEEEECCCC-HHHHHHHHHTCSEEECCSSSCC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEecCC-CchhhHHHHHHHHHcCCC-ccEEEcCCCC-HHHHHHHHhcCcEEEeCCcccC
Confidence 999999999999999999998642111 123445566678889997 8999999988 7999999999999999999999
Q ss_pred cccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc-ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCC
Q 002273 775 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCD 853 (944)
Q Consensus 775 ~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~-v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~ 853 (944)
|||++|||||||||||++|+++++|+|+|+|+++|++|| |+.|+++|+++|++|++|++.|+++|+++|+++.++|+||
T Consensus 531 gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd 610 (631)
T 3q3e_A 531 TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT 610 (631)
T ss_dssp SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC
T ss_pred ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc
Confidence 999999999999999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 002273 854 GQNFALGLESTYRNMWHRYCK 874 (944)
Q Consensus 854 ~~~~~~~~e~~~~~~~~~~~~ 874 (944)
++++.+|+.|+++|++|..
T Consensus 611 --~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 611 --GDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp --SCCTHHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHh
Confidence 8999999999999999986
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-64 Score=596.99 Aligned_cols=552 Identities=21% Similarity=0.255 Sum_probs=471.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~---g~~~eA~~~~~~al~l~P~~ 458 (944)
++++.+|++..++.++|.++...|++++|++.|+++++.+|++..++.++|.++... |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhhhhHHHHhhhccCCChHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCCCcEEEeecCCCccCcHHHHHHhhhhh--
Q 002273 459 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 535 (944)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~~~~~~l~~-- 535 (944)
...+..+. ..+........+.|..+. .....+. ...+..+++++||||++++|..|++..++..++.+
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 77654321 333444444444554433 2221211 12333457899999999999999999999999999
Q ss_pred ccCCcEEEEEEecccc-CChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcc
Q 002273 536 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 614 (944)
Q Consensus 536 ~d~~~fev~~y~~~~~-~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Ap 614 (944)
+++.+|||++|+..+. .+..+.+++. .. .|+++.+++..++++.|+++++||+++.+|||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQ----AS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHH----TS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHh----cC-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999998643 3455555443 23 6888888889999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCC-----CCCCCCCCCCCCeEEEecC
Q 002273 615 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG-----PVCPTPALTNGFITFGSFN 689 (944)
Q Consensus 615 vQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~~~~ 689 (944)
+|++|+|||.|+|++.+||+++|.++.|.+....|.|++..+|+ +|.|.+..+ +.+...+++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn---~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQG---AFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSS---CSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCC---cCCCCCCCCCCCCCCCccccCCCCCCEEEEeCC
Confidence 99999999999999999999999999998888889999999998 455543222 2233345778888888888
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCceEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEec
Q 002273 690 NLAKITPKVLQVWARILCAVPNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 768 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld 768 (944)
...|..+.++++|.+|++..|+.+|+|+| .+ ..++.+++.++++|++++||+|+|.++ ..++...|+.+||+|+
T Consensus 385 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g----~~~~~l~~~~~~~~l~~~~v~~~g~~~-~~~~~~~~~~adv~v~ 459 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLREVPDSVLWLLSGPG----EADARLRAFAHAQGVDAQRLVFMPKLP-HPQYLARYRHADLFLD 459 (568)
T ss_dssp CGGGCCHHHHHHHHHHHHHCTTCEEEEECCST----THHHHHHHHHHHTTCCGGGEEEECCCC-HHHHHHHGGGCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHcCCChhHEEeeCCCC-HHHHHHHHhcCCEEee
Confidence 66799999999999999999999999998 44 578899999999999669999999987 5789999999999999
Q ss_pred CCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 002273 769 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSK 848 (944)
Q Consensus 769 ~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~ 848 (944)
|+++++|+|++|||+||+|||+++|..+.+++|++++..+|++|+|.+|+++|++.+.+|++|++.+.++++..|+++..
T Consensus 460 ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 539 (568)
T 2vsy_A 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568)
T ss_dssp CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002273 849 SPVCDGQNFALGLESTYRNMWHRYCKG 875 (944)
Q Consensus 849 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ 875 (944)
...|+++.+++.++++|+++|++||..
T Consensus 540 ~~~f~~~~~~~~~~~~y~~~~~~~~~~ 566 (568)
T 2vsy_A 540 SGVFHMDGFADDFGALLQALARRHGWL 566 (568)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999973
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.78 Aligned_cols=380 Identities=27% Similarity=0.376 Sum_probs=365.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (944)
+.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (944)
+++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998765 7788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCC
Q 002273 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291 (944)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~ 291 (944)
+.|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------- 216 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA------------------- 216 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-------------------
Confidence 9999999999999999999999999999999999999999999999999999888877654
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 292 ~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 217 -----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 217 -----------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp -----------TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred -----------CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 455999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
++++|++.|+++++..|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChhhhhhHHHH
Q 002273 452 LKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 452 l~l~P~~~~a~~~~~~~ 468 (944)
++++|++..++.++...
T Consensus 366 ~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNT 382 (388)
T ss_dssp HTTCTTCHHHHHHHHHH
T ss_pred HhhCCCCHHHHHhHHHH
Confidence 99999999988876443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=350.67 Aligned_cols=360 Identities=26% Similarity=0.383 Sum_probs=346.8
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.|.+...+..++.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 108 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
.++...|++++|+..|+++++.+|+.... +..+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 67788888899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++...+..++.++...
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------- 250 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ----------- 250 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999888876654
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 251 -------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 251 -------------------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp -------------------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 5669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++++|++..+++++|.++..+|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=348.63 Aligned_cols=387 Identities=17% Similarity=0.119 Sum_probs=357.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHH--------------------------------------------------
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECL-------------------------------------------------- 156 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------------------- 156 (944)
..+|++++|+..|+++++..|.+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999988543321110
Q ss_pred ----------------------HHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----h--C-------CCCHHHHHHH
Q 002273 157 ----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYNL 197 (944)
Q Consensus 157 ----------------------a~~~~~lg~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~l 197 (944)
...+..+|..+.. .|++++|+..|+++++ . + |.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 4455666776665 8999999999999999 5 3 4456789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 277 (944)
|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|++...+..++.++...+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ---- 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT----
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999 9999999999999999999999999999999999998888888776654
Q ss_pred hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 357 (944)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (944)
++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+++
T Consensus 319 --------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 319 --------------------------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp --------------------------CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred --------------------------CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 559999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
.++..+|.++...|++++|+.+|+++++..|++.. ++..+|.++.. .|++++|+..++++++.+|++..++
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 99999999999999999999999999999888755 99999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
..+|.++...|++++|+..|+++++++|+++.+...+
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999999998887654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=341.24 Aligned_cols=418 Identities=14% Similarity=0.073 Sum_probs=336.3
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---------------
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------- 110 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------- 110 (944)
.+...+..++..+.+.|++++|+.+|++++...|++ ..++.++.++...|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 356677788888888888888888888888777743 5556677777777777777666666522
Q ss_pred ---------------cCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 111 ---------------LDPQN-------------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 111 ---------------~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
..|.. ..+++.+|.+|.+.|++++|+..|+++++.+|++...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 23443 67889999999999999999999999999999887765544
Q ss_pred HHH-------------------------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 157 AIV-------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 157 a~~-------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
+.+ +..++..+...|++++|++.|+++++. |.+..++..++.+|...|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhc
Confidence 321 122244455677788888888887776 667788888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
++++|++.|+++++.+|.+..++..++.++...|++++|+..++++++..|++...+..++.++...|+...+.......
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877765554443332
Q ss_pred hc-CCC---CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 286 LN-GSN---FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 286 ~~-~~~---~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (944)
.. .+. ....++..+...|++++|++.|+++++..|.+..++..++.+|...|++++|++.|+++++..|.++.++.
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 479 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN 479 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 11 111 12245566777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
.+|.++...|++++|++.|+++++. +|+. ..++..+|.++...|++++|++.++++++.+|+++.++..+|.+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999988 5654 78999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|...|++++|+++|+++++++|++..++..+
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999999999999999998877653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=341.84 Aligned_cols=386 Identities=16% Similarity=0.159 Sum_probs=339.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhH---------------------------------------------------
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAEC--------------------------------------------------- 155 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------------------------------------------------- 155 (944)
...|++++|+..|+ ++...|+.......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999995 77777764432100
Q ss_pred -------------HHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 002273 156 -------------LAIVLTDL-----GTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDTA 210 (944)
Q Consensus 156 -------------la~~~~~l-----g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A 210 (944)
+...+..+ +......+++++|+..|+++++.+|++.. ++..+|.++...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 01111111 33334456899999999999999999855 577888999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~ 290 (944)
+..|+++++.+|. ..++..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 323 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL------------------ 323 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc------------------
Confidence 9999999999999 999999999999999999999999999999999999998888887654
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 324 ------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 324 ------------QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp ------------TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 56699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQ------SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
|++++|+..|+++++..|++.. .+..+|.++... |++++|+.+|+++++.+|++..++..+|.+
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998776543 467778999999 999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|...|++++|+++|+++++++|++......
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999998876543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=337.37 Aligned_cols=402 Identities=16% Similarity=0.050 Sum_probs=349.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH----
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC---- 155 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---- 155 (944)
.+...+..++..+...|++++|+..|++++...|+. ..++.++.++...|++++|+..|++++.. |.+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467889999999999999999999999999998854 67788999999999999999998887543 222222111
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 156 ---------------------------------------LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (944)
Q Consensus 156 ---------------------------------------la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (944)
.+.++..+|.++...|++++|+..|+++++.+|++..++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 24567888999999999999999999999999999988777
Q ss_pred HHH--------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 197 LGV--------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (944)
Q Consensus 197 la~--------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (944)
++. .|.+.|++++|++.|+++++. |.+..++..++.++...
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh
Confidence 754 344678999999999999887 77899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC-CC---CCchhHHHhhhcCCHHHHHHHHHH
Q 002273 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG-SN---FQSPFFELVKLEGDINQGVAYYKK 314 (944)
Q Consensus 239 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~-~~---~~~~~~~l~~~~~~~~~A~~~~~~ 314 (944)
|++++|+..|+++++..|++...+..++.++...|+...+.......... +. ....++..+...|++++|++.|++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999886665554433221 11 222456788999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 002273 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394 (944)
Q Consensus 315 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 394 (944)
+++..|.+..++..++.+|...|++++|++.|+++++..|++..++..+|.+|...|++++|+++|+++++..|.++.++
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 395 NNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~l~~al~~------~p~~-~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
..+|.++...|++++|++.|+++++. +|+. ..++..+|.+|...|++++|++.|+++++++|++..++.. +
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l 556 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA--I 556 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH--H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH--H
Confidence 99999999999999999999999998 6664 7899999999999999999999999999999999887766 4
Q ss_pred HhhhccCCChHHHHHHHHH
Q 002273 468 AMNYINEGHDDKLFEAHRD 486 (944)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (944)
+..|...|+.+++.+..++
T Consensus 557 ~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5567778888776655543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=319.96 Aligned_cols=365 Identities=17% Similarity=0.202 Sum_probs=277.3
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...|.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCh---hHHhHHHHH-----HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (944)
+|.++...|++++|+..|+++++.+|++. ..+..++.+ +..+|..+...|++++|+..|+++++..|.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999987 666655544 6677889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
+..+|.+|...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++...|++...+..+..+..
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~--- 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK--- 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999998877665533211
Q ss_pred hhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 353 (944)
......+|.++...|++++|+..|+++++..
T Consensus 257 -------------------------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 257 -------------------------------------------------LNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122334444444555555555555555554
Q ss_pred CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 354 PHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 354 p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
|+++ ..+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 4442 244444555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHH------------HHHHcC-----CHHHHHHHHHH-HHhhCCCC
Q 002273 430 NLGV------------LYRDAG-----SISLAIDAYEQ-CLKIDPDS 458 (944)
Q Consensus 430 ~la~------------~~~~~g-----~~~eA~~~~~~-al~l~P~~ 458 (944)
.++. .|..+| +.+++.+.|++ +++..|++
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 4442 233333 44455555554 55555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=317.01 Aligned_cols=344 Identities=15% Similarity=0.116 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (944)
...+...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCCHH
Q 002273 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNL------------GVVYSELMQYD 208 (944)
Q Consensus 144 ~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~ 208 (944)
+.+|++..+ +..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|+++
T Consensus 88 ~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 88 QLKMDFTAA-------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hcCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999998654 77888899999999999999999999999988 776655 66799999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+..|+++++..|.+..++..+|.+|...|++++|+..|+++++.+|++..++..++.++...
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------- 224 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL---------------- 224 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------
Confidence 9999999999999999999999999999999999999999999999999999999888887654
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 368 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (944)
|++++|+..|++++...|++...+..++.+.. ......+|.++.
T Consensus 225 --------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 268 (450)
T 2y4t_A 225 --------------GDHELSLSEVRECLKLDQDHKRCFAHYKQVKK----------------------LNKLIESAEELI 268 (450)
T ss_dssp --------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 56699999999999999999887776654311 234566799999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 369 DRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
..|++++|+.+|+++++..|+++. .+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|
T Consensus 269 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999854 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhhhhhHH
Q 002273 445 IDAYEQCLKIDPDSRNAGQNRL 466 (944)
Q Consensus 445 ~~~~~~al~l~P~~~~a~~~~~ 466 (944)
+..|+++++++|++..++..+.
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999998876654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=296.86 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=290.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC---CChhHHhHHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADP---SYKPAAECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
...|++++|+..|+++++..| ++...+..++. .+..+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 77666554432 2345578888899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------- 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------- 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999888876544332211
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (944)
.......+|.++...|++++|+..++++++..|++..
T Consensus 233 -------------------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 233 -------------------------------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 1233455677788888888888888888888887763
Q ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 359 ----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 359 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4556788888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHcC
Q 002273 435 YRDAG 439 (944)
Q Consensus 435 ~~~~g 439 (944)
+...+
T Consensus 350 ~~~~~ 354 (359)
T 3ieg_A 350 QRLLK 354 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=308.91 Aligned_cols=393 Identities=14% Similarity=0.051 Sum_probs=308.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEK---------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------ 111 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 111 (944)
.+..+..+|.++..+|++++|++.|+++++. +|.....+..+|.+|..+|++++|+.++++++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566778999999999999999999999885 5677889999999999999999999999999986
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 112 --DPQNACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (944)
Q Consensus 112 --~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (944)
.+..+.++..+|.++... +++++|+.+|+++++++|+++..+..++.++.. +...++.++|++.|+++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~----l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR----LDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCchHHHHHHHHHHHHhhcC
Confidence 345678888888777664 579999999999999999998876555544433 335688899999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002273 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (944)
Q Consensus 188 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 263 (944)
|++..++..+|..+.. .+++++|++++++++..+|....++..+|.+|...|++++|+..|+++++..|++..++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999877665 467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002273 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343 (944)
Q Consensus 264 ~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 343 (944)
.++.++...+....... ...........+.+++|+..++++++.+|....++..+|.++...|++++|+
T Consensus 286 ~lg~~y~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR-----------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 99988865443211000 0001111222345689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHH---HHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 344 VFYELAFHFNPHCAE---ACNNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419 (944)
Q Consensus 344 ~~~~~al~~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 419 (944)
.+|++++++++++.. ++..+|.++ ...|++++|+..|++++++.|++...... ...+...++++++
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHH
Confidence 999999999887643 456677654 57899999999999999999998654322 3455678889999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 420 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 420 ~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.+|+++.++.+||.+|...|++++|+++|++|+++.|.++.+...
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999999999999999999999999887653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=309.12 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=331.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----------
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----------- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 115 (944)
++..++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 002273 116 --------------------------------------------------------------------ACAHTHCGILYK 127 (944)
Q Consensus 116 --------------------------------------------------------------------~~~~~~la~~~~ 127 (944)
..++..+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777888877
Q ss_pred H---cCCHHHHHHHHHHHHH-----c--CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 128 D---EGRLVEAAESYHKALS-----A--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (944)
Q Consensus 128 ~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (944)
. .|++++|+..|+++++ . .|++.......+.++..+|.++...|++++|+..|+++++.+|. ..++..+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l 276 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYM 276 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHH
Confidence 6 8999999999999999 6 77776555566778999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 277 (944)
|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++.
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------- 349 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY------- 349 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-------
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999888888777654
Q ss_pred hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 357 (944)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (944)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++.
T Consensus 350 -----------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 350 -----------------------RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp -----------------------TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred -----------------------HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 456779999999999999999999999999999999999999999999999988875
Q ss_pred H------HHHHHHHHHHH---CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 358 E------ACNNLGVIYKD---RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 358 ~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
. ++..+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 4 99999999999 99999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 002273 429 NNLG 432 (944)
Q Consensus 429 ~~la 432 (944)
..+.
T Consensus 487 ~~~~ 490 (514)
T 2gw1_A 487 QAIT 490 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-30 Score=285.29 Aligned_cols=326 Identities=15% Similarity=0.168 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (944)
+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++... +
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------R 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------H
Confidence 467888899999999999999999999999999999999999999999999999999999999888887653 7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..+|.++...|++++|+..|+++++.+| ++..++..++.++. ...+..+|.++..
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 7888888888999999999999888888 77777777743322 1123334555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
.|++++|+..++++++..|++...+..++.++... |++++|+..++++++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKE------------------------------GEPRKAISDLKAASK 182 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444332 333555555666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 318 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN------------NLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 318 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
..|.++.++..+|.++...|++++|+..++++++..|++..++. .+|.++...|++++|+..++++++
T Consensus 183 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666777777777777777777777776655443 458889999999999999999999
Q ss_pred hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 386 IKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 386 ~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
..|+++. ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+
T Consensus 263 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 9999874 467799999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhH
Q 002273 462 GQNR 465 (944)
Q Consensus 462 ~~~~ 465 (944)
+..+
T Consensus 343 ~~~l 346 (359)
T 3ieg_A 343 REGL 346 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=305.87 Aligned_cols=353 Identities=17% Similarity=0.165 Sum_probs=314.1
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH------
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA------ 118 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 118 (944)
|.++..++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+ ++..+|+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999995 77766654322
Q ss_pred --------------------------------------------------------------HHHHH--------HHHHH
Q 002273 119 --------------------------------------------------------------HTHCG--------ILYKD 128 (944)
Q Consensus 119 --------------------------------------------------------------~~~la--------~~~~~ 128 (944)
...++ .....
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11111 12223
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (944)
.|++++|+..|+++++.+|++...+..++.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 3589999999999999999999998899999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.++...
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------------- 357 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ---------------- 357 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------
Confidence 9999999999999999999999999999999999999999999999999999988888876654
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------HHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNN 362 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~ 362 (944)
|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|++. ..+..
T Consensus 358 --------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 358 --------------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp --------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 5669999999999999999999999999999999999999999999999876553 34667
Q ss_pred HHHHHHHC----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 363 LGVIYKDR----------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 363 la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
+|.++... |++++|+..|+++++.+|++..++..+|.++...|++++|+++|++++++.|+..+...
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78899998 99999999999999999999999999999999999999999999999999999887654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=267.77 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
.++++..+..+|..++..|++++|+..|+++++.+|.+... +..++.++...|++++|+..++++++.+|+++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC-------LPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34444455555555555555555555555555555554433 23333344444555555555555555555555
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 192 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.++..+|.++...| ++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 55555555555555 55555555555555555555555555555555555555555555555555444333333332222
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
. .|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++
T Consensus 171 ~------------------------------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 171 L------------------------------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp H------------------------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H------------------------------HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 1222333333333333333344444445555555555555555555555
Q ss_pred hhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 351 HFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 351 ~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 421 (944)
+.. |....++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 443 33344555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHH
Q 002273 422 PTYAEAYNNLGVLY 435 (944)
Q Consensus 422 p~~~~a~~~la~~~ 435 (944)
|++..++..++.++
T Consensus 301 p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 RDDTFSVTMLGHCI 314 (330)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 55555555555554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=267.04 Aligned_cols=305 Identities=19% Similarity=0.183 Sum_probs=261.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...+.+...++.+|..++..|++++|+.+|+++++.+|.+...+..++.++...|++++|+..++++++.+|+++.++..
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34456677888889999999999999999999999999888888888889999999999999999999999998889999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 122 CGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 122 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
+|.++...| ++++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++..|++..++..+|.+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999998 8899999999999888887654 77888888888999999999998888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..+.....
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------- 229 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE------------------- 229 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-------------------
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-------------------
Confidence 8888889899998888888888888888888888888888888888888887765432100
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
...|....++..+|.++...|++++|+..++++++.+|++..++
T Consensus 230 ------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 230 ------------------------------------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp ------------------------------------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ------------------------------------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHH
Confidence 00145578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHH
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY-TVQGKMD 408 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 408 (944)
..+|.++...|++++|+++|+++++++|+++.++..++.++ ...|+.+
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999998 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=273.16 Aligned_cols=311 Identities=16% Similarity=0.149 Sum_probs=243.1
Q ss_pred HHHcCCHHHHHH-HHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 126 YKDEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 126 ~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
+...|++++|+. .|++++...|+++.. .+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 444567777777 777777776665421 0123566777777778888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|++...+..++......
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 179 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA------------ 179 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhh------------
Confidence 88888888888888888888888888888888888888888888888888877665543221110000
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
........+..++ ..|++++|+..++++++..|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 180 --~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 256 (368)
T 1fch_A 180 --GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 0000011122223 677889999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHH
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNL 431 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----------~~a~~~l 431 (944)
+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l 454 (944)
|.++..+|++++|..+++++++.
T Consensus 337 ~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999887765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-26 Score=262.85 Aligned_cols=367 Identities=18% Similarity=0.139 Sum_probs=326.5
Q ss_pred CCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCH
Q 002273 45 GFEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNA 116 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 116 (944)
+.+++.++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4578999999999999 99999999999999986 689999999999999 99999999999999875 588
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 002273 117 CAHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 117 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 188 (944)
.+++.+|.+|.. .+++++|+.+|+++.+.. +.. ++..+|.+|.. .+++++|+.+|+++++.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~-------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDS-------GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH-------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 999999999999 899999999999998763 433 47778888887 88999999999999986
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHH
Q 002273 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 256 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSI 256 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 579999999999999 99999999999999876 568999999999997 89999999999999875 5677
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 002273 261 AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---- 336 (944)
Q Consensus 261 ~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 336 (944)
+...++.++..-. ...+++++|+.+|+++.+. .++.+++.+|.+|...
T Consensus 257 a~~~lg~~y~~g~--------------------------~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 257 AQFRLGYILEQGL--------------------------AGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp HHHHHHHHHHHTT--------------------------TSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHHHCCC--------------------------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Confidence 7888887765411 1257889999999999865 6789999999999998
Q ss_pred -CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 002273 337 -LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMD 408 (944)
Q Consensus 337 -g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 408 (944)
+++++|+..|+++++. .++.+++.+|.+|...| ++++|+++|+++++. .++.+++++|.+|.. .++++
T Consensus 309 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 9999999999999986 46789999999999877 899999999999987 679999999999999 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---Chhhhhh
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 464 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~---~~~a~~~ 464 (944)
+|+.+|+++++.. ++.++++||.+|.. .+++++|+.+|+++++..|+ ++.+..+
T Consensus 385 ~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 385 QAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 9999999999864 68999999999999 89999999999999999965 5555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=276.31 Aligned_cols=363 Identities=13% Similarity=0.033 Sum_probs=295.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
.+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4677889999999999999999999999876 5677888999999999999999999999999987443211
Q ss_pred H-HhHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH
Q 002273 152 A-AECLAIVLTDLGTSLKLA--GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---LMQYDTALGCYEKAALERPMYA 225 (944)
Q Consensus 152 ~-~~~la~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~ 225 (944)
. ....+.++..+|..+... +++++|+.+|+++++++|+++.++..++.++.. .+++++|++.|+++++++|.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 011234566667666554 579999999999999999999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhh
Q 002273 226 EAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL 301 (944)
Q Consensus 226 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 301 (944)
.++..+|..+.. .+++++|+.++++++..+|++..++..++.++...
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~----------------------------- 260 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK----------------------------- 260 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc-----------------------------
Confidence 999998877665 46788999999999999999999999988887664
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-------------------LKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
|++++|+..++++++.+|+++.++..+|.+|... +.+++|+..++++++.+|.+..++..
T Consensus 261 -~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 339 (472)
T 4g1t_A 261 -DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339 (472)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHH
T ss_pred -CchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhh
Confidence 4569999999999999999999999999988653 34678999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
+|.++...|++++|+.+|++++++.+++.. ++..+|.++ ...|++++|+..|++++++.|++......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 999999999999999999999999887654 456677654 57899999999999999999997654322
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 002273 439 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 485 (944)
...+.+.++++++.+|+++.++.++ +..|...|+.+++.+.++
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~L--G~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVL--AFLQELNEKMQQADEDSE 454 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHH--HHHHHHHHHCC-------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 3456678899999999999988774 455555566665554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=269.70 Aligned_cols=313 Identities=16% Similarity=0.171 Sum_probs=242.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHH
Q 002273 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD-SFSEAVKLDPQNA----CAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 134 (944)
..+.|..+...++.+....|. ++...|++++|+. .|+++++..|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 334455555555555444432 4455678888888 8888888777664 457888888888888888
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+
T Consensus 83 A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEA-------WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp HHHHHHHHHHSCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888887654 6677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhh
Q 002273 215 EKAALERPMYAEAYC----------------NMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKT 276 (944)
Q Consensus 215 ~~al~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~ 276 (944)
+++++..|.+...+. .++.++ ..|++++|+..|+++++..|+ +...+..++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----- 229 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----- 229 (368)
T ss_dssp HHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-----
T ss_pred HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-----
Confidence 888888887665554 456666 889999999999999999998 77777777777655
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (944)
.|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 230 -------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 230 -------------------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -------------------------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
..++..+|.++...|++++|+..|++++++.|++ ..++..+|.++..+|++++|..+++++++.
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999999999999999999998888 899999999999999999999998877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=261.70 Aligned_cols=291 Identities=20% Similarity=0.157 Sum_probs=247.0
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (944)
..+.+.+...+.++.. -+..++.+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++
T Consensus 48 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK---DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -----CCCCCSSCTTT---TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555554422 1223778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
+++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..+ +.++..+
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l--------------------- 183 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM--------------------- 183 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------------------
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH---------------------
Confidence 9999999999999999999999999999999999999999877666554 1122222
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
...+...|++++|+..|+++++..|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 184 --~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 184 --SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred --HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 22356677789999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcC
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAG 439 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------------~~~a~~~la~~~~~~g 439 (944)
++++|+..|+++++++|+++.++.++|.++...|++++|+.+|++++++.|+ ...++..++.++..+|
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999876 3678999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 002273 440 SISLAIDAYEQCLK 453 (944)
Q Consensus 440 ~~~eA~~~~~~al~ 453 (944)
+.+.|....++.+.
T Consensus 342 ~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 342 QPELFQAANLGDLD 355 (365)
T ss_dssp CHHHHHHHHTTCCG
T ss_pred cHHHHHHHHHhhHH
Confidence 99988887766443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-24 Score=249.39 Aligned_cols=370 Identities=16% Similarity=0.089 Sum_probs=320.9
Q ss_pred CChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHH
Q 002273 46 FEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNAC 117 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 117 (944)
.++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 367889999999999 99999999999999875 589999999999999 89999999999999875 5789
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 002273 118 AHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 118 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 189 (944)
+++.+|.+|.. .+++++|+.+|+++.+.. +.. ++..+|.++.. .+++++|+.+|+++.+. .
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~-------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--NVW-------SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--G 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH-------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C
Confidence 99999999998 899999999999999863 333 47788888888 89999999999999875 5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 190 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. ++..+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 68999999999997 89999999999999875 568899999999999 99999999999999865 56778
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---C
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---K 338 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~ 338 (944)
...++.++..... ...+++++|+.+|+++++. .++.+++.+|.+|...| +
T Consensus 294 ~~~Lg~~y~~~~~-------------------------g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 294 QYYLAHLYDKGAE-------------------------GVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp HHHHHHHHHHCBT-------------------------TBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHcCCC-------------------------CCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCccc
Confidence 8888887765310 1137889999999999986 56789999999999877 8
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAA 410 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 410 (944)
+++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|
T Consensus 347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999999987 579999999999999 89999999999999986 468999999999999 8999999
Q ss_pred HHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 411 AEMIEKAIAANPT---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 411 ~~~l~~al~~~p~---~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
+.+|+++++..|+ ++.+..+++.++.. +.++|.+..++.++..|+...+....+.
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~l~ 480 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWARMQKLK 480 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999954 88999999988765 4566666667777666766655554333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-26 Score=247.19 Aligned_cols=285 Identities=19% Similarity=0.202 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (944)
.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchh-HH-HhhhcCCHHHHHHHHHHHH
Q 002273 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPF-FE-LVKLEGDINQGVAYYKKAL 316 (944)
Q Consensus 239 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-l~~~~~~~~~A~~~~~~al 316 (944)
|++++|+..++++++..|.+...+..+........ ....+ .. ++...|++++|+..+++++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDID-----------------DLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC-------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH-----------------HHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999999988766655421110000 00001 11 2556778899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 396 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 396 (944)
+..|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++..++..
T Consensus 166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 397 LGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 397 la~~~~~~g~~~~A~~~l~~al~~~p~------------~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+|.++...|++++|++.++++++..|+ +..++..+|.++...|++++|...++++++..|++..
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 999999999999999999999999999 7999999999999999999999999999888776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-26 Score=253.70 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=238.0
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.+...++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHH---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVV 200 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 200 (944)
+...|++++|+..|+++++..|++......+ +.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999998876654443 455667799999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
|...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 296 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA------ 296 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777654
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY------------ADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
+++|+..|+++++..|+. ..++..++.++...|+.+.+....++
T Consensus 297 ------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 ------------------------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred ------------------------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 499999999999988763 45667777777777777666665554
Q ss_pred H
Q 002273 349 A 349 (944)
Q Consensus 349 a 349 (944)
.
T Consensus 353 ~ 353 (365)
T 4eqf_A 353 D 353 (365)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=252.99 Aligned_cols=413 Identities=10% Similarity=-0.007 Sum_probs=315.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
..|.+...|+.++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|+++++..| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 356788999999984 7899999999999999999999999999999999999999999999999999999 67788888
Q ss_pred HH-HHHHcCCHHHHHH----HHHHHHHc---CCCChhHHhHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHh
Q 002273 123 GI-LYKDEGRLVEAAE----SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKL---------AGNTQDGIQKYYEALK 185 (944)
Q Consensus 123 a~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~lg~~~~~---------~g~~~~A~~~~~~al~ 185 (944)
+. +....|++++|.+ .|++++.. +|..... +...+..... .|++++|..+|+++++
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI-------WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH-------HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 85 4456788877765 78888765 3344333 3334443333 6889999999999999
Q ss_pred hCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHHH
Q 002273 186 IDPHYA--PAYYNLGVVY-------------SELMQYDTALGCYEK------AALE-----RPMY-------AEAYCNMG 232 (944)
Q Consensus 186 ~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~~~~~la 232 (944)
.|... ..|....... ...+++.+|...+++ .++. .|.. ...|....
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 56543 2333322221 134567888877766 3332 2321 23444443
Q ss_pred HHHHHc----CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hhhhhhhhHHHHHhhcCCCCCchhHH
Q 002273 233 VIYKNR----GDL----ESAIACYERCLAVSPNFEIAKNNMAIALTD-------LGTKTYGRALLLFRLNGSNFQSPFFE 297 (944)
Q Consensus 233 ~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~l~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (944)
...... ++. ++++..|++++...|.++..|..++..+.. .|+...+..+
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~---------------- 301 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF---------------- 301 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH----------------
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh----------------
Confidence 332221 232 478899999999999999999999999876 4543211100
Q ss_pred HhhhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHH
Q 002273 298 LVKLEGDINQGVAYYKKALY-YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDK 375 (944)
Q Consensus 298 l~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~ 375 (944)
.++|+..|+++++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++
T Consensus 302 -------~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 302 -------SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp -------HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 2789999999997 7899999999999999999999999999999999999885 689999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 376 AVECYQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
|++.|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.++..++.++...|+.++|...|++++..
T Consensus 375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 375 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999999999988877777776666 346899999999999999999999999999999999999999999999999998
Q ss_pred CCCChh----hhhhHHHHhhhccCCChHHHHHHHHHHHHH
Q 002273 455 DPDSRN----AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 490 (944)
Q Consensus 455 ~P~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (944)
.|.++. .+... .......|+.+......++..+.
T Consensus 455 ~~~~~~~~~~lw~~~--~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARF--LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHH--HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Confidence 877654 33221 11223457776665554444333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=247.38 Aligned_cols=380 Identities=12% Similarity=-0.014 Sum_probs=269.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh
Q 002273 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 150 (944)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 688999999999999999984 7899999999999999999999999999999999999999999999999999999 45
Q ss_pred hHHhHHHHHHHHHHH-HHHHcCChHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHH
Q 002273 151 PAAECLAIVLTDLGT-SLKLAGNTQDGIQ----KYYEALKI---DPHYAPAYYNLGVVYSE---------LMQYDTALGC 213 (944)
Q Consensus 151 ~~~~~la~~~~~lg~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~ 213 (944)
+.+ ...+. .....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+
T Consensus 80 ~lw-------~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 80 DLW-------KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 443 33332 2334577776665 78888764 56778888888887765 7899999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCc-------HH
Q 002273 214 YEKAALERPMYA--EAYCNMGVIY-------------KNRGDLESAIACYER------CLAV-----SPNF-------EI 260 (944)
Q Consensus 214 ~~~al~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~ 260 (944)
|+++++ .|... ..+....... ...+++.+|...++. .++. .|.. ..
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 999999 56542 2333222211 124567778777665 3332 2321 12
Q ss_pred HHHHHHHHHHHh----hhh--hhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 261 AKNNMAIALTDL----GTK--TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334 (944)
Q Consensus 261 ~~~~la~~l~~~----~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 334 (944)
.+.......... +.. ...+++..+.. .+....+..++.-.+-..+... ...+ .
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~-----------al~~~p~~~~~w~~~~~~~~~~------~~~~----~ 290 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ-----------CLLVLGHHPDIWYEAAQYLEQS------SKLL----A 290 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHHHHHH------HHHH----H
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHh------chhh----h
Confidence 333322221110 000 00111111110 0000111111111111111100 0000 1
Q ss_pred HcCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcC
Q 002273 335 EMLKF-------DMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQG 405 (944)
Q Consensus 335 ~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 405 (944)
..|++ ++|+..|+++++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc
Confidence 23444 499999999997 8999999999999999999999999999999999999986 69999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHH
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 483 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~ 483 (944)
++++|++.|+++++..|.....+...+.+ +...|++++|...|+++++.+|+++.++.++.. .+...|+.+++...
T Consensus 371 ~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~--~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID--YLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHTTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH--HHHhCCCHhhHHHH
Confidence 99999999999999999887877777766 446999999999999999999999988876433 34455665554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=250.25 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=205.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHH
Q 002273 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 184 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 344566667777777777777777777777777777777777777777777777775 7777777777777777777777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
.+++.++..+++ +++|+..|+++++++|++..+|..+|.++...|++++|
T Consensus 170 ~~~g~~~~~~g~------------------------------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 170 HHRRVLVEWLRD------------------------------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHHHHHHHHTC------------------------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHccC------------------------------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 777776655443 37777777777777888888888888888888999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMI 414 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l 414 (944)
+.+|+++++++|++..+|+++|.++.. .|..++| +++|+++++++|++..+|++++.++...| ++++|++.+
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 999999999999999999999999988 5554777 58999999999999999999999999988 689999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhhCCCChhhhhhHHHH
Q 002273 415 EKAIAANPTYAEAYNNLGVLYRDAG--------S-ISLAIDAYEQC-LKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~la~~~~~~g--------~-~~eA~~~~~~a-l~l~P~~~~a~~~~~~~ 468 (944)
+++ +.+|++..++..+|.+|..+| + +++|+++|+++ ++++|.....+..+...
T Consensus 300 ~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 300 LDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 888 889999999999999999875 2 58999999999 99999988877765433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=240.01 Aligned_cols=277 Identities=18% Similarity=0.213 Sum_probs=247.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHH------HHHHHH-HH-HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA------IVLTDL-GT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la------~~~~~l-g~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
...|++++|+..++++++..|.+......+. .....+ +. ++...|++++|+..++++++..|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 9999999999999999999998876543320 011112 33 467789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++...
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------ 253 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM------ 253 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999998888876654
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH------------YADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
|++++|+..++++++..|. +..++..++.++...|++++|...+
T Consensus 254 ------------------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 254 ------------------------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred ------------------------ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5669999999999999998 7888899999999999999998888
Q ss_pred HHHHhhC
Q 002273 347 ELAFHFN 353 (944)
Q Consensus 347 ~~al~~~ 353 (944)
+++++..
T Consensus 310 ~~~l~~~ 316 (327)
T 3cv0_A 310 AQNVEPF 316 (327)
T ss_dssp TCCSHHH
T ss_pred HHHHHhc
Confidence 8776653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=240.58 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALERPMYAEAYCNMGVIY 235 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (944)
+.++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|+.+|.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34578888999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
..+|++++|+..|+++++++|++..++.+++.++..+|+. ++|+..|+++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~------------------------------~eAl~~~~~a 226 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW------------------------------DNELQYVDQL 226 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC------------------------------TTHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh------------------------------HHHHHHHHHH
Confidence 9999999999999999999999999999999998776654 9999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhC
Q 002273 316 LYYNWHYADAMYNLGVAYGE-MLKFDMA-----IVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIK 387 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 387 (944)
++.+|.+..+|+.+|.++.. .|.+++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+
T Consensus 227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 99999999999999999999 5555888 59999999999999999999999999988 699999999998 999
Q ss_pred CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc
Q 002273 388 PNFSQSLNNLGVVYTVQG---------KMDAAAEMIEKA-IAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g---------~~~~A~~~l~~a-l~~~p~~~~a~~~la~~~~~~ 438 (944)
|++..++..+|.+|.++| .+++|+++|+++ ++++|.....|..++..+..+
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999999999999985 359999999999 999999999999999887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=245.40 Aligned_cols=381 Identities=15% Similarity=0.078 Sum_probs=281.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..+|..+++.|++++|+.+|+++.+. +++.+++.+|.++...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56899999999999999999999876 5778899999999999999 9999999999976 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 129 EG-----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 129 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+ ++++|+.+|+++++..+. .+ ++.+|.+|...+... ++...+.++.. +.++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--~A-------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--NT-------LIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--SC-------HHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--HH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 66 889999999999986543 34 566677776665544 34555555543 3457899999999
Q ss_pred HHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 201 YSELMQYDTALGC----YEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 201 ~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
|...+.++++... ++.+...+ +.+++.+|.+|...| ++++|+..|+++.+..+.....+++++.++....
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999965555444 44444444 449999999999999 9999999999999999999888888888874321
Q ss_pred hhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHH
Q 002273 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAF 350 (944)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al 350 (944)
...+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.
T Consensus 228 --------------------------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 228 --------------------------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp --------------------------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred --------------------------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 12478899999999998 8899999999999 4 57899999999999998
Q ss_pred hhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 002273 351 HFNPHCAEACNNLGVIYKDRD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~ 421 (944)
+.. ++.+++++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-- 350 (452)
T 3e4b_A 279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-- 350 (452)
T ss_dssp HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--
T ss_pred HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--
Confidence 654 8999999999998 45 9999999999998 8999999999999887 4499999999999986
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHHH
Q 002273 422 PTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 490 (944)
Q Consensus 422 p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (944)
+.++.+.++||.+|.. ..++.+|..+|+++.+..+. .+...+......+...+..+..+..++|...
T Consensus 351 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 351 NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4568899999999985 46899999999999987654 3443332222233222333444445555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-23 Score=215.66 Aligned_cols=238 Identities=17% Similarity=0.170 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 229 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 229 (944)
+..+..+|.++...|++++|+..|+++++.+ .+..++..+|.++...|++++|+..++++++..|.+ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 5568888888899999999999999999888 888899999999999999999999999998887765 68888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHH
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~ 309 (944)
.+|.++...|++++|+..|+++++..|.. .++.. .|++++|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~------------------------------~~~~~~a~ 125 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK------------------------------LRNAEKEL 125 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH------------------------------HHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH------------------------------HhHHHHHH
Confidence 89999999999999999999888887761 12222 22336666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
..+++++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 66666666665555556666666666666666666666655555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGV 433 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~la~ 433 (944)
++.++..+|.++...|++++|+.+++++++++ |++..++..++.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 55555555555555555555555555555555 555544444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=222.45 Aligned_cols=243 Identities=17% Similarity=0.146 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI----AKNNMAI 267 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~ 267 (944)
+.++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .|.+.. ++..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666 332222 2444444
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 347 (944)
++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+
T Consensus 83 ~~~~------------------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 83 ILMK------------------------------KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHH------------------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHH------------------------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4333 3445777777777777777778888899999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---
Q 002273 348 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN--- 421 (944)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~--- 421 (944)
++++.+|.++.++..+|......+++++|++.|+++++.+|++..++..+|.++...|+ +++|+..++++++..
T Consensus 133 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 133 KQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp GGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999555555699999999999999999999999999999999998 888999999999885
Q ss_pred CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 422 PT-----YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 422 p~-----~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|+ ...++..+|.+|...|++++|+++|+++++++|+++.++..+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 44 236889999999999999999999999999999998887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=212.40 Aligned_cols=200 Identities=19% Similarity=0.163 Sum_probs=178.1
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 125 LYKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (944)
Q Consensus 125 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (944)
++... |++++|+..|+++++++|++..+ +..+|.++...|++++|+..|+++++++ +++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL-------HLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 99999 99999999999999999998765 7788888999999999999999999999 99999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
+..+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=216.87 Aligned_cols=260 Identities=8% Similarity=-0.034 Sum_probs=166.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH
Q 002273 90 ICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (944)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (944)
...+..|+|++|+..+++....+|++ .+....++.+|..+|++++|+..++.. +|. . ..++..++..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~---~----~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAP---E----LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCH---H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CCh---h----HHHHHHHHHHHc
Confidence 34567788888888887776666665 356677788888888888888766441 221 1 234566777777
Q ss_pred HcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 169 LAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
..++.++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |.+.+++..+|.++..+|++++|++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888765 588889999999999999999999999887 7888999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAM 326 (944)
Q Consensus 247 ~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 326 (944)
.|+++++.+|++.... ++..+..+ +...|++++|+..|+++++..|+++.++
T Consensus 152 ~l~~~~~~~p~~~~~~--l~~a~~~l--------------------------~~~~~~~~eA~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQ--LATAWVSL--------------------------AAGGEKLQDAYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp HHHHHHHHCTTCHHHH--HHHHHHHH--------------------------HHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhhCcCcHHHH--HHHHHHHH--------------------------HhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999888764322 22111111 1112334444444444444444444444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhhCCCCHH
Q 002273 327 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIKPNFSQ 392 (944)
Q Consensus 327 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~ 392 (944)
+.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+.++ +.++++++++++|+++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 4444444444444444444444444444444444444444444444433 23444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-23 Score=214.39 Aligned_cols=236 Identities=18% Similarity=0.195 Sum_probs=217.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-------EIAK 262 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 262 (944)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|++ ...+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 4556
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
..++.++. ..|++++|+..+++++...|. +.++...|++++|
T Consensus 83 ~~l~~~~~------------------------------~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 83 ARIGNAYH------------------------------KLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHH------------------------------HTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------------HcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHH
Confidence 66665544 456779999999999999887 5677788899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+..+++++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChhhhhh
Q 002273 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID------PDSRNAGQN 464 (944)
Q Consensus 423 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~------P~~~~a~~~ 464 (944)
+++.++..+|.++...|++++|+.+|+++++++ |++..+...
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 999999999999999999999999999999999 776665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=218.23 Aligned_cols=258 Identities=15% Similarity=0.144 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCG 123 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 123 (944)
++.++..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666666665 2222 22355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
.++...|++++|+..|+++++.+|.+... +..+|.++...|++++|+..|+++++.+|.+..+++.+|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDM-------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHH-------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 66666666666666666666655555432 55555555555555555555555555555555555555533333
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
.+++++|+..|+++++.+|++..++..+|.++...++ +++|+..|+++++.....+...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------ 216 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------------------ 216 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG------------------
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc------------------
Confidence 3455555555555555555555555555555555555 5555555555544331111000
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
......++..+|.+|...|++++|+.+|+++++++|+++.++
T Consensus 217 --------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 217 --------------------------------------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 000124566677777777777777777777777777777776
Q ss_pred HHHHHHHHH
Q 002273 361 NNLGVIYKD 369 (944)
Q Consensus 361 ~~la~~~~~ 369 (944)
..++.+...
T Consensus 259 ~~l~~~~~~ 267 (272)
T 3u4t_A 259 DGLKMKLEH 267 (272)
T ss_dssp HHHC-----
T ss_pred HHhhhhhcc
Confidence 666655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=209.80 Aligned_cols=211 Identities=21% Similarity=0.174 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002273 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (944)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 267 (944)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 347 (944)
++...+.. .+. .....|++++|+..|+
T Consensus 82 ~~~~~~~~--------------------------~~~---------------------------~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 82 AYVALYRQ--------------------------AED---------------------------RERGKGYLEQALSVLK 108 (217)
T ss_dssp HHHHHHHT--------------------------CSS---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--------------------------hhh---------------------------hcccccCHHHHHHHHH
Confidence 87665321 000 1123466777777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 348 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427 (944)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a 427 (944)
++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.+
T Consensus 109 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 109 DAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187 (217)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 7777777777777777777777777777777777777777 777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
+..+|.++...|++++|+..|+++-
T Consensus 188 ~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 188 RVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=237.45 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCC
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----VEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQN 115 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 115 (944)
.....++..|..++..|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++++ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 467789999999999999999999999999999998 468899999999999999999999999876 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC--------------------hHH
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQD 175 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~--------------------~~~ 175 (944)
..++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 678999999999999999999999999998765332 23446678888888888888 888
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHH
Q 002273 176 GIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA------EAYCNMGVIYKNRGDLES 243 (944)
Q Consensus 176 A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~ 243 (944)
|+..++++++. .+....++..+|.+|...|++++|+.+++++++..+... .++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888887765 223345677777777777777777777777776544322 266667777777777777
Q ss_pred HHHHHHHHHHh
Q 002273 244 AIACYERCLAV 254 (944)
Q Consensus 244 A~~~~~~al~~ 254 (944)
|+.++++++..
T Consensus 246 A~~~~~~al~~ 256 (406)
T 3sf4_A 246 ASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=216.53 Aligned_cols=260 Identities=12% Similarity=0.008 Sum_probs=230.5
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (944)
..+..|++++|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456799999999999887777776 46778899999999999999998866 2555677888999999999999999
Q ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 245 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 245 ~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
++.+++++.. +|++...+..++.++... |++++|+..+++ |.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~------------------------------g~~~~Al~~l~~-----~~~ 129 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYD------------------------------QNPDAALRTLHQ-----GDS 129 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHTT-----CCS
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHhC-----CCC
Confidence 9999999876 599999998888886654 566999999988 889
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (944)
..++..+|.++..+|++++|++.|+++++.+|++.......+ .++...|++++|+..|+++++..|+++.+++++|.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999865544434 444456899999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChhhhh
Q 002273 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 401 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~e-A~~~~~~al~l~P~~~~a~~ 463 (944)
+..+|++++|+..|+++++.+|++++++.++|.++...|+..+ +.++++++++++|+++.+..
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999999999999999999976 57899999999999986653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=233.68 Aligned_cols=305 Identities=24% Similarity=0.261 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
.....++.+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++...+.... ...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cHH
Confidence 4567788888888888888888888888888888874 56788888888888888888888888877544322 233
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQ--------------------YDT 209 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 209 (944)
.+.++..+|.++...|++++|+..++++++..+.. ..++..+|.+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46677778888888888888888888887765432 4477777778877777 777
Q ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 210 ALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 210 A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
|+..++++++. .+....++..+|.++...|++++|+.+++++++..+......
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 224 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH---------------------
Confidence 77777777664 222345667777777777777777777777766543211100
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------A 357 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 357 (944)
....++..+|.++...|++++|+.++++++.+.+.. .
T Consensus 225 -------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 225 -------------------------------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 013467788888888888888888888888876554 6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYA 425 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~ 425 (944)
.++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.++++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 788888999999999999999999988875433 56888899999999999999999999888732 336
Q ss_pred HHHHHHHHHHHHcCCHHH
Q 002273 426 EAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~e 443 (944)
.++..+|.++...|+...
T Consensus 348 ~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 778888888888887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=227.36 Aligned_cols=290 Identities=23% Similarity=0.265 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYA 225 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 225 (944)
.+..+..+|..+...|++++|+..|+++++..|++. .++..+|.+|...|++++|+.+++++++. .+...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 355677899999999999999999999999999986 58999999999999999999999999987 46667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHh
Q 002273 226 EAYCNMGVIYKNRGDLESAIACYERCLAV------SPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299 (944)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 299 (944)
.++..+|.++...|++++|+..|+++++. .+....++..++.++...++... ......+. -
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-------~~~~~~~~------~ 193 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG-------QRNPGKFG------D 193 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH-------HHSTTCCC------H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc-------cccchhhh------h
Confidence 89999999999999999999999999988 44455677777777777665000 00000000 0
Q ss_pred hhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 002273 300 KLEGDINQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIY 367 (944)
Q Consensus 300 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 367 (944)
.....+++|+.+++++++.. +....++..+|.++...|++++|+.++++++++.+.. ..++..+|.++
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 00112588888888887753 2235689999999999999999999999999986543 33899999999
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 002273 368 KDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLY 435 (944)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~la~~~ 435 (944)
...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 99999999999999999987644 6789999999999999999999999999885432 56899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC
Q 002273 436 RDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 436 ~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
...|++++|+++|++++++.+..
T Consensus 354 ~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=216.48 Aligned_cols=290 Identities=23% Similarity=0.250 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAY 228 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 228 (944)
.+...|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 46778999999999999999999999999998 468889999999999999999999999876 34456789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFE------IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
..+|.++...|++++|+..++++++..+... ..+..++.++...++.... ..............
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC----------PGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS----------SSCC----CCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc----------chhhhhhhhhhhHH
Confidence 9999999999999999999999998765432 2566666666665541000 00000000000011
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHC
Q 002273 303 GDINQGVAYYKKALYY------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR 370 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 370 (944)
..+++|+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 1268888888888765 22335689999999999999999999999999875432 34899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q 002273 371 DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDA 438 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~la~~~~~~ 438 (944)
|++++|+.++++++++.+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999999999999886654 6789999999999999999999999999875432 56889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 002273 439 GSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~~ 458 (944)
|++++|..+|++++++.++.
T Consensus 317 g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHC----
T ss_pred CChHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=202.56 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=187.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
.....+..++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34457788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDL-------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999988664 7778888999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 269 (944)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|++..++..++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887776544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=213.84 Aligned_cols=207 Identities=19% Similarity=0.192 Sum_probs=165.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----VEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNA 116 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (944)
+...++..|..++..|++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++. .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678899999999999999999999999999998 478889999999999999999999999886 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC--------------------hHHH
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQDG 176 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~--------------------~~~A 176 (944)
.++..+|.++...|++++|+..++++++..+..... ...+.++..+|.++...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 789999999999999999999999999886654332 3346678888889988888 8888
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 002273 177 IQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESA 244 (944)
Q Consensus 177 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 244 (944)
+..++++++. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765 22234567777888888888888888888777654321 23666777777777777777
Q ss_pred HHHHHHHHHh
Q 002273 245 IACYERCLAV 254 (944)
Q Consensus 245 ~~~~~~al~~ 254 (944)
+..+++++..
T Consensus 243 ~~~~~~al~~ 252 (338)
T 3ro2_A 243 SEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=223.54 Aligned_cols=354 Identities=17% Similarity=0.099 Sum_probs=262.7
Q ss_pred ChHHHHHHHHHHHhCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCCCHHH
Q 002273 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----MGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~ 118 (944)
++++++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|+++++. .++.+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A 108 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNT 108 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSC
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 455677788888888888 9999999999976 7889999999777665 889999999999985 45568
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHhhCCCCH
Q 002273 119 HTHCGILYKDEGRLVE---AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALKIDPHYA 191 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~----~~~~al~~~p~~~ 191 (944)
++.+|.+|...+...+ +.+.+.++.... +.. +.+.+|.++...+.+++++. +++.+...+|
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~-------a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--- 176 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPE-------AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--- 176 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTT-------HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHH-------HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---
Confidence 9999999998876554 444555544332 233 36778888888885555444 4555444444
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 192 PAYYNLGVVYSELM---QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 192 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |+++.++.+
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 49999999999999 999999999999999999999999999999776 79999999999997 899999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----Ch
Q 002273 265 MAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML-----KF 339 (944)
Q Consensus 265 la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~ 339 (944)
++.++... ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++
T Consensus 254 Lg~~~~~~---------------------------~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 254 LAQLLYDF---------------------------PELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHS---------------------------GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHhC---------------------------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCH
Confidence 99885421 1257889999999999865 48999999999998 55 99
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 002273 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAA 411 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 411 (944)
++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++++|.
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999999 8899999999999987 4599999999999987 4568899999999985 56999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Q 002273 412 EMIEKAIAANPTYAEAYNNLGVLYRDA--GSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 412 ~~l~~al~~~p~~~~a~~~la~~~~~~--g~~~eA~~~~~~al~l~P~ 457 (944)
.+|+++.+..+ ..+...++.+...+ ++..+|....++..+..++
T Consensus 379 ~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 379 VFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 99999987654 56666676665433 3566777777766665443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=224.13 Aligned_cols=286 Identities=21% Similarity=0.195 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
+.....++.+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|+++++....... ..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-ch
Confidence 34566778899999999999999999999999999886 57888999999999999999999999887543322 24
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQ-----------------YDTAL 211 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~ 211 (944)
..+.++..+|.++...|++++|+..|+++++. .+....++..+|.+|...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 45677888889999999999999999888887 45556788888888888888 88888
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 212 GCYEKAALER------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 212 ~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
.+++++++.. +....++..+|.++...|++++|+.+++++++..+......
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------- 260 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----------------------- 260 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH-----------------------
Confidence 8888887653 22345777888888888888888888888777644311000
Q ss_pred hcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHH
Q 002273 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEA 359 (944)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 359 (944)
....++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 261 -----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 261 -----------------------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 013467888999999999999999999998886643 678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+..+|.++...|++++|+.++++++++.+. ...++..+|.+|...|++++|+.++++++++.+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999987543 2458899999999999999999999999998765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=198.81 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 271 (944)
..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------- 92 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT----------- 92 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH-----------
Confidence 345555555555555555555555555555555555555555555555555555555555544444333
Q ss_pred hhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 351 (944)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 351 (944)
++..+|.++...|++++|+..++++++
T Consensus 93 -----------------------------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 93 -----------------------------------------------------AYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333333444444444444444444
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 352 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|++..++..+
T Consensus 120 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
|.++...|++++|+.+|+++++++|++..++
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 4444444444444444444444444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-20 Score=194.95 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=198.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+|.++.+++.+|.++...|++++|+.+|+++++ ++++.+++.+|.++.. .+++++|+.+|+++++.. +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 466777888888888888888888888888887 6677888888888888 888888888888888774 66777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLK 338 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 338 (944)
..++.++..-. ...+++++|+.+|+++++. .++.++..+|.+|.. .++
T Consensus 78 ~~lg~~~~~g~--------------------------~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 78 HLLGNLYYSGQ--------------------------GVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp HHHHHHHHHTS--------------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHHHhCCC--------------------------CcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC
Confidence 77776654410 0145668888888888876 378899999999999 999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAA 410 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 410 (944)
+++|+.+|+++++.+ +..++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|
T Consensus 130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 999999999999876 68899999999999 99999999999999987 468899999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChh
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+.+|+++++..| +.+++.+|.+|.. .+++++|+++|++++++.|++..
T Consensus 206 ~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 206 LARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999866 8899999999999 99999999999999999987543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-20 Score=194.05 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHH--cCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 128 DEGRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
..|++++|+..++++++ ..|.+. .++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERS-------RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCccCcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999 555543 357888999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 263 (944)
++++|+..++++++..|.+...+..++.++...|++++|...++++++..|++.....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-19 Score=189.13 Aligned_cols=229 Identities=21% Similarity=0.273 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 002273 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 188 (944)
|+++.+++.+|.++...|++++|+.+|+++++ +++.. ++..+|.++.. .+++++|+.+|+++++.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~-------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS-------GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 34444444444444444444444444444444 22222 23344444444 444555555555544442
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHH
Q 002273 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
++.+++.+|.+|.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 144 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----- 144 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----
Confidence 45555555555555 55555555555555554 245555555555555 555555555555554432
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 002273 261 AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----M 336 (944)
Q Consensus 261 ~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 336 (944)
+..++..+|.++.. .
T Consensus 145 -------------------------------------------------------------~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 145 -------------------------------------------------------------DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHTSSSC
T ss_pred -------------------------------------------------------------cHHHHHHHHHHHHcCCCCC
Confidence 23344445555555 5
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMD 408 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 408 (944)
+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..+ +.+++.+|.+|.. .++++
T Consensus 164 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 164 KDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 5566666666665554 235566666666666 6666666666666666544 5666666666666 66666
Q ss_pred HHHHHHHHHHHhCCCC
Q 002273 409 AAAEMIEKAIAANPTY 424 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~ 424 (944)
+|+++|+++++..|++
T Consensus 240 ~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 240 QAIENFKKGCKLGAKG 255 (273)
T ss_dssp THHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCHH
Confidence 6777777666666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=200.92 Aligned_cols=247 Identities=17% Similarity=0.146 Sum_probs=204.6
Q ss_pred HHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 167 LKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (944)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 334578999999999999873 4567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
+|+..|+++++.+|++..++..++.++... |++++|+..++++++..|++
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~------------------------------g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYG------------------------------GRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHh------------------------------ccHHHHHHHHHHHHHhCCCC
Confidence 999999999999999988888888776554 45599999999999999988
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLG 398 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 398 (944)
......++.. ...|++++|+..+++++...|.+...+. ++.++...++.++|+..++++++..|.. ..++..+|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 8766655544 5668999999999999888887765544 6777778888889999999888776643 67888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 448 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~ 448 (944)
.++...|++++|+.+|+++++.+|++... .+.++..+|++++|++.|
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999888876443 367788888888888877
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-20 Score=192.06 Aligned_cols=208 Identities=18% Similarity=0.110 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
+.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.++++++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 55566666666666666666666666666666666666666666666666666666666655554
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
|.+..++..+|.++...|++++|+.++++++
T Consensus 102 -------------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 102 -------------------------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp -------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------------------------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445566677777777888888888888888
Q ss_pred h--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 351 H--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 351 ~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
+ ..|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++
T Consensus 133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 7 67777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
..++.++...|++++|.++++++++++|+++.+.
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888888888888888888888888888877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-20 Score=182.86 Aligned_cols=172 Identities=25% Similarity=0.363 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (944)
+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 4566777777777777777777777777777777777777777777777777777777777777777776554
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+..+|.++...++++.|+..+.++++.+|++..++..+|.+|...|++++|++.|+++++.+|.++.++..+|.+|..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 55566666677777777777777777777777777788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 002273 240 DLESAIACYERCLAVSPNF 258 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~ 258 (944)
++++|+..|+++++++|++
T Consensus 156 ~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHhCCccC
Confidence 8888888888888777764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=184.71 Aligned_cols=213 Identities=16% Similarity=0.122 Sum_probs=161.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------ 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------ 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------
Confidence 34455556666666666666666666666666666666666666666666666655555555555554
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVF 345 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~ 345 (944)
.|.+..++..+|.++... |++++|+..
T Consensus 72 ----------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 72 ----------------------------------------------------KPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp ----------------------------------------------------CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ----------------------------------------------------CCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444556667777778888 888888888
Q ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 002273 346 YELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP- 422 (944)
Q Consensus 346 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p- 422 (944)
++++++ ..|.+..++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..++++++..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888888 55666788888888888888888888888888888888888888888888888889899888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 423 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.+..++..++.++...|+.++|..+++.+++.+|+++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888888888888888888888876543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=194.99 Aligned_cols=253 Identities=14% Similarity=0.073 Sum_probs=217.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
..+...|++++|+..|+++++..+.+.. ..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred eccCccchHHHHHHHHHHHHhcccccCc---hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3444568899999999999998654432 2356789999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++.......+..
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------- 154 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA--------------- 154 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---------------
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999987655444322
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEA 359 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~ 359 (944)
...|++++|+..+++++...|.+...+. ++..+...++.++|+..+++++...|.. ..+
T Consensus 155 ----------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 155 ----------------EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp ----------------HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ----------------HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 2246779999999999999988766554 7788888899999999999999887643 789
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
+..+|.++...|++++|+..|+++++.+|++... .+.++..+|++++|++.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999977443 477888999999999887
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=183.50 Aligned_cols=217 Identities=20% Similarity=0.159 Sum_probs=201.3
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+..+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 124 ILYKDE-GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 124 ~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
.++... |++++|+..++++++ .|.++.. ..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTP----YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999 999999999999999 3333221 3357889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002273 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (944)
..|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+..|++......+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999 9999999999999999999999999999999999988765443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=210.73 Aligned_cols=361 Identities=11% Similarity=0.076 Sum_probs=240.3
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
..+++..-..++.|...|.+.+|+++|++++-... ++...-..++.+..+. +..+..++..+.-..+ .-.
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~e 1054 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APD 1054 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHH
Confidence 34666667778888899999999999999994332 2444444455555554 3444444444432211 234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (944)
+|.++...|.+++|..+|+++- .+.. .+...+...+++++|+++++++ +.+.+|+.+|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~----------A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS----------AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH----------HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHH
Confidence 8999999999999999999972 1111 1222334678999999998865 5689999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHH
Q 002273 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~ 281 (944)
...|++++|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++. .....++.+|.++++....+..
T Consensus 1116 l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHH
Confidence 9999999999999886 788999999999999999999999999999887542 2333577777777554321111
Q ss_pred HHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (944)
. ..........++..+...|++++|+.+|.++ ..|..++.++.++|++++|++.++++ .+..+|.
T Consensus 1190 I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWk 1254 (1630)
T 1xi4_A 1190 I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK 1254 (1630)
T ss_pred H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHH
Confidence 1 0000011113445566666666666666664 35666666666666666666666666 3356666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--G 439 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~--g 439 (944)
..+.++...|++..|..+... +.. +++.+..++..|...|.+++|+.++++++.+++.+...+..+|.+|.+- +
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 666666666666666665553 222 2344446666666666666776666666666666666666666665543 3
Q ss_pred CHHHHHHHHHHHHhhCC
Q 002273 440 SISLAIDAYEQCLKIDP 456 (944)
Q Consensus 440 ~~~eA~~~~~~al~l~P 456 (944)
+..++++.|...+.+.|
T Consensus 1331 klmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHHHHHhcccch
Confidence 55666666666666555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=180.33 Aligned_cols=162 Identities=24% Similarity=0.373 Sum_probs=156.8
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++..++..+|.++...+++++|+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 94 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAID 94 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.++++++.+|++..++..+|.++..+|++++|++.|+++++.+|+++.+++++|.+|..+|++++|+++|+++++++|++
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hh
Q 002273 459 RN 460 (944)
Q Consensus 459 ~~ 460 (944)
+.
T Consensus 175 a~ 176 (184)
T 3vtx_A 175 AK 176 (184)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=196.69 Aligned_cols=229 Identities=10% Similarity=0.042 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 002273 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 204 (944)
++|+..|++++..+|.+...+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56777777777777777776665555555444444456775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+...
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~-------------- 178 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME-------------- 178 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------------
Confidence 9999999999999999998886 8999999999999999999999999998887655544322211
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CC-CCHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEA 359 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~ 359 (944)
+...|++++|+..|+++++.+|+++.++..++.++...|++++|+.+|++++.. .| ....+
T Consensus 179 ---------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 179 ---------------YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp ---------------HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred ---------------HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 111355566666666666666666666666666666666666666666666663 33 24555
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 390 (944)
|..++..+...|++++|...++++++..|++
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 6666666666666666666666666666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=211.95 Aligned_cols=233 Identities=20% Similarity=0.221 Sum_probs=168.8
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (944)
+.+++++..+++.....|.+..+++.+|.++...|++ ++|+++|+++++.+|++..++..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567888889998999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329 (944)
Q Consensus 250 ~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 329 (944)
++++++|+ ..++..++.++...... ......|++++|+..|+++++.+|++..++..+
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~---------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTD---------------------SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCS---------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccC---------------------ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 68888888887665100 001122455888888888887777777777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCC
Q 002273 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 330 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~ 406 (944)
|.+|... ++..+. ..|++++|+.+|+++++++| +++.+++++|.+|...|+
T Consensus 220 g~~~~~~-----------------------~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 220 GNAYLSL-----------------------YFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHH-----------------------HHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-----------------------HHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 7777666 000000 00445555555555555555 555555556666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
+++|+..|+++++++|++..++..++.++..+|++++|++.+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666666666666666666666666666666666555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=213.04 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
+++++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|++..++..++.++...+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---------- 151 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---------- 151 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------
Confidence 3477888889998899999999999999999999999 99999999999999999999999998876654
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
++++|+..|+++++.+|+ ..++..+|.++...+.-
T Consensus 152 --------------------~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~------------------------ 186 (474)
T 4abn_A 152 --------------------DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD------------------------ 186 (474)
T ss_dssp --------------------CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCS------------------------
T ss_pred --------------------CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccC------------------------
Confidence 558888888888888777 57777777766665110
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--------GKMDAAAEMIEKAIAANP---TYAEAYNNLG 432 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~l~~al~~~p---~~~~a~~~la 432 (944)
......|++++|++.|+++++++|+++.+++++|.+|... |++++|+.+|+++++++| +++.+++++|
T Consensus 187 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 187 -SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred -ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 0001226677777777777777888888888888888877 999999999999999999 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 433 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
.+|...|++++|++.|+++++++|++..++.++...+..+ ++.+++.+
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l--g~~~eAi~ 313 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL--SRLTSLLE 313 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999998887765444333 34444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=187.19 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=197.6
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
.++..++..|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4678999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 202 (944)
++..+|++++|+..|+++++.+|++......++.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999 9999999999997
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 269 (944)
..| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|++..+...++.+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 655 445677777766665444 344556678899999999999999999999888877664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=207.76 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.++.+|.++...|++++|+.+|+++++. .++ ...++..+|.++...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4456999999999999999999999986 222 4678999999999999999999999999998665543233334
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFD 340 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 340 (944)
.++..+|.. +...|++++|+.+++++++..+.. ..++.++|.+|...|+++
T Consensus 185 ~~~~~lg~~-----------------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 185 QCHSLFATN-----------------------FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHH-----------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHH-----------------------HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence 444444433 666788899999999999875432 358999999999999999
Q ss_pred HHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---
Q 002273 341 MAIVFYELAFH-----FN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK--- 406 (944)
Q Consensus 341 ~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~--- 406 (944)
+|+.+++++++ .+ |....++.++|.++...|++++|+.++++++++. |.....+..+|.++...|+
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999 45 7778999999999999999999999999999884 3333456789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+++|+.++++. ...|....++..+|.+|...|++++|..+|++++++...-
T Consensus 322 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 322 IQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 88888888876 3334456789999999999999999999999999886543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=188.16 Aligned_cols=154 Identities=6% Similarity=0.016 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMA 383 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 383 (944)
++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|+++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a 195 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 195 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444443 555555666666666666666666666666665555555444332 56666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p-~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
++.+|+++.++..++.++...|++++|+..|+++++. .| +...+|..++..+...|+.++|...++++++..|++.
T Consensus 196 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 6666666666666666666666666666666666664 33 2455666666666666666666666666666666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-19 Score=199.37 Aligned_cols=315 Identities=14% Similarity=0.071 Sum_probs=230.2
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHhCCHHHHH-----------HHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAH--IGK--GICLQMQNMGRLAF-----------DSFSE 107 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~ 107 (944)
..+...+.....+..++++++|..+++++.+.-+ .+...+ +.+ .......++++.+. +.+++
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 4677888889999999999999999999866432 344433 222 22223344444444 55555
Q ss_pred HHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 108 AVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (944)
Q Consensus 108 al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~ 181 (944)
+-. .+.... .++.+|.++...|++++|+..|++++++.....+ ....+.++..+|.++...|++++|+..++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 333322 3455999999999999999999999987433222 23357789999999999999999999999
Q ss_pred HHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 182 EALKIDPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACY 248 (944)
Q Consensus 182 ~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 248 (944)
++++..+. ...++..+|.+|...|++++|+.+|+++++..+.. ..++.++|.+|..+|++++|+.+|
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99998443 34588999999999999999999999999875432 358899999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHH
Q 002273 249 ERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN-WHYADAMY 327 (944)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 327 (944)
++++++.+.. .+ |....++.
T Consensus 248 ~~al~~~~~~-----------------------------------------------------------~~~~~~~~~~~ 268 (383)
T 3ulq_A 248 KRAIAVFEES-----------------------------------------------------------NILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHHT-----------------------------------------------------------TCGGGHHHHHH
T ss_pred HHHHHHHHhh-----------------------------------------------------------ccchhHHHHHH
Confidence 9998742110 01 22345667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
.+|.++...|++++|+.++++++++. +.....+..+|.++...|+ +++|+..+++. ...+....++..+|.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 77777777788888888887777762 3333345668888888888 77777777766 333444567788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+|...|++++|+.++++++++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-18 Score=203.27 Aligned_cols=320 Identities=17% Similarity=0.164 Sum_probs=260.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (944)
.|.++...|.|++|..+|+++- .+..+ +...+...+++++|+++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 3899999999999999999972 11121 233344888999999998865 56889999999999999999
Q ss_pred HHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213 (944)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 213 (944)
+|+..|.++ ++... +..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1123 EAIdsYiKA-----dD~sa-------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSS-------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HHHHHHHhc-----CChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 999999886 44443 777888999999999999999999988744 3334459999999999885 444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 214 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
|. ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++..+
T Consensus 1189 fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkL--------------------- 1234 (1630)
T 1xi4_A 1189 FI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL--------------------- 1234 (1630)
T ss_pred HH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHh---------------------
Confidence 42 233 4466778999999999999999999996 3566666666554
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 373 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 373 (944)
|++++|++.++++ .+..+|...+.++...|+|..|..+... +..+ ++.+..++..|...|.+
T Consensus 1235 ---------ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1235 ---------GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYF 1296 (1630)
T ss_pred ---------CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCH
Confidence 5669999999998 5579999999999999999999998874 4333 55666899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p-----~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
++|+.++++++.+++.+...+..+|.+|.+ .++..+++++|...+.+.| ++...|..+..+|.+-|+++.|+.
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999889888876 5678889999998888777 678899999999999999999995
Q ss_pred HHHHH
Q 002273 447 AYEQC 451 (944)
Q Consensus 447 ~~~~a 451 (944)
.+-+.
T Consensus 1377 tm~~h 1381 (1630)
T 1xi4_A 1377 TMMNH 1381 (1630)
T ss_pred HHHhc
Confidence 54443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=214.00 Aligned_cols=174 Identities=21% Similarity=0.333 Sum_probs=155.7
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
..|++++++..+|.++..+|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4688888999999999999999999999999999999999999999999999999999999999999999988664
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
+.++|.++..+|++++|++.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++.++|.++.
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 002273 237 NRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~ 257 (944)
.+|++++|++.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 999999999999999887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-18 Score=174.57 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3455566666666666666666666666665 555555566666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al 316 (944)
.+|++++|+..|+++++.+|++......++
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------------------------------- 117 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYA-------------------------------------------------- 117 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHH--------------------------------------------------
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHH--------------------------------------------------
Confidence 666666666666666666665544333222
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 394 (944)
.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...| ...++++..+.+.....+
T Consensus 118 -------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~ 185 (228)
T 4i17_A 118 -------IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY 185 (228)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH
T ss_pred -------HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH
Confidence 34666777777777888888888888777777 7777777777775443 344566666655554433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 395 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
.+......+.+++|+.+|+++++++|++..+...++.+.
T Consensus 186 --~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 186 --ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 233344456677777777777777777777666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=195.38 Aligned_cols=241 Identities=20% Similarity=0.272 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 255 (944)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556778888888999999999999999888884 55667788889999999999999999999988773
Q ss_pred -----CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC--------CCC
Q 002273 256 -----PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN--------WHY 322 (944)
Q Consensus 256 -----p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~--------p~~ 322 (944)
|.....+..++.++ ...|++++|+.+++++++.. |..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~------------------------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLY------------------------------GKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHH------------------------------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCCCChHHHHHHHHHHHHH------------------------------HHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 33344555555554 44567799999999999874 445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN----- 389 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 389 (944)
..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++..+.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 678999999999999999999999999998 6666789999999999999999999999999986432
Q ss_pred ----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 390 ----F------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 390 ----~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
. ...+..++..+...+.+.+|...++++....|....++..+|.+|...|++++|+++|++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 2344455555666778888899999999999999999999999999999999999999999999875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=192.30 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.++.+|..+...|++++|+..|+++++..+ ....++..+|.+|...|++++|+.+++++++..+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567889999999999999999999997632 24678999999999999999999999999998665433222344
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFD 340 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 340 (944)
.++..+|.. +...|++++|+.+++++++..+. ...++.++|.+|...|+++
T Consensus 183 ~~~~~lg~~-----------------------y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 183 QSLFVIAGN-----------------------YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHH-----------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHH-----------------------HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 444444443 66678889999999999986431 2468899999999999999
Q ss_pred HHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---H
Q 002273 341 MAIVFYELAFH-----FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---M 407 (944)
Q Consensus 341 ~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~ 407 (944)
+|+.+++++++ .+|....++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999 6777789999999999999999999999999999843 344567778888888888 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
.+|+.++++. ...+....++..+|.+|...|++++|..+|++++++.
T Consensus 320 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 320 HDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888888772 2234446788899999999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-17 Score=182.10 Aligned_cols=308 Identities=11% Similarity=-0.019 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...+..... ...+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence 4455666666667777777777777766655432 256677777777888888888888877765554332 2335
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----Y 224 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 224 (944)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+++++++..+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 567778888888888888888888888763 334567788999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
..++..+|.++...|++++|...+++++...+. ....+..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-------------------------------------- 215 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-------------------------------------- 215 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH--------------------------------------
Confidence 467889999999999999999999999876432 1111100
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~ 378 (944)
.....++.++...|++++|...+++++...+.. ...+..++.++...|++++|+.
T Consensus 216 ---------------------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 274 (373)
T 1hz4_A 216 ---------------------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 274 (373)
T ss_dssp ---------------------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 011122334445556666666665555544332 2245566666666777777777
Q ss_pred HHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 379 CYQMALSIKPN------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 379 ~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
.+++++...+. ...++..+|.++...|++++|...+++++...+.. .....+...| +.....+++++
T Consensus 275 ~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~ 347 (373)
T 1hz4_A 275 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLI 347 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHH
Confidence 77666655322 12356667777777777777777777777654321 1112222333 45666667777
Q ss_pred hhCCC
Q 002273 453 KIDPD 457 (944)
Q Consensus 453 ~l~P~ 457 (944)
...|-
T Consensus 348 ~~~~~ 352 (373)
T 1hz4_A 348 QLNTL 352 (373)
T ss_dssp HTTCS
T ss_pred hCCCC
Confidence 76664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=177.33 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=160.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---H
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---A 116 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 116 (944)
..+.+++.++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 455688999999999999999999999999999999998 9999999999999999999999999999998855 5
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 117 CAHTHCGILYKD--------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 117 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
.+++.+|.++.. .|++++|+..|+++++.+|++......+..+... .+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------------~~ 145 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------------RA 145 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH------------------------HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH------------------------HH
Confidence 789999999999 9999999999999999999987653222111100 00
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhC
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNR----------GDLESAIACYERCLAVS 255 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 255 (944)
.....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 11223666777777777777777777777777666 455677777777755 67777777777777777
Q ss_pred CCcH---HHHHHHHHHHHHhhhh
Q 002273 256 PNFE---IAKNNMAIALTDLGTK 275 (944)
Q Consensus 256 p~~~---~~~~~la~~l~~~~~~ 275 (944)
|++. .+...+..++..+++.
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHh
Confidence 7764 3444455555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=174.37 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=152.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
.+..|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999999 899999999999999999999999999999998754
Q ss_pred HHhHHHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 152 AAECLAIVLTDLGTSLKL--------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 152 ~~~~la~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
. ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....++
T Consensus 88 ~----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------------- 146 (261)
T 3qky_A 88 V----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------------- 146 (261)
T ss_dssp H----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred h----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------
Confidence 3 4568889999999 9999999999999999999887665544433222111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhh
Q 002273 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN---FEIAKNNMAIALTDLG 273 (944)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~ 273 (944)
....++.+|.+|...|++++|+..|+++++..|+ ...++..++.++..+|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 1334789999999999999999999999999998 5678999999999873
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-17 Score=171.78 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
..++|+.++++++.++|++..+|+..+.++...+ ++++++..+.+++..+|++..+|...+.++..+...
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-------- 119 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-------- 119 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh--------
Confidence 3467888888888888888888888888888888 899999999999999999999988888887433211
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhhCCCCHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~ 361 (944)
....+++++++..++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|.
T Consensus 120 ---------------l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 120 ---------------NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp ---------------TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------------ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 111256799999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHCCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHH
Q 002273 362 NLGVIYKDRDN------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNL 431 (944)
Q Consensus 362 ~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~l~~al~~~---p~~~~a~~~l 431 (944)
..+.++...++ ++++++++++++..+|++..+|+.++.++...|+..+ ...+++++++++ |.++.++..+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 99999999887 9999999999999999999999999999999998555 556777777766 8889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-hCCCChhhhhhH
Q 002273 432 GVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQNR 465 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~-l~P~~~~a~~~~ 465 (944)
+.+|.+.|+.++|+++|+++.+ ++|-..+.+..+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999999999997 899887766543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=186.36 Aligned_cols=246 Identities=18% Similarity=0.158 Sum_probs=194.4
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEK--------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-- 111 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 111 (944)
...|.....+..+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999999999994 5667889999999999999999999999999987
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 112 ------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (944)
Q Consensus 112 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (944)
.|....++..+|.++...|++++|+..++++++.. ++... .+.++..+|.++...|++++|+.+|
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD----VAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35567789999999999999999999999999874 33332 3567889999999999999999999
Q ss_pred HHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHH
Q 002273 181 YEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---------------YAEAYCNMGVIYKN 237 (944)
Q Consensus 181 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~ 237 (944)
+++++. .|....++..+|.+|...|++++|+.+++++++..+. ....+..++..+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 999998 6667788999999999999999999999999975322 12334445555666
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
.+.+.+|...++++....|....++..++.++... |++++|+.+|+++++
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------------g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ------------------------------GKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHH------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHH
Confidence 67777888888888888888888888887776654 556999999999988
Q ss_pred hCCC
Q 002273 318 YNWH 321 (944)
Q Consensus 318 ~~p~ 321 (944)
+.|+
T Consensus 307 l~~~ 310 (311)
T 3nf1_A 307 SRKQ 310 (311)
T ss_dssp HHC-
T ss_pred Hhhc
Confidence 7664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=169.03 Aligned_cols=236 Identities=12% Similarity=0.026 Sum_probs=215.8
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDL 241 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~ 241 (944)
...++|+..+.+++.++|++..+|+..+.++..++ ++++++.++++++..+|++..+|...+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44479999999999999999999999999999999 999999999999999999999999999999 777 899
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC
Q 002273 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH 321 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~ 321 (944)
++++.++.++++.+|.+..+|...+.++..++.. +..+++++++++++.+|.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~----------------------------~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH----------------------------NDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT----------------------------TCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc----------------------------ChHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988776643 013899999999999999
Q ss_pred CHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhhC---CCCH
Q 002273 322 YADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFS 391 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~ 391 (944)
+..+|...+.++...++ ++++++++++++..+|.+..+|+.++.++...|+..+ ...+++++++++ |.++
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 99999999999999987 9999999999999999999999999999999998555 556777777776 8899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIA-ANPTYAEAYNNLGVL 434 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~-~~p~~~~a~~~la~~ 434 (944)
.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999999999999999999999997 799999888877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=178.65 Aligned_cols=280 Identities=14% Similarity=0.052 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (944)
.++..+|.++...|++++|+..+++++...|.... ...+.++..+|.++...|++++|+..++++++..+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778899999999999999999999998876533 2345678889999999999999999999999875433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--- 259 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 259 (944)
..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2347889999999999999999999999864 33456788899999999999999999999999887632
Q ss_pred --HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 002273 260 --IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 335 (944)
Q Consensus 260 --~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 335 (944)
..+..++.+ +...|++++|...+++++...+. ....+.
T Consensus 173 ~~~~~~~la~~------------------------------~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~-------- 214 (373)
T 1hz4_A 173 QLQCLAMLIQC------------------------------SLARGDLDNARSQLNRLENLLGNGKYHSDWI-------- 214 (373)
T ss_dssp GHHHHHHHHHH------------------------------HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH--------
T ss_pred HHHHHHHHHHH------------------------------HHHcCCHHHHHHHHHHHHHHHhccCcchhHH--------
Confidence 223333333 45567789999999988765322 100000
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 002273 336 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAA 411 (944)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 411 (944)
......++.++...|++++|...+++++...+.. ...+..++.++...|++++|+
T Consensus 215 ---------------------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 215 ---------------------SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 0112245566889999999999999999877653 346788999999999999999
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 412 EMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 412 ~~l~~al~~~p~------~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
..+++++...+. ..+++..+|.++...|++++|...+++++.+.+.
T Consensus 274 ~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 274 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 999999887432 2358889999999999999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=181.69 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=223.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH----HHhCCHHHHH---------HHHHHHHh
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICL----QMQNMGRLAF---------DSFSEAVK 110 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~----~~~g~~~~A~---------~~~~~al~ 110 (944)
.+...+..-..+..++++++|..+++++.+..+ .+...++..+... ...+.+..+. +.++++-.
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 455666666677899999999999998866432 3444443332222 1223333233 44444322
Q ss_pred cCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 111 LDPQ-N----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 111 ~~p~-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
.... + ...++.+|..+...|++++|+..|++++++.+...+ ....+.++..+|.++...|++++|+..++++++
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111 1 235677899999999999999999999987654322 244677899999999999999999999999998
Q ss_pred hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 186 IDPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 186 ~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
..+. ...++..+|.+|...|++++|+++|+++++..+ ....++.++|.+|..+|++++|+.++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7432 255788999999999999999999999998633 124578899999999999999999999988
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 253 AVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 253 ~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
.+.... .+|....++..+|.+
T Consensus 250 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 250 KVSREK-----------------------------------------------------------VPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHHH-----------------------------------------------------------CGGGHHHHHHHHHHH
T ss_pred HHHHhh-----------------------------------------------------------CChhHHHHHHHHHHH
Confidence 742100 122235566777888
Q ss_pred HHHcCChHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 333 YGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
+...|++++|+.++++++++. +.....+..++.++...++ +.+|+.++++. ...+....++..+|.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 888888888888888888773 3334456667777777777 77777777762 22333455777888888888
Q ss_pred CCHHHHHHHHHHHHHhC
Q 002273 405 GKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~ 421 (944)
|++++|+.+|+++++..
T Consensus 350 g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 88888888888888754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-15 Score=177.69 Aligned_cols=419 Identities=7% Similarity=-0.053 Sum_probs=284.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCC--CCH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDP--QNA 116 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~ 116 (944)
..+|.+...|..++......++++.+...|++++...|.....|...+......++ ++.+...|++++...| .+.
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 45677899999999999999999999999999999999999999999999888899 9999999999999884 677
Q ss_pred HHHHHHHHHHHHcCCH----HH----HHHHHHHHHHc----CCCChhHHhHHHHHHHHHH--HHHHHcCChHHHHHHHHH
Q 002273 117 CAHTHCGILYKDEGRL----VE----AAESYHKALSA----DPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~lg--~~~~~~g~~~~A~~~~~~ 182 (944)
..|..........++. ++ ....|++++.. ++.....+........... .-+..+++.+.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888777666665543 33 44788888864 4544444333222211000 001123456778888888
Q ss_pred HHhhCCCCHH-HHHHHHHHH-------------HHcCCHHHHHHHHHHHHHh-------CCCC-----------------
Q 002273 183 ALKIDPHYAP-AYYNLGVVY-------------SELMQYDTALGCYEKAALE-------RPMY----------------- 224 (944)
Q Consensus 183 al~~~p~~~~-~~~~la~~~-------------~~~g~~~~A~~~~~~al~~-------~p~~----------------- 224 (944)
++........ .|......- ....+|+.|...+.+.-.. .|..
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8864222221 221111000 0112233333333332110 0100
Q ss_pred --HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh-HHHHHhhc-CCC---
Q 002273 225 --AEAYCNMGVIYKNRG-------DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR-ALLLFRLN-GSN--- 290 (944)
Q Consensus 225 --~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~-a~~~~~~~-~~~--- 290 (944)
...|..........+ ..+.....|++++...|.++..|...+..+...+....+. .+...... .+.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 122222222211111 1223445666666666666666666666665555433222 22211111 111
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYY-----------NWH-----------YADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
+...++.+....|++++|..+|++++.. .|. ...+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1112344556678889999999999875 243 345788899999999999999999999
Q ss_pred HHhh-CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C
Q 002273 349 AFHF-NPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---T 423 (944)
Q Consensus 349 al~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~ 423 (944)
+++. .+....+|...+.+....+ +++.|.++|+++++..|+++..+..++......|+.+.|..+|++++...| .
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9988 4455777887787777765 489999999999999999999999999999999999999999999999887 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
...+|......-...|+.+.+.+.++++++..|++..
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 5678888888889999999999999999999999764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=198.70 Aligned_cols=186 Identities=13% Similarity=0.006 Sum_probs=169.5
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVL--------EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (944)
+|.++...+..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 344555666555 78999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (944)
..+++.+|.++..+|++++|+..|+++++++|++..+ +.++|.++...|++++ +..|+++++.+|++..+++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP-------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence 9999999999999999999999999999999998775 6788888889999999 9999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
++|.++..+|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999987665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=191.18 Aligned_cols=321 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138 (944)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (944)
...|++++|.+++++. +++.+|..+|.++.+.|++++|++.|.++ .++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4567888999998887 33468899999999999999999999764 4566788888888889999999998
Q ss_pred HHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (944)
Q Consensus 139 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (944)
++.+.+..++ +. +...++.+|.+.|++.++.+.++ .|+ ..++..+|..+...|+|++|..+|.++
T Consensus 84 l~~ark~~~~-~~-------i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 84 LQMARKKARE-SY-------VETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT-
T ss_pred HHHHHHhCcc-ch-------hHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 8888775333 22 35667777888888888887774 243 358889999999999999999999876
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHH
Q 002273 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298 (944)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 298 (944)
..+..+|.++.++|++++|++.++++ +++..|.....++...+
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~------------------------- 191 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK------------------------- 191 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT-------------------------
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC-------------------------
Confidence 46788899999999999999999988 45677777666665544
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKA 376 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 376 (944)
+++.|..+... +. .+++-...+...|.+.|++++|+.++++++.+++....++..+|.+|.+- ++..+.
T Consensus 192 -----ef~lA~~~~l~-L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~eh 262 (449)
T 1b89_A 192 -----EFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 262 (449)
T ss_dssp -----CHHHHHHTTTT-TT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----cHHHHHHHHHH-HH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44666544443 11 23343445667777777777777777777777777777777777776653 456666
Q ss_pred HHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcC
Q 002273 377 VECYQMALSIKP-----NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------------NPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 377 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------------~p~~~~a~~~la~~~~~~g 439 (944)
++.|...+.+.| .....|..+..+|...++++.|+..+-+.... .+.+.+.++.....|. +
T Consensus 263 l~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~ 340 (449)
T 1b89_A 263 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--E 340 (449)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--H
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--h
Confidence 666666666555 55667777777777777777776654433221 3445666666555555 3
Q ss_pred CHHHHHHHHHHHH
Q 002273 440 SISLAIDAYEQCL 452 (944)
Q Consensus 440 ~~~eA~~~~~~al 452 (944)
+..+++..+..++
T Consensus 341 ~~p~~l~~ll~~l 353 (449)
T 1b89_A 341 FKPLLLNDLLMVL 353 (449)
T ss_dssp HCGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 3344455555555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=177.31 Aligned_cols=184 Identities=18% Similarity=0.099 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------NACAHTHCGILYKDEGRLVEAA 136 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 136 (944)
++++|+..|+++ |.++...|++++|+..|++++++.+. .+.++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56788999999999999999987432 2578999999999999999999
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 209 (944)
.+|++++++.+..... ...+.++..+|.++... |++++|+.+|++++++.|.. ..++..+|.++..+|++++
T Consensus 98 ~~~~~Al~l~~~~g~~-~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999987754332 23466789999999996 99999999999999997754 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 210 ALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
|+.+|+++++..|.+.. .+..+|.++..+|++++|+.+|+++++++|+....
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999999999887543 67899999999999999999999999999986543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=198.05 Aligned_cols=188 Identities=14% Similarity=-0.017 Sum_probs=162.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34788887777766 78899999999999999 88899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 257 NFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336 (944)
Q Consensus 257 ~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 336 (944)
++..++..++.++...+ ++++|+..|+++++.+|+++.++.++|.++...
T Consensus 465 ~~~~a~~~lg~~~~~~g------------------------------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTG------------------------------DYDSATKHFTEVLDTFPGELAPKLALAATAELA 514 (681)
T ss_dssp CCHHHHHHHHHHHHHHT------------------------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 99988888888766544 558999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (944)
|++++ +..|+++++++|++..+++++|.++...|++++|++.|+++++++|++..+++++|.++...++
T Consensus 515 g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999 9999999999999999999999999999999999999999999999999999999999877665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=176.29 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---
Q 002273 323 ADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ--- 392 (944)
Q Consensus 323 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 392 (944)
..++..+|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 45688899999996 99999999999999987654 567899999999999999999999999999887643
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 393 ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE-----AYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 393 ----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-----a~~~la~~~~--~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
++.++|.++..+|++++|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|.+...
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 6789999999999999999999999999987654 3455666664 4578999999999999998876443
Q ss_pred h
Q 002273 462 G 462 (944)
Q Consensus 462 ~ 462 (944)
.
T Consensus 277 ~ 277 (292)
T 1qqe_A 277 L 277 (292)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=159.45 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=83.6
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+...|++++|+..+++++...|+++..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34445556666666666555555555555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
+|+++++++|+++.+++++|.+|...|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666666666666666666666665554443 355666666666665555555555553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=155.22 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=157.2
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+++++++..|.+..++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|..+++++++++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q 002273 459 RNA 461 (944)
Q Consensus 459 ~~a 461 (944)
...
T Consensus 178 ~~~ 180 (186)
T 3as5_A 178 SVE 180 (186)
T ss_dssp CGG
T ss_pred hhh
Confidence 654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-18 Score=184.46 Aligned_cols=357 Identities=12% Similarity=0.062 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.+..|..+|..+.+.|++++|++.|.++ +++..+...+.++...|++++|+.+++.+.+..+ ++.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 3468999999999999999999999764 4667899999999999999999999999888544 377888999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
.+.|++.++.++++. |+. . .+..+|..+...|++++|+.+|.++ ..|..+|.++.++|+
T Consensus 105 ~Klg~l~e~e~f~~~-----pn~-~-------a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ----CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHcC-----CcH-H-------HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 999999999888752 432 1 4888999999999999999999976 478899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
|++|++.++++ .++..|.....++...|+++.|..+... +...|++. ..+.
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l---~~lv-------------------- 214 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL---EELI-------------------- 214 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH---HHHH--------------------
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH---HHHH--------------------
Confidence 99999999999 4789999999999999999999777665 33444432 1222
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCC-----CCHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM--LKFDMAIVFYELAFHFNP-----HCAEA 359 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~ 359 (944)
.+|...|.+++|+.++++++..++.+..++..+|.+|.+- ++..+.++.|...+.+.| ++...
T Consensus 215 ----------~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 215 ----------NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred ----------HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2366678889999999999999999999999999998765 467788888887777777 77889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSI------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI--AANPTYA 425 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al--~~~p~~~ 425 (944)
|..+..+|...++++.|+...-+.... .+.+.+.++.....|. ++...++..+..++ .+++
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~--- 359 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH--- 359 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH---
T ss_pred HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc---
Confidence 999999999999999999876655433 5677888888888777 55566777787777 3443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHH
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 481 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (944)
......+.+.|+..-...+++.+...+-. ..|-.+.-.|+.+.+.+.+.
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~~n~~----~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQNHNNK----SVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHTTCCH----HHHHHHHHHHHHTTCHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHhhHH----HHHHHHHHHHHhhhhHHHHH
Confidence 23445667888888888888766644322 22333444566666655443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-17 Score=164.19 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHh
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG----------------KGICLQMQNMGRLAFDSFSEAVK 110 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (944)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCC
Q 002273 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDP 188 (944)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p 188 (944)
++|+++.+++.+|.++...|++++|+..|+++++++|++..++. .+|.++...| +...+...+.+++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~-------~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI-------FLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-------HHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999988744 4444444333 34566777777654333
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
...+++.+|.++...|++++|+.+|+++++++|+
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 2346777888888889999999999999998887
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-14 Score=166.57 Aligned_cols=387 Identities=11% Similarity=-0.032 Sum_probs=276.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR---LVEAAESY 139 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 139 (944)
...+-+..|++.+..+|.+...|..++......+.++.+...|++++...|.....|...+....+.++ ++.+...|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345667788999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHcCC--CChhHHhHHHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHH---
Q 002273 140 HKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNT--------QDGIQKYYEALKI----DPHYAPAYYNLGVVYS--- 202 (944)
Q Consensus 140 ~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~--- 202 (944)
++++...| .+.+.|.. ........++. +...+.|++++.. ++....+|........
T Consensus 127 eRal~~~~~~~sv~LW~~-------Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLS-------YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHTCSSSCCCCHHHHHH-------HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCCHHHHHH-------HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999984 34444332 22222223332 3345788888864 6667777776665543
Q ss_pred ------HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-------------HHcCCHHHHHHHHHHHHHh-------C
Q 002273 203 ------ELMQYDTALGCYEKAALERPMYAE-AYCNMGVIY-------------KNRGDLESAIACYERCLAV-------S 255 (944)
Q Consensus 203 ------~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~-------------~~~g~~~~A~~~~~~al~~-------~ 255 (944)
.+++.+.+..+|++++.......+ .|......- ....+|..|...+...-.. .
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 345678899999999975223222 221111111 1112344444444432111 1
Q ss_pred CCc-----------------H--HHHHHHHHHHHHhhh------------hhhhhHHHHHhhcCCCCCchhHHHhhhcCC
Q 002273 256 PNF-----------------E--IAKNNMAIALTDLGT------------KTYGRALLLFRLNGSNFQSPFFELVKLEGD 304 (944)
Q Consensus 256 p~~-----------------~--~~~~~la~~l~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 304 (944)
|.. . ..|..........+. ..+.+++... ...+.++..++.+....++
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 111 1 122222222111110 0011111111 1122233345566777888
Q ss_pred HHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------CCC-----------CHHHHH
Q 002273 305 INQGV-AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------NPH-----------CAEACN 361 (944)
Q Consensus 305 ~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~-----------~~~~~~ 361 (944)
.++|. ..|++++...|.+...+..++......|++++|.++|++++.. .|. ...+|.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 88997 9999999999999999999999999999999999999999975 243 345788
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
..+.+..+.|+.+.|...|.+|++. .+....++...|.+....+ +++.|.++|+++++..|+++..+...+......|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 8888888899999999999999987 4455677777777777765 4899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 002273 440 SISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 440 ~~~eA~~~~~~al~l~P~ 457 (944)
+.+.|...|++++...|+
T Consensus 519 ~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISD 536 (679)
T ss_dssp CHHHHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999999999885
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-16 Score=153.55 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~ 80 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-------AT 80 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-------HH
Confidence 45566666677777777777777777766666666677777777777777777777777777766665443 55
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (944)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence 56666666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCcH
Q 002273 242 ESAIACYERCLAVSPNFE 259 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~ 259 (944)
++|+..++++++..|++.
T Consensus 161 ~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 161 EEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 777777777777766543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-16 Score=157.92 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKN 263 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 263 (944)
.+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35667778888888888888888888888877765 367788888888888888888888888888887654 556
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002273 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343 (944)
Q Consensus 264 ~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 343 (944)
.++.++...+.. ....+..++..+...|++++|+
T Consensus 83 ~~g~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------------------------------------ALQGFFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp HHHHHHHHHHC------------------------------------------------------------CCHHHHHHH
T ss_pred HHHHHHHhhhhh----------------------------------------------hhhhhhccchhhcCcHHHHHHH
Confidence 666665543321 1112334556666677888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
..|+++++..|++..+...+..+....+ ........+|.+|...|++++|+..|+++++..|+
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 8888888888877654432222111100 01223467899999999999999999999999998
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 424 YA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 424 ~~---~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++ ++++.+|.+|.++|++++|++.++++....|++.+.+
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 75 6899999999999999999999999999999876543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-15 Score=156.15 Aligned_cols=244 Identities=11% Similarity=0.024 Sum_probs=197.1
Q ss_pred HHHHHhCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 55 ANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 55 A~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.....+.|++. +|+.++++++..+|++..+|...+.++...+. +++++.++.+++..+|++..+|...+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33445677776 79999999999999999999999999988776 68999999999999999999999999
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 124 ILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 124 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.++...++ +++++.++.++++.+|.+..++ ...+.+....|. ++++++++.++++.+|.+..+|..++.+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW-------~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l 188 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCW-------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999984 8999999999999999998874 444555555677 5899999999999999999999999999
Q ss_pred HHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhC
Q 002273 201 YSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----------GDLESAIACYERCLAVS 255 (944)
Q Consensus 201 ~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~ 255 (944)
+... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 9887 5689999999999999999999998766666555 45789999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 256 p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
|++...+..++.+...+ ...+..++...++.++++++|....-|..++..
T Consensus 269 pd~~w~l~~~~~~~~~~---------------------------~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 269 PENKWCLLTIILLMRAL---------------------------DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp TTCHHHHHHHHHHHHHH---------------------------CTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhh---------------------------cccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 98855443333222111 113455677788888888888776666555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=159.26 Aligned_cols=171 Identities=17% Similarity=0.148 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH----------------CGILYKDEGRLVEAAESYHKALS 144 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 144 (944)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCC
Q 002273 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--YDTALGCYEKAALERP 222 (944)
Q Consensus 145 ~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p 222 (944)
++|++..+ +..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+++++...|
T Consensus 83 ~~p~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDC-------LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 99999775 78888889999999999999999999999999999999999987764 4566777877764333
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
. ..+++.+|.++...|++++|+..|+++++++|+..
T Consensus 156 ~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 156 M-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp H-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred h-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 2 34678899999999999999999999999999853
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=170.35 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=131.7
Q ss_pred hCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhHHhHHHHHHH
Q 002273 95 QNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLT 161 (944)
Q Consensus 95 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~ 161 (944)
.|++++|+..|+++++. +|....++..+|.++...|++++|+..|+++++.. ++.+. .+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----VAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHH
Confidence 45556666666666552 24556788889999999999999999999988774 33332 356789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYA 225 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 225 (944)
.+|.++...|++++|+..|+++++. +|....++..+|.+|...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999988 4667889999999999999999999999999998 66677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 226 EAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
.++..+|.++...|++++|+..++++++.
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999986
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=156.49 Aligned_cols=189 Identities=13% Similarity=0.049 Sum_probs=159.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AHT 120 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (944)
++..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56789999999999999999999999999999876 479999999999999999999999999999999864 789
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 121 HCGILYKD------------------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 121 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
.+|.++.. .|++++|+..|+++++.+|++..+... +..++.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a----~~~l~~~~~~------------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA----TKRLVFLKDR------------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH----HHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH----HHHHHHHHHH-------------
Confidence 99999876 679999999999999999998765322 1112111100
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
.......+|.+|...|++++|+..|+++++..|+++ +++..+|.++..+|++++|++.++++....|++.
T Consensus 146 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 112346788999999999999999999999998875 6789999999999999999999999888888754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=155.68 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH
Q 002273 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (944)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (944)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|++..+ +..+|.++.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-------~~~lg~~~~ 76 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-------HRFLGLLYE 76 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444444332 344444444
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC-YEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
..|++++|+..|+++++++|+++.+++.+|.+|...|++++|.+. ++++++++|+++.++..++.++...|
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444444454555555555555555554443333 24455555555555544444444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-14 Score=152.50 Aligned_cols=173 Identities=11% Similarity=0.068 Sum_probs=146.8
Q ss_pred HcCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 169 LAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 169 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..|.+. +|+..+.+++..+|++..+|+..+.++...+. +++++.++++++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 456654 89999999999999999999999999988776 7899999999999999999999999999999
Q ss_pred cCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 238 RGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 238 ~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
.++ +++++.++.++++.+|.+..+|...+.++..++. .++++++++.++
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-----------------------------~~~eel~~~~~~ 171 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-----------------------------APAEELAFTDSL 171 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------------------------CHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-----------------------------CHHHHHHHHHHH
Confidence 994 8999999999999999999999999988776553 148899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 316 LYYNWHYADAMYNLGVAYGEM--------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 172 I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 172 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998877 3456666666666666666666666554444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=168.45 Aligned_cols=222 Identities=19% Similarity=0.244 Sum_probs=166.6
Q ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 002273 204 LMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAI 267 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 267 (944)
.|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++++.. |....++..++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555555555555542 24456677788888888888888888888887763 333445555555
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCh
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKF 339 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~ 339 (944)
++ ...|++++|+.++++++.. +|....++..+|.++...|++
T Consensus 94 ~~------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 94 LY------------------------------GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HH------------------------------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HH------------------------------HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 54 4456779999999999987 466678999999999999999
Q ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHH
Q 002273 340 DMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYT 402 (944)
Q Consensus 340 ~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~ 402 (944)
++|+.+++++++. .|....++..+|.++...|++++|+.++++++++ .+.....+..++..+.
T Consensus 144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 9999999999998 6666889999999999999999999999999987 4445567777777776
Q ss_pred HcCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 403 VQGKM------DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 403 ~~g~~------~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
..+.. .++...++......|....++..+|.+|...|++++|+.+|++++++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp TTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 65543 334444443333456667899999999999999999999999999864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=143.75 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=78.1
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 350 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
..++|+.++.+.++|..+++.|++++|++.|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++..+++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
++|.++..+|++++|++.|+++++++|++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 666666666666666666666666666666665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-16 Score=142.89 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=115.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 002273 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394 (944)
Q Consensus 315 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 394 (944)
+..++|+.++.+..+|..+++.|++++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 395 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
+++|.++..+|++++|++.|+++++++|++.+++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998874
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-14 Score=149.71 Aligned_cols=189 Identities=11% Similarity=0.022 Sum_probs=151.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-G 239 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g 239 (944)
.+.......+..++|++.+.+++..+|++..+|+..+.++...+ .+++++..+++++..+|++..+|...+.++... +
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 33344455566789999999999999999999999999999999 599999999999999999999999999999998 8
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh
Q 002273 240 -DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY 318 (944)
Q Consensus 240 -~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~ 318 (944)
+++++++++.++++.+|.+..+|.....++..++..... ....+.+++++++++++.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~----------------------~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI----------------------SEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC----------------------CHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc----------------------chhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887754100 001124777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 002273 319 NWHYADAMYNLGVAYGEMLK-------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 372 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (944)
+|.+..+|...+.++...++ ++++++++++++..+|++..+|+.+..++...|+
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777765 5666666666666666666666666666655554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=154.06 Aligned_cols=243 Identities=10% Similarity=0.009 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.++..+..+....+..++|++++++++..+|++..+|+..+.++...+ .+++++..+++++..+|++..+|.....++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344444455555666789999999999999999999999999999999 5999999999999999999999999998887
Q ss_pred Hh-hhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------H
Q 002273 271 DL-GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--------M 341 (944)
Q Consensus 271 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~ 341 (944)
.+ + .++++++++++++++.+|.+..+|...+.+....+.++ +
T Consensus 135 ~l~~-----------------------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 135 RISP-----------------------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHCC-----------------------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcC-----------------------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 65 3 03489999999999999999999999999999998888 9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-------
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM------- 407 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------- 407 (944)
++++++++++.+|.+..+|...+.++...++ ++++++++++++.++|++..+|+.+..++...|+.
T Consensus 186 ELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 186 ELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 9999999999999999999999999999887 79999999999999999999999999999887764
Q ss_pred -------------HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChhhhh
Q 002273 408 -------------DAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KIDPDSRNAGQ 463 (944)
Q Consensus 408 -------------~~A~~~l~~al~~~------p~~~~a~~~la~~~~~~g~~~eA~~~~~~al-~l~P~~~~a~~ 463 (944)
.+-.+.....+... +..+.++..|+.+|...|+.++|.++|+... +.||-..+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 22222222222222 4668899999999999999999999999987 67886554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-16 Score=148.71 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=107.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
..+++++.++|+++.+++.+|.++...|++++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999865
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=149.09 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+| ++..+..++.+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~-- 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL-- 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH--
Confidence 4555555555555555555555555555555555555555555555555555555555555555 4443333222211
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (944)
...+...+|+..++++++.+|++..+++.+|.++...|++++
T Consensus 85 --------------------------------------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 85 --------------------------------------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp --------------------------------------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Confidence 011122335666666666666666667777777777777777
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 210 ALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 210 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
|+..|+++++.+|+. ..++..++.++...|+.++|+..|++++.
T Consensus 127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 777777776666654 44666667777777777777777666654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-15 Score=156.81 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=156.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~------ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY------ 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH------
Confidence 48889999999999999999999999999999999999999999999999999999999999999999995432
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIY 235 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 235 (944)
.....+..+...++.++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++
T Consensus 187 -~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 -QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 244556667778889999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLA 253 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~ 253 (944)
...|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=149.04 Aligned_cols=156 Identities=14% Similarity=0.007 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..| +.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----------- 73 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----------- 73 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-----------
Confidence 344566666666666666666666666666666666666666666666666666666666666555 32
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
..+..++.+. ...++..+|+..++++++.+|+++.+++.+|.++...|+
T Consensus 74 ------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 74 ------------------------------SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 2222222221 122233458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhhhhhhhh
Q 002273 241 LESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~ 279 (944)
+++|+..|+++++.+|+. ..++..++.++...|+...+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999999986 558999999999998875443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=160.69 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------ 390 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 390 (944)
..++..+|.+|...|++++|+.+|++++++.+. + ..++.++|.+|.. |++++|+.+|++++++.+..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 346778889999999999999999999887432 1 4678899999988 99999999999999887643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
..++.++|.+|..+|++++|+.+|++++++.|++ ..++..+|.++..+|++++|+.+|++++ ++|+......
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 5688999999999999999999999999986543 3478889999999999999999999999 9998766543
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=163.19 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=210.6
Q ss_pred cEEEeecCCCccC-cHHHHHHhhhhhccCCcEEEEEEeccccC-----Chh--hHHHHHHHhhhCCceEeccCCCHHHHH
Q 002273 511 LVIGYVSPDYFTH-SVSYFIEAPLVYHDYQNYKVVVYSAVVKA-----DAK--TIRFREKVMKKGGIWRDIYGIDEKKVA 582 (944)
Q Consensus 511 lriGy~S~d~~~h-~v~~~~~~~l~~~d~~~fev~~y~~~~~~-----d~~--t~~~~~~~~~~~~~~~~~~~~~~~~~a 582 (944)
.||.++++.+-.. -+..++..+...+... .+|.+++..... ... ........ . +.....+....+.
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~ 74 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV----R-GLNEQGFYYSGLS 74 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH----T-TCCSTTCCHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc----c-ccccccchHHHHH
Confidence 3678887654321 2344555555555555 777777643221 000 11111111 1 2222245567789
Q ss_pred HHhHhCCccEEEecCCCCCC-CchhhhccCC--cceeeecccCCCC------CCCCC--ccEEEecCCCCCccccccc-c
Q 002273 583 AMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQVTWIGYPNT------TGLPT--IDYRITDSLADPPETKQKH-V 650 (944)
Q Consensus 583 ~~i~~d~idilvdl~g~t~~-~~~~~~a~r~--ApvQ~~~~G~p~t------~g~~~--~Dy~i~d~~~~p~~~~~~~-~ 650 (944)
+.|+..++||++--.-.... ..+..+...| -++-..|-..... .-+.. +|.+|+-.-..-.....+. .
T Consensus 75 ~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~ 154 (413)
T 3oy2_A 75 EFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYGCK 154 (413)
T ss_dssp HHHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHHHHHTTCC
T ss_pred HHHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHHHHHcCCC
Confidence 99999999999754100000 0000011111 1112222111111 11223 3366653211111111222 4
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCC--CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCC--H
Q 002273 651 EELIRLPECFLCYTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--D 724 (944)
Q Consensus 651 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~ 724 (944)
+++..+|+.. ++... ...+...++++ +.++|+++++. .|..+.++++|.++.+..|+.+|+++|.+... .
T Consensus 155 ~~~~vi~ngv---d~~~~-~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~ 230 (413)
T 3oy2_A 155 VPINIVSHFV---DTKTI-YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKF 230 (413)
T ss_dssp SCEEECCCCC---CCCCC-TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSC
T ss_pred CceEEeCCCC---CHHHH-HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchh
Confidence 6777777542 11111 11222234555 67889999876 99999999999999999999999999865321 2
Q ss_pred HHHHHHHHHHHHcCCCCCc-------EEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcc
Q 002273 725 SVRHRFLSTLEQLGLESLR-------VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 796 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~r-------v~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~ 796 (944)
.....+++.+++.|++ ++ |.|.|.++ .++....|+.+|+++-|..+ +.|.+.+|||++|+|||+
T Consensus 231 ~l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~-~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~------ 302 (413)
T 3oy2_A 231 DLHSIALRELVASGVD-NVFTHLNKIMINRTVLT-DERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII------ 302 (413)
T ss_dssp CHHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCC-HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEE------
T ss_pred hHHHHHHHHHHHcCcc-cccccccceeeccCcCC-HHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEE------
Confidence 2557888888999994 66 77888877 68899999999999888866 889999999999999999
Q ss_pred cccchhHHHhhc--------------------CCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002273 797 AHNVGVSLLTKV--------------------GLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQ 855 (944)
Q Consensus 797 ~~r~~~~~l~~~--------------------gl~~~v~-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~ 855 (944)
+++|+ +-..+ |+..++. .|++++.+.. ++..|++.+.++++..++... ..|+++
T Consensus 303 -s~~~g-~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~--~~fs~~ 377 (413)
T 3oy2_A 303 -SAVGG-ADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVK--TKPTWD 377 (413)
T ss_dssp -ECCHH-HHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHT--TSCCHH
T ss_pred -cCCCC-hHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH--HhCCHH
Confidence 66652 11111 2222333 5999999999 999999999999999998874 349999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002273 856 NFALGLESTYRNMWHR 871 (944)
Q Consensus 856 ~~~~~~e~~~~~~~~~ 871 (944)
.+++.++++|+++..+
T Consensus 378 ~~~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 378 DISSDIIDFFNSLLRV 393 (413)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=156.90 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=134.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (944)
..|++++|.++++++.+..+.. ++. .+++++|+..|.++ |.+|...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4578899999999998876642 122 58899999988876 5678899999999999
Q ss_pred HHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 002273 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALG 212 (944)
Q Consensus 139 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~ 212 (944)
|.+++++.+.... ....+.++.++|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+.
T Consensus 59 ~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9999988765433 2345677888999999999999999999999887432 24577888888888 88888888
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 213 CYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 213 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (944)
+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.+.+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 888888876542 467778888888888888888888888776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=154.03 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=128.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++.++|+..|+
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 45668888888888888888888888888888888888888888888888888766666677777777888888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ..++.+++.++...|+.++|...|++++.
T Consensus 210 ~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 210 QQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888887 78888888888888888888888888765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=169.55 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (944)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (944)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 002273 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA 217 (944)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 217 (944)
++++.+|++... +..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|++.++++
T Consensus 82 ~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGI-------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999987654 677888888889999999999999999999999999999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 002273 218 ALERPMYAEAYCNMG 232 (944)
Q Consensus 218 l~~~p~~~~~~~~la 232 (944)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999988777766655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=155.86 Aligned_cols=221 Identities=10% Similarity=0.005 Sum_probs=177.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhh
Q 002273 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-------AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300 (944)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 300 (944)
++..|.-+ ..+++.+|.+.|.+++..+|+..++|..+ +.++..+...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~------------------------- 63 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS------------------------- 63 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHT-------------------------
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHH-------------------------
Confidence 33444444 57888899999999999999999988888 6677666655
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 301 LEGDINQGVAYYKKALYYNWHY---------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359 (944)
Q Consensus 301 ~~~~~~~A~~~~~~al~~~p~~---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (944)
.+++..+++.+.+.|.. .++...++.++...|++++|.+.|+.++...|.+. .
T Consensus 64 -----~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~ 137 (282)
T 4f3v_A 64 -----RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V 137 (282)
T ss_dssp -----GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H
T ss_pred -----HHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H
Confidence 55666666666654432 35666789999999999999999999999999888 9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVL 434 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~-~~~a~~~la~~ 434 (944)
.+.+|.++.+.+++++|+.+|+++.+..+.. ..+++++|.++..+|++++|+.+|++++... |. ..++++++|.+
T Consensus 138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 138 AWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMA 217 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 9999999999999999999999887653221 3589999999999999999999999998654 55 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
+.++|+.++|...|++++..+|+ ..+.. .+....|....+..+.++
T Consensus 218 L~~lGr~deA~~~l~~a~a~~P~-~~~~~-aL~~~~~~~~~t~~~~i~ 263 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTTHPE-PKVAA-ALKDPSYRLKTTTAEQIA 263 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSCC-HHHHH-HHHCTTCCCCCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-HHHHH-HHhCCCCCCCCCcHHHHH
Confidence 99999999999999999999999 55544 345556655555555443
|
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-13 Score=151.66 Aligned_cols=336 Identities=12% Similarity=0.095 Sum_probs=213.7
Q ss_pred CCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChh--hHHHHHHHhhhCCceEeccCCCH--------
Q 002273 509 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAK--TIRFREKVMKKGGIWRDIYGIDE-------- 578 (944)
Q Consensus 509 ~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~--t~~~~~~~~~~~~~~~~~~~~~~-------- 578 (944)
++.||.+++..+..--+...+..+.......+++|.++......+.. ...+...+. +. ....+..
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~ 113 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQ---GN--ESLKLTEEMKELYLN 113 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHT---TC--CSCCCCHHHHHHHHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeec---cc--ccccccHHHHHHHHH
Confidence 45789999888644344455555555555567888777654321111 111111111 00 0111221
Q ss_pred --HHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC----------CCCccEEE-ecCCCCCccc
Q 002273 579 --KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG----------LPTIDYRI-TDSLADPPET 645 (944)
Q Consensus 579 --~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g----------~~~~Dy~i-~d~~~~p~~~ 645 (944)
..+.+.|+..++||++--+.++. .+..++.+-.|+-++.-+...... +...|.+| +. ....
T Consensus 114 ~~~~~~~~l~~~~~Dvv~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~----s~~~ 187 (416)
T 2x6q_A 114 VNRENSKFIDLSSFDYVLVHDPQPA--ALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHL----PEYV 187 (416)
T ss_dssp HHHHHHHSSCGGGSSEEEEESSTTG--GGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESS----GGGS
T ss_pred HHHHHHHHHhhcCCCEEEEeccchh--hHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEec----hHHH
Confidence 13455667779999976443332 122222333677666544332111 12345544 22 1122
Q ss_pred ccccc-cceEEcCCCccccCCCCCCC-CC--------CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce
Q 002273 646 KQKHV-EELIRLPECFLCYTPSPEAG-PV--------CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 713 (944)
Q Consensus 646 ~~~~~-e~~~~lp~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 713 (944)
...+. +++..+|+.. ++....+ +. +...+++.+.++++++++. .|..+.++++|..+.+..|+.+
T Consensus 188 ~~~~~~~~~~vi~ngv---d~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~ 264 (416)
T 2x6q_A 188 QPELDRNKAVIMPPSI---DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQ 264 (416)
T ss_dssp CTTSCTTTEEECCCCB---CTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCE
T ss_pred HhhCCccceEEeCCCC---ChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeE
Confidence 22333 6777888642 1111100 00 0122455666677777754 7899999999999999999999
Q ss_pred EEEecCCCC-CHHHHHHHHHHHHHcCCCCCcEEEccCccC--cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEE
Q 002273 714 LVVKCKPFC-CDSVRHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 789 (944)
Q Consensus 714 l~~~~~~~~-~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~--~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvv 789 (944)
|+++|.+.. ++..+..+.+..++.|+ .++|.|+|.++. ..+....|+.+|+++-|..+ +.|++.+|||++|+|||
T Consensus 265 l~i~G~g~~~~~~~~~~l~~~~~~~~~-~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI 343 (416)
T 2x6q_A 265 LLLVGVMAHDDPEGWIYFEKTLRKIGE-DYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVI 343 (416)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHHTT-CTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEE
T ss_pred EEEEecCcccchhHHHHHHHHHHHhCC-CCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEE
Confidence 999987632 23456677888888999 589999986542 35788889999999888766 77999999999999999
Q ss_pred ecCCCcccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 790 TMAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 790 t~~g~~~~~r~~~-~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
+ +++++ .-+-.-|-..++..|.+++.+...++.+|++.++++++..++...+. |+++.+++.+++.|+++
T Consensus 344 ~-------~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 344 G-------RAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKN--FIITKHMERYLDILNSL 414 (416)
T ss_dssp E-------ESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHTC
T ss_pred E-------ccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHh
Confidence 9 55542 11111144556666999999999999999999999999998877544 89999999999999864
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-15 Score=141.22 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 002273 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387 (944)
Q Consensus 308 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 387 (944)
+-..++++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++...|++++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
|+++.+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999864
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=138.40 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=109.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
-..|++++.++|++...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 423 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
+++.+++++|.+|..+|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999999877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-15 Score=151.48 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCH----
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-------GICLQMQNMGRLAFDSFSEAVKLDPQNA---- 116 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~---- 116 (944)
...+|..|.-+ ..+++.+|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 45677788876 68999999999999999999999999999 8999999999999999999999877543
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHH
Q 002273 117 -----------------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (944)
Q Consensus 117 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (944)
.+...++.++...|++++|.+.|+.++...|++. +.+.+|.++.+.+++++|+..
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~--------~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL--------VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH--------HHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH--------HHHHHHHHHHHcCCHHHHHHH
Confidence 3445588999999999999999999988777543 367788899999999999999
Q ss_pred HHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 180 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 180 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
|+++.+..+.. ..+++.+|.++..+|++++|+.+|++++... |. ..++++.+|.++..+|+.++|...|++++..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99877653221 4589999999999999999999999998644 55 6679999999999999999999999999999
Q ss_pred CCCcHHHHHHH
Q 002273 255 SPNFEIAKNNM 265 (944)
Q Consensus 255 ~p~~~~~~~~l 265 (944)
+|+ ..+...+
T Consensus 238 ~P~-~~~~~aL 247 (282)
T 4f3v_A 238 HPE-PKVAAAL 247 (282)
T ss_dssp SCC-HHHHHHH
T ss_pred CCc-HHHHHHH
Confidence 999 6665544
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-15 Score=164.08 Aligned_cols=335 Identities=13% Similarity=0.076 Sum_probs=208.6
Q ss_pred CCcEEEeecCCCccC--cHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCC-------CHH
Q 002273 509 RPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------DEK 579 (944)
Q Consensus 509 ~~lriGy~S~d~~~h--~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~-------~~~ 579 (944)
++.||.++++.|..+ .+...+..+...+. +.+|++++....... ...+... ..-....+... ...
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~--g~~v~v~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 76 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQD--PESIVVFASTQNAEE-AHAYDKT---LDYEVIRWPRSVMLPTPTTAH 76 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTSC--GGGEEEEEECSSHHH-HHHHHTT---CSSEEEEESSSSCCSCHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHhc--CCeEEEEECCCCccc-hhhhccc---cceEEEEccccccccchhhHH
Confidence 357899999877643 23455555666553 456666655432211 1112111 11112222211 135
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhc-cCCcc-eeeecccCCCCCC------------CCCccEEEecCCCCCccc
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMA-CQPAP-VQVTWIGYPNTTG------------LPTIDYRITDSLADPPET 645 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a-~r~Ap-vQ~~~~G~p~t~g------------~~~~Dy~i~d~~~~p~~~ 645 (944)
.+.+.|+..++||++--... ....+..++ ....| +-.++-|+..... +...|.+|+-.-..-...
T Consensus 77 ~l~~~~~~~~~Dvv~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 155 (394)
T 3okp_A 77 AMAEIIREREIDNVWFGAAA-PLALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRF 155 (394)
T ss_dssp HHHHHHHHTTCSEEEESSCT-TGGGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCcc-hHHHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHH
Confidence 78899999999999832211 111122111 22334 5445555422111 123566664311000001
Q ss_pred cccc--ccceEEcCCCccccCCCCCCC-------CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceE
Q 002273 646 KQKH--VEELIRLPECFLCYTPSPEAG-------PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 714 (944)
Q Consensus 646 ~~~~--~e~~~~lp~~~~~~~~~~~~~-------~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l 714 (944)
...+ .+++..+|+.. ++....+ ..+...+++++.++++.+++. .|..+.++++|.++....|+.+|
T Consensus 156 ~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l 232 (394)
T 3okp_A 156 KSAFGSHPTFEHLPSGV---DVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQL 232 (394)
T ss_dssp HHHHCSSSEEEECCCCB---CTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEE
T ss_pred HHhcCCCCCeEEecCCc---CHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEE
Confidence 1112 35777788632 1111111 011123456676778877765 89999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC--------CCcccHHHhhhcCC
Q 002273 715 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--------AGTTTTCESLYMGV 786 (944)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--------~~~~t~~eal~~gv 786 (944)
+++|.+ .....+++.+ .|+ .++|.|.|.++ ..+....|..+|+++-|..+ +.|++.+|||++|+
T Consensus 233 ~i~G~g----~~~~~l~~~~--~~~-~~~v~~~g~~~-~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~ 304 (394)
T 3okp_A 233 LIVGSG----RYESTLRRLA--TDV-SQNVKFLGRLE-YQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGV 304 (394)
T ss_dssp EEECCC----TTHHHHHHHT--GGG-GGGEEEEESCC-HHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTC
T ss_pred EEEcCc----hHHHHHHHHH--hcc-cCeEEEcCCCC-HHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCC
Confidence 999875 3445555554 666 48999999987 68999999999999988864 66899999999999
Q ss_pred cEEecCCCcccccchhHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 787 PCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 787 Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
|||+-....+..-+ .-| ..++.. |.+++++...++..|++.+.++++..++...+. |+++.+++.++++
T Consensus 305 PvI~~~~~~~~e~i------~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~ 375 (394)
T 3okp_A 305 PVIAGTSGGAPETV------TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAE--WSWEIMGERLTNI 375 (394)
T ss_dssp CEEECSSTTGGGGC------CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHH
T ss_pred CEEEeCCCChHHHH------hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHH
Confidence 99993322221111 113 444444 999999999999999999999999999887543 8999999999999
Q ss_pred HHHHHH
Q 002273 865 YRNMWH 870 (944)
Q Consensus 865 ~~~~~~ 870 (944)
|+++-+
T Consensus 376 ~~~~~r 381 (394)
T 3okp_A 376 LQSEPR 381 (394)
T ss_dssp HHSCCC
T ss_pred HHHhcc
Confidence 987543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=127.09 Aligned_cols=135 Identities=41% Similarity=0.645 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
.+++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.|++++|+..++++++..|.+..++..+|.++...|++++|...|+++++.+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999999863
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=150.94 Aligned_cols=197 Identities=11% Similarity=-0.004 Sum_probs=164.2
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..+..++.+|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
+..+|++++|+..|+++++++|++............. ..++...........+.+..+...++.++ .|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----------IAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 9999999999999999999998764332211111111 12223333334456777778877777765 68
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (944)
++++|++.++++++.+|.+......++.++... +.+++|.+.|.++.+.
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999888888888777776 7788999999888664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=137.32 Aligned_cols=177 Identities=15% Similarity=0.015 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 002273 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG----RLVEAAESYH 140 (944)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (944)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3678899999876 78999999999999999999999999999875 588999999999998 7 9999999999
Q ss_pred HHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 002273 141 KALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE----LMQYDTA 210 (944)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A 210 (944)
++.+. .+.. +++.+|.++.. .+++++|+.+|+++.+..+ .++.+++.||.+|.. .+++++|
T Consensus 78 ~A~~~--g~~~-------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEA--GSKS-------GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHT--TCHH-------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHC--CCHH-------HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99764 4444 46778888877 8899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNR-G-----DLESAIACYERCLAVSP 256 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p 256 (944)
+.+|+++++. +.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66788999999999874 3 89999999999998753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-15 Score=166.12 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=167.6
Q ss_pred hCCCHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 60 SRNKFVDALALYEI----VLEKDSGNVEAHIGKGICLQ------------MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 60 ~~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
..+.+++|+..++. ++...|+. ++..+|.... .++++++|+..++++++.+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578899998888 88888876 4555554432 567788899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCh--------hHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (944)
.+++..|++++|+..|++++++.|++. ......+.++.++|.++...|++++|+..|+++++++|++..+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999873 122233557899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAV 254 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 254 (944)
.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5567776643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-13 Score=136.12 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----CCCHH
Q 002273 305 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLD 374 (944)
Q Consensus 305 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~ 374 (944)
+++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .++++
T Consensus 69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444432 2345555555555554 5566666666666665555 235566666666665 55666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 002273 375 KAVECYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 420 (944)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~l~~al~~ 420 (944)
+|+.+|+++.+. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 147 ~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 147 KASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666666655 44455666666665543 2 566666666666555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=136.94 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=114.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 002273 309 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388 (944)
Q Consensus 309 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 388 (944)
-..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|+++++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 389 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 389 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
+++.+++++|.++..+|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999998876553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=158.90 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVI 366 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 366 (944)
.+++++|+..+++++...|..+.++..+|.++...|++++|+..|+++++++|.+ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888889999999999999999999999999999999998 6999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-H
Q 002273 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-I 445 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA-~ 445 (944)
+...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHhh
Q 002273 446 DAYEQCLKI 454 (944)
Q Consensus 446 ~~~~~al~l 454 (944)
..|++++..
T Consensus 286 ~~~~~~~~~ 294 (336)
T 1p5q_A 286 KLYANMFER 294 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 577777654
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=158.20 Aligned_cols=331 Identities=13% Similarity=0.082 Sum_probs=210.5
Q ss_pred CCCCCcEEEeecCCCccC--cHHHHHHhhhhhccCCcEEEEEEeccccCChhh---------HHHHHHHhhhCCceEecc
Q 002273 506 DPERPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT---------IRFREKVMKKGGIWRDIY 574 (944)
Q Consensus 506 ~~~~~lriGy~S~d~~~h--~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t---------~~~~~~~~~~~~~~~~~~ 574 (944)
...++.+|.++++.+... .+...+..+........++|++++......... .++.. . ..+.. .
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~ 89 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPY--N---GSVAR-L 89 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC-----------------
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccc--c---CCccc-c
Confidence 345678999999776443 223455556565555678898887654332100 00000 0 00000 0
Q ss_pred CCC---HHHHHHHhHhCCccEEEecCCCCCCCchhhhccC--CcceeeecccCCCCC------------CCCCccEEEec
Q 002273 575 GID---EKKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTT------------GLPTIDYRITD 637 (944)
Q Consensus 575 ~~~---~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~G~p~t~------------g~~~~Dy~i~d 637 (944)
.+. ...+.+.|+..++||++--..+.... ..++.| -.|+-++.-+..... -+...|.+|+-
T Consensus 90 ~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 167 (406)
T 2gek_A 90 RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAV 167 (406)
T ss_dssp -CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH--HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEES
T ss_pred cccHHHHHHHHHHHHhcCCCEEEECCccchHH--HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEEC
Confidence 111 25688888889999998655444322 222222 467766665543221 12456776653
Q ss_pred CCCCCccccccc-ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCC
Q 002273 638 SLADPPETKQKH-VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPN 711 (944)
Q Consensus 638 ~~~~p~~~~~~~-~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~ 711 (944)
.-..-......| .+++ .+|+..-. |.+.. ....++++.++++++++. .|..+.++++|.++.+..|+
T Consensus 168 s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~------~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~ 240 (406)
T 2gek_A 168 SDLARRWQMEALGSDAV-EIPNGVDVASFADAP------LLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPD 240 (406)
T ss_dssp SHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCC------CCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHhcCCCcE-EecCCCChhhcCCCc------hhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCC
Confidence 211000011122 3456 77753210 22221 112333345567777766 79999999999999999999
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC--CCCCcccHHHhhhcCCcEE
Q 002273 712 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF--PYAGTTTTCESLYMGVPCV 789 (944)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~--~~~~~~t~~eal~~gvPvv 789 (944)
.+|+++|.+. . ..+++.++++ .++|.|.|.++ ..+....|..+||+|-|. ..+.|++.+|||++|+|||
T Consensus 241 ~~l~i~G~~~----~-~~l~~~~~~~---~~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI 311 (406)
T 2gek_A 241 VEILIVGRGD----E-DELREQAGDL---AGHLRFLGQVD-DATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVV 311 (406)
T ss_dssp CEEEEESCSC----H-HHHHHHTGGG---GGGEEECCSCC-HHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEE
T ss_pred eEEEEEcCCc----H-HHHHHHHHhc---cCcEEEEecCC-HHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEE
Confidence 9999998762 2 5666666655 58999999987 578899999999999885 4477999999999999999
Q ss_pred ecCCCcccccchhH-HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 790 TMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 790 t~~g~~~~~r~~~~-~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+ +++++. -+-.-|-..+++ .|.+++++...++.+|++.+.++++..++... .|+++.++..++++|+
T Consensus 312 ~-------~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~ 381 (406)
T 2gek_A 312 A-------SDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYE 381 (406)
T ss_dssp E-------CCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHH
T ss_pred E-------ecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Confidence 9 555411 111123445555 79999999999999999999999999988864 4999999999999999
Q ss_pred HHHH
Q 002273 867 NMWH 870 (944)
Q Consensus 867 ~~~~ 870 (944)
++..
T Consensus 382 ~~~~ 385 (406)
T 2gek_A 382 TVSG 385 (406)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=132.85 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
..|++++..+|++...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
++.+++.+|.+|..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999888776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-14 Score=147.97 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..+..+|..+...|++++|+..|+++++.+|++..+++++|.+|...|++++|+..++++++.+|++..+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCc
Q 002273 238 RGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~ 258 (944)
+|++++|+..|+++++++|++
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-13 Score=133.97 Aligned_cols=134 Identities=16% Similarity=0.288 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
..++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|+++++.+|++..+++++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 356789999999999999999999986 33 689999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 404 QGKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~----------------~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.|++++|+..|+++++..|++. .+++++|.++...|++++|++.|+++++++|++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 9999999999999999888766 99999999999999999999999999999998743
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=131.92 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++.+++++|.++..+|++++|+..|+++++++|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555444443
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-14 Score=158.36 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=177.1
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC----CcceeeecccCCC-CCC------------CCCccEEEecCCCC
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIGYPN-TTG------------LPTIDYRITDSLAD 641 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r----~ApvQ~~~~G~p~-t~g------------~~~~Dy~i~d~~~~ 641 (944)
..+.+.|+..++||++--.++.. .-...++.+ -.|+-++.-|... ..+ +...|.+|+-.-..
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 167 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPH-AICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSL 167 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTH-HHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcchhHH-HHHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHH
Confidence 45778888999999975333221 112223322 3777666655211 011 12356666421100
Q ss_pred Cccccccc--ccceEEcCCCccccCCCCCCCCC----CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce
Q 002273 642 PPETKQKH--VEELIRLPECFLCYTPSPEAGPV----CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 713 (944)
Q Consensus 642 p~~~~~~~--~e~~~~lp~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 713 (944)
-......+ .+++..+|+.. ++....+.. +...+++++.++++++++. .|..+.++++|.++... ++.+
T Consensus 168 ~~~~~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~ 243 (394)
T 2jjm_A 168 INETHELVKPNKDIQTVYNFI---DERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAK 243 (394)
T ss_dssp HHHHHHHTCCSSCEEECCCCC---CTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCE
T ss_pred HHHHHHhhCCcccEEEecCCc---cHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCE
Confidence 00011112 36778888642 111111110 1123344566677777765 79999999999998877 6789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecC
Q 002273 714 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~ 792 (944)
|+++|.+ .....+++.++++|+ .++|.|.|. ..+....|..+|+++-|+.+ +.|++.+|||++|+|||+
T Consensus 244 l~i~G~g----~~~~~l~~~~~~~~l-~~~v~~~g~---~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~-- 313 (394)
T 2jjm_A 244 LLLVGDG----PEFCTILQLVKNLHI-EDRVLFLGK---QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIG-- 313 (394)
T ss_dssp EEEECCC----TTHHHHHHHHHTTTC-GGGBCCCBS---CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEE--
T ss_pred EEEECCc----hHHHHHHHHHHHcCC-CCeEEEeCc---hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEE--
Confidence 9999865 346778888899999 589999996 35677888999999988866 779999999999999999
Q ss_pred CCcccccchhHHHhhcCCcc--------ccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 793 GSVHAHNVGVSLLTKVGLKH--------LIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 793 g~~~~~r~~~~~l~~~gl~~--------~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
++++ |++| ++. .|.+++++...++.+|++.+.++++..++...+. |+++.+++.++
T Consensus 314 -----~~~~-------~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 379 (394)
T 2jjm_A 314 -----TRVG-------GIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQ--FRSEKIVSQYE 379 (394)
T ss_dssp -----ECCT-------TSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred -----ecCC-------ChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 5554 3333 333 3999999999999999999999999998876434 89999999999
Q ss_pred HHHHHHHHHHhcC
Q 002273 863 STYRNMWHRYCKG 875 (944)
Q Consensus 863 ~~~~~~~~~~~~~ 875 (944)
++|+++..+...|
T Consensus 380 ~~~~~~~~~~~~~ 392 (394)
T 2jjm_A 380 TIYYDVLRDDKNG 392 (394)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHHhhhhcc
Confidence 9999987765544
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=157.91 Aligned_cols=184 Identities=10% Similarity=0.065 Sum_probs=145.3
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc-eEEEecCCCCC--------HHH---HHHHHHHHHHcCCCCCc
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNS-RLVVKCKPFCC--------DSV---RHRFLSTLEQLGLESLR 743 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~--------~~~---~~~~~~~~~~~gi~~~r 743 (944)
++++.++++++++. .|..+.++++|..+.+..|+. +|+++|...+. ... .+.+++.++++|+ .++
T Consensus 258 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l-~~~ 336 (499)
T 2r60_A 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDC-RGK 336 (499)
T ss_dssp GGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTC-BTT
T ss_pred cCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCC-Cce
Confidence 44566678888865 899999999999998887776 67777652111 112 7889999999999 589
Q ss_pred EEEccCccCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh-HHHhhcCCccccc--
Q 002273 744 VDLLPLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA-- 815 (944)
Q Consensus 744 v~~~~~~~~~~~~~~~~~~~----Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~-~~l~~~gl~~~v~-- 815 (944)
|.|+|.++ ..+....|+.+ ||++-|..+ +.|.+.+|||++|+|||+ +++|+ .-+-.-|-..++.
T Consensus 337 V~~~G~v~-~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~-------s~~~g~~e~v~~~~~g~l~~~ 408 (499)
T 2r60_A 337 VSMFPLNS-QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVV-------TRNGGPAEILDGGKYGVLVDP 408 (499)
T ss_dssp EEEEECCS-HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEE-------ESSBHHHHHTGGGTSSEEECT
T ss_pred EEECCCCC-HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEE-------ecCCCHHHHhcCCceEEEeCC
Confidence 99999986 68899999999 999888866 779999999999999999 55541 1111113233443
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
.|.+++.+...++..|++.+.++++..++..... |+++.+++.++++|+++..+.
T Consensus 409 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 409 EDPEDIARGLLKAFESEETWSAYQEKGKQRVEER--YTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--SBHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999999998887543 899999999999999987643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-13 Score=122.08 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 002273 403 VQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLY 435 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~------p~~~~a~~~la~~~ 435 (944)
.+|++++|+..|+++++++ |++..++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 5555555555555555555 55555555544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-10 Score=131.21 Aligned_cols=376 Identities=10% Similarity=-0.017 Sum_probs=259.0
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc---CCCCHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKL---DPQNACAHTH 121 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 121 (944)
..+...+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. ++.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3678888999999988999999999999999888 88888888888777763 35567788888874 7788888888
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHH--------HHHHHHcCChHHHHHHHHHHHhhCCC
Q 002273 122 CGILYK----DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL--------GTSLKLAGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 122 la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l--------g~~~~~~g~~~~A~~~~~~al~~~p~ 189 (944)
....+. .+++.+.+...|++++.. |.............+.. .........+..|...|+++....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 877654 356788999999999995 43322111100001000 00111223455566666665554322
Q ss_pred -CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 190 -YAPAYYNLGVVYSEL--MQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 190 -~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
....|......-... +- .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l 248 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL 248 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH
Confidence 334554444332221 10 355778999999999999999999999999999999999999999999 988765
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 341 (944)
+...+... ..... ... +...+.. ...+.+ .....+....+|...+....+.++.+.
T Consensus 249 ~~~y~~~~-e~~~~-~~~---------------l~~~~~~-~~~~~~------~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 249 SLYYGLVM-DEEAV-YGD---------------LKRKYSM-GEAESA------EKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHT-TCTHH-HHH---------------HHHHTC-----------------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhhc-chhHH-HHH---------------HHHHHHh-hccchh------hhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 55433321 00000 000 0000000 000000 000001123567888888888888999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|...|+++ ...+.....|...|.+....+ +.+.|...|+++++..|+.+..+..++......|+.+.|...|+++
T Consensus 305 AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~--- 380 (493)
T 2uy1_A 305 FRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL--- 380 (493)
T ss_dssp HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred HHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 99999999 443345677777777666655 6999999999999999999988888888888999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 421 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+.....|......-...|+.+.+.+.++++++
T Consensus 381 -~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 -EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888888888888999999999999886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=132.56 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=106.9
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 002273 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAA 410 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A 410 (944)
...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3457778888888888888888888888888888888888888888888888888888888888888 7788888 899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999888999999999999999999999999999999987543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=125.36 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|+++.+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhC
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGV--LYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~--~~~~~g~~~eA~~~~~~al~l~ 455 (944)
..|++++|+.+|+++++.+|++..++..++. .+...|++++|++.++++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999999999999999999888855444 4888899999999998876653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-13 Score=121.82 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 355 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC------CCChhhhhhH
Q 002273 435 YRDAGSISLAIDAYEQCLKID------PDSRNAGQNR 465 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~------P~~~~a~~~~ 465 (944)
+..+|++++|+..|+++++++ |++..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 999999999999999999999 7766655543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-12 Score=117.87 Aligned_cols=61 Identities=33% Similarity=0.376 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (944)
+.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 65 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 3333333444444444444444443333333333333333333333333333333333333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=127.57 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 354 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
+.++..++.+|.++...|++++|+.+|+++++++|+++.+++++|.+|...|++++|+..|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
+|..+|++++|+.+|+++++++|++..++.++.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=157.16 Aligned_cols=198 Identities=10% Similarity=0.049 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC
Q 002273 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p 320 (944)
.++|++.+.+++..+|++..+|...+.++..++....... ....++++++.++++++.+|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~--------------------~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEE--------------------SAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHH--------------------HHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhh--------------------hhhhHHHHHHHHHHHHHhCC
Confidence 4566777777777777777777777777766554100000 01125899999999999999
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
++..+|...+.++...+ +++++++.++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999 6699999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHH
Q 002273 398 GVVYTVQ--------------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQC 451 (944)
Q Consensus 398 a~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~e------------A~~~~~~a 451 (944)
+.++... +.+++|++++.+++..+|++..+|+.++.++...+++++ |+.+|.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 264 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRP 264 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccc
Confidence 9999885 568999999999999999999999999999999998776 56667888
Q ss_pred HhhCCCC
Q 002273 452 LKIDPDS 458 (944)
Q Consensus 452 l~l~P~~ 458 (944)
+.++|..
T Consensus 265 i~~~~~~ 271 (567)
T 1dce_A 265 LTVGSRM 271 (567)
T ss_dssp ECTTBTT
T ss_pred eeccccc
Confidence 8888764
|
| >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=149.20 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=141.7
Q ss_pred CCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHc--CCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 677 ALTNGFITFGSFNNL---AKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
+++++ ++++++++. .|..+.+++++.++.... |+.+|+++|.+ .+.....+++..+++| +++.|.|.++
T Consensus 247 ~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~~~~~~~l~~~~~~~~---~~~~~~g~~~ 320 (439)
T 3fro_A 247 GMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG---NVKVITEMLS 320 (439)
T ss_dssp TCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCC--CHHHHHHHHHHHHHCT---TEEEECSCCC
T ss_pred CCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCC--ChhHHHHHHHHHhhcC---CEEEEcCCCC
Confidence 34566 777777764 589999999999999887 99999999865 2344578888888888 7788888776
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCHHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLAL 826 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~ 826 (944)
.++....|..+||++-|..+ +.|++.+|||++|+|||+ +++|+ .++. -| ..++. .|++++++...
T Consensus 321 -~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~-------s~~~~~~e~~~-~~-~g~~~~~~d~~~la~~i~ 390 (439)
T 3fro_A 321 -REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGLRDIIT-NE-TGILVKAGDPGELANAIL 390 (439)
T ss_dssp -HHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEE-------ESSTHHHHHCC-TT-TCEEECTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEE-------cCCCCcceeEE-cC-ceEEeCCCCHHHHHHHHH
Confidence 68889999999999988876 779999999999999999 55541 1111 14 44443 49999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 827 QLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 827 ~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
++.. |++.++++++..++.. +. |+++.+++.++++|+++.+
T Consensus 391 ~ll~~~~~~~~~~~~~~~~~~-~~--~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 391 KALELSRSDLSKFRENCKKRA-MS--FSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp HHHHHTTTTTHHHHHHHHHHH-HT--SCHHHHHHHHHHHHHTCSC
T ss_pred HHHhcCHHHHHHHHHHHHHHH-hh--CcHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999887 34 9999999999999987643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-12 Score=136.96 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
|.....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+..++++++..+.....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44556677888999999999999999999999877654 346678899999999999999999999887654332
Q ss_pred HhHHHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 002273 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL---KIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM-- 223 (944)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 223 (944)
...+.++..+|.++...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+++++++..+.
T Consensus 152 -~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 152 -YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp -THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 2246689999999999999999999999999 4455542 68999999999999999999999999987532
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 002273 224 ----YAEAYCNMGVIYKNRGDLESA-IACYERCLAVS 255 (944)
Q Consensus 224 ----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 255 (944)
...+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267899999999999999999 88899988653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-12 Score=130.82 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhc
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~ 287 (944)
|+..+++.++..+.....+..+|.++...|++++|++.+.+.+..+| ++..+...++.++..++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-------------- 150 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-------------- 150 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC--------------
Confidence 56666666655444455556666777777777777777777666665 55555555555544433
Q ss_pred CCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHhhCCC--CH
Q 002273 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH----YADAMYNL--GVAYGEML--KFDMAIVFYELAFHFNPH--CA 357 (944)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~ 357 (944)
+.+.|.+.++++.+.+|+ +-.+...+ +.+....| ++++|...|+++.+..|+ ..
T Consensus 151 ----------------r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 151 ----------------NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp ----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred ----------------CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 336666666666666652 12222333 33344444 777777777777666665 22
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSI----------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a 427 (944)
..+++ ++..+|++++|.+.++++++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 33333 677777777777777766655 36677777777777777776 6777777777777776654
Q ss_pred H
Q 002273 428 Y 428 (944)
Q Consensus 428 ~ 428 (944)
.
T Consensus 290 ~ 290 (310)
T 3mv2_B 290 K 290 (310)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-12 Score=136.94 Aligned_cols=301 Identities=11% Similarity=0.062 Sum_probs=183.0
Q ss_pred CcEEEeecCC--------C---cc---CcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC
Q 002273 510 PLVIGYVSPD--------Y---FT---HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 575 (944)
Q Consensus 510 ~lriGy~S~d--------~---~~---h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~ 575 (944)
+.||.+++.. | .. --+..++..+...+....++|++++........ +...-+..
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~ 70 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPA 70 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSC
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccC
Confidence 3688999887 2 11 223445555666666667899998765432211 01111112
Q ss_pred CCHHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCCccc-cccc--ccc
Q 002273 576 IDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPET-KQKH--VEE 652 (944)
Q Consensus 576 ~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~-~~~~--~e~ 652 (944)
.....+.+.|+..++||++--..+... ......-.| -++.-|..... ...|.+|+ +... ...+ .++
T Consensus 71 ~~~~~l~~~l~~~~~Dvi~~~~~~~~~---~~~~~~~~p-v~~~h~~~~~~--~~~d~ii~-----~S~~~~~~~~~~~~ 139 (342)
T 2iuy_A 71 GEPEEIERWLRTADVDVVHDHSGGVIG---PAGLPPGTA-FISSHHFTTRP--VNPVGCTY-----SSRAQRAHCGGGDD 139 (342)
T ss_dssp CSHHHHHHHHHHCCCSEEEECSSSSSC---STTCCTTCE-EEEEECSSSBC--SCCTTEEE-----SCHHHHHHTTCCTT
T ss_pred CcHHHHHHHHHhcCCCEEEECCchhhH---HHHhhcCCC-EEEecCCCCCc--ccceEEEE-----cCHHHHHHHhcCCc
Confidence 233578899999999999765444321 112223345 33333433221 11444443 2221 1222 356
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHH
Q 002273 653 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 730 (944)
Q Consensus 653 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 730 (944)
+..+|+.. . +....+... ..++. .+++.+++ ..|..+.+++++.++ +.+|+++|.+ ..+..+
T Consensus 140 ~~vi~ngv-d--~~~~~~~~~---~~~~~-~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g----~~~~~l 203 (342)
T 2iuy_A 140 APVIPIPV-D--PARYRSAAD---QVAKE-DFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPA----WEPEYF 203 (342)
T ss_dssp SCBCCCCB-C--GGGSCCSTT---CCCCC-SCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCC----CCHHHH
T ss_pred eEEEcCCC-C--hhhcCcccc---cCCCC-CEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCc----ccHHHH
Confidence 66676532 1 110001000 11122 23444554 589999999998876 7899999876 244556
Q ss_pred HHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC-----------CCCcccHHHhhhcCCcEEecCCCccccc
Q 002273 731 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-----------YAGTTTTCESLYMGVPCVTMAGSVHAHN 799 (944)
Q Consensus 731 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-----------~~~~~t~~eal~~gvPvvt~~g~~~~~r 799 (944)
++..+.+| ++|.|.|.++ ..+....|..+|+++-|.. .+.|++.+|||++|+|||+ ++
T Consensus 204 ~~~~~~~~---~~v~~~g~~~-~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~-------s~ 272 (342)
T 2iuy_A 204 DEITRRYG---STVEPIGEVG-GERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVG-------TG 272 (342)
T ss_dssp HHHHHHHT---TTEEECCCCC-HHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEE-------CC
T ss_pred HHHHHHhC---CCEEEeccCC-HHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEE-------cC
Confidence 66666666 7999999987 5788899999999998876 3779999999999999999 55
Q ss_pred chh-H-HHhhc-CCcccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 800 VGV-S-LLTKV-GLKHLIAK-NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 800 ~~~-~-~l~~~-gl~~~v~~-~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
+++ . ++... |-..+++. |.+++.+...++.+ ..+.|+.++++ |+++.+++.++++|+++..
T Consensus 273 ~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~ 337 (342)
T 2iuy_A 273 NGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA----SDEVRRAAVRL------WGHVTIAERYVEQYRRLLA 337 (342)
T ss_dssp TTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC----HHHHHHHHHHH------HBHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH----HHHHHHHHHHh------cCHHHHHHHHHHHHHHHHc
Confidence 541 1 11110 34455555 99999999888887 23333333332 7999999999999998865
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=119.99 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 398 (944)
.|.....+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34567788899999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
.++...|++++|+.+++++++.+|++..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999888889999988887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=138.08 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ 115 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 115 (944)
...+...+..++..|+|++|+..++++++..+.+.. .+..+|.++...+++++|+..|+++++..+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344556788999999999999999999998776654 33458888888899999999999999865432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----- 190 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 190 (944)
..++..+|.+|..+|++++|+.+|+++++............+.++.++|.++..+|++++|+.+++++++..+..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 347899999999999999999999999964322211223345567777777777777777777777777653322
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 002273 191 -APAYYNLGVVYSELM-QYDTALGCYEKAAL 219 (944)
Q Consensus 191 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 219 (944)
+.+++.+|.+|..+| .+++|+++|++++.
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 556666666666666 35666666666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-13 Score=129.85 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=120.1
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHCCCH--HH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 375 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 375 (944)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
|+.+|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=137.69 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=145.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV------EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 115 (944)
....+...+..++..|+|++|+..++++++..+... ..++.+|.++...|++++|+..++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345567889999999999999999999999887654 346778889999999999999999999875443
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 002273 116 -ACAHTHCGILYKDEGRLVEAAESYHKAL---SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-- 189 (944)
Q Consensus 116 -~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 189 (944)
..++..+|.+|..+|++++|+.+|++++ +..+++... .+.++.++|.++..+|++++|+.+++++++..++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~---~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF---DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc---hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 445544322 2367899999999999999999999999987532
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 002273 190 ----YAPAYYNLGVVYSELMQYDTA-LGCYEKAALE 220 (944)
Q Consensus 190 ----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 220 (944)
...+++++|.+|..+|++++| ..++++++.+
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 277899999999999999999 8889998864
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=149.18 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=144.5
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC--CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccC
Q 002273 677 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP--NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
+++++.++++++.+. .|..+.++++|.++....| +.+|+++|.+.......+.+++.++++|+ .++|.|+|.++
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l-~~~v~~~g~~~- 315 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGV-EKRIRFLDPRP- 315 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTC-TTTEEEECCCC-
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCC-CCcEEEcCCCC-
Confidence 445666778888865 7999999999999999988 78999998622112456788888999999 58999999987
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHH
Q 002273 753 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQ 827 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~~ 827 (944)
..+....|+.+||++-|..+ +.|++.+|||++|+|||+ +++++ .++. -|-..+++ .|.+++.+...+
T Consensus 316 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~-------~~~~~~~e~i~-~~~~g~~~~~~d~~~la~~i~~ 387 (438)
T 3c48_A 316 PSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIA-------ARVGGLPIAVA-EGETGLLVDGHSPHAWADALAT 387 (438)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEE-------ESCTTHHHHSC-BTTTEEEESSCCHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEe-------cCCCChhHHhh-CCCcEEECCCCCHHHHHHHHHH
Confidence 67899999999999988866 679999999999999999 44431 1111 13333443 489999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
+.+|++.+.++++..++.... |+++.+++.++++|+++..+
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 388 LLDDDETRIRMGEDAVEHART---FSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999888753 89999999999999998874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=148.53 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--
Q 002273 304 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-- 371 (944)
Q Consensus 304 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 371 (944)
..++|++.+++++..+|++..+|+..+.++...|+ ++++++.++++++.+|++..+|...+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34789999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA------------ 438 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~------------ 438 (944)
++++++++++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred --CCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 439 --GSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 439 --g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
+.+++|++++.+++.++|++..++.++..
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ 234 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRW 234 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 56899999999999999999998877543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=118.86 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|.....+..+|..+...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 441 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~ 441 (944)
++...|++++|+.+++++++.+|++..++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=135.84 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 365 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 365 (944)
.++++++.+.++......+.....+..+|..+...|++++|+..|++++++.|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444445567788999999999999999999999999988876 88999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++...++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred -HHHHHHH
Q 002273 446 -DAYEQCL 452 (944)
Q Consensus 446 -~~~~~al 452 (944)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=118.44 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (944)
.+.++..+|..++..|+|++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++...+..++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999998877777788889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
..+|.++...|++++|++.|+++++.+|+ ++..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 99999999999999999999999988775 4443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=124.91 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
+.++..++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+.+|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
++..+|++++|+.+|+++++++|++..+++.++...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988777666543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-12 Score=133.23 Aligned_cols=245 Identities=14% Similarity=0.004 Sum_probs=186.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 167 LKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (944)
.+-.|+|..++... -+..|.+ ....+.+.++|..+|++.... ..+....+...++..+. ++ |+
T Consensus 23 ~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~ 86 (310)
T 3mv2_B 23 NYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NI 86 (310)
T ss_dssp HHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CC
T ss_pred HHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HH
Confidence 44579999999843 3344443 345666778888999887421 11222334444444442 22 78
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC--CCH
Q 002273 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW--HYA 323 (944)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p--~~~ 323 (944)
..+++.+...+........++.++.. .|++++|++.+.+.+..+| .+.
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~------------------------------~g~~eeAL~~l~~~i~~~~~~~~l 136 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAI------------------------------LGDLDKSLETCVEGIDNDEAEGTT 136 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHH------------------------------HTCHHHHHHHHHHHHTSSCSTTHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHH------------------------------cCCHHHHHHHHHHHhccCCCcCcH
Confidence 88888887765555556666666544 5677999999999999887 788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHH--HHHHHHCC--CHHHHHHHHHHHHhhCCC--CHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNL--GVIYKDRD--NLDKAVECYQMALSIKPN--FSQS 393 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~ 393 (944)
+++..++.++..+|+.+.|.+.++++.+.+|+ +..+...+ +++....| ++++|...|+++.+..|+ ....
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l 216 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH
Confidence 99999999999999999999999999999983 22333444 54466556 999999999999888887 3344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIEKAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~~al~~----------~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
+++ ++..+|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 217 Lln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 217 LLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 444 899999999999999987776 48899999999999999998 89999999999999998554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=122.57 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAA----- 420 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~----- 420 (944)
..+.++|..+...|++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555566666666666666666666666665 33 38888888888888999998888888888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 421 --NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 421 --~p~~~~a~----~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+|++..+| +++|.++..+|++++|+..|+++++++|++......
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999998776554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=118.76 Aligned_cols=101 Identities=25% Similarity=0.330 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYN 429 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~a~~ 429 (944)
+.++.++|..++..|++++|+++|+++++++|+++.++.++|.+|..+|++++|++.++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777765543 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++|.++..+|++++|+++|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7788888888888888888888877775
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-12 Score=134.08 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.+...+..+...|++++|+..++++++..+..+. .+..+|.++...+++++|+..|+++++..+...+. ...+
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-~~~~ 155 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-YQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-THHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-HHHH
Confidence 3445577889999999999999999998776654 33458899999999999999999999976654442 3456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------ 224 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 224 (944)
.++..+|.++...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.+++++++..+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 67999999999999999999999999953 22235688999999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 002273 225 AEAYCNMGVIYKNRGD-LESAIACYERCLAV 254 (944)
Q Consensus 225 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 254 (944)
..++..+|.++..+|+ +++|+++|++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7899999999999995 69999999999875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-12 Score=126.03 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=117.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....++.+|..++..|++++|+..|++++ + .++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34567899999999999999999999995 3 37899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHH---------hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAA---------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
...|++++|+..|+++++..|++.... .....++..+|.++...|++++|+..|+++++.+|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999998865110 0112345666666666677777777777777666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=117.72 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q 002273 439 GSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~~~ 459 (944)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-11 Score=111.57 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56777778888888888888888888888877777788888888888888888888888888887877777888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
..|++++|+.+++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888877777777777776554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-12 Score=115.56 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=111.9
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...+.....++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++.+|++..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g 171 (944)
+|.++...|++++|+..|+++++.+|.+... +..++.++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEA-------ADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHH-------HHHHHHHHHHhc
Confidence 9999999999999999999999999988765 444555554444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=118.58 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.+..++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
...|++++|+..|+++++.+|++...+. ...++..+...|++++|+..+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKM-----KYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999876532 234444566778888888888876543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-13 Score=154.00 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=132.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 002273 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 365 (944)
Q Consensus 301 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 365 (944)
..+++++|+..++.++...|..+..+..+|..+...|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556777777787888888888999999999999999999999999999999988 689999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH-HHHH
Q 002273 446 DA-YEQC 451 (944)
Q Consensus 446 ~~-~~~a 451 (944)
.. |++.
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 53 4433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-12 Score=116.83 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 354 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
+.++..++.+|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++...|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=131.64 Aligned_cols=165 Identities=15% Similarity=0.053 Sum_probs=113.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH---------HhHHHH
Q 002273 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA---------AECLAI 158 (944)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~ 158 (944)
.+.+....|.+++|.+.++......+.....+..+|..++..|++++|+..|+++++..|.+... ......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34444555666666666655555455556667777777777777777777777777776665411 011235
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (944)
++..+|.++...|++++|+..++++++.+|++..+++.+|.+|...|++++|+..|+++++.+|++..++..++.++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHH-HHHHHHH
Q 002273 239 GDLESAI-ACYERCL 252 (944)
Q Consensus 239 g~~~~A~-~~~~~al 252 (944)
++..++. ..+.+.+
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 8777776 4444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=114.95 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=113.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 396 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 396 (944)
..++.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 002273 397 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 397 la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~a~~~la~~~~~~g~ 440 (944)
+|.++...|++++|+..|+++++++|+ +..+...+..+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 67777777776655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=140.55 Aligned_cols=230 Identities=14% Similarity=0.121 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+...+..|..+...|+|++|++.|.++++..|.........+......+..+ .++..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~al~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------------TSILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------------HHHHHHHHHHH
Confidence 3457788888888889999999888888887765433222222211111111 23466788888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVY 201 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 201 (944)
..|++++|++.+.+++...+..... .....+...++.++...|++++|+..+++++... +....++..+|.+|
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKS-KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHH-HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 8888888888888877766554432 2223456667777777888888888888887652 23367888999999
Q ss_pred HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 202 SELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
...|+|++|+.++++++.. .+...+++..++.+|...|++++|...+++++...+.........+.++...|..
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999998875 2334678999999999999999999999999887554333334445555555543
Q ss_pred hhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh
Q 002273 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY 318 (944)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~ 318 (944)
+...+++.+|..+|.+++..
T Consensus 226 -----------------------~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 226 -----------------------HCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp -----------------------TTSSSCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHhHHHHHHHHHHHHHH
Confidence 67788999999999888764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-11 Score=108.85 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
..++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 438 AGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 438 ~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.|++++|++.|+++++.+|++..++.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 55555555555555555555544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-12 Score=113.78 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCh
Q 002273 129 EGRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~ 150 (944)
.|++++|+..|+++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=123.55 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=131.7
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCH
Q 002273 300 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNL 373 (944)
Q Consensus 300 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~ 373 (944)
...|++++|.+.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35788999999665555433366889999999999999999999999999984 344477899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCC
Q 002273 374 DKAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGS 440 (944)
Q Consensus 374 ~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~a~~~la~~~~~~g~ 440 (944)
++|+.++++++++ .+++ ..++.++|.++...|++++|+.+++++++..+ .+ ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999988 4433 45789999999999999999999999997632 22 3457899999999999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 002273 441 ISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~ 458 (944)
+++|++++++++++....
T Consensus 163 ~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999875543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-12 Score=116.93 Aligned_cols=111 Identities=17% Similarity=0.066 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-------NVE-----AHIGKGICLQMQNMGRLAFDSFSEAVKL--- 111 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (944)
.+..++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 112 ----DPQNACAH----THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
+|++..+| +.+|.++..+|++++|+..|+++++++|++......+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 99999999999999999999999999998876544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=120.05 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 384 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 384 (944)
+..+...|..++..|++++|+..|++++.. +|....++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888888888888888888776 33333444444444444444444444444444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 44444444444444444444444444444444444444444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=110.85 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=112.6
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+.....++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~ 173 (944)
.++...|++++|+..|+++++..|++... +..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETY-------KSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHhcC
Confidence 99999999999999999999999998765 55566666665654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-13 Score=153.43 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+..+..+|..+...|++++|++.|+++++.+|++..++.++|.++..+|++++|++.|+++++++|+++.+++++|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCChhhhh
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNAGQ 463 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~--~~~~g~~~eA~~~~~-----------~al~l~P~~~~a~~ 463 (944)
.+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ ++++++|+...++.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccc
Confidence 99999999999999999999999999999998 888999999999999 89999888765543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=124.01 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=115.1
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNACAHTHCGILYKDEGR 131 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 131 (944)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999999666654433367899999999999999999999999999983 34456789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcC
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYSELM 205 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g 205 (944)
+++|+..++++++......+.....+.++..+|.++...|++++|+..++++++..+. + ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9999999999998732222111234556777777777788888888888777754211 1 223455566666666
Q ss_pred CHHHHHHHHHHHHHh
Q 002273 206 QYDTALGCYEKAALE 220 (944)
Q Consensus 206 ~~~~A~~~~~~al~~ 220 (944)
++++|+.++++++++
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-11 Score=107.30 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
.+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
...|++++|+..++++++.+|++..++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999888753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=118.94 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSI------------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 418 (944)
...+..+|..++..|++++|+..|++++++ +|....++.++|.+|..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999999 66777899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 419 ~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999999999998844
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=146.30 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=143.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 679 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 679 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
..+.++++++++. .|..+.+++++.++....|+.+|+|+|++.. .......+.+.+++.|+ .++|.|+|.
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL-~~~V~flG~ 647 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKL-NGQFRWISS 647 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTC-BBBEEEECC
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCC-CCcEEEccC
Confidence 4455667777754 8999999999999998889999999987631 11266788899999999 589999996
Q ss_pred ccC---cHHHHHhcc-cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH-HHhhcCCccccc--CCHHHH
Q 002273 750 ILL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEY 821 (944)
Q Consensus 750 ~~~---~~~~~~~~~-~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v~--~~~~~y 821 (944)
+.+ ..+....|. .+||++-|..+ +.|.+.+|||+||+|||+ +++|+. -+-.-|...++. .|++++
T Consensus 648 ~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIa-------sd~GG~~EiV~dg~~Gllv~p~D~e~L 720 (816)
T 3s28_A 648 QMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCKGGPAEIIVHGKSGFHIDPYHGDQA 720 (816)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEE-------ESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred ccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEE-------eCCCChHHHHccCCcEEEeCCCCHHHH
Confidence 543 356777776 68999988766 789999999999999999 666611 000113233333 388999
Q ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH--HHHHHhc
Q 002273 822 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN--MWHRYCK 874 (944)
Q Consensus 822 ~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~ 874 (944)
.+...++. .|++.+.++++..++.+.+. |+++.++..++++|+. .|.....
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~--fSwe~~a~~ll~lY~~~g~wk~vs~ 777 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEK--YTWQIYSQRLLTLTGVYGFWKHVSN 777 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhHhhhcch
Confidence 98886665 89999999999999987544 9999999999999986 4664443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-11 Score=113.00 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (944)
.|.....++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34455666666666666666666666666666666655 555666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
.+|.++...|++++|+.+|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666655555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=110.23 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 002273 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 430 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~~ 430 (944)
+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56777788888888888888999999999988888888888889999999999999999999999999888 8889999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhCCCCh
Q 002273 431 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 431 la~~~~~~-g~~~eA~~~~~~al~l~P~~~ 459 (944)
+|.++... |++++|++++++++...|++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=147.34 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=127.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------HHhHHHHHHHHHHH
Q 002273 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP--------AAECLAIVLTDLGT 165 (944)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~lg~ 165 (944)
..+++++|+..|+++++.+|+....+..+|..++..|++++|+..|+++++++|.+.. .....+.++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888889999999999999999999999999998888631 12233556888999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (944)
++..+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred HH
Q 002273 246 AC 247 (944)
Q Consensus 246 ~~ 247 (944)
..
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=106.53 Aligned_cols=113 Identities=41% Similarity=0.622 Sum_probs=105.6
Q ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 353 NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 353 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
+|.. ...++.+|.++...|++++|++.|+++++..|++..++..+|.++...|++++|+.+++++++..|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|.++...|++++|+.+|+++++.+|++..+..++
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 117 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999998877664
|
| >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-11 Score=120.05 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=123.5
Q ss_pred CCCCCCeEEEecCC---CCcCCHHHHHHHHHHH--hHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-ccCc
Q 002273 677 ALTNGFITFGSFNN---LAKITPKVLQVWARIL--CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLI 750 (944)
Q Consensus 677 ~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~ 750 (944)
+++++. +++++++ ..|..+.++++|..+. ...|+.+|+++|.+ .+.....+++.+.++| +|.| .|.+
T Consensus 32 ~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~--~~~~~~~l~~~~~~~~----~v~~~~g~~ 104 (200)
T 2bfw_A 32 GMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG----NVKVITEML 104 (200)
T ss_dssp TCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHHHHHHHHHHHHCT----TEEEECSCC
T ss_pred CCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC--ChHHHHHHHHHHHhcC----CEEEEeccC
Confidence 343443 4555554 6699999999999998 88899999999865 2236778888888887 8999 9998
Q ss_pred cCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhh-cCCcccccC--CHHHHHHHHH
Q 002273 751 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIAK--NEDEYVQLAL 826 (944)
Q Consensus 751 ~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~-~gl~~~v~~--~~~~y~~~a~ 826 (944)
+ ..+....|+.+|++|-|..+ +.|++.+|||++|+|||+ +++++ +-.. -|-..++.. |.+++++...
T Consensus 105 ~-~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~-------~~~~~-~~e~~~~~~g~~~~~~~~~~l~~~i~ 175 (200)
T 2bfw_A 105 S-REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGG-LRDIITNETGILVKAGDPGELANAIL 175 (200)
T ss_dssp C-HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHH-HHHHCCTTTCEEECTTCHHHHHHHHH
T ss_pred C-HHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEE-------eCCCC-hHHHcCCCceEEecCCCHHHHHHHHH
Confidence 7 67899999999999998876 669999999999999999 55552 1122 244455544 9999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHhh
Q 002273 827 QLAS-DVTALANLRMSLRDLMS 847 (944)
Q Consensus 827 ~l~~-d~~~~~~~r~~~~~~~~ 847 (944)
++.+ |++.+.++++..++...
T Consensus 176 ~l~~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 176 KALELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999888754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-12 Score=138.51 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002273 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-----------------EACNNLGVIYKDRDNLDKAVECYQMAL 384 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al 384 (944)
.+..+..+|..+...|++++|+..|++++...|++. .+++++|.++...|++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356788999999999999999999999999999876 388899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++...|++++...|+++.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888 44556778888899999999888754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-09 Score=122.55 Aligned_cols=337 Identities=7% Similarity=-0.093 Sum_probs=223.4
Q ss_pred hCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 002273 60 SRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAE 137 (944)
Q Consensus 60 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 137 (944)
..| +++.|..+|++++...|. |+++.+...|++++...| +...|........+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999988876 889999999999999888 78888888877777663 456677
Q ss_pred HHHHHHHc---CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------
Q 002273 138 SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS------------ 202 (944)
Q Consensus 138 ~~~~al~~---~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------ 202 (944)
.|+.++.. ++.+...+...+..+... -..+++.+.+...|++++.....+..-+...-..+.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~---~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKI---EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSC---SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88888875 455555433322221100 012457888999999999964333332221111111
Q ss_pred --HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 203 --ELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNR--GD-----LESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 203 --~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
....+..|...|+.+....+. ....|......-... +- .+.....|++++...|..+..|...+..+..
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~- 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG- 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Confidence 123344555556655543222 344554444432221 11 3456789999999999998888888776544
Q ss_pred hhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 273 GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352 (944)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 352 (944)
.|+.++|...|++++.. |.+...+...+... +. ++....+.+....
T Consensus 226 -----------------------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 226 -----------------------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSM 271 (493)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC-
T ss_pred -----------------------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHh
Confidence 45669999999999999 98877666554431 11 1111111111100
Q ss_pred C----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 002273 353 N----------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAAN 421 (944)
Q Consensus 353 ~----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~ 421 (944)
. +....+|...+....+.++.+.|...|+++ ...+.....+...|.+....+ +.+.|...|+.+++..
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0 112356778888887888899999999999 443345667777777776666 6999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 422 PTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 422 p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
|+.+..+...+......|+.+.|...|+++
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988888888889999999999999998
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-11 Score=108.30 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 433 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~la~ 433 (944)
++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455555555555555555555555555544 455555555555555555555555555555555 455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++...|++++|+..|+++++.+|++..+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 55555555555555555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-11 Score=109.18 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNL 397 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 397 (944)
..++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999987 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
|.++..+|++++|+..|+++++..|++..+...+..+....++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998887776666554444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-10 Score=107.69 Aligned_cols=114 Identities=21% Similarity=0.131 Sum_probs=107.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (944)
...+.....++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..++++++.+|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3456688999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
++.+|.++...|++++|+..|+++++.+|++......
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 9999999999999999999999999999998776433
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=117.24 Aligned_cols=158 Identities=8% Similarity=0.063 Sum_probs=116.9
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
++|+.+++ ..|..+.++++|..+ +..|+.+|+++|.+ .....+.+.+++.|+ +|.| |.++ ..+....|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~---~v~~-g~~~-~~~~~~~~ 72 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKG----PDEKKIKLLAQKLGV---KAEF-GFVN-SNELLEIL 72 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCS----TTHHHHHHHHHHHTC---EEEC-CCCC-HHHHHHHH
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCC----ccHHHHHHHHHHcCC---eEEE-eecC-HHHHHHHH
Confidence 45666664 489999999999986 55699999999875 346778888888888 8888 9887 78999999
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCC-cEEec-CCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002273 761 SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTM-AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 761 ~~~Di~Ld~~~~-~~~~t~~eal~~gv-Pvvt~-~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
+.+||++-|..+ +.|.+.+|||++|+ |||+. .+.....-+ ..-|. -+...|.+++.+...++.+|++.+..
T Consensus 73 ~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 73 KTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFA-----LDERS-LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp TTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC-----SSGGG-EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred HhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc-----cCCce-EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 999999988866 77999999999996 99992 222111111 11011 23356999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHH
Q 002273 838 LRMSLRDLMSKSPVCDGQNFAL 859 (944)
Q Consensus 838 ~r~~~~~~~~~~~~~~~~~~~~ 859 (944)
+++..++.. +. |+++.++.
T Consensus 147 ~~~~~~~~~-~~--~s~~~~~~ 165 (166)
T 3qhp_A 147 MQNEYAKSA-LN--YTLENSVI 165 (166)
T ss_dssp HHHHHHHHH-HH--HC------
T ss_pred HHHHHHHHH-HH--CChhhhhc
Confidence 999988865 22 67766553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-11 Score=109.13 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-------HHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLN 395 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 395 (944)
+..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++..|++ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666665544 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
.+|.++...|++++|+.+|+++++..| +......++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 666666666666666666666666665 35555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=113.98 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-- 438 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~-- 438 (944)
+++++|++.++++++++|+++++++++|.++...++ +++|+..|+++++++|++.++++++|.+|..+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 345555555555555555555555555555555544 45777777777777777777777777777766
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 439 ---------GSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 439 ---------g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|++++|+++|++|++++|++.....+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999998655444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-11 Score=130.34 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 386 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (944)
...+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|++++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 66777888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888877653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=106.07 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 396 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 396 (944)
+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+++|+++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 002273 397 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 424 (944)
Q Consensus 397 la~~~~~~-g~~~~A~~~l~~al~~~p~~ 424 (944)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999998864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-10 Score=129.30 Aligned_cols=204 Identities=13% Similarity=0.045 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----------------EAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
+....|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++.+++++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666554421 346778888888888888888888877654
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335 (944)
Q Consensus 256 p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 335 (944)
+........ ..+...++.++..
T Consensus 86 ~~~~~~~~~----------------------------------------------------------~~~~~~l~~~~~~ 107 (434)
T 4b4t_Q 86 MQFAKSKTV----------------------------------------------------------KVLKTLIEKFEQV 107 (434)
T ss_dssp HTSCHHHHH----------------------------------------------------------HHHHHHHHHHCSC
T ss_pred HHccchHHH----------------------------------------------------------HHHHHHHHHHHhC
Confidence 433221110 1123334444455
Q ss_pred cCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 002273 336 MLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 336 ~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~ 403 (944)
.|++++|+.++++++... +....++..+|.++...|++++|+.++++++.. .+....++..++.+|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 555555555555555431 122456666677777777777777777666654 22234567777777777
Q ss_pred cCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 404 QGKMDAAAEMIEKAIAANP---TY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p---~~----~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
.|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777777777777766522 21 345666777777777888888777777764
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-11 Score=117.73 Aligned_cols=147 Identities=13% Similarity=0.014 Sum_probs=107.0
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHH--HcCCCCCcEEEccCcc
Q 002273 676 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE--QLGLESLRVDLLPLIL 751 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~--~~gi~~~rv~~~~~~~ 751 (944)
..++++..+|+++.+. .|..+.++++|.++ |+.+|+++|.+... ..+++.+. ..|+ .++|.|.|.++
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~----~~l~~~~~~~~~~l-~~~v~~~g~~~ 87 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKG----DHAERYARKIMKIA-PDNVKFLGSVS 87 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTT----STHHHHHHHHHHHS-CTTEEEEESCC
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccH----HHHHHHHHhhhccc-CCcEEEeCCCC
Confidence 3445555556666654 78878888877765 89999999865322 35555666 7788 58999999987
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccc-cCCHHHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI-AKNEDEYVQLALQ 827 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v-~~~~~~y~~~a~~ 827 (944)
..+....|+.+|+++-|..+ +.|++.+|||++|+|||+ ++++. .++.. |-..++ ..|.+++++...+
T Consensus 88 -~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~-------~~~~~~~e~i~~-~~~g~~~~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 88 -EEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIA-------VNEGGFKETVIN-EKTGYLVNADVNEIIDAMKK 158 (177)
T ss_dssp -HHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEE-------ESSHHHHHHCCB-TTTEEEECSCHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEE-------eCCCCHHHHhcC-CCccEEeCCCHHHHHHHHHH
Confidence 57899999999999986644 778999999999999999 55441 11111 333333 6899999999999
Q ss_pred HhcCHHH-HHHHHH
Q 002273 828 LASDVTA-LANLRM 840 (944)
Q Consensus 828 l~~d~~~-~~~~r~ 840 (944)
+.+|++. ++++|+
T Consensus 159 l~~~~~~~~~~~~~ 172 (177)
T 2f9f_A 159 VSKNPDKFKKDCFR 172 (177)
T ss_dssp HHHCTTTTHHHHHH
T ss_pred HHhCHHHHHHHHHH
Confidence 9999875 344443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-11 Score=136.06 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=116.4
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002273 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 297 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 376 (944)
..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.+++++|.+|..+|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 002273 377 VECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 424 (944)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~l~-----------~al~~~p~~ 424 (944)
++.|+++++++|++..++..++.+ +...|++++|++.++ ++++..|+.
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999998 889999999999999 777777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=110.97 Aligned_cols=135 Identities=25% Similarity=0.265 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------ 390 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 390 (944)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4678899999999999999999999999885432 3588999999999999999999999999875442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
..++.++|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|++++++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998732 22568899999999999999999999999987654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=105.03 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 002273 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAY 428 (944)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~a~ 428 (944)
.+..++.+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.+++++++..|++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999999998877 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+.+|.++...|++++|+++|++++++.|+ ......
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 117 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 99999999999999999999999999994 554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=110.29 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.+.+++|++.++++++.+|+++++++++|.++...++++.+...++ .+++|+..|+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~~le 70 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHHHHH
Confidence 3445555555555555555555555555555555554432222111 1457777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQG-----------KMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~al~~~p~~~ 425 (944)
++++++|++..+++++|.+|..+| ++++|+++|++|++++|++.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777777777664 78888888888888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-11 Score=108.42 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 370 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
.|++++|+.+|++++++ +|++..++.++|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777777776 466666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCChhhh
Q 002273 447 AYEQCLKIDPDSRNAG 462 (944)
Q Consensus 447 ~~~~al~l~P~~~~a~ 462 (944)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777666543
|
| >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=131.94 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=130.2
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EccCccCcHHHH
Q 002273 681 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~-~~~~~~~~~~~~ 757 (944)
+.++++++++ ..|..+.++++|..+.. ++.+|+|+|.+ .+..++.+++...++| ++|+ |.|. + ..+..
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~ 361 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAG--DPVLQEGFLAAAAEYP---GQVGVQIGY-H-EAFSH 361 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEE--CHHHHHHHHHHHHHST---TTEEEEESC-C-HHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCC--chHHHHHHHHHHHhCC---CcEEEeCCC-C-HHHHH
Confidence 5556666664 58999999999999876 58999999865 2346778888888875 7886 7777 3 45557
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhh--cC---------Cccccc--CCHHHHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VG---------LKHLIA--KNEDEYVQ 823 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~--~g---------l~~~v~--~~~~~y~~ 823 (944)
..|+.+||++-|+.+ +.|++.+|||++|+|||+ +++|+ +-.. -| -..++. .|.+++.+
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~-------s~~gg-~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~ 433 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLV-------RRTGG-LADTVSDCSLENLADGVASGFVFEDSNAWSLLR 433 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHH-HHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEE-------CCCCC-ccceeccCccccccccccceEEECCCCHHHHHH
Confidence 889999999888866 779999999999999999 66642 1111 12 334443 38999999
Q ss_pred HHHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 824 LALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 824 ~a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
...++. .|++.++++++..++ ..|+++.+++.++++|+++...
T Consensus 434 ~i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 434 AIRRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhhh
Confidence 999998 799988888887753 4599999999999999988653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.5e-11 Score=108.41 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=78.2
Q ss_pred HcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 335 EMLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 411 (944)
..|++++|+..|+++++. +|++..++..+|.++...|++++|+.+|+++++.+|+++.+++++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888888888888888 57778888889999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 002273 412 EMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 412 ~~l~~al~~~p~~~~a~~ 429 (944)
..++++++..|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888876543
|
| >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-10 Score=122.89 Aligned_cols=318 Identities=13% Similarity=0.005 Sum_probs=178.6
Q ss_pred cEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC--C------------
Q 002273 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--I------------ 576 (944)
Q Consensus 511 lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~--~------------ 576 (944)
.||.+++.....|-. ....+........++|.+++...... ...+. ...-.+..+.. +
T Consensus 7 mkIl~~~~~~gG~~~--~~~~la~~L~~~G~~V~v~~~~~~~~--~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVF--PGLAVAHHLMAQGWQVRWLGTADRME--ADLVP----KHGIEIDFIRISGLRGKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSHHHHH--HHHHHHHHHHTTTCEEEEEECTTSTH--HHHGG----GGTCEEEECCCCCCTTCCHHHHHTCH
T ss_pred cEEEEEeCCCccchh--HHHHHHHHHHHcCCEEEEEecCCcch--hhhcc----ccCCceEEecCCccCcCccHHHHHHH
Confidence 678888866543332 22234445555678898887643211 11111 11111222211 0
Q ss_pred -----CHHHHHHHhHhCCccEEEecCCCCCCCchhhhc--cCCcceeeecccCC-CC---CCCCCccEEEecCCCCCccc
Q 002273 577 -----DEKKVAAMVREDKIDILVELTGHTANNKLGMMA--CQPAPVQVTWIGYP-NT---TGLPTIDYRITDSLADPPET 645 (944)
Q Consensus 577 -----~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a--~r~ApvQ~~~~G~p-~t---~g~~~~Dy~i~d~~~~p~~~ 645 (944)
.-.++.+.|+..++||++--.+.. +-...++ ..-.|+=++..+.. +. .-....|.+++.. + ..
T Consensus 79 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~d~v~~~~---~-~~ 152 (364)
T 1f0k_A 79 LRIFNAWRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAF---P-GA 152 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEECSSTT--HHHHHHHHHHTTCCEEEEECSSSCCHHHHHHTTTCSEEEESS---T-TS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCcC--chHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCEEEecC---h-hh
Confidence 123567788889999997643321 1122222 22356555543321 10 0123467766531 1 00
Q ss_pred ccccccceEEcCCCcc--ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce-EEEecC
Q 002273 646 KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR-LVVKCK 719 (944)
Q Consensus 646 ~~~~~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~~~~~ 719 (944)
+. ++..+|+..- .|.+. ..+...+++. +.+++.+..+. .|..+.+++++.++.. +.+ +++.|.
T Consensus 153 ---~~-~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~G~ 221 (364)
T 1f0k_A 153 ---FP-NAEVVGNPVRTDVLALP----LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQSGK 221 (364)
T ss_dssp ---SS-SCEECCCCCCHHHHTSC----CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEECCT
T ss_pred ---cC-CceEeCCccchhhcccc----hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEcCC
Confidence 22 3334443210 01110 0001112333 34445555444 5676777788887644 566 455665
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccc-
Q 002273 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAH- 798 (944)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~- 798 (944)
+. .+.+.+.++++|+ ++|.|.|.+ .+....|..+|+++-|. ||+|++|||++|+|||+.+-.....
T Consensus 222 ~~-----~~~l~~~~~~~~~--~~v~~~g~~---~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~~~ 288 (364)
T 1f0k_A 222 GS-----QQSVEQAYAEAGQ--PQHKVTEFI---DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKDRQ 288 (364)
T ss_dssp TC-----HHHHHHHHHHTTC--TTSEEESCC---SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTTCH
T ss_pred ch-----HHHHHHHHhhcCC--CceEEecch---hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCchh
Confidence 41 3677888888898 479999987 35667778899999774 6899999999999999954221110
Q ss_pred -cchhHHHhhcCCcccccC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 799 -NVGVSLLTKVGLKHLIAK-N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 799 -r~~~~~l~~~gl~~~v~~-~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
...+..+...|..-++.. | .+++.+...+| |++.++++++..++.. ..|+++.+++.+|+.|+++=..
T Consensus 289 q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 289 QYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHH 360 (364)
T ss_dssp HHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhh
Confidence 011334555576334432 3 67777777666 9999999999888763 3589999999999999876443
|
| >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=130.51 Aligned_cols=166 Identities=14% Similarity=0.000 Sum_probs=128.8
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EccCccCcHHHHH
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~-~~~~~~~~~~~~~ 758 (944)
.+++++++++ .|..+.++++|.++.. ++.+|+++|.+ .+..++.+++...++| ++|+ |.|. + .++...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~~ 361 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAG--DVALEGALLAAASRHH---GRVGVAIGY-N-EPLSHL 361 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECB--CHHHHHHHHHHHHHTT---TTEEEEESC-C-HHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCC--chHHHHHHHHHHHhCC---CcEEEecCC-C-HHHHHH
Confidence 4467777754 7999999999999876 58999999875 3346778888888875 7887 7777 3 455568
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc--C---------Cccccc--CCHHHHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV--G---------LKHLIA--KNEDEYVQL 824 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~--g---------l~~~v~--~~~~~y~~~ 824 (944)
.|..+||++-|+.+ +.|.+.+|||++|+|||+ +++|+ +-..+ | -..++. .|.+++.+.
T Consensus 362 ~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~-------s~~gg-~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~ 433 (485)
T 1rzu_A 362 MQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTGG-LADTVIDANHAALASKAATGVQFSPVTLDGLKQA 433 (485)
T ss_dssp HHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHH-HHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHH
T ss_pred HHhcCCEEEECcccCCCCHHHHHHHHCCCCEEE-------eCCCC-hhheecccccccccccCCcceEeCCCCHHHHHHH
Confidence 89999999888865 779999999999999999 66642 11111 2 334443 488999999
Q ss_pred HHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 825 ALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 825 a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
..++. .|++.+.++++..++ ..|+++.+++.++++|+++.
T Consensus 434 i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 434 IRRTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhh
Confidence 99988 899888888877653 46999999999999998763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=6e-11 Score=129.79 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.+..+..+|..++..|+|++|+..|+++++..|++.. +...+++.++...+. ..+++++|.+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4566778888888888888888888888888876542 111222233222221 12556666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV-YSELM 205 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g 205 (944)
..+|++++|+..|+++++++|++..+ ++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a-------~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKA-------LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665443 55555666666666666666666666666666666666665 33344
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q 002273 206 QYDTALGCYEKAALERPMYA 225 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~ 225 (944)
..+++...|.+++...|.+.
T Consensus 314 ~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHhhCCCCCCC
Confidence 55666666666666666543
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=128.86 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=131.1
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 677 ALTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
+++++.++++++++. .|..+.++++|.++... .|+.+|+++|.+. .+.+.+.++++|+ .++|.|+|. .
T Consensus 191 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-----~~~~~~~~~~~~~-~~~v~~~g~---~ 261 (374)
T 2iw1_A 191 GIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-----PRKFEALAEKLGV-RSNVHFFSG---R 261 (374)
T ss_dssp TCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-----CHHHHHHHHHHTC-GGGEEEESC---C
T ss_pred CCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-----HHHHHHHHHHcCC-CCcEEECCC---c
Confidence 455666777777754 78899999999988777 5899999998752 2567777888898 589999997 3
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCccccc---CCHHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIA---KNEDEYVQLALQ 827 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~---~~~~~y~~~a~~ 827 (944)
.+....|..+|+++-|..+ +.|++.+|||++|+|||+ ++++ ..++.. |-..++. .|.+++++...+
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~-------~~~~~~~e~i~~-~~~g~~~~~~~~~~~l~~~i~~ 333 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT-------TAVCGYAHYIAD-ANCGTVIAEPFSQEQLNEVLRK 333 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE-------ETTSTTTHHHHH-HTCEEEECSSCCHHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEE-------ecCCCchhhhcc-CCceEEeCCCCCHHHHHHHHHH
Confidence 5678888999999888765 779999999999999999 4443 122322 2223333 399999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.+|++.++++++..++.... +++..+++.+++.++.
T Consensus 334 l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 334 ALTQSPLRMAWAENARHYADT---QDLYSLPEKAADIITG 370 (374)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 999999999999999987653 3566667777666653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=8e-10 Score=105.62 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (944)
.++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|++++|+..++++++..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45667777777777777777777777766543222 23345567777888888888888888888877764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (944)
..++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+..+++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 55778888888889999999988888887532 12457788899999999999999999988876543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-09 Score=119.72 Aligned_cols=126 Identities=13% Similarity=0.202 Sum_probs=115.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK----------------IDPHYAPAYYNLGVVYSELMQYDTALGC 213 (944)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~ 213 (944)
.......+..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344445566789999999999999999999999998 7778889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 214 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777654
|
| >2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=124.25 Aligned_cols=246 Identities=16% Similarity=0.103 Sum_probs=147.9
Q ss_pred HHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCC-----CCCCCccEEEecCCCCCcccccc-ccc
Q 002273 578 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT-----TGLPTIDYRITDSLADPPETKQK-HVE 651 (944)
Q Consensus 578 ~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t-----~g~~~~Dy~i~d~~~~p~~~~~~-~~e 651 (944)
...+.+.|+..++||++-...+.-.+ +...+.+ |+=+. .+.... .-+...|.+++-.-.+-...... ..
T Consensus 100 ~~~l~~~l~~~~pDiv~~~~~~~~~~-~~~~~~~--p~~~~-~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~g~~- 174 (374)
T 2xci_A 100 PFSVKRFEELSKPKALIVVEREFWPS-LIIFTKV--PKILV-NAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAK- 174 (374)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCCHH-HHHHCCS--CEEEE-EECCCCCHHHHHHHTTCSEEEESCHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHhCCCEEEEECccCcHH-HHHHHhC--CEEEE-EeecCchHHHHHHHHhCCEEEECCHHHHHHHHHcCCC-
Confidence 46788899999999998432221111 1111223 65322 122111 01245677664211000000111 22
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHH
Q 002273 652 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFL 731 (944)
Q Consensus 652 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~ 731 (944)
++..+|+. .|.+.... .. .+..-.+++++ +..|-.+.++++|.++.+..|+.+|+|+|.+ +...+.++
T Consensus 175 ki~vi~n~--~f~~~~~~---~~--~l~~~vi~~~~--~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g---~~~~~~l~ 242 (374)
T 2xci_A 175 RVFSCGNL--KFICQKGK---GI--KLKGEFIVAGS--IHTGEVEIILKAFKEIKKTYSSLKLILVPRH---IENAKIFE 242 (374)
T ss_dssp SEEECCCG--GGCCCCCS---CC--CCSSCEEEEEE--ECGGGHHHHHHHHHHHHTTCTTCEEEEEESS---GGGHHHHH
T ss_pred eEEEcCCC--ccCCCcCh---hh--hhcCCEEEEEe--CCCchHHHHHHHHHHHHhhCCCcEEEEECCC---HHHHHHHH
Confidence 67777764 24432111 11 12222234444 4568788999999999999999999999864 12235788
Q ss_pred HHHHHcCCCC-------CcEEEccCccCcHHHHHhcccccEEecCCCC--CCcccHHHhhhcCCcEEecCC-Ccccccch
Q 002273 732 STLEQLGLES-------LRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAG-SVHAHNVG 801 (944)
Q Consensus 732 ~~~~~~gi~~-------~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--~~~~t~~eal~~gvPvvt~~g-~~~~~r~~ 801 (944)
+.+++.|+.. ++|.|.+.. .+....|+.+||++-+..+ .||.+.+|||+||+|||+-+. ..+.. .
T Consensus 243 ~~~~~~gl~~~~~~~~~~~v~~~~~~---~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e--~ 317 (374)
T 2xci_A 243 KKARDFGFKTSFFENLEGDVILVDRF---GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVND--L 317 (374)
T ss_dssp HHHHHTTCCEEETTCCCSSEEECCSS---SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHH--H
T ss_pred HHHHHCCCceEEecCCCCcEEEECCH---HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHH--H
Confidence 8889999852 478887753 5678889999996443322 568999999999999997110 11111 0
Q ss_pred hHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002273 802 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 847 (944)
Q Consensus 802 ~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 847 (944)
...+..-|.- +.+.|.+++.+...+|.+| +.+++|+++.|+.+.
T Consensus 318 ~~~~~~~G~l-~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 318 KEFLEKEGAG-FEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHTTCE-EECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCE-EEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 1111122331 2357999999999999999 999999998888764
|
| >3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-10 Score=128.16 Aligned_cols=162 Identities=11% Similarity=0.097 Sum_probs=117.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++|+++.|+ .|..+.+++++.++++. +.+|+++|.+ .......++...... .++|.|.+... ..+..
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 396 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTG--KKKFEKLLKSMEEKY---PGKVRAVVKFN-APLAH 396 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCB--CHHHHHHHHHHHHHS---TTTEEEECSCC-HHHHH
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEecc--CchHHHHHHHHHhhc---CCceEEEEecc-HHHHH
Confidence 456778888876 89999999999999874 5677777654 334455555544444 47898888765 56666
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC--------------------
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-------------------- 816 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~-------------------- 816 (944)
..|+.+||+|-|+-| +.|.+.+|||++|+|||+ +++| |++|.|.+
T Consensus 397 ~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~g-------G~~e~V~dg~~G~~~~~~~~~g~l~~~~ 462 (536)
T 3vue_A 397 LIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTG-------GLVDTVIEGKTGFHMGRLSVDCKVVEPS 462 (536)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCT-------HHHHHCCBTTTEEECCCCCSCTTCCCHH
T ss_pred HHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCC-------CchheeeCCCCccccccCCCceeEECCC
Confidence 788999999988866 889999999999999999 8888 77666532
Q ss_pred CHHHHHH---HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 817 NEDEYVQ---LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 817 ~~~~y~~---~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
|.+++.+ +|+.+..++. ++++ .|..|.+ -|+|++.++++|++|+++.
T Consensus 463 d~~~la~ai~ral~~~~~~~-~~~~---~~~am~~--~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 463 DVKKVAATLKRAIKVVGTPA-YEEM---VRNCMNQ--DLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHTTSHH-HHHH---HHHHHHS--CCSSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcCcHH-HHHH---HHHHHHh--cCCHHHHHHHHHHHHHHhh
Confidence 3455544 3455556653 3333 3344543 4999999999999999873
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.8e-09 Score=95.13 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 421 (944)
|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred C
Q 002273 422 P 422 (944)
Q Consensus 422 p 422 (944)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.9e-10 Score=99.97 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 430 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~ 430 (944)
...+..+|.++...|++++|++.|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777 777777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 002273 431 LGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 431 la~~~~~~g~~~eA~~~~~~ 450 (944)
+|.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777776666655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=87.35 Aligned_cols=83 Identities=42% Similarity=0.596 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q 002273 437 DAG 439 (944)
Q Consensus 437 ~~g 439 (944)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-09 Score=93.52 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|++..+++.+|.+|...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChh
Q 002273 454 IDPDSRN 460 (944)
Q Consensus 454 l~P~~~~ 460 (944)
++|++.+
T Consensus 82 ~~~~~~~ 88 (115)
T 2kat_A 82 AAQSRGD 88 (115)
T ss_dssp HHHHHTC
T ss_pred hcccccc
Confidence 9886543
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-08 Score=110.59 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=117.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+++.+++.++.+..+-....+....+.+...+-..+++.+++. .++.+. ++ +++|.|.+.++ +..
T Consensus 240 ~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~----~~~~l~------~~-~~~v~~~~~~~----~~~ 304 (412)
T 3otg_A 240 TARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL----DVSGLG------EV-PANVRLESWVP----QAA 304 (412)
T ss_dssp TTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC----CCTTCC------CC-CTTEEEESCCC----HHH
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC----Chhhhc------cC-CCcEEEeCCCC----HHH
Confidence 4566778888877666667777667777766544444444331 111111 23 58999999873 456
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..||+++-. +|++|++|||++|+|||+.+-.. -....+..+...|..-++.. |.++..+...+|.+|++.+
T Consensus 305 ~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~~-~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 305 LLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWAG-DSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp HGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCch-hHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 67779999932 45599999999999999976431 12234556777788777754 8899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+++++..++... . +..+++++.+|+.+..
T Consensus 381 ~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 381 AGARAVAAEIAA-M--PGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHH-S--CCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHhc-C--CCHHHHHHHHHHHhcc
Confidence 988887766543 2 4889999999988743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=96.92 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHT 120 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (944)
++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHK 141 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~ 141 (944)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988877766554
|
| >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=113.97 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=126.2
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCC--H---HHHHHHHHHHHHc----CCC-CCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC--D---SVRHRFLSTLEQL----GLE-SLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~--~---~~~~~~~~~~~~~----gi~-~~rv 744 (944)
+..++.++.|+ .|..+..++++.++++..|+ .+|+++|.+... + ..++.+.+.+.+. |.. ...|
T Consensus 254 ~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v 333 (482)
T 1uqt_A 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 333 (482)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSE
T ss_pred CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 34456667765 89999999999999999986 568888764321 1 2344555444332 331 1346
Q ss_pred EE-ccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCC-----cEEecCCCcccccchhHHHhhcCCcccc--c
Q 002273 745 DL-LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV-----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 815 (944)
Q Consensus 745 ~~-~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gv-----Pvvt~~g~~~~~r~~~~~l~~~gl~~~v--~ 815 (944)
+| .+.++ ..+..+.|+.+|||+-|+-+ +-|.+.+|||+||+ |||+ |+++++ ...+. ..++ .
T Consensus 334 ~~~~g~v~-~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~-------S~~~G~-~~~l~-~g~lv~p 403 (482)
T 1uqt_A 334 YYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAGA-ANELT-SALIVNP 403 (482)
T ss_dssp EEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBGG-GGTCT-TSEEECT
T ss_pred EEeCCCCC-HHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEE-------ECCCCC-HHHhC-CeEEECC
Confidence 65 56655 78999999999999888866 78999999999998 7877 554321 11111 2333 3
Q ss_pred CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
.|.+++.+...+++++ ++.++++.+++++++.+ |+...+++.+.+.|+++
T Consensus 404 ~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 5899999999999884 67788888888888753 79999999999999663
|
| >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.2e-09 Score=115.58 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=121.0
Q ss_pred CCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.++++++.+.. |..+.++++|.++.+..|+.+|++.+++ .+..++.+++.+ +. .++|.|+|..+ ..+.
T Consensus 204 ~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~--~~~~~~~l~~~~---~~-~~~v~~~g~~~-~~~~ 276 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GH-VKNVILIDPQE-YLPF 276 (384)
T ss_dssp TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCC--CHHHHHHHHHHh---hc-CCCEEEeCCCC-HHHH
Confidence 4556677777654 7778999999999999999998885332 123455555443 22 36899988766 4788
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~ 836 (944)
...|..||+++-|. |+ +++|||++|+|||+.+-.. +..-+..-|..-+|..|+++..+...+|.+|++.++
T Consensus 277 ~~~~~~ad~~v~~S---g~-~~lEA~a~G~PvI~~~~~~-----~~~e~v~~g~g~lv~~d~~~la~~i~~ll~d~~~~~ 347 (384)
T 1vgv_A 277 VWLMNHAWLILTDS---GG-IQEEAPSLGKPVLVMRDTT-----ERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQ 347 (384)
T ss_dssp HHHHHHCSEEEESS---ST-GGGTGGGGTCCEEEESSCC-----SCHHHHHHTSEEEECSSHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhCcEEEECC---cc-hHHHHHHcCCCEEEccCCC-----CcchhhhCCceEEeCCCHHHHHHHHHHHHhChHHHh
Confidence 89999999998765 44 4899999999999854200 111122336333454699999999999999998888
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
++++..++. ..-|++++++..+++.|.+.
T Consensus 348 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 348 AMSRAHNPY---GDGQACSRILEALKNNRISL 376 (384)
T ss_dssp HHHSSCCTT---CCSCHHHHHHHHHHHTCCCC
T ss_pred hhhhccCCC---cCCCHHHHHHHHHHHHHHhh
Confidence 888765433 24578888888888776544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-08 Score=84.90 Aligned_cols=85 Identities=41% Similarity=0.622 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (944)
.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|++..++.++|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 002273 401 YTVQG 405 (944)
Q Consensus 401 ~~~~g 405 (944)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-09 Score=90.16 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=71.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777788888888888888888888887 88888888888888888888888888888887776643 5
Q ss_pred CHHHHHHHHHHHHhhCCCChh
Q 002273 440 SISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 440 ~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+.+++..|++++..+|++..
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 567778888888777776643
|
| >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=112.57 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=117.9
Q ss_pred CCCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
+++.++++++++.. |..+.++++|.++.+..|+.++++.+++ ....++.+.+.+ +. .++|.|+|..+ ..+
T Consensus 203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~--~~~~~~~~~~~~---~~-~~~v~~~g~~~-~~~ 275 (375)
T 3beo_A 203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHM--NPVVRETANDIL---GD-YGRIHLIEPLD-VID 275 (375)
T ss_dssp TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHH
T ss_pred cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCC--CHHHHHHHHHHh---hc-cCCEEEeCCCC-HHH
Confidence 34556677787764 7789999999999988999987664332 223344443332 32 36999988876 468
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
....|..+|+++-|. |++.+|||++|+|||+.. |. . ..++ .-|..-+|..|.+++.+...+|.+|++
T Consensus 276 ~~~~~~~ad~~v~~s----g~~~lEA~a~G~Pvi~~~~~~~-~-----~e~v-~~g~g~~v~~d~~~la~~i~~ll~~~~ 344 (375)
T 3beo_A 276 FHNVAARSYLMLTDS----GGVQEEAPSLGVPVLVLRDTTE-R-----PEGI-EAGTLKLAGTDEETIFSLADELLSDKE 344 (375)
T ss_dssp HHHHHHTCSEEEECC----HHHHHHHHHHTCCEEECSSCCS-C-----HHHH-HTTSEEECCSCHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhCcEEEECC----CChHHHHHhcCCCEEEecCCCC-C-----ceee-cCCceEEcCCCHHHHHHHHHHHHhChH
Confidence 889999999998654 556999999999999852 22 1 1122 235333444699999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
.++++++..++. ..-|++++++..+++.+
T Consensus 345 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 345 AHDKMSKASNPY---GDGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHHCCCCCTT---CCSCHHHHHHHHHHHHT
T ss_pred hHhhhhhcCCCC---CCCcHHHHHHHHHHHHh
Confidence 888877665443 23578888888888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=88.94 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHH
Q 002273 304 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVEC 379 (944)
Q Consensus 304 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 379 (944)
++++|+.+|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345555555555554422222 555555555555555555555544 345555555555554 4555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 002273 380 YQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~ 420 (944)
|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555443 344555555555555 45555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=113.54 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=107.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCH---
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS--- 391 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--- 391 (944)
..+..+..+|+|++|+.++++++++ .+++ ...+.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455677899999999999999986 3444 568899999999999999999999999976 35554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
..+.+||.+|..+|++++|+.+|++|+++ .|++ .+....++.++..++.+++|...|+++.+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986 4554 566788999999999999999999998653
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=105.69 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=116.5
Q ss_pred CCCCeEEEecCCC--CcCC-HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNL--AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
++..+++.++++. .|-. ..++....+. ...|+.++++.+++. .++.+. ++ +++|.|.+..+ ..+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~----~~~~l~------~~-~~~v~~~~~~~-~~~ 282 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPE----HRALLT------DL-PDNARIAESVP-LNL 282 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGG----GGGGCT------TC-CTTEEECCSCC-GGG
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCc----chhhcc------cC-CCCEEEeccCC-HHH
Confidence 3456677777766 3334 7888888888 888999988886542 122221 34 57899999875 333
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC-----CHHHHHHHHHHHhc
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-----NEDEYVQLALQLAS 830 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~-----~~~~y~~~a~~l~~ 830 (944)
.+..||+++- -+|++|++|||++|+|+|+++-.. -....+..+...|...++.. |.++..+...+|.+
T Consensus 283 ---ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 283 ---FLRTCELVIC---AGGSGTAFTATRLGIPQLVLPQYF-DQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp ---TGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCST-THHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred ---HHhhCCEEEe---CCCHHHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 4488999992 355679999999999999986421 12334556777788777765 78999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
|++.++++++..++.. . ....++.+..+|+...
T Consensus 356 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 356 DTGFAAAAIKLSDEIT-A--MPHPAALVRTLENTAA 388 (391)
T ss_dssp CTHHHHHHHHHHHHHH-T--SCCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHh
Confidence 9999888877655543 2 2467888888877553
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-09 Score=118.76 Aligned_cols=145 Identities=9% Similarity=-0.012 Sum_probs=102.7
Q ss_pred CCCcCCHHHHHHHHHHHhHcCC---ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEE
Q 002273 690 NLAKITPKVLQVWARILCAVPN---SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS 766 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~---~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~ 766 (944)
...|..+.+++++..+.+..|+ .+|+++|.+... .++|+ .++|.|+|.++ .++....|+.|||+
T Consensus 252 ~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----------~~l~~-~~~v~f~G~~~-~~~l~~~~~~adv~ 318 (413)
T 2x0d_A 252 VKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----------IALGK-GIHLNSLGKLT-LEDYADLLKRSSIG 318 (413)
T ss_dssp CGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----------EEEET-TEEEEEEESCC-HHHHHHHHHHCCEE
T ss_pred hhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----------hhcCC-cCcEEEcCCCC-HHHHHHHHHhCCEE
Confidence 4568889999999999988886 799999865321 34677 47999999987 68999999999999
Q ss_pred ecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc-c-cCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002273 767 LDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I-AKNEDEYVQLALQLASDVTALANLRMSLR 843 (944)
Q Consensus 767 Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~-v-~~~~~~y~~~a~~l~~d~~~~~~~r~~~~ 843 (944)
+-|+-+ +.|.+.+|||+||+|||+-.|.. . .+.. -|-..+ | ..|++++.+...+|..|++.+++ ..+
T Consensus 319 v~pS~~E~~g~~~lEAmA~G~PVV~~~~g~-~-----e~v~-~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~ 388 (413)
T 2x0d_A 319 ISLMISPHPSYPPLEMAHFGLRVITNKYEN-K-----DLSN-WHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKK 388 (413)
T ss_dssp ECCCSSSSCCSHHHHHHHTTCEEEEECBTT-B-----CGGG-TBTTEEEESSCSHHHHHHHHHHHHHHTC----------
T ss_pred EEecCCCCCCcHHHHHHhCCCcEEEeCCCc-c-----hhhh-cCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHH
Confidence 988764 78999999999999999833321 1 1111 143443 3 36999999999999999876655 222
Q ss_pred HHhhcCCCCChHHHHHH
Q 002273 844 DLMSKSPVCDGQNFALG 860 (944)
Q Consensus 844 ~~~~~~~~~~~~~~~~~ 860 (944)
++ ...|+|+..+..
T Consensus 389 ~~---~~~~~W~~~~~~ 402 (413)
T 2x0d_A 389 ES---SNMMFYINEFNE 402 (413)
T ss_dssp CC---BSCGGGCCCC--
T ss_pred HH---HHhCCHHHHHHH
Confidence 22 235777776555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=88.16 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|++.|++++++.|+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 5667777777777777777777777777777777777777777777777777777777777777777665443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=88.09 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 412 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 412 (944)
+++++|+.+|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4689999999999998754443 999999999999999999999987 789999999999999 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 002273 413 MIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKID 455 (944)
Q Consensus 413 ~l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~ 455 (944)
+|+++.+. .++.+.++||.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987 679999999999999 999999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-08 Score=85.18 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5677777777777777777777777777777777777777777777777777777777777777776644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=87.48 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVE-AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.+..|..++..|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887744
Q ss_pred CCHHHHHHHHHHHHHcCCCCh
Q 002273 130 GRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~ 150 (944)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888877776653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=107.17 Aligned_cols=132 Identities=17% Similarity=0.034 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQNA 116 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 116 (944)
..+..+..+..+|+|++|+.+++++++. .|++ ...+..+|.+|..+|+|++|+.++++++++ .|+++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455667788999999999999999985 3444 567899999999999999999999999975 45554
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 117 ---CAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 117 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
..+.++|.+|..+|++++|+..|++++++ .|+++.. +.+...++.++..++.+++|...|.++.+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~----~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999875 5666654 44556677777777778888877777654
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=105.08 Aligned_cols=161 Identities=15% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCCeEEEecCCCCcC--------CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 680 NGFITFGSFNNLAKI--------TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~--------~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
+..++|.++.+.... ....+....+.+... +.++++.+++. .++.+. .+ +++|.|.++++
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~----~~~~l~------~~-~~~v~~~~~~~ 293 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDK----LAQTLQ------PL-PEGVLAAGQFP 293 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC------------------C-CTTEEEESCCC
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCc----chhhhc------cC-CCcEEEeCcCC
Confidence 445666666655321 223344444445555 46666665441 122222 23 68999999874
Q ss_pred CcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQL 828 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l 828 (944)
+...+..||+++ .-+|++|++|||++|||+|+++-..- ....+..+...|..-++.. |.++..+...+|
T Consensus 294 ----~~~ll~~ad~~v---~~gG~~t~~Ea~~~G~P~v~~p~~~~-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~l 365 (398)
T 4fzr_A 294 ----LSAIMPACDVVV---HHGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 365 (398)
T ss_dssp ----HHHHGGGCSEEE---ECCCHHHHHHHHHTTCCEEECCCSGG-GHHHHHHHHHTTSEEECC-------CHHHHHHHH
T ss_pred ----HHHHHhhCCEEE---ecCCHHHHHHHHHhCCCEEecCCchh-HHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 344556699999 24666999999999999999875321 2234556677788777753 678888888999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
.+|++.++++++..++.. ....+++.+..+|+
T Consensus 366 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 366 RDDSSYVGNARRLAAEMA---TLPTPADIVRLIEQ 397 (398)
T ss_dssp HHCTHHHHHHHHHHHHHT---TSCCHHHHHHHHTC
T ss_pred HhCHHHHHHHHHHHHHHH---cCCCHHHHHHHHhc
Confidence 999999888887776553 23568888887764
|
| >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-08 Score=108.88 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=110.4
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
+..+++.+++..+.- .. +..+.+..|+.+|+|+|.+. ++++|+ .++|.|+|.++ .++....|
T Consensus 221 ~~~~i~~vGrl~~~K-g~---~~~l~~~~~~~~l~ivG~g~------------~~~~~l-~~~V~f~G~~~-~~~l~~~~ 282 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDP-EF---FVVASKAFPQVTFHVIGSGM------------GRHPGY-GDNVIVYGEMK-HAQTIGYI 282 (406)
T ss_dssp SSEEEEEECCTTBCH-HH---HHHHHHHCTTEEEEEESCSS------------CCCTTC-CTTEEEECCCC-HHHHHHHH
T ss_pred CCcEEEEEecccccc-CH---HHHHHHhCCCeEEEEEeCch------------HHhcCC-CCCEEEcCCCC-HHHHHHHH
Confidence 335677777775432 22 67777888999999998652 456687 58999999987 67899999
Q ss_pred ccccEEecCCCC-CCcccHHHhh-------hcCCcEEecCCCcccccchhHHHhhcCCcccc---cCCHHHHHHHHHHHh
Q 002273 761 SLMDISLDTFPY-AGTTTTCESL-------YMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---AKNEDEYVQLALQLA 829 (944)
Q Consensus 761 ~~~Di~Ld~~~~-~~~~t~~eal-------~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v---~~~~~~y~~~a~~l~ 829 (944)
+.+||++-|+.+ +.|.+.+||| ++|+|||+ +++ +.. |-..++ ..|++++.+...++.
T Consensus 283 ~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIa-------s~~----v~~-~~~G~l~v~~~d~~~la~ai~~ll 350 (406)
T 2hy7_A 283 KHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVC-------PNA----VVG-PYKSRFGYTPGNADSVIAAITQAL 350 (406)
T ss_dssp HTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEE-------EGG----GTC-SCSSEEEECTTCHHHHHHHHHHHH
T ss_pred HhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEE-------ehh----ccc-CcceEEEeCCCCHHHHHHHHHHHH
Confidence 999999988865 7799999999 99999999 544 111 333333 469999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH--HHH
Q 002273 830 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST--YRN 867 (944)
Q Consensus 830 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~--~~~ 867 (944)
.|++ + + ....|+++..++.++++ |..
T Consensus 351 ~~~~---------~-~--~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 351 EAPR---------V-R--YRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp HCCC---------C-C--CSCCCBHHHHHHHHHCGGGSGG
T ss_pred hCcc---------h-h--hhhcCCHHHHHHHHHHhhcccc
Confidence 9886 1 2 23569999999999888 653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-07 Score=92.51 Aligned_cols=185 Identities=11% Similarity=0.029 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------------------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------------------MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.-.+.+++-++..+|++...+...+..|..-. ++..|.++|.++.+. ...+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 34577888899999999877666555543221 234555555555431 1111
Q ss_pred HHHHHcCCHHHHHH-----HHHHHH-HcCCCChhHHhHHHHHHHHHHHH----HHHcCChHHHHHHHHHHHhhCCC--CH
Q 002273 124 ILYKDEGRLVEAAE-----SYHKAL-SADPSYKPAAECLAIVLTDLGTS----LKLAGNTQDGIQKYYEALKIDPH--YA 191 (944)
Q Consensus 124 ~~~~~~g~~~~A~~-----~~~~al-~~~p~~~~~~~~la~~~~~lg~~----~~~~g~~~~A~~~~~~al~~~p~--~~ 191 (944)
. ......+.+++. -+.+++ +.+|++.+.....+.++...+.. ....+...+|...++++++++|+ +.
T Consensus 121 L-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 121 L-ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp H-HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred H-HHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 1 111223332222 223333 45666666655544444332211 11223457899999999999999 67
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc
Q 002273 192 PAYYNLGVVYSEL-----MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 192 ~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 258 (944)
.+|..+|.+|... |+.++|.++|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 7999999999995 99999999999999999975 9999999999988 499999999999999988763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-07 Score=90.89 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=93.6
Q ss_pred hhCCCCHHHHHHHHHHHHH---C--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 002273 351 HFNPHCAEACNNLGVIYKD---R--D------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 412 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 412 (944)
+.+|++++.++-.|.+... . | ...+|...++++++++|+ +..++..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888887777766533 1 2 367899999999999999 566999999999995 99999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 002273 413 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 413 ~l~~al~~~p~~-~~a~~~la~~~~~-~g~~~eA~~~~~~al~l~P~~ 458 (944)
+|+++++++|+. ..+++.+|..+.. .|++++|.+++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 499999999999999998874
|
| >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-06 Score=94.43 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=116.8
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 678 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.++..+++.++.+..+...+.+....+.+...|--.++..|.+.. ++.+. .+ +++|.|.+.++ ..
T Consensus 228 ~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~------~~-~~~v~~~~~~~-~~--- 292 (402)
T 3ia7_A 228 RPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD----PAVLG------PL-PPNVEAHQWIP-FH--- 292 (402)
T ss_dssp STTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC----GGGGC------SC-CTTEEEESCCC-HH---
T ss_pred CCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC----hhhhC------CC-CCcEEEecCCC-HH---
Confidence 345677888888887777777777777777777333343443211 11111 13 68999999876 22
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~ 834 (944)
..+..||+++- -+|++|++|||++|+|+|.++-...-....+..+...|..-.+.. |.++..+...+|.+|++.
T Consensus 293 ~ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~ 369 (402)
T 3ia7_A 293 SVLAHARACLT---HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAV 369 (402)
T ss_dssp HHHTTEEEEEE---CCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHH
Confidence 66777999883 255588899999999999886512223345667777888776654 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
++++++..++. . .....++.+..+|+.++.
T Consensus 370 ~~~~~~~~~~~-~--~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 370 RERVRRMQRDI-L--SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHHHH-H--TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-h--hCChHHHHHHHHHHHHhh
Confidence 88877655443 2 225678888888887753
|
| >3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-07 Score=102.19 Aligned_cols=175 Identities=9% Similarity=-0.008 Sum_probs=124.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc---eEEEecCCCC-CH----HHHHHHHHHHHHc----CCCCCcEEEc
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCAVPNS---RLVVKCKPFC-CD----SVRHRFLSTLEQL----GLESLRVDLL 747 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~---~l~~~~~~~~-~~----~~~~~~~~~~~~~----gi~~~rv~~~ 747 (944)
..++.+..++ .|..+..++++ ++|+..|+. +|++++.+.. +. .+++.+.+...+. |.. +|+|+
T Consensus 281 ~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f~ 357 (496)
T 3t5t_A 281 HRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRID 357 (496)
T ss_dssp SEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEEE
T ss_pred ceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEEe
Confidence 3445555655 89999999999 999999974 5777765432 21 2334444443332 553 89999
Q ss_pred cCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcC---CcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHH
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMG---VPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEY 821 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~g---vPvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y 821 (944)
+.++ ..+..+.|+.+||++-|+-+ +-|.+++|||+|| .|+|. |.++++ ...+|-..++ ..|.++.
T Consensus 358 g~v~-~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVl-------Se~aGa-~~~l~~~allVnP~D~~~l 428 (496)
T 3t5t_A 358 NDND-VNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVIL-------SETCGA-AEVLGEYCRSVNPFDLVEQ 428 (496)
T ss_dssp ECCC-HHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEE-------ETTBTT-HHHHGGGSEEECTTBHHHH
T ss_pred CCCC-HHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEE-------eCCCCC-HHHhCCCEEEECCCCHHHH
Confidence 9876 78999999999999999877 7799999999996 66665 555421 1111212233 3588999
Q ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 822 VQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 822 ~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
.+...++.+++ +++++..+++++.+.+ +|...|+..+.+.++..+.+
T Consensus 429 A~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 429 AEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 98888887754 6777777888888743 68999999999888887654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.61 E-value=6.9e-07 Score=95.42 Aligned_cols=145 Identities=19% Similarity=0.121 Sum_probs=112.7
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-------HHHHH-HHH
Q 002273 314 KALYYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-------LDKAV-ECY 380 (944)
Q Consensus 314 ~al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~ 380 (944)
++....|.+..+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... ..+++ ..+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3445566665543 445666665544 5899999999999999999999988887753211 11111 122
Q ss_pred HH--HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 381 QM--ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 381 ~~--al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+. ++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 22 23557999999999999999999999999999999999975 7788999999999999999999999999999987
Q ss_pred h
Q 002273 459 R 459 (944)
Q Consensus 459 ~ 459 (944)
+
T Consensus 344 ~ 344 (372)
T 3ly7_A 344 N 344 (372)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.7e-06 Score=91.91 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=115.3
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 678 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
.++..+++.++.+..+...+.+....+.+...| .++++ .|.+.. ++.+ . .+ +++|.+.+.++ ..
T Consensus 244 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~----~~~l----~--~~-~~~v~~~~~~~-~~-- 308 (415)
T 3rsc_A 244 ADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD----PAAL----G--DL-PPNVEAHRWVP-HV-- 308 (415)
T ss_dssp SSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC----GGGG----C--CC-CTTEEEESCCC-HH--
T ss_pred CCCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC----hHHh----c--CC-CCcEEEEecCC-HH--
Confidence 345678888888887777777777777788777 55555 343211 1111 1 23 57899999876 23
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~ 833 (944)
..+..||+++- -+|+.|++||+++|||+|.++-. .-....+..+...|..-.+.. |.++..+...+|.+|++
T Consensus 309 -~ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 383 (415)
T 3rsc_A 309 -KVLEQATVCVT---HGGMGTLMEALYWGRPLVVVPQS-FDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPA 383 (415)
T ss_dssp -HHHHHEEEEEE---SCCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHH
T ss_pred -HHHhhCCEEEE---CCcHHHHHHHHHhCCCEEEeCCc-chHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHH
Confidence 55566999883 25557899999999999998742 223334667777788776654 78999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
.++++++..++. ... ...++.+..+|+.++
T Consensus 384 ~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 384 LLARVEAMRGHV-RRA--GGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHHHHHHHH-HHS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-Hhc--CHHHHHHHHHHHHhh
Confidence 888876655443 222 457788888887765
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-06 Score=96.46 Aligned_cols=160 Identities=9% Similarity=0.016 Sum_probs=103.4
Q ss_pred CCCCeEEEecCCCCcC--CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 679 TNGFITFGSFNNLAKI--TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~--~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++..+++.++.+.... ..+.+....+.+... +.++++.+++.. ++.+. ++ +++|.|.++++ ..+.
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~----~~~l~------~~-~~~v~~~~~~~-~~~l 296 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLD----ISPLG------TL-PRNVRAVGWTP-LHTL 296 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSC----CGGGC------SC-CTTEEEESSCC-HHHH
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcC----hhhhc------cC-CCcEEEEccCC-HHHH
Confidence 4556778888877321 334444444555555 567777655421 11111 34 68999999874 4444
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccccC---CHHHHHHHHHHHhcC
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK---NEDEYVQLALQLASD 831 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d 831 (944)
+..||+++- -+|++|++|||++|||+|+++-..- ....+ ..+...|..-++.. +.+... +|.+|
T Consensus 297 ---l~~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 297 ---LRTCTAVVH---HGGGGTVMTAIDAGIPQLLAPDPRD-QFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD 365 (398)
T ss_dssp ---HTTCSEEEE---CCCHHHHHHHHHHTCCEEECCCTTC-CSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC
T ss_pred ---HhhCCEEEE---CCCHHHHHHHHHhCCCEEEcCCCch-hHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC
Confidence 456999992 3666899999999999999864221 22234 66777788776643 334333 88899
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
++.++++++..++.. .. ..++..+..+|+..
T Consensus 366 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 ESLRTAAREVREEMV-AL--PTPAETVRRIVERI 396 (398)
T ss_dssp HHHHHHHHHHHHHHH-TS--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hC--CCHHHHHHHHHHHh
Confidence 999988877766543 22 47888888888764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-06 Score=92.71 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=97.9
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHH-HHH
Q 002273 73 IVLEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-------LVEAA-ESY 139 (944)
Q Consensus 73 ~al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~ 139 (944)
++....|.+..+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... ..+++ ..+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 4445566654443 556666665543 4678888888888888888888777776642110 11111 122
Q ss_pred HHH--HHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 140 HKA--LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 140 ~~a--l~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
+.+ +...|.+.. ++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|+++
T Consensus 265 ~a~~a~~~~~~~a~-------~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 265 DNIVTLPELNNLSI-------IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHTCGGGTTCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccCCcCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 221 234455544 3555666666678999999999999998864 677788899999999999999999999
Q ss_pred HHhCCCCH
Q 002273 218 ALERPMYA 225 (944)
Q Consensus 218 l~~~p~~~ 225 (944)
+.++|...
T Consensus 337 lrL~P~~~ 344 (372)
T 3ly7_A 337 FNLRPGAN 344 (372)
T ss_dssp HHHSCSHH
T ss_pred HhcCCCcC
Confidence 99988764
|
| >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=97.52 Aligned_cols=142 Identities=17% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.++++++++. .|..+.+++++.++.+..|+.++++. |.+ ...++.+++.+. . .++|.|++..+ ..+.
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~~~~~~l~~~~~---~-~~~v~~~g~~g-~~~~ 268 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLN---PVVREAVFPVLK---G-VRNFVLLDPLE-YGSM 268 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSC---HHHHHHHHHHHT---T-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCC---HHHHHHHHHHhc---c-CCCEEEECCCC-HHHH
Confidence 455667777754 45678899999999888999988876 432 235566655542 2 36999998765 4588
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~ 834 (944)
...|..||+++-+. ||. ++|||++|+|||+.+ |... . +. ..|..-+|..|+++..+...+|.+|++.
T Consensus 269 ~~~~~~ad~~v~~S---~g~-~lEA~a~G~PvI~~~~~~~~~-~-----~~-~~g~g~lv~~d~~~la~~i~~ll~d~~~ 337 (376)
T 1v4v_A 269 AALMRASLLLVTDS---GGL-QEEGAALGVPVVVLRNVTERP-E-----GL-KAGILKLAGTDPEGVYRVVKGLLENPEE 337 (376)
T ss_dssp HHHHHTEEEEEESC---HHH-HHHHHHTTCCEEECSSSCSCH-H-----HH-HHTSEEECCSCHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCcEEEECC---cCH-HHHHHHcCCCEEeccCCCcch-h-----hh-cCCceEECCCCHHHHHHHHHHHHhChHh
Confidence 88999999997554 444 779999999999743 2211 1 12 2343334447999999999999999988
Q ss_pred HHHHHH
Q 002273 835 LANLRM 840 (944)
Q Consensus 835 ~~~~r~ 840 (944)
++++++
T Consensus 338 ~~~~~~ 343 (376)
T 1v4v_A 338 LSRMRK 343 (376)
T ss_dssp HHHHHH
T ss_pred hhhhcc
Confidence 777764
|
| >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=106.22 Aligned_cols=119 Identities=21% Similarity=0.125 Sum_probs=81.9
Q ss_pred EEEccCccCcH------HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH---HHhhcC----
Q 002273 744 VDLLPLILLNH------DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS---LLTKVG---- 809 (944)
Q Consensus 744 v~~~~~~~~~~------~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~---~l~~~g---- 809 (944)
|+|.|.-.+.. ++...|+.||+++-|.-| +.|.|.+|||+||+|||| +++|+- +-...|
T Consensus 494 VIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~-------s~~gG~~d~V~dg~~~~~~ 566 (725)
T 3nb0_A 494 MIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSIT-------TNVSGFGSYMEDLIETNQA 566 (725)
T ss_dssp EEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEE-------ETTBHHHHHHHTTSCHHHH
T ss_pred EEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEE-------eCCCChhhhhhccccccCC
Confidence 56665544332 578888999999988876 889999999999999999 777642 111111
Q ss_pred -Ccc-cc----cCCHHHHHHHHHHH----h-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 810 -LKH-LI----AKNEDEYVQLALQL----A-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 810 -l~~-~v----~~~~~~y~~~a~~l----~-~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
-.. +| ..|.++.++...+. . .|+..+..+|.+.++. +..|+++.+++.++++|+.+..+-
T Consensus 567 ~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~---A~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 567 KDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEAL---SDLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp HHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHG---GGGGBHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhhc
Confidence 112 33 13455544433332 2 3777888888877644 246999999999999999987643
|
| >3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=95.99 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc---ccccchhHH
Q 002273 728 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV---HAHNVGVSL 804 (944)
Q Consensus 728 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~---~~~r~~~~~ 804 (944)
+.+.+.....++ ++.+.+++. +.-..|..+|+++- -+|++|++|++++|+|+|..|-.. -.....|..
T Consensus 224 ~~~~~~~~~~~~---~~~v~~f~~---dm~~~l~~aDlvI~---raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~ 294 (365)
T 3s2u_A 224 EITAERYRTVAV---EADVAPFIS---DMAAAYAWADLVIC---RAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEF 294 (365)
T ss_dssp HHHHHHHHHTTC---CCEEESCCS---CHHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHH
T ss_pred ccccceeccccc---ccccccchh---hhhhhhccceEEEe---cCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHH
Confidence 455566667766 355567754 34456677999983 267899999999999988765221 112344677
Q ss_pred HhhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 805 LTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 805 l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
|...|...+|.. |.++..+...+|.+|++.+++|+++.|+.. .-.-.++.++.+|++-+.
T Consensus 295 l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~---~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 295 LVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLA---KPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHC--
T ss_pred HHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHcc
Confidence 888898888754 578899999999999999999999988752 222355666666655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.6e-07 Score=81.51 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~-p-~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
...+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++.+++..++.+ | +..+++|+||..+.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 466778888888888889999999999999988 6679999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhhCCCChhhhhh
Q 002273 448 YEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 448 ~~~al~l~P~~~~a~~~ 464 (944)
++++++++|++.++..-
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 99999999999877653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=74.54 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 387 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|++++|+.+|+++++.+|+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57788888888888876665 68888888888888888888888888888888999999999999888888843
|
| >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.1e-06 Score=79.79 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
..++|.++++.. ......+....+.+...|- ++++++++... .++ +++|.|.++++ ..+.+.
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~-~~~~~~g~~~~-------------~~~-~~~v~~~~~~~-~~~~l~- 83 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQIPQ-KVLWRFDGNKP-------------DTL-GLNTRLYKWIP-QNDLLG- 83 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTSSS-EEEEECCSSCC-------------TTC-CTTEEEESSCC-HHHHHT-
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhCCC-eEEEEECCcCc-------------ccC-CCcEEEecCCC-HHHHhc-
Confidence 356677777763 4445556666666666664 44444433111 134 57899999987 455554
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~ 836 (944)
+..||+++- .+|++|++|||++|+|+|..+-... ...-+..+...|..-++.. |.++..+...++..|++.++
T Consensus 84 ~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~~~-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 159 (170)
T 2o6l_A 84 HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLFAD-QPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKE 159 (170)
T ss_dssp STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHHH
T ss_pred CCCcCEEEE---cCCccHHHHHHHcCCCEEeccchhh-HHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHHHHH
Confidence 488999994 3788999999999999999874311 1233556777787766542 78899999999999986433
Q ss_pred H
Q 002273 837 N 837 (944)
Q Consensus 837 ~ 837 (944)
+
T Consensus 160 ~ 160 (170)
T 2o6l_A 160 N 160 (170)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-06 Score=72.03 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 78 DSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876665 6888888999999999998888888999999999999999999988888873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-06 Score=76.48 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
..+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++.+++..++.+ | +..++++++|..++++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44555566666666666777777777777766 5557777777777776 5 45667777777777777777777777
Q ss_pred HHHHHhCCCCHHHHHH
Q 002273 415 EKAIAANPTYAEAYNN 430 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~ 430 (944)
+++++.+|++..+...
T Consensus 95 ~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHhcCCCCHHHHHH
Confidence 7777777777665543
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-06 Score=94.48 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=112.3
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
+++.++|.++.+..+...+.+....+.+...|+.++ |+.|.+.. .+.+ + .+ +++|.|.++++ ..
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~----~~~l----~--~~-~~~v~~~~~~~-~~--- 294 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT----PAEL----G--EL-PDNVEVHDWVP-QL--- 294 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C----GGGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC----hHHh----c--cC-CCCeEEEecCC-HH---
Confidence 345678888888776566777777777766667666 45554311 1111 1 24 57999999876 22
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~ 834 (944)
..|..+|+++- -+|++|++|||++|+|+|+.+-... ....+..+...|..-++.. |.++..+...++..|++.
T Consensus 295 ~~l~~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~~-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 370 (430)
T 2iyf_A 295 AILRQADLFVT---HAGAGGSQEGLATATPMIAVPQAVD-QFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEV 370 (430)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHH
T ss_pred HHhhccCEEEE---CCCccHHHHHHHhCCCEEECCCccc-hHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHH
Confidence 56788999884 3566899999999999999874311 1222445566677655543 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
++++++..++.... +..+..+..+|+.+++..
T Consensus 371 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 371 ARRLRRIQAEMAQE---GGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHhc---CcHHHHHHHHHHHhhccc
Confidence 88877766654332 366777777777766544
|
| >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.1e-06 Score=90.33 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=100.1
Q ss_pred CCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.+++.+.++ .-|..+.+++++.++.+..|+.++++..++ .+..++.+.+. .+. .++|.|.+..+ ..++
T Consensus 229 ~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~--~~~~~~~l~~~---~~~-~~~v~~~~~lg-~~~~ 301 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHL--NPNVREPVNKL---LKG-VSNIVLIEPQQ-YLPF 301 (396)
T ss_dssp TSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHH---TTT-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCC--ChHHHHHHHHH---HcC-CCCEEEeCCCC-HHHH
Confidence 44555556644 235457899999999988999888875332 13455555443 244 46899988875 5789
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~ 836 (944)
...|..||+++-++ | ++++||+++|+|||+.... .+|. .+ ...|-.-+|..|.++.++...+|.+|++.++
T Consensus 302 ~~l~~~ad~vv~~S---G-g~~~EA~a~G~PvV~~~~~--~~~~--e~-v~~G~~~lv~~d~~~l~~ai~~ll~d~~~~~ 372 (396)
T 3dzc_A 302 VYLMDRAHIILTDS---G-GIQEEAPSLGKPVLVMRET--TERP--EA-VAAGTVKLVGTNQQQICDALSLLLTDPQAYQ 372 (396)
T ss_dssp HHHHHHCSEEEESC---S-GGGTTGGGGTCCEEECCSS--CSCH--HH-HHHTSEEECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhcCEEEECC---c-cHHHHHHHcCCCEEEccCC--Ccch--HH-HHcCceEEcCCCHHHHHHHHHHHHcCHHHHH
Confidence 99999999997443 4 4449999999999985321 1221 12 2336555566689999999999999998777
Q ss_pred HHHH
Q 002273 837 NLRM 840 (944)
Q Consensus 837 ~~r~ 840 (944)
++++
T Consensus 373 ~m~~ 376 (396)
T 3dzc_A 373 AMSQ 376 (396)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6665
|
| >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.1e-06 Score=93.31 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=102.2
Q ss_pred CCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
+++.+++.+.++. -|..+.+++++.++.+..|+.++++..++ .+..++.+.+. .+. .++|.|.+... ..+
T Consensus 222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~--~~~~~~~l~~~---~~~-~~~v~l~~~l~-~~~ 294 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHL--NPAVREKAMAI---LGG-HERIHLIEPLD-AID 294 (403)
T ss_dssp TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHH---HTT-CTTEEEECCCC-HHH
T ss_pred cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCC--CHHHHHHHHHH---hCC-CCCEEEeCCCC-HHH
Confidence 4455667777763 24447899999999999999888876433 22344444433 344 36899999876 578
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~ 835 (944)
+...|..||+++-.+ ||.+ +||+++|+|||+.+-. .+|.- +. ..|-.-+|..|.++.++...+|..|++.+
T Consensus 295 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~PvV~~~~~--~~~~e--~v-~~g~~~lv~~d~~~l~~ai~~ll~~~~~~ 365 (403)
T 3ot5_A 295 FHNFLRKSYLVFTDS---GGVQ-EEAPGMGVPVLVLRDT--TERPE--GI-EAGTLKLIGTNKENLIKEALDLLDNKESH 365 (403)
T ss_dssp HHHHHHHEEEEEECC---HHHH-HHGGGTTCCEEECCSS--CSCHH--HH-HHTSEEECCSCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHhCCCEEEecCC--Ccchh--he-eCCcEEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 999999999997432 4444 9999999999997421 12221 12 34644455569999999999999999887
Q ss_pred HHHHH
Q 002273 836 ANLRM 840 (944)
Q Consensus 836 ~~~r~ 840 (944)
+++++
T Consensus 366 ~~m~~ 370 (403)
T 3ot5_A 366 DKMAQ 370 (403)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=70.15 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-------SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (944)
.++...+.+|..++..|+|..|+..|+++++.. +....++..+|.++.++|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 467888999999999999999999999998853 2457788888999999999999999999998888888887
Q ss_pred HHHHH
Q 002273 119 HTHCG 123 (944)
Q Consensus 119 ~~~la 123 (944)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 76665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=69.90 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
.-++.+|..++..++|..|+.+|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344455555555555555555555555431 1223344444444444444444444444444444444444443
Q ss_pred H
Q 002273 431 L 431 (944)
Q Consensus 431 l 431 (944)
+
T Consensus 86 ~ 86 (104)
T 2v5f_A 86 L 86 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.9e-06 Score=92.93 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=75.4
Q ss_pred HCCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 002273 369 DRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLG 432 (944)
Q Consensus 369 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~la 432 (944)
..|+|++|+..|++++++ .|+++ .++.++|.+|..+|+|++|+.++++++++ +|+....+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999876 45554 47888999999999999999999999876 344456788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCChhh
Q 002273 433 VLYRDAGSISLAIDAYEQCLKI-----DPDSRNA 461 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~l-----~P~~~~a 461 (944)
.+|..+|++++|+..|++|+++ -|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999875 4666544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.2e-06 Score=92.93 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHcCChHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCH---HHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNN 396 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~ 396 (944)
+...|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666666666554 2222 345555566666666666666666665544 23332 34555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 397 LGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 397 la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
+|.+|..+|++++|+.+|++|+++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.3e-06 Score=90.65 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=79.8
Q ss_pred HHcCChHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCH---HHHHHH
Q 002273 334 GEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNNL 397 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l 397 (944)
...|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999986 4444 567889999999999999999999999976 35554 578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 428 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~-----~p~~~~a~ 428 (944)
|.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999986 56665543
|
| >4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.6e-05 Score=85.01 Aligned_cols=163 Identities=15% Similarity=0.049 Sum_probs=102.6
Q ss_pred CCCCCeEEEecCCCCc--CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNNLAK--ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K--~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
.++..++|.+|.+... .....+....+.+...+--++|..+.... ...+--+++|.+.++++ +.+
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~------------~~~~~~~~~v~~~~~~p-~~~ 300 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL------------ALLGELPANVRVVEWIP-LGA 300 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC------------CCCCCCCTTEEEECCCC-HHH
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc------------cccccCCCCEEEEeecC-HHH
Confidence 3456677888876533 33455666667777776666665543211 11122268999998876 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..+|+|+ ..+|.+|++|||++|||+|++|-..- ...-+..+...|+.-.+. +.+.-.+...++.+|++.+
T Consensus 301 ---lL~~~~~~v---~h~G~~s~~Eal~~GvP~v~~P~~~d-Q~~na~~v~~~G~g~~l~-~~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 301 ---LLETCDAII---HHGGSGTLLTALAAGVPQCVIPHGSY-QDTNRDVLTGLGIGFDAE-AGSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp ---HHTTCSEEE---ECCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEECC-TTTCSHHHHHHHHHCHHHH
T ss_pred ---Hhhhhhhee---ccCCccHHHHHHHhCCCEEEecCccc-HHHHHHHHHHCCCEEEcC-CCCchHHHHHHHHcCHHHH
Confidence 456799987 25788899999999999999874321 223345566677764443 2222344566788999877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
++.+ ++++.+...+ .+...++.||+.
T Consensus 373 ~~a~-~l~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 373 EAAL-RVRQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp HHHH-HHHHHHHTSC--CHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCC--CHHHHHHHHHHh
Confidence 6654 4555565554 678888888864
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-05 Score=84.08 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=102.8
Q ss_pred CCCeEEEecCCCCcC-----CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 680 NGFITFGSFNNLAKI-----TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~-----~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
+..++|.++++.... ....+....+.+... +.++++..++ ...+.+. . + +++|.+ ++++ ..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~----~~~~~l~----~--~-~~~v~~-~~~~-~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPD----TVAEALR----A--E-VPQARV-GWTP-LD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCH----HHHHHHH----H--H-CTTSEE-ECCC-HH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCC----CCHHhhC----C--C-CCceEE-cCCC-HH
Confidence 345677888776543 233344333444443 5666665432 2222222 2 3 578999 8875 34
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcC
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASD 831 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d 831 (944)
+ .+..||+++-. +|++|++|||++|||+|+++-..-. ...+..+...|..-++.. |.++..+...++..|
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~dq-~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGSVL-EAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSHHH-HHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcccc-hHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 4 45789999953 6677999999999999998752111 223445566677665542 788998888899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++.++++++..++. ...+ ..++.+..+|+...
T Consensus 348 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 348 DTYARRAQDLSREI-SGMP--LPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHHHHHH-HTSC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCC--CHHHHHHHHHHHhh
Confidence 98888777655544 3232 56677777666543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00055 Score=78.23 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcC-CCCHHHHH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLD-PQNACAHT 120 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~ 120 (944)
...-..+.+.|++++|+++|+++.+..- -+...|..+..++...+ ..++|.+.|+++.+.. .-+...|.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3344566677777777777777766532 24555555555544333 2456666666655432 12445566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNL 197 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 197 (944)
.+...|.+.|++++|.+.|++..+.. |+ ...|..+...+.+.|+.++|.++|+++.+..- -+...|..+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPR--------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 66666666666666666666655432 22 11244444455555666666666655554421 134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 002273 198 GVVYSELMQYDTALGCYEKAAL 219 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~ 219 (944)
...|.+.|+.++|.+++++..+
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHH
Confidence 5555556666666655555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=89.14 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=82.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Q 002273 365 VIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAY 428 (944)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~ 428 (944)
.-+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++. +|+....+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455789999999999999976 3455 458899999999999999999999999976 33445679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChhhh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKI-----DPDSRNAG 462 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l-----~P~~~~a~ 462 (944)
++||.+|..+|++++|+.+|++|+++ -|+++...
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999999985 56766544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00062 Score=77.83 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=130.9
Q ss_pred HhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 002273 298 LVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLGVI 366 (944)
Q Consensus 298 l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~la~~ 366 (944)
.+.+.|++++|+++|+++.+.. .-+...|..+-.++...+. .++|.++|++..... .-+...|..+...
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4677899999999999998764 3356778777777766554 688999999988763 3358889999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~a~~~la~~~~~~g~~~e 443 (944)
|.+.|+.++|.++|++..+.. .-+...|..+-..|.+.|+.++|.++|++..+.. |+ ...|..+...|.+.|+.++
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHH
Confidence 999999999999999988763 2357889999999999999999999999998863 44 7789999999999999999
Q ss_pred HHHHHHHHHhh
Q 002273 444 AIDAYEQCLKI 454 (944)
Q Consensus 444 A~~~~~~al~l 454 (944)
|.+.+++..+.
T Consensus 194 A~~ll~~Mr~~ 204 (501)
T 4g26_A 194 VYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988664
|
| >4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.6e-06 Score=89.80 Aligned_cols=324 Identities=13% Similarity=0.066 Sum_probs=172.2
Q ss_pred CcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCC-hhhHHHHHHHh-hhCCceEeccCCC--------HH
Q 002273 510 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVM-KKGGIWRDIYGID--------EK 579 (944)
Q Consensus 510 ~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d-~~t~~~~~~~~-~~~~~~~~~~~~~--------~~ 579 (944)
-+++..+.+ ..|-...+.+++...+.. ||+.+..++..-| ...+.+...+. ...+...++.+-+ -.
T Consensus 9 ~~~~~~v~G---tRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 84 (385)
T 4hwg_A 9 MLKVMTIVG---TRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIE 84 (385)
T ss_dssp CCEEEEEEC---SHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHH
T ss_pred hhheeEEEE---cCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHH
Confidence 356666643 445555566666555433 8888887775533 22222221110 0123333332222 23
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhc-cCCcceeeecccCCCCCCCCCccE------------EEecCCCCCccc-
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTGLPTIDY------------RITDSLADPPET- 645 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a-~r~ApvQ~~~~G~p~t~g~~~~Dy------------~i~d~~~~p~~~- 645 (944)
++.+.+++.++|++|=.++.+..-. .+.| .+=-|| +..-| |+.+.|- .++|-++.|.+.
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv-~h~ea-----glrs~~~~~pee~nR~~~~~~a~~~~~~te~~ 157 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPI-FHMEA-----GNRCFDQRVPEEINRKIIDHISDVNITLTEHA 157 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCE-EEESC-----CCCCSCTTSTHHHHHHHHHHHCSEEEESSHHH
T ss_pred HHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCE-EEEeC-----CCccccccCcHHHHHHHHHhhhceeecCCHHH
Confidence 4677888999999986544332221 2222 222344 22222 2222220 122333333322
Q ss_pred cccc------ccceEEcCCCccc---cC-CCCCCCCCCCCCCCCCCCeEEEecCCCC-----cCCHHHHHHHHHHHhHcC
Q 002273 646 KQKH------VEELIRLPECFLC---YT-PSPEAGPVCPTPALTNGFITFGSFNNLA-----KITPKVLQVWARILCAVP 710 (944)
Q Consensus 646 ~~~~------~e~~~~lp~~~~~---~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----K~~~~~~~~~~~il~~~p 710 (944)
...+ .|++....+..+. +. +...........+++.+.+++.+..+.. |..+.+++++.++.+..
T Consensus 158 ~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~- 236 (385)
T 4hwg_A 158 RRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY- 236 (385)
T ss_dssp HHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-
Confidence 1111 3556666554322 10 0001111112234444566677777643 44467888888888765
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHc-C-CC-CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCc
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQL-G-LE-SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP 787 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-g-i~-~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvP 787 (944)
+..+++...+ . +++.+++. | +. .++|.+.+... ..++...+..||+++-.. || .+.||+++|+|
T Consensus 237 ~~~vv~p~~p----~----~~~~l~~~~~~~~~~~~v~l~~~lg-~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~P 303 (385)
T 4hwg_A 237 NFLIIFSTHP----R----TKKRLEDLEGFKELGDKIRFLPAFS-FTDYVKLQMNAFCILSDS---GT-ITEEASILNLP 303 (385)
T ss_dssp CCEEEEEECH----H----HHHHHHTSGGGGGTGGGEEECCCCC-HHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCC
T ss_pred CeEEEEECCh----H----HHHHHHHHHHHhcCCCCEEEEcCCC-HHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCC
Confidence 6666654332 3 44555555 5 42 36899988765 568999999999998322 44 57999999999
Q ss_pred EEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 788 CVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 788 vvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
||+++..+ .|.- . ...|-.-+|..|.++.++....|.+|+..++.+++...... ..-...++.++.++..+
T Consensus 304 vv~~~~~t--er~e--~-v~~G~~~lv~~d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 304 ALNIREAH--ERPE--G-MDAGTLIMSGFKAERVLQAVKTITEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp EEECSSSC--SCTH--H-HHHTCCEECCSSHHHHHHHHHHHHTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred EEEcCCCc--cchh--h-hhcCceEEcCCCHHHHHHHHHHHHhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 99986532 1222 1 23365556667999999999999999876655543332210 11123556666666654
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=81.09 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=106.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
++.++|.++.+......+.+....+.+.. ++.++++ .|.+... +.+ ..+ +++|.+.++++ +. .
T Consensus 254 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~----~~~------~~~-~~~v~~~~~~~-~~---~ 317 (424)
T 2iya_A 254 GRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDP----ADL------GEV-PPNVEVHQWVP-QL---D 317 (424)
T ss_dssp SCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCG----GGG------CSC-CTTEEEESSCC-HH---H
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCCh----HHh------ccC-CCCeEEecCCC-HH---H
Confidence 45677888887765556666655555554 4555544 4432111 111 123 57899999876 22 5
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..+|+++- -+|.+|++||+++|||+|+++-..- ...-+..+...|..-.+.. |.++..+...++.+|++.+
T Consensus 318 ~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~ 393 (424)
T 2iya_A 318 ILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIAE-QTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVA 393 (424)
T ss_dssp HHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCccc-hHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHH
Confidence 6778999884 3667899999999999999885321 2334555667787665542 8889999999999999877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+++++..+.. .. .......+..+|+..+
T Consensus 394 ~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 394 ERLAAVRQEI-RE--AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHH-HT--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-Hh--cCcHHHHHHHHHHHHh
Confidence 7666544433 22 2345667777776653
|
| >2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=83.13 Aligned_cols=160 Identities=10% Similarity=0.035 Sum_probs=103.7
Q ss_pred CCCeEEEecCCC-------CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccC
Q 002273 680 NGFITFGSFNNL-------AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 680 ~~~~~f~~~~~~-------~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
+..++|.++.+. .|....+++.+.+ . +.++++.+++.. .+.+ . ++ +++|.+.++++
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~g~~~----~~~l----~--~~-~~~v~~~~~~~- 328 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD----V-DAEIIATFDAQQ----LEGV----A--NI-PDNVRTVGFVP- 328 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT----S-SSEEEECCCTTT----TSSC----S--SC-CSSEEECCSCC-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc----C-CCEEEEEECCcc----hhhh----c--cC-CCCEEEecCCC-
Confidence 345556666644 3555556655443 2 456666544311 1111 1 34 57999999876
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHh
Q 002273 753 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 829 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~ 829 (944)
.. ..+..||+++- -+|++|++|||++|||+|.++-... ...-+..+...|..-.+.. |.++..+...++.
T Consensus 329 ~~---~ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 329 MH---ALLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGWD-TGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401 (441)
T ss_dssp HH---HHGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHH
T ss_pred HH---HHHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCccc-HHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHh
Confidence 33 34688999994 3677899999999999999875221 1233455667787766653 7889999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 830 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 830 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+|++.++++++..++.. . ....+..+..+|+...
T Consensus 402 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 402 DDPAHRAGAARMRDDML-A--EPSPAEVVGICEELAA 435 (441)
T ss_dssp HCHHHHHHHHHHHHHHH-T--SCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHH
Confidence 99988888776655443 2 2467888888887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.78 E-value=9.6e-05 Score=65.53 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~l~~al~~~-p-~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
...+.+.|.+....++...++.+++|+++.+..+... ++.+++..+..+ | ..-+.++.||..+.++|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666666666677777777777777666555 777777776665 4 3456777788888888888888888
Q ss_pred HHHHHhhCCCChhhhh
Q 002273 448 YEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 448 ~~~al~l~P~~~~a~~ 463 (944)
++.+|+..|++.++..
T Consensus 97 ~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8888888887776654
|
| >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00025 Score=79.44 Aligned_cols=158 Identities=9% Similarity=-0.010 Sum_probs=97.8
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 682 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
.++|.++++.. .....++...+.+...+--.+|+.|.+... ..++ +++|.+.++++ ..+ .+.
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~~------------~~~~-~~~v~~~~~~~-~~~---~l~ 300 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADLV------------LPDD-GADCFAIGEVN-HQV---LFG 300 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTCC------------CSSC-GGGEEECSSCC-HHH---HGG
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCccc------------ccCC-CCCEEEeCcCC-hHH---HHh
Confidence 45677777664 445666666666666664444444433110 0233 57899999986 333 468
Q ss_pred cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHH
Q 002273 762 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANL 838 (944)
Q Consensus 762 ~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~~ 838 (944)
.||+++- -+|.+|++||+++|||+|+++-..- ...-+..+...|..-.+.. |.++..+...++ .|++.++++
T Consensus 301 ~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~ 375 (415)
T 1iir_A 301 RVAAVIH---HGGAGTTHVAARAGAPQILLPQMAD-QPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARA 375 (415)
T ss_dssp GSSEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHH
T ss_pred hCCEEEe---CCChhHHHHHHHcCCCEEECCCCCc-cHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHH
Confidence 8999994 3667799999999999999875221 1234455677787666643 788888888888 998777666
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 839 RMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 839 r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
++..++. . ..-..+..+..+|...
T Consensus 376 ~~~~~~~-~--~~~~~~~~~~~i~~~~ 399 (415)
T 1iir_A 376 TAVAGTI-R--TDGAAVAARLLLDAVS 399 (415)
T ss_dssp HHHHHHS-C--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-h--hcChHHHHHHHHHHHH
Confidence 6544432 1 2223445555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00057 Score=60.60 Aligned_cols=91 Identities=8% Similarity=-0.068 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 341 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMIE 415 (944)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~l~ 415 (944)
.+...|.+....++.+.++.+++|+++....+... ++.+++..++.. | ..-+.++.+|..++++|+|++|+.+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444455555566666666655554443 566666655544 3 234566666666666666666666666
Q ss_pred HHHHhCCCCHHHHHHH
Q 002273 416 KAIAANPTYAEAYNNL 431 (944)
Q Consensus 416 ~al~~~p~~~~a~~~l 431 (944)
.+++..|++..+....
T Consensus 99 ~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHH
Confidence 6666666665554433
|
| >3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00033 Score=75.42 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=88.7
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhccc
Q 002273 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762 (944)
Q Consensus 683 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 762 (944)
.+++-.+++-|. ..+..+ .|+.+|+|+|.+... .+ + +|.|+|.++ +++....++.
T Consensus 179 ~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~~--------------~l-~-nV~f~G~~~-~~el~~~l~~ 233 (339)
T 3rhz_A 179 REIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNVE--------------LP-Q-NVHKINYRP-DEQLLMEMSQ 233 (339)
T ss_dssp EEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCCC--------------CC-T-TEEEEECCC-HHHHHHHHHT
T ss_pred cEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCccc--------------Cc-C-CEEEeCCCC-HHHHHHHHHh
Confidence 456666677762 222211 389999999977321 23 3 999999998 6888888877
Q ss_pred ccEEecCCC--------CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHH
Q 002273 763 MDISLDTFP--------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 763 ~Di~Ld~~~--------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~ 834 (944)
+|+.|-+.+ ++......|+|++|+|||+...... +.+...-|+ .+++.+.++.++....+ +++.
T Consensus 234 ~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~-----~~~v~~~~~-G~~~~~~~e~~~~i~~l--~~~~ 305 (339)
T 3rhz_A 234 GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIAN-----QELIENNGL-GWIVKDVEEAIMKVKNV--NEDE 305 (339)
T ss_dssp EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTT-----THHHHHHTC-EEEESSHHHHHHHHHHC--CHHH
T ss_pred CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhH-----HHHHHhCCe-EEEeCCHHHHHHHHHHh--CHHH
Confidence 788776411 3446679999999999998443222 123333343 45667889988888776 4677
Q ss_pred HHHHHHHHHHH
Q 002273 835 LANLRMSLRDL 845 (944)
Q Consensus 835 ~~~~r~~~~~~ 845 (944)
+++|++..++.
T Consensus 306 ~~~m~~na~~~ 316 (339)
T 3rhz_A 306 YIELVKNVRSF 316 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88998888775
|
| >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0013 Score=74.84 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-C-H-HHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-C-D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~-~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
+..++|.||......++..+....+-|...+--.+|..+.... . . ...+.+.++ + ++++.+.++.+ +.
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-----~-~~~~~v~~~~p-q~-- 364 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE-----I-ADRGLIASWCP-QD-- 364 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHH-----H-TTTEEEESCCC-HH--
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHh-----c-CCCEEEEeecC-HH--
Confidence 4568899999877777777777777777776666676653210 0 0 012233322 1 47888888876 33
Q ss_pred HHhcc--cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHh-hcCCccccc--CCHHHHHHHHHHHhcC
Q 002273 757 MQAYS--LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA--KNEDEYVQLALQLASD 831 (944)
Q Consensus 757 ~~~~~--~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~gl~~~v~--~~~~~y~~~a~~l~~d 831 (944)
..+. .+|+|+ ..+|.+|++||+++|||+|++|-..- ...-+..+. ..|..-.+. -+.++..+...++..|
T Consensus 365 -~~L~h~~~~~~v---th~G~~s~~Eal~~GvP~i~~P~~~d-Q~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~ 439 (482)
T 2pq6_A 365 -KVLNHPSIGGFL---THCGWNSTTESICAGVPMLCWPFFAD-QPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAG 439 (482)
T ss_dssp -HHHTSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTS
T ss_pred -HHhcCCCCCEEE---ecCCcchHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcC
Confidence 3443 455677 25888999999999999999985322 233445454 678776664 3778888888888888
Q ss_pred HHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRD 844 (944)
Q Consensus 832 ~~~~~~~r~~~~~ 844 (944)
++ .+.+|++.++
T Consensus 440 ~~-~~~~r~~a~~ 451 (482)
T 2pq6_A 440 DK-GKKMKQKAME 451 (482)
T ss_dssp HH-HHHHHHHHHH
T ss_pred Cc-HHHHHHHHHH
Confidence 85 3455555543
|
| >1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00064 Score=76.06 Aligned_cols=137 Identities=7% Similarity=-0.062 Sum_probs=86.2
Q ss_pred CeEEEecCCCCc-CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 682 FITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 682 ~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
.++|.++++... .....++...+.+...+--.+|..|.+.. + . ..+ +++|.+.++++ ..+ .+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~-----~------~~~-~~~v~~~~~~~-~~~---ll 300 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V-----L------PDD-RDDCFAIDEVN-FQA---LF 300 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-C-----C------SCC-CTTEEEESSCC-HHH---HG
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc-c-----c------cCC-CCCEEEeccCC-hHH---Hh
Confidence 456777776642 23344444445555554333343343211 0 0 133 57899989876 333 45
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHHHHH
Q 002273 761 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 761 ~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
..||+++- -+|.+|++||+++|||+|+++-..- ...-+..+...|..-.+. -|.++..+...++ .|++.+++
T Consensus 301 ~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~ 375 (416)
T 1rrv_A 301 RRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNTD-QPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRAR 375 (416)
T ss_dssp GGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSBT-HHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHH
T ss_pred ccCCEEEe---cCChhHHHHHHHcCCCEEEccCCCC-cHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHH
Confidence 88999994 4677799999999999999885221 123344566677766664 3788888888888 99865555
Q ss_pred HHH
Q 002273 838 LRM 840 (944)
Q Consensus 838 ~r~ 840 (944)
+++
T Consensus 376 ~~~ 378 (416)
T 1rrv_A 376 AEA 378 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00095 Score=75.35 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=97.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
++.++|.||+......++.+....+-+...+--.+|..+... .+.+.+.+.++. ++++.+.++.+ +. ..
T Consensus 270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~-~~~l~~~~~~~~------~~~~~v~~w~p-q~---~v 338 (456)
T 2c1x_A 270 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA-RVHLPEGFLEKT------RGYGMVVPWAP-QA---EV 338 (456)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG-GGGSCTTHHHHH------TTTEEEESCCC-HH---HH
T ss_pred CcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcc-hhhCCHHHHhhc------CCceEEecCCC-HH---HH
Confidence 456889999988777777777666666665555667665431 001112222211 46888888876 33 33
Q ss_pred cc--cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc-CCccccc---CCHHHHHHHHHHHhcCHH
Q 002273 760 YS--LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLIA---KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 760 ~~--~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~-gl~~~v~---~~~~~y~~~a~~l~~d~~ 833 (944)
+. .+|+|+- .+|.+|++||+++|||+|++|--.- ...-+..+... |..-.+. -+.++..+...++..|++
T Consensus 339 L~h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~~d-Q~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~ 414 (456)
T 2c1x_A 339 LAHEAVGAFVT---HCGWNSLWESVAGGVPLICRPFFGD-QRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK 414 (456)
T ss_dssp HTSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH
T ss_pred hcCCcCCEEEe---cCCcchHHHHHHhCceEEecCChhh-HHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc
Confidence 44 7889882 5888999999999999999985322 23345566665 7766554 267888888888888874
Q ss_pred HHHHHHHHHHH
Q 002273 834 ALANLRMSLRD 844 (944)
Q Consensus 834 ~~~~~r~~~~~ 844 (944)
...+|++.++
T Consensus 415 -~~~~r~~a~~ 424 (456)
T 2c1x_A 415 -GKKLRENLRA 424 (456)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4455554443
|
| >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0015 Score=73.20 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=97.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+++.++|.||++....+++.+...+.-|...+--.||..+.. ....+-+.+.+. + ++|+.+.++.+ +. .
T Consensus 271 ~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~-----~~~~lp~~~~~~-~-~~~~~vv~w~P-q~---~ 339 (454)
T 3hbf_A 271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD-----PKEKLPKGFLER-T-KTKGKIVAWAP-QV---E 339 (454)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC-----HHHHSCTTHHHH-T-TTTEEEESSCC-HH---H
T ss_pred CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-----chhcCCHhHHhh-c-CCceEEEeeCC-HH---H
Confidence 456788999999988898888888888888777777777643 111111112111 2 47888889886 33 3
Q ss_pred hccccc--EEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhh-cCCccccc---CCHHHHHHHHHHHhcCH
Q 002273 759 AYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA---KNEDEYVQLALQLASDV 832 (944)
Q Consensus 759 ~~~~~D--i~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~-~gl~~~v~---~~~~~y~~~a~~l~~d~ 832 (944)
.+..+| +|+ ..+|.+|++||++.|||+|++|--.- ...-+..+.. +|..-.|. -+.++..+...++..|+
T Consensus 340 vL~h~~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~~D-Q~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 340 ILKHSSVGVFL---THSGWNSVLECIVGGVPMISRPFFGD-QGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp HHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred HHhhcCcCeEE---ecCCcchHHHHHHcCCCEecCccccc-HHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 445555 666 24788899999999999999984221 2233455555 47765553 36778777777888774
Q ss_pred HHHHHHHHHHH
Q 002273 833 TALANLRMSLR 843 (944)
Q Consensus 833 ~~~~~~r~~~~ 843 (944)
....+|++.+
T Consensus 416 -~~~~~r~~a~ 425 (454)
T 3hbf_A 416 -KGGIMRQKIV 425 (454)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 2334444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0023 Score=57.86 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 353 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPN--------FSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~al 418 (944)
.|++++.|........+.|+. ++-++.|++|+..-|. ....|..+|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344444444444444444444 4444455555444332 12344444433 34466666666776666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 419 ~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+.+...+.+|...|..-.++|+...|.+.+.+++.+.|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666666666666666666677777777777777776665543
|
| >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.002 Score=71.63 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=96.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+..++|.++.+... ..+.+....+.+...+ .++++..+.... ...+. +++|.+.++++ ..+ .
T Consensus 220 ~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~-~~vv~~~g~~~~-----------~~~~~-~~~v~~~~~~~-~~~---l 281 (404)
T 3h4t_A 220 GSPPVYVGFGSGPA-PAEAARVAIEAVRAQG-RRVVLSSGWAGL-----------GRIDE-GDDCLVVGEVN-HQV---L 281 (404)
T ss_dssp SSCCEEECCTTSCC-CTTHHHHHHHHHHHTT-CCEEEECTTTTC-----------CCSSC-CTTEEEESSCC-HHH---H
T ss_pred CCCeEEEECCCCCC-cHHHHHHHHHHHHhCC-CEEEEEeCCccc-----------ccccC-CCCEEEecCCC-HHH---H
Confidence 34566777777655 4556666666666665 444444322110 01133 57899998876 333 4
Q ss_pred cccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 760 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 760 ~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
+..||+++ . +|..|+.||+++|||+|.++-..- ...-+..+...|..-.+.. |.++..+...++.+ ++.+
T Consensus 282 l~~~d~~v----~~gG~~t~~Eal~~GvP~v~~p~~~d-Q~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~ 355 (404)
T 3h4t_A 282 FGRVAAVV----HHGGAGTTTAVTRAGAPQVVVPQKAD-QPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIR 355 (404)
T ss_dssp GGGSSEEE----ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHH
T ss_pred HhhCcEEE----ECCcHHHHHHHHHcCCCEEEcCCccc-HHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHH
Confidence 46799999 5 555899999999999999873211 2233455677788766643 78889888888888 7655
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
+++++..+ .+. . -..++.+..+|..+
T Consensus 356 ~~~~~~~~-~~~--~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 356 ARAAAVAG-TIR--T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHT-TCC--C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHh--h-hHHHHHHHHHHHHH
Confidence 55443222 221 1 23445555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0021 Score=58.11 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=95.2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPHC--------AEACNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
-..|.+++.|........+.|+. ++-++.|++++..-|.. ...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999999999 89999999999886642 4566666755 566999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 383 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
++++....+.+|...|..-.++|+...|.+.+.+++.+.|...+.+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999888999999999999999999999999999999999865543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=60.32 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI 386 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (944)
+++.-...+...+.|+.|+-....++... |+. .+++..+|..++..++|..|...|+++++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44555566677777887777777766553 221 346777788888888888888888887665
|
| >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0054 Score=69.35 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
++.++|.||.... .++.+.+....+-|...+--.+|..+.. .+...+.+.++... ++|+.+.++.+ +.+.+
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~~l~~~~~~~~~~----~~~~~v~~w~p-q~~vL- 346 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE--KKVFPEGFLEWMEL----EGKGMICGWAP-QVEVL- 346 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC--GGGSCTTHHHHHHH----HCSEEEESSCC-HHHHH-
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC--cccCChhHHHhhcc----CCCEEEEccCC-HHHHh-
Confidence 4568899999888 7887777777777777665566666542 00011122222210 35777778876 33322
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHH-HhhcCCccccc---------CCHHHHHHHHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA---------KNEDEYVQLALQL 828 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~-l~~~gl~~~v~---------~~~~~y~~~a~~l 828 (944)
....+|+|+- .+|.+|++||+++|||+|++|-..-. ..-+.. ....|..-.+. -+.++..+...++
T Consensus 347 ~h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~~dQ-~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 347 AHKAIGGFVS---HCGWNSILESMWFGVPILTWPIYAEQ-QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp HSTTEEEEEE---CCCHHHHHHHHHTTCCEEECCCSTTH-HHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCccCeEEe---cCCchhHHHHHHcCCCeeeccchhhh-HHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 2246888882 58889999999999999999863332 233444 46778876661 2567777666677
Q ss_pred hc
Q 002273 829 AS 830 (944)
Q Consensus 829 ~~ 830 (944)
..
T Consensus 423 l~ 424 (463)
T 2acv_A 423 MD 424 (463)
T ss_dssp TC
T ss_pred Hh
Confidence 75
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.25 Score=57.22 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=83.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
++......++.+.|...+........-+.. .+..++.-+...+...++...+.+......+ ......++......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHC
Confidence 334444455778888888777654333322 2222333333344356777778776654443 33344444455677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
|+++.|..+|++.-..........|.+|+.+...|+.++|..+|+++.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999876554445688999999999999999999999999975
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.003 Score=58.56 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------C
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------P 113 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 113 (944)
-.++.....++..|.|+.|+.+...++....++ .+.+..+|..++..++|..|...|+++++.. +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 358889999999999999999999877653222 3588999999999999999999999997641 1
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 114 -------------------QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (944)
Q Consensus 114 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (944)
.+.+..+.++.||.+.+++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 01267899999999999999999998764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0095 Score=53.56 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 388 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~-~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
....++.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|.++.+.+|+..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688899999999887754 4788999999988884 5678999999999999999999999999999999987764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0074 Score=53.54 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 390 FSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~-~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.+.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.||..+.++|+|++|.++.+.+|++.|++.+|..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 467888888888877654 4688888888888774 4678888888888888888888888888888888887754
|
| >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.017 Score=65.50 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=86.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC------------C---HHHHHHHHHHHHHcCCCCCc-
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC------------C---DSVRHRFLSTLEQLGLESLR- 743 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~------------~---~~~~~~~~~~~~~~gi~~~r- 743 (944)
++.++|-||.+....+++.+....+-|...+--.||..+.+.. . +.+.+++.++. .+|
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~------~~~g 340 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT------KKRG 340 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHT------TTTE
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHh------CCCe
Confidence 3567899999888888888888888888877667777654321 0 01222332221 233
Q ss_pred EEEccCccCcHHHHHhccccc--EEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH-hhcCCccccc-----
Q 002273 744 VDLLPLILLNHDHMQAYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA----- 815 (944)
Q Consensus 744 v~~~~~~~~~~~~~~~~~~~D--i~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~gl~~~v~----- 815 (944)
+++.++.| +. ..+..+| +|+ ..+|.+|++||+++|||+|++|--.- ...-+..+ ..+|+.-.+.
T Consensus 341 ~~v~~w~P-q~---~vL~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~~D-Q~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAP-QA---QVLAHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAE-QKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCC-HH---HHHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccC-HH---HHhCCCCcCeEE---ecccchhHHHHHHcCCCEEecccccc-chHHHHHHHHHhCeEEEeecccCC
Confidence 34445765 33 4455555 566 25888999999999999999985221 22334444 5777765553
Q ss_pred -CCHHHHHHHHHHHhc
Q 002273 816 -KNEDEYVQLALQLAS 830 (944)
Q Consensus 816 -~~~~~y~~~a~~l~~ 830 (944)
-+.++..+...++..
T Consensus 413 ~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 413 LVRREEVARVVKGLME 428 (480)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 256777766667776
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.018 Score=51.07 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 81 NVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
.+.+.+.+|.++.+..+. .+++.+++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 566677777777666543 3577777777776663 35667777777777777777777777777777777665443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.056 Score=48.59 Aligned_cols=77 Identities=8% Similarity=-0.051 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 355 HCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 355 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
...++.+++|+++....+ ..+++.+++..+...|. .-+.++.+|..++++|+|++|.++.+.+++..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 345666666666666553 34566677777766663 34567777777777777777777777777777777655443
Q ss_pred H
Q 002273 431 L 431 (944)
Q Consensus 431 l 431 (944)
.
T Consensus 117 k 117 (144)
T 1y8m_A 117 K 117 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.37 Score=58.48 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
......+...|..++|++..+ +.... .......|++++|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 334455566788888776553 22222 2345678999999887543 3567889999999999999
Q ss_pred HHHHHHHHHHH
Q 002273 241 LESAIACYERC 251 (944)
Q Consensus 241 ~~~A~~~~~~a 251 (944)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.25 Score=59.95 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=29.1
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
..|++++|.+..+ ..++...|..+|..+.+.++++.|+++|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4466666666543 2345667777777777777777777777765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.51 E-value=1.3 Score=47.89 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
..+|.+|+..|+|.+|.+.+.++.+.-.. -.+++..-..+|...+++.++...+.++...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 47899999999999999999998774211 2456777788999999999999999988765
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.50 E-value=1.5 Score=40.25 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c--C------------
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--L--D------------ 112 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~------------ 112 (944)
+-.+..+..++-.|+|..|+-.+.+ -+...+.+..+.||.+.++|.+|+..+++.++ . +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 3455677888899999999887654 25678889999999999999999999999993 2 2
Q ss_pred -CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 113 -PQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 113 -p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
|.+.+ .+..+|.++.+.|+.++|+.+|.......|-...
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 33333 4667899999999999999999999988876443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.40 E-value=5.3 Score=47.96 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cH----
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---N---FE---- 259 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~---- 259 (944)
..+|.+ ..|+.++++..+.+.+... .++ .-+++.+|.++...+ ++++..+...+.... . ..
T Consensus 380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence 344444 4566677888777766422 122 235666666666555 468888887776543 0 11
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc-----hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 260 IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS-----PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334 (944)
Q Consensus 260 ~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 334 (944)
.+...+|.++...++......+............ .++-++.-.++-+....++..+.+...+...-...+|..+.
T Consensus 456 gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 456 GASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 1222333333222221111111111111111000 11122233444443344444333322222222223333344
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHCAEA----CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (944)
..|+.+.+....+..... .++.. ...+|..|...|+...-.+.+..+.+-..++..-..-+|..+...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 556655555554444332 12222 233455566677744333355555543222222222222223334444333
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-HHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHH
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDA--GS-ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~--g~-~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~ 479 (944)
...++...+ ..++.+.+..+.++-.. |+ ..++++.+.+... ++ +..+..+-+.++..+..+..+.
T Consensus 614 ~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 614 PRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP-VDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhcCCccc
Confidence 333322221 23355544444333332 22 2567777777753 44 4556667777888777776554
|
| >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.092 Score=56.63 Aligned_cols=107 Identities=10% Similarity=-0.005 Sum_probs=62.6
Q ss_pred CeEEEecCC--CCcCCH--HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCC---CCcE-EEccCccCc
Q 002273 682 FITFGSFNN--LAKITP--KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE---SLRV-DLLPLILLN 753 (944)
Q Consensus 682 ~~~f~~~~~--~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~---~~rv-~~~~~~~~~ 753 (944)
.|++.-..+ ..|.-| .+.++...+.. - +.++++.+.+. .++... .+.+ .+. ..++ .+.|... -
T Consensus 182 ~i~l~pga~~~~~k~wp~~~~~~l~~~L~~-~-~~~vvl~g~~~----e~~~~~-~i~~-~~~~~~~~~~~~l~g~~s-l 252 (348)
T 1psw_A 182 MIGFCPGAEFGPAKRWPHYHYAELAKQLID-E-GYQVVLFGSAK----DHEAGN-EILA-ALNTEQQAWCRNLAGETQ-L 252 (348)
T ss_dssp EEEEECCCTTCGGGSCCHHHHHHHHHHHHH-T-TCEEEECCCGG----GHHHHH-HHHT-TSCHHHHTTEEECTTTSC-H
T ss_pred EEEEECCCCccccCCCCHHHHHHHHHHHHH-C-CCeEEEEeChh----hHHHHH-HHHH-hhhhccccceEeccCcCC-H
Confidence 455544431 456655 44444433333 2 67777776542 222222 2221 121 1244 5666644 6
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
.+..+.+..||+++-.- .|+..+ |.++|+|+|++-|.+...|.+
T Consensus 253 ~e~~ali~~a~l~I~~D---sg~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 253 DQAVILIAACKAIVTND---SGLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp HHHHHHHHTSSEEEEES---SHHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred HHHHHHHHhCCEEEecC---CHHHHH-HHHcCCCEEEEECCCCccccC
Confidence 89999999999998421 444455 888999999999988766654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.51 Score=51.10 Aligned_cols=95 Identities=14% Similarity=-0.016 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCCH----H
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC----AEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNFS----Q 392 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~----~ 392 (944)
-..+|..|+..|+|.+|.+.+.+..+.-. ++ .+++.....+|...+++.++...|.++.... +.++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 34789999999999999998888876421 11 5667777888999999999999999887653 1223 3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 002273 393 SLNNLGVVYT-VQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 393 ~~~~la~~~~-~~g~~~~A~~~l~~al~~ 420 (944)
....-|..+. ..++|.+|..+|-++++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 4556678888 799999999999888754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.096 Score=61.69 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
.+...+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+++.|+-.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4555577777788888888888888888888888888888888888888888765443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=1.3 Score=49.11 Aligned_cols=204 Identities=14% Similarity=-0.039 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEK------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
.+..+..+..+. .|++++|++.+..+.+. .+....+...+...+...++++...+.+.-..+.......+-..
T Consensus 17 ~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~ 95 (445)
T 4b4t_P 17 LKEEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 95 (445)
T ss_dssp -----------C-HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344455555543 47899999887655443 12356778888899999999998888776555544433333222
Q ss_pred HHHH---HH-HcCCHHHHHHHHHHHHHcC----CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C--
Q 002273 122 CGIL---YK-DEGRLVEAAESYHKALSAD----PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H-- 189 (944)
Q Consensus 122 la~~---~~-~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~-- 189 (944)
+... +. .....+. +.....+..- .+-...-...+.+...++.++...|++.+|...+.......- .
T Consensus 96 ~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp HHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 2221 11 1122221 1112222221 111111123566778899999999999999999998764311 1
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 190 --YAPAYYNLGVVYSELMQYDTALGCYEKAAL---ERPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 190 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
-.+.+.....+|...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256777889999999999999999998743 233333 45677899999999999999999988764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.15 Score=60.10 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=85.2
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hc-CChHHHHHHHHHHHhh--------CCCC----------HHH
Q 002273 302 EGD-INQGVAYYKKALYYNWHYADAMYNLGVAYG--EM-LKFDMAIVFYELAFHF--------NPHC----------AEA 359 (944)
Q Consensus 302 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----------~~~ 359 (944)
.++ ++.|+.++++..+.+|..... +..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 588999999999998875432 22222222 22 2344677777777642 2222 235
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 417 (944)
+...+..+...|+++-|+++.++|+...|..-..|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6667888889999999999999999999999999999999999999999999766544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=7.2 Score=45.00 Aligned_cols=79 Identities=6% Similarity=-0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.++...+.+......+ ......++......|+++.|...++++-..........+-+|..+...|+.++|..+|+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 269 DEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555555554433322 222333333344557777777777655443334566667777777777777777777777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.4 Score=41.58 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+++..|.+| .+.|+++.|.++.++. ++...|..+|......|+++-|..+|.++-. +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 566666666 6679999999988775 6788899999999999999999999887532 23344456
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
...|+.++-...-+.+.... + +.....++...|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g-~-----------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE-D-----------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT-C-----------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc-c-----------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66677655444444333222 1 11122334455677776666543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.75 Score=46.30 Aligned_cols=121 Identities=10% Similarity=-0.029 Sum_probs=73.1
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
+.+.|+.++|++.++..++.+|.+......+..++.-.|+++.|.+.++.+.+++|+.......+-.+. .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 455677777777777777777777777777777777778888888888777777777543221111110 0011
Q ss_pred HHHHHHHh--CC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 413 MIEKAIAA--NP---TY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 413 ~l~~al~~--~p---~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.=++.+.- .| .. -.....-+......|+.++|.+.-.++++..|..+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111110 11 11 122233344556678999999999999888887654
|
| >3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.089 Score=56.74 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=59.7
Q ss_pred CcCC-HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC
Q 002273 692 AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 770 (944)
Q Consensus 692 ~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~ 770 (944)
.|.= .+.+.-.++.|..- +..+++.+++. .++...+..+..+ ..-+.+.|... -.+..+.+..||+++-.
T Consensus 198 ~k~wp~~~~~~l~~~l~~~-g~~vvl~g~~~----e~~~~~~i~~~~~--~~~~~l~g~~s-l~e~~ali~~a~~~i~~- 268 (349)
T 3tov_A 198 EKRWPAERFAHVADYFGRL-GYKTVFFGGPM----DLEMVQPVVEQME--TKPIVATGKFQ-LGPLAAAMNRCNLLITN- 268 (349)
T ss_dssp GGCCCHHHHHHHHHHHHHH-TCEEEECCCTT----THHHHHHHHHTCS--SCCEECTTCCC-HHHHHHHHHTCSEEEEE-
T ss_pred cCCCCHHHHHHHHHHHHhC-CCeEEEEeCcc----hHHHHHHHHHhcc--cccEEeeCCCC-HHHHHHHHHhCCEEEEC-
Confidence 4544 34444444444333 56777766542 2222222233332 23356667654 57899999999999832
Q ss_pred CCCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 771 PYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 771 ~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
-.|+.-+ |.++|+|+|++-|.+...+.|
T Consensus 269 --DsG~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 269 --DSGPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp --SSHHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred --CCCHHHH-HHhcCCCEEEEECCCCccccC
Confidence 2455666 889999999999988766654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.62 Score=46.87 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=57.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (944)
...+++.|+.++|++..+..++.+|.|+.....+...++-.|+++.|.+.++.+.+++|...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 35678899999999999999999999999999999999999999999999999999998763
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.68 E-value=4.2 Score=37.33 Aligned_cols=190 Identities=18% Similarity=0.154 Sum_probs=124.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
....++-.+|+.++-+-.-. .|..++....++..++-.|+|..++-.+. +-+...+.+..+.||....++.+
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHH
Confidence 34456678888877554333 34455677888999999999999887654 23456778888999999999999
Q ss_pred HHHHHHHHHH--cC---------------CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 135 AAESYHKALS--AD---------------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (944)
Q Consensus 135 A~~~~~~al~--~~---------------p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (944)
|+..+++.++ .+ |.+.+ ..+..+|..+.+.|+.++|+.+|......+|-.+.+-..+
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE------fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEE------FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHH------HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 9999999993 22 22222 2467789999999999999999999988876543332111
Q ss_pred HH-----------HHH------HcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 198 GV-----------VYS------ELMQYDTAL--------GCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERC 251 (944)
Q Consensus 198 a~-----------~~~------~~g~~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 251 (944)
-. +.. +...+.... ...++..+.-|.... .....+.-|+.+|-.++...+|...
T Consensus 155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~l 234 (242)
T 3kae_A 155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELV 234 (242)
T ss_dssp HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 00 000 000011111 122222333455333 2345677888999999999999998
Q ss_pred HHhCCCc
Q 002273 252 LAVSPNF 258 (944)
Q Consensus 252 l~~~p~~ 258 (944)
-+.+|..
T Consensus 235 R~kDP~F 241 (242)
T 3kae_A 235 RRKDPMF 241 (242)
T ss_dssp HHHSTTT
T ss_pred HhcCCCc
Confidence 8888853
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.67 E-value=4.8 Score=44.58 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCH---
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHC----AEACNNLGVIYKDRDNLDKAVECYQMALS---IKPNFS--- 391 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~--- 391 (944)
.....|+.+|...|++.+|...+.....-. ..+ .+.+.....++...+++.+|...++++.. ..+..+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 445678888888888888888888765431 111 45677778888888888888888887642 133333
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 392 -QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 392 -~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
..+...|.++...++|.+|..+|..+++.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35566788888888888888888777653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=1.7 Score=40.89 Aligned_cols=108 Identities=8% Similarity=-0.047 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (944)
+++..+.++ .+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++-. +
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~ 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------F 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------H
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------H
Confidence 445555554 5678888888887654 5677888899999999999988888887622 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (944)
..+...|...|+.++-.+.-+.+..... +.....++..+|+++++++.|.+
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2223334455666554444443333221 12223445667777777776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.83 Score=49.83 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=75.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
.|......|+.+.|...+.+++.+.....-. ... ...+-.+ ...+++.. ..+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCH
Confidence 3344445678888888888888774322100 000 0111111 11111111 23455677888899999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
.+|+..+++++..+|-+..++..+..+|...|+..+|++.|+++.+
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.86 Score=49.69 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (944)
+.+...|......|+.++|...+++++...... ..+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555666677899999999999999874321 1223346667788999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (944)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (944)
+++..+|-+-.++..+..++...|+..+|+..|+++.+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988644
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.24 E-value=18 Score=43.39 Aligned_cols=167 Identities=11% Similarity=0.122 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCH
Q 002273 306 NQGVAYYKKALYYNW---H---YA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNL 373 (944)
Q Consensus 306 ~~A~~~~~~al~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 373 (944)
.+++.++...+.... . .. .+-..+|.++...++ +++.+.+...+..+... ..+-+.+|.++...|+-
T Consensus 428 ~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH
Confidence 456666666665432 0 11 244466666665554 45666666666543321 13455677777778886
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHH
Q 002273 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE----AYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
+....++..+.+...+...-...+|..+...|+.+.+....+..... . ++. +-+.+|..|...|+...-.+.+.
T Consensus 507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 507 EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 66666666555533322222233444444567776666665554432 2 232 23456677778888643333555
Q ss_pred HHHhhCCCChhhhhhHHHHhhhccCCCh
Q 002273 450 QCLKIDPDSRNAGQNRLLAMNYINEGHD 477 (944)
Q Consensus 450 ~al~l~P~~~~a~~~~~~~~~~~~~~~~ 477 (944)
.+.+ +++ ...+..-.+++..+..++.
T Consensus 585 ~~~~-d~~-d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 585 VAVS-DSN-DDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHH-CSC-HHHHHHHHHHHHHHTSSSC
T ss_pred Hhcc-CCc-HHHHHHHHHHHHhhccCCH
Confidence 5543 333 2344444555555544443
|
| >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.32 Score=51.77 Aligned_cols=90 Identities=13% Similarity=0.236 Sum_probs=54.2
Q ss_pred HHHHHHHhHc--CCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCccc
Q 002273 700 QVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTT 777 (944)
Q Consensus 700 ~~~~~il~~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t 777 (944)
+-|+++.+.. .+.++++..++ +..++... .+.+ +. ..+.+.|... -.+..+.+..||+++-. -.|+.
T Consensus 197 ~~~~~l~~~L~~~~~~vvl~~g~---~~e~~~~~-~i~~-~~--~~~~l~g~~s-l~el~ali~~a~l~I~~---DSG~~ 265 (326)
T 2gt1_A 197 EHWRELIGLLADSGIRIKLPWGA---PHEEERAK-RLAE-GF--AYVEVLPKMS-LEGVARVLAGAKFVVSV---DTGLS 265 (326)
T ss_dssp HHHHHHHHHTTTTCCEEEECCSS---HHHHHHHH-HHHT-TC--TTEEECCCCC-HHHHHHHHHTCSEEEEE---SSHHH
T ss_pred HHHHHHHHHHHHCCCcEEEecCC---HHHHHHHH-HHHh-hC--CcccccCCCC-HHHHHHHHHhCCEEEec---CCcHH
Confidence 4455554443 36677765222 12332222 2222 22 2356667654 68999999999999821 14556
Q ss_pred HHHhhhcCCcEEecCCCcccccch
Q 002273 778 TCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 778 ~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
-+ |.++|+|+|++-|.+...|.+
T Consensus 266 Hl-Aaa~g~P~v~lfg~t~p~~~~ 288 (326)
T 2gt1_A 266 HL-TAALDRPNITVYGPTDPGLIG 288 (326)
T ss_dssp HH-HHHTTCCEEEEESSSCHHHHC
T ss_pred HH-HHHcCCCEEEEECCCChhhcC
Confidence 66 666999999998887665543
|
| >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.2 Score=51.90 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 805 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l 805 (944)
..+++++..+.. .++.+.+.+. +....|..+|+++- .||+|+.|++++|+|+|..+=... .+.-+..|
T Consensus 196 ~~~~l~~~~~~~----~~v~v~~~~~---~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip~~~~-Q~~nA~~l 263 (282)
T 3hbm_A 196 NLKKLQKFAKLH----NNIRLFIDHE---NIAKLMNESNKLII----SASSLVNEALLLKANFKAICYVKN-QESTATWL 263 (282)
T ss_dssp THHHHHHHHHTC----SSEEEEESCS---CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEECCSGG-GHHHHHHH
T ss_pred HHHHHHHHHhhC----CCEEEEeCHH---HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEeCCCC-HHHHHHHH
Confidence 355665555442 3688877754 45566788999996 366899999999999888764332 23455666
Q ss_pred hhcCCcccc
Q 002273 806 TKVGLKHLI 814 (944)
Q Consensus 806 ~~~gl~~~v 814 (944)
...|...++
T Consensus 264 ~~~G~~~~~ 272 (282)
T 3hbm_A 264 AKKGYEVEY 272 (282)
T ss_dssp HHTTCEEEC
T ss_pred HHCCCEEEc
Confidence 666665544
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.27 Score=54.60 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=61.1
Q ss_pred HHHHcCChHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHhh----
Q 002273 332 AYGEMLKFDMAIVFYELAFH-----------FNPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALSI---- 386 (944)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~---- 386 (944)
.+...+++++|.++-...+. ++.-.+.+|+.++.++...|+..+.. ..+-.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34556677777766655441 13334667777777777777665432 222223322
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 387 -KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 387 -~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++. ....+..+-+.|...+.+++|..+..++. .|.. ...++.+|+++.-.++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 222 24577788889999999999999999884 4432 455778899999999999999999999999887
Q ss_pred Chhhh
Q 002273 458 SRNAG 462 (944)
Q Consensus 458 ~~~a~ 462 (944)
+..+.
T Consensus 303 ~~~a~ 307 (523)
T 4b4t_S 303 NSKSL 307 (523)
T ss_dssp SSSCS
T ss_pred chhhh
Confidence 65443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.77 E-value=2.3 Score=47.35 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=63.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHh---
Q 002273 55 ANILRSRNKFVDALALYEIVLE-----------KDSGNVEAHIGKGICLQMQNMGRLAF----------DSFSEAVK--- 110 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~--- 110 (944)
-..++.+++|++|.++...++. .++-.+..|+..+.++...|+..... ..+..+++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 4456778999999988876651 12335677888888888777765532 22222332
Q ss_pred --cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 111 --LDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (944)
Q Consensus 111 --~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (944)
.++. ....+..+-..|...+.+++|..+..++. .|.........+..++.+|.++..+++|.+|.+++..|+...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1222 24567778899999999999999999984 565433334567788899999999999999999999999987
Q ss_pred CCC
Q 002273 188 PHY 190 (944)
Q Consensus 188 p~~ 190 (944)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.76 E-value=17 Score=45.70 Aligned_cols=142 Identities=11% Similarity=-0.029 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHH
Q 002273 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (944)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (944)
...+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..........
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------
Confidence 3345556777888876654 3445677887889999999999999999999988743221111000
Q ss_pred HHHHHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YA----EAYCNMGVIYK 236 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~ 236 (944)
....+ ....... ....+..|..+..++.+.+.++.+++..+.+++..+. +. ..|.++-..+.
T Consensus 880 ------~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 880 ------AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 949 (1139)
T ss_dssp ------SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred ------hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Confidence 00000 0111111 2223445666677777888888888888888876543 22 25666777778
Q ss_pred HcCCHHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERC 251 (944)
Q Consensus 237 ~~g~~~~A~~~~~~a 251 (944)
..|+|++|...+...
T Consensus 950 ~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHCCSGGGGHHHHHH
T ss_pred hhCCHHHHHHHHHhC
Confidence 888888887776544
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.78 Score=51.45 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
..+|.+......++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++......+.+..++..++
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444444454444444444333444444444443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.17 E-value=0.7 Score=51.81 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
.+..+|.+......++.|..+|.+|..+.|++...+..||.+....|+.-+|+-+|-+++......+.+..|+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 6678999999999999999999999999999999999999999999999999999999999988888888886543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.13 E-value=2.3 Score=51.34 Aligned_cols=99 Identities=4% Similarity=-0.135 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-PQNACAHTHCG 123 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 123 (944)
..+..+-..+.+.|+.++|..+|+++-+. -.-+...|..+...|.+.|+.++|.++|+++.+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34777888999999999999999876532 34478899999999999999999999999998753 23567788888
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHcCC
Q 002273 124 ILYKDEGRL-VEAAESYHKALSADP 147 (944)
Q Consensus 124 ~~~~~~g~~-~~A~~~~~~al~~~p 147 (944)
.++.+.|+. ++|.+.+++..+..-
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 899999984 788999999987643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.72 E-value=3.6 Score=49.70 Aligned_cols=97 Identities=7% Similarity=-0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLG 398 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 398 (944)
..+..+...|.+.|+.++|..++.+..+. -.-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35666777777777777777777654432 23346677777777777777777777777776542 22456666666
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHh
Q 002273 399 VVYTVQGKM-DAAAEMIEKAIAA 420 (944)
Q Consensus 399 ~~~~~~g~~-~~A~~~l~~al~~ 420 (944)
.++.+.|+. ++|.++|++..+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 677777763 5677777777665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.28 E-value=5.8 Score=49.91 Aligned_cols=147 Identities=10% Similarity=-0.012 Sum_probs=99.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---C------------------
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---D------------------ 112 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------------------ 112 (944)
+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|+++-.. +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455666677765544 34556778888899999999999999999999987421 0
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 113 --PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 113 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
...+..|..+..++.+.+.++.+++..+.|++..+.+... .....+..+-..+...|+|++|...+...-.. ...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~--~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r 970 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED--LSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLK 970 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSC
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHH
Confidence 1123456777788888999999999999998876544332 12334666667778889999988877554322 223
Q ss_pred HHHHHHHHHHHHHcCCH
Q 002273 191 APAYYNLGVVYSELMQY 207 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~ 207 (944)
...+..+-..+++.|+.
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 44555555555555543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.06 E-value=1.3 Score=48.96 Aligned_cols=103 Identities=12% Similarity=-0.091 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (944)
.++..+|..|...|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++........+ +.....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHHH
Confidence 3556666666666666666666666655322 22345555566666666666666666666443222111 1122233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
....|..+...++|.+|-..|.+++..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333444455555555555555554443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.37 E-value=2.9 Score=46.21 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCH----HH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNA----CA 118 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~ 118 (944)
......+|..+++.|++++|.+.|.++..... ...+.++....++...+++..+...+.++.... ..++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 44678899999999999999999999987543 246888899999999999999999999986542 2222 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPS 148 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 148 (944)
....|.++...++|.+|...|-.++.....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 455677788899999999999988776544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=87.36 E-value=0.00017 Score=78.05 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHH
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~ 309 (944)
.|+.++..+|+|..|++.-+++ ++...|.....+..+.+....+..--............+...|...|.+++-+
T Consensus 175 kLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 249 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHH
Confidence 3444555555555555443332 33334444444444444443333333333444555566777789999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-C-CC------CHHHHHHHHHHHHHCCCHHHHHH
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-N-PH------CAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~------~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
.+++..+.....+......||.+|.+- +.++-.++++..... + |. ....|..+..+|..-.+++.|..
T Consensus 250 sLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 250 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 999999998888999999999988765 455555554432221 1 22 24467778888888888887754
|
| >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... | Back alignment and structure |
|---|
Probab=87.05 E-value=3.8 Score=48.17 Aligned_cols=112 Identities=16% Similarity=0.052 Sum_probs=69.9
Q ss_pred CCeEEEecCCC--CcCCHHH-HHH---HHHHHhHcC-----CceEEEecCCCCCHHHHHHHHHHHHHc--------CCCC
Q 002273 681 GFITFGSFNNL--AKITPKV-LQV---WARILCAVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLES 741 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~-~~~---~~~il~~~p-----~~~l~~~~~~~~~~~~~~~~~~~~~~~--------gi~~ 741 (944)
+.++.|-.-|+ +|...-. +.. +.+|+. .| ..++++.|++.........+.+.+... .| +
T Consensus 549 d~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~-~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v-~ 626 (824)
T 2gj4_A 549 NSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK-EPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVV-G 626 (824)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHH-CTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTT-G
T ss_pred CcceEeeeecchhhcchhhHHHHHHHHHHHHHh-CCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCccc-C
Confidence 34555555555 7776554 444 444444 44 457888877664444444444444432 23 4
Q ss_pred C--cEEEccCccCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCc-EEecCCCc
Q 002273 742 L--RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVP-CVTMAGSV 795 (944)
Q Consensus 742 ~--rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~~~~t~~eal~~gvP-vvt~~g~~ 795 (944)
+ +|+|++.-. ..---..+..|||+|-++- + ..||+-+=+|.-|++ ++|+.|-.
T Consensus 627 ~~lKVvFl~nYd-vslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGan 685 (824)
T 2gj4_A 627 DRLRVIFLENYR-VSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGAN 685 (824)
T ss_dssp GGEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTH
T ss_pred CceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCcc
Confidence 6 899987522 1222235688999999885 7 889999999999965 66777643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.77 E-value=33 Score=35.82 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
.+|+.+-.+.-...-.+++.+..+|..|.+.+++.+|..+|
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444321223357889999999999999999988877
|
| >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A | Back alignment and structure |
|---|
Probab=84.96 E-value=0.65 Score=45.97 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=44.3
Q ss_pred cEEEccCccCcHHHHHhcc-cccEEecCCCCCCcccHHHhhhcCCcEEecCCCccc---ccchhHHHhhcCCccc
Q 002273 743 RVDLLPLILLNHDHMQAYS-LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTKVGLKHL 813 (944)
Q Consensus 743 rv~~~~~~~~~~~~~~~~~-~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~---~r~~~~~l~~~gl~~~ 813 (944)
++...++.+ +....+. .||+++- -+|.+|++|++++|+|.|..|-.... ...-|..|...|..-.
T Consensus 115 ~v~v~~f~~---~m~~~l~~~AdlvIs---haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~ 183 (224)
T 2jzc_A 115 KVIGFDFST---KMQSIIRDYSDLVIS---HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWS 183 (224)
T ss_dssp EEEECCSSS---SHHHHHHHHCSCEEE---SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCE
T ss_pred eEEEeeccc---hHHHHHHhcCCEEEE---CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEE
Confidence 555556654 4445667 8999982 37888999999999999998874322 2223556666677533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 944 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-51 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-39 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-37 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-34 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-37 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-34 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-29 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-28 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-22 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-28 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-28 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 9e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-25 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-24 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-16 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-25 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-15 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-11 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-24 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-19 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-15 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-07 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-20 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-13 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-12 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 9e-18 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 9e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-11 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-10 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-17 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-14 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-10 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-16 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-08 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-15 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-13 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-11 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-08 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-08 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-10 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-08 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 4e-10 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 7e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 4e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.002 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-10 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-09 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 6e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 6e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.001 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-04 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 7e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 7e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 5e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 3e-08 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 6e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 9e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.002 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 7e-08 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 0.004 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 9e-07 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 0.001 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 0.002 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 1e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 4e-05 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 6e-04 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.004 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 8e-04 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 182 bits (461), Expect = 6e-51
Identities = 98/415 (23%), Positives = 166/415 (40%), Gaps = 57/415 (13%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+ A+ F A + ++ N + + + A+K
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
+P A A+++ G +YK+ G+L EA E Y AL P + LA L G
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 172 NTQDG---------------------------IQKYYEALKIDPHYAPAYYNLGVVYSEL 204
Y +A++ P++A A+ NLG V++
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
+ A+ +EKA P + +AY N+G + K + A+A Y R L++SPN + N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 265 MAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD 324
+A + G I+ + Y++A+ H+ D
Sbjct: 243 LACVYYEQG------------------------------LIDLAIDTYRRAIELQPHFPD 272
Query: 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 384
A NL A E A Y A P A++ NNL I +++ N+++AV Y+ AL
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439
+ P F+ + +NL V QGK+ A ++AI +PT+A+AY+N+G ++
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 147 bits (372), Expect = 4e-39
Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 6/330 (1%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
+L AG+ + + + + +P L ++ + + D + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT--- 276
+ P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A AL G
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 277 -YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
+ L + + +S L+K G + + A Y KA+ ++A A NLG +
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 336 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395
+ +AI +E A +P+ +A NLG + K+ D+AV Y ALS+ PN +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
NL VY QG +D A + +AI P + +AY NL ++ GS++ A D Y L++
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 456 PDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485
P + LA +G+ ++ +R
Sbjct: 302 PTHAD--SLNNLANIKREQGNIEEAVRLYR 329
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 142 bits (358), Expect = 3e-37
Identities = 73/352 (20%), Positives = 141/352 (40%), Gaps = 31/352 (8%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L ++I + + + ++++ EA+ G + + + A + + A++L
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC---------------- 155
P + + G + A ++Y AL +P
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 156 -----------LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
A+ ++LG G I + +A+ +DP++ AY NLG V E
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264
+D A+ Y +A P +A + N+ +Y +G ++ AI Y R + + P+F A N
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 265 MAIALTDLG----TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320
+A AL + G + L ++ + + + +G+I + V Y+KAL
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 372
+A A NL + K A++ Y+ A +P A+A +N+G K+ +
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (338), Expect = 1e-34
Identities = 60/313 (19%), Positives = 115/313 (36%), Gaps = 6/313 (1%)
Query: 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
L + ++ A + + P + I+ L+ + + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 256 PNFEIAKNNMAIAL----TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAY 311
P A +N+ + R L + + + + GD+ V
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 312 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371
Y AL YN +LG + + + A Y A P+ A A +NLG ++ +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
+ A+ ++ A+++ PNF + NLG V D A +A++ +P +A + NL
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 491
+Y + G I LAID Y + +++ P +A N LA +G + + + +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--LANALKEKGSVAEAEDCYNTALRLC 301
Query: 492 MRLYSQYTSWDNT 504
+ N
Sbjct: 302 PTHADSLNNLANI 314
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 1e-11
Identities = 19/196 (9%), Positives = 42/196 (21%)
Query: 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455
L G +AA + P L ++ + + +K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 456 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGY 515
P A N + + H K + + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 516 VSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 575
+ Y + + L ++ A +T G + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 576 IDEKKVAAMVREDKID 591
+ + +D
Sbjct: 184 EIWLAIHHFEKAVTLD 199
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 144 bits (364), Expect = 4e-37
Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 18/236 (7%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
+ +A + + ++ ++ +R L+ Y++ L + + K
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKV----E 57
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELV--KLEGDINQGVAYYKKALYY-------NW 320
DL + + + N +P V L + +Y + L +
Sbjct: 58 QDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL 117
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
LG+ + + + + C +LG I + R+ +A Y
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESYY 175
Query: 381 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436
+ A + P+ Q N L ++ + +G ++IA + A NL
Sbjct: 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (341), Expect = 3e-34
Identities = 37/308 (12%), Positives = 89/308 (28%), Gaps = 23/308 (7%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
Q +A + + V++ Y+K + YA ++
Sbjct: 6 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN 62
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAI-ALTDLGTKTYGRALLLFRLNGSNFQSPF 295
+ ++ I + N ++ + + + Y + L N P
Sbjct: 63 HA--FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC-TVFNVDLPC 119
Query: 296 FE-------LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348
+ + + V + Y + +LG + A +Y
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRH 177
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408
A P + N L ++ + + + Y ++++K F + NL + +
Sbjct: 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR 237
Query: 409 AAAEMIEKAIAANPTYAEAYNNL-GVLYR--DAGSISLAIDAYEQCLKIDPDSRNAGQNR 465
+ + +A+ G +Y +S + E+ K + +
Sbjct: 238 DEVKTKW----GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQ 293
Query: 466 LLAMNYIN 473
L+ + IN
Sbjct: 294 LVHVTVIN 301
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (304), Expect = 1e-29
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + SR D Y+ +L D Q++ AF + ++ +
Sbjct: 27 AEVWTSRQALQDL---YQKMLVTDLEYALDK------KVEQDLWNHAFKNQITTLQGQAK 77
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
N + L A+ Y + L + + + LG +T
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
++ + + +LG + Q A Y AA P + Y + ++
Sbjct: 138 AIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
++GD + I Y R +AV F A N+ AL
Sbjct: 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (295), Expect = 2e-28
Identities = 30/315 (9%), Positives = 62/315 (19%), Gaps = 44/315 (13%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
+ +A L + ++ L + Y K L D Y + +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
N +Q + + + Y L
Sbjct: 62 ------NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV 115
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280
+G+I + + + + S + ++
Sbjct: 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSS--SCSYICQHCLVHLGDIARYR-------- 165
Query: 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 340
+Q +YY+ A L +
Sbjct: 166 ----------------------NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL 203
Query: 341 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400
I +Y + A NL V+ F + G V
Sbjct: 204 TTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAF---IKFHGHV 260
Query: 401 YTVQGKMDAAAEMIE 415
Y + + +
Sbjct: 261 YLSKSLEKLSPLREK 275
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.9 bits (243), Expect = 8e-22
Identities = 20/215 (9%), Positives = 47/215 (21%), Gaps = 42/215 (19%)
Query: 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN--- 362
Q Y ++A D+ + Y+ + A
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59
Query: 363 --------------------------------LGVIYKDRDNLDKAVECYQMALSIKPNF 390
+ + ++ ++
Sbjct: 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119
Query: 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
+ LG++ Q A + + + +LG + R S A Y
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRH 177
Query: 451 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485
++ P + LA+ ++G +
Sbjct: 178 AAQLVPSNGQPYNQ--LAILASSKGDHLTTIFYYC 210
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 115 bits (288), Expect = 1e-28
Identities = 34/305 (11%), Positives = 78/305 (25%), Gaps = 21/305 (6%)
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
K E + Y A + ++ L + P +A + + ++
Sbjct: 16 AKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH 75
Query: 238 ----------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF--- 284
+++ + E CL V+P ++ L+ L + R L L
Sbjct: 76 LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135
Query: 285 ----RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 340
N + F + + +A+ + N+ + + ++
Sbjct: 136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195
Query: 341 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400
+ L + E N D D++ Y L +
Sbjct: 196 DSGPQGRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK 251
Query: 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460
TV + + +++ N L + + +DP
Sbjct: 252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311
Query: 461 AGQNR 465
+
Sbjct: 312 YLDDL 316
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 113 bits (284), Expect = 5e-28
Identities = 30/299 (10%), Positives = 82/299 (27%), Gaps = 10/299 (3%)
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQKYY 181
+ E + L A+P + C VL L + + A + +
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYD--TALGCYEKAA-LERPMYAEAYCNMGVIYKNR 238
L+++P +++ + S L + + L + + + V +
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298
+A + + + + + + + L L + N + +
Sbjct: 158 VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217
Query: 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358
+Q +Y + L + + + N C
Sbjct: 218 AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 277
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417
L + ++ + ++ P + L++L + ++ + +E A
Sbjct: 278 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV----LKMEYA 332
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 9e-07
Identities = 7/101 (6%), Positives = 17/101 (16%)
Query: 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109
L + + Y L + + + + E
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269
Query: 110 KLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150
+ E + + + DP
Sbjct: 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 7e-06
Identities = 11/147 (7%), Positives = 37/147 (25%), Gaps = 11/147 (7%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +L + D+ + +E + + + + +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAE 240
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+E+ + + + + + L +L +
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEK 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVY 201
+ +Q + +DP A +L +
Sbjct: 294 ETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (264), Expect = 1e-25
Identities = 49/281 (17%), Positives = 91/281 (32%), Gaps = 17/281 (6%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+ G G+ + + + A++ DP + A+ LG +E Q A+ + +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
P A + V + N A L +P + G R L
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKF 339
+ + + + A+ D LGV + ++
Sbjct: 144 ---------------GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 188
Query: 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399
D A+ + A P+ N LG + + ++AV Y+ AL ++P + +S NLG+
Sbjct: 189 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 248
Query: 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440
G A E +A+ G + + S
Sbjct: 249 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 289
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 4e-24
Identities = 54/312 (17%), Positives = 99/312 (31%), Gaps = 18/312 (5%)
Query: 177 IQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
K Y+ + +P P + G+ + A+ +E A + P + EA+ +G
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPF 295
AI+ RCL + P+ + A +A++ F Q+
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVS---------------FTNESLQRQACE 108
Query: 296 FELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFN 353
L + + F + +
Sbjct: 109 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 168
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413
+ LGV++ DKAV+C+ ALS++PN N LG + + A
Sbjct: 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228
Query: 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
+A+ P Y + NLG+ + G+ A++ + + L + SR I
Sbjct: 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 288
Query: 474 EGHDDKLFEAHR 485
L +
Sbjct: 289 STLRLALSMLGQ 300
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.5 bits (194), Expect = 2e-16
Identities = 48/361 (13%), Positives = 102/361 (28%), Gaps = 65/361 (18%)
Query: 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130
Y+ E + +G+ + A F AV+ DP++ A + G +
Sbjct: 8 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67
Query: 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190
+ + A + + L P + A LA+ T+ + + + L+ P Y
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTN-------ESLQRQACEILRDWLRYTPAY 120
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A + +G + + +
Sbjct: 121 AHLVTPAEEGAGGAGLGP------------------SKRILGSLLSD-SLFLEVKELFLA 161
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310
+ + P + + L L G+ ++ V
Sbjct: 162 AVRLDPTSIDPDVQCGLGV----------------------------LFNLSGEYDKAVD 193
Query: 311 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370
+ AL + LG + + A+ Y A P + NLG+ +
Sbjct: 194 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 253
Query: 371 DNLDKAVECYQMALSIKPNFSQS-----------LNNLGVVYTVQGKMDAAAEMIEKAIA 419
+AVE + AL+++ + L + ++ G+ DA + ++
Sbjct: 254 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 313
Query: 420 A 420
Sbjct: 314 T 314
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (180), Expect = 1e-14
Identities = 41/277 (14%), Positives = 80/277 (28%), Gaps = 45/277 (16%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+A+ L+E +++D ++EA G LA +
Sbjct: 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD------ 162
++L P N A + + +E +A E L P+Y
Sbjct: 80 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 139
Query: 163 --LGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTA-------- 210
+ SL + + + A+++ LGV+++ +YD A
Sbjct: 140 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 199
Query: 211 --------------------------LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+ Y +A +P Y + N+G+ N G A
Sbjct: 200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
+ + L + + ++ T AL
Sbjct: 260 VEHFLEALNMQRKSRGPRGEGGAMSENIW-STLRLAL 295
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 4/149 (2%)
Query: 345 FYELAFHF---NPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400
Y+ + F NP G+ +L AV ++ A+ P ++ LG
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460
+ A + + + P A L V + + A + L+ P +
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 461 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 489
G ++ +
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSL 151
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 102 bits (254), Expect = 7e-25
Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 14/255 (5%)
Query: 197 LGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
L V +Q + L E+ AL A+ GV+Y + G A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 253 AVSPNFEIAKNNMAIALTDL----GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQG 308
A+ P+ N + I LT ++L + + G
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 309 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVI 366
+ + L +A ++ + V + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
++ +++ S+ + S++ LG Y G +D+A + + A+A N
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
Query: 427 AYNN----LGVLYRD 437
+ L +L +D
Sbjct: 245 EHRYALLELSLLGQD 259
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 73.7 bits (179), Expect = 7e-15
Identities = 39/219 (17%), Positives = 72/219 (32%), Gaps = 5/219 (2%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ S A + L E GI L A+++F ++LDP
Sbjct: 44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
AH + GI GR A + DP+ + L + L +
Sbjct: 104 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-----EKQAK 158
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +++++E + SE + +E +G
Sbjct: 159 EVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 218
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Y + GDL+SA A ++ +A + + + + L+ LG
Sbjct: 219 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 64.1 bits (154), Expect = 1e-11
Identities = 31/196 (15%), Positives = 58/196 (29%)
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
P ++ E + + + A +Y GV Y + +A + A
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410
P E N LG+ N D A E + L + P ++ + N G+ G+ A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 470
+ + +P L + + + K D + N
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 471 YINEGHDDKLFEAHRD 486
+ ++L D
Sbjct: 185 ISEQTLMERLKADATD 200
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Query: 329 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 384
L V L+ ++ + E + A+ GV+Y A + AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444
+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G LA
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 445 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 501
D + DP+ LA ++E ++ + H + + ++ +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 14/111 (12%), Positives = 32/111 (28%)
Query: 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113
A + + L + +K+ + Q + ++ L
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+ + + G Y G L A + A++ + + L+ LG
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 16/153 (10%), Positives = 32/153 (20%), Gaps = 9/153 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
L + A + D + + + Q + + K D +
Sbjct: 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172
Query: 116 ACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ L + S L LG +
Sbjct: 173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG-------DL 225
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206
+ A+ + H + + S L Q
Sbjct: 226 DSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 5e-24
Identities = 28/265 (10%), Positives = 68/265 (25%), Gaps = 36/265 (13%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280
+ + Y + + E A + ++ + + L L
Sbjct: 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------- 91
Query: 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 340
D+++ + Y + ++ V +
Sbjct: 92 ----------------------KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 129
Query: 341 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400
+ F + + A + + ++ D ++ L + N V
Sbjct: 130 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 189
Query: 401 YTVQGKMDAAAEMIE------KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454
+ + A + + I P A+N L + +D G +S + Q L +
Sbjct: 190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248
Query: 455 DPDSRNAGQNRLLAMNYINEGHDDK 479
P + L Y + +
Sbjct: 249 QPSHSSPYLIAFLVDIYEDMLENQC 273
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (213), Expect = 7e-19
Identities = 36/305 (11%), Positives = 86/305 (28%), Gaps = 49/305 (16%)
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DL 241
+ + Y V + + A A + V+ K+ DL
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL 301
+ + P ++ + + L
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWL----------------------------- 125
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
D +Q + + L + A + E +D + + + + N
Sbjct: 126 -RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 184
Query: 362 NLGVIYKD------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415
+ + R L++ V+ + + P+ + N L + +G + ++
Sbjct: 185 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLN 243
Query: 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475
+ + P+++ Y I+ +D YE L+ D++ N+ L + I
Sbjct: 244 QLLDLQPSHSSPY-----------LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK 292
Query: 476 HDDKL 480
D +
Sbjct: 293 EKDTI 297
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.6 bits (182), Expect = 6e-15
Identities = 27/298 (9%), Positives = 73/298 (24%), Gaps = 35/298 (11%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ + + + + + + R A + A+ + + ++L L L
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ ++ P +++ V+ L L + A
Sbjct: 95 HEE------MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 148
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287
+ + + + ++ + ++ L N +++
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND---------- 198
Query: 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347
+ + V Y + + H A L +
Sbjct: 199 --------------RAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLN 243
Query: 348 LAFHFNP--HCAEACNNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401
P L IY+D + D + AL + ++ + + Y
Sbjct: 244 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (147), Expect = 2e-10
Identities = 36/263 (13%), Positives = 74/263 (28%), Gaps = 22/263 (8%)
Query: 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA-ESYHK 141
+ + LQ AF +A++L+ N +L K + +
Sbjct: 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103
Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201
+ P +++ L + ++ + L D A+ + V
Sbjct: 104 IIEEQPKNYQVWHHRRVLVEWL-------RDPSQELEFIADILNQDAKNYHAWQHRQWVI 156
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE------SAIACYERCLAVS 255
E +D L ++ E + + N + + +
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
P+ E A N + L D G Y L + SP+ ++ Y+
Sbjct: 217 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVD--------IYEDM 268
Query: 316 LYYNWHYADAMYNLGVAYGEMLK 338
L + + N + E+L
Sbjct: 269 LENQCDNKEDILNKALELCEILA 291
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 3e-10
Identities = 27/227 (11%), Positives = 58/227 (25%), Gaps = 14/227 (6%)
Query: 49 KDALSY-ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
+D Y +L+ + A L +E ++ N + + L+ E
Sbjct: 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------KDLHE 96
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
+ ++ LVE + L +
Sbjct: 97 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 156
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYEKAALER 221
+ + +Q + LK D + V S + + +
Sbjct: 157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 216
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
P A+ + I ++RG L + L + P+ +
Sbjct: 217 PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLV 262
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 6e-07
Identities = 4/66 (6%), Positives = 22/66 (33%)
Query: 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475
I + + + Y+ + + A ++++ + R + + + +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 476 HDDKLF 481
+++
Sbjct: 94 LHEEMN 99
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 90.4 bits (222), Expect = 7e-20
Identities = 36/311 (11%), Positives = 75/311 (24%), Gaps = 31/311 (9%)
Query: 170 AGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELMQYDTALGCYEKA------A 218
GN + + AL+ P A LG V + +L ++
Sbjct: 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 84
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278
+ I +G L++A E+ + + +
Sbjct: 85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP------MHEFLVRI 138
Query: 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
RA LL+ + Q + +
Sbjct: 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL----DNARSQ 194
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL---- 394
+ + + + A + ++ + A + + + L
Sbjct: 195 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254
Query: 395 NNLGVVYTVQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAY 448
N+ + G+ + A ++E+ L LY AG S A
Sbjct: 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314
Query: 449 EQCLKIDPDSR 459
LK+ +
Sbjct: 315 LDALKLANRTG 325
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 71.5 bits (173), Expect = 1e-13
Identities = 34/412 (8%), Positives = 87/412 (21%), Gaps = 90/412 (21%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A + + +A L ++ LE+
Sbjct: 19 AQVAINDGNPDEAERLAKLALEELPPG-----------------------------WFYS 49
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A + G + +G L + + + L L G Q
Sbjct: 50 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQ 108
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ +A ++ M+ +
Sbjct: 109 TAWETQEKAFQLINEQHLEQLP--------------------------MHEFLVRIRAQL 142
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294
L+ A A + V +++ + +A
Sbjct: 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA------------------MLIQCSLA 184
Query: 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354
+L +N+ Y++ ++A + + A +
Sbjct: 185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 244
Query: 355 HC----AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQ 404
N+ + A + + +++L L +Y
Sbjct: 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304
Query: 405 GKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
G+ A ++ A+ + + R ++ + +
Sbjct: 305 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 68.0 bits (164), Expect = 1e-12
Identities = 39/315 (12%), Positives = 68/315 (21%), Gaps = 47/315 (14%)
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----IAKNNMAIALT 270
K E M+AE + N G+ + A + L P +A + + L
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--------- 321
G R+L L + + L I Q + +
Sbjct: 63 CKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 322 -----------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAE 358
+ + + D A +
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418
G + R L++ S + + + + G AAA +
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 419 AA----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMN 470
N + N+ G A E+ + R LL
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300
Query: 471 YINEGHDDKLFEAHR 485
Y G
Sbjct: 301 YWQAGRKSDAQRVLL 315
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 5/139 (3%)
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRD 437
+ ++ V G D A + + A+ P A + LG +
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 438 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 497
G ++ ++ +Q ++ + + + ++ +L ++
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 498 YTSWDNTKDPERPLVIGYV 516
+ +
Sbjct: 124 QHLEQLPMHEFLVRIRAQL 142
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 80.4 bits (197), Expect = 9e-18
Identities = 25/193 (12%), Positives = 65/193 (33%), Gaps = 5/193 (2%)
Query: 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
P+A+ L + G L + + Y A+ +P A Y N + Y ++ Q + A
Sbjct: 2 PSAQ----ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 57
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270
L +A +A+ +G + AIA +R +++ + + +
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117
Query: 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 330
+ K ++ R++ + + + + + + ++ +
Sbjct: 118 RIAKKKRWNSIEERRIHQESELHSYLTRLIA-AERERELEECQRNHEGHEDDGHIRAQQA 176
Query: 331 VAYGEMLKFDMAI 343
+ K+ +
Sbjct: 177 CIEAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.9 bits (188), Expect = 1e-16
Identities = 22/139 (15%), Positives = 46/139 (33%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
A+ G +A CY A++ P + N + Y + + A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
A+ + +A+ LG + S AI ++ + + R + + + I +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 477 DDKLFEAHRDWGKRFMRLY 495
E R + + Y
Sbjct: 124 RWNSIEERRIHQESELHSY 142
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.8 bits (185), Expect = 4e-16
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 12/191 (6%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N L K+ +A A Y + ++ + + +C A A++LD Q
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+ AH G + EA + +A S + D+ ++L++A
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN------FGDDIPSALRIA---- 120
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+K + +++ + + + + + + L ++ I
Sbjct: 121 --KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Query: 235 YKNRGDLESAI 245
+ +
Sbjct: 179 EAKHDKYMADM 189
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.6 bits (182), Expect = 9e-16
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 9/184 (4%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421
LG + ++ D+A+ Q A S+ + + + + A + +I
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALRIAKKKRWNSIEER 131
Query: 422 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 481
+ E+ + + A ++ ++ + D + + I HD +
Sbjct: 132 RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC----IEAKHDKYMA 187
Query: 482 EAHR 485
+
Sbjct: 188 DMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.5 bits (179), Expect = 3e-15
Identities = 26/181 (14%), Positives = 50/181 (27%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A + G K+ A Y A NP A N + Y ++A+ +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442
AL + ++ LG D A +++A + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 443 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 502
E+ + + + + + A + E H D G + D
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 503 N 503
Sbjct: 184 K 184
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.7 bits (151), Expect = 1e-11
Identities = 23/198 (11%), Positives = 56/198 (28%), Gaps = 12/198 (6%)
Query: 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138
S + + +G L + A + A+ +P A +T+ + Y + +A
Sbjct: 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
+AL D A L ++ + + I A + + +
Sbjct: 61 CRRALELDGQSVKAHFFLGQCQLEM-------ESYDEAIANLQRAYSLAKEQRLNFGDDI 113
Query: 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
+ + + ER ++ E+ + + + E + +R +
Sbjct: 114 PSALRIAKK-----KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168
Query: 259 EIAKNNMAIALTDLGTKT 276
+ A
Sbjct: 169 GHIRAQQACIEAKHDKYM 186
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.4 bits (140), Expect = 3e-10
Identities = 26/193 (13%), Positives = 56/193 (29%), Gaps = 7/193 (3%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + EAA Y +A++ +P A+ T+ + +
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRR 63
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
AL++D A++ LG E+ YD A+ ++A + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302
+ ER + + A + + R +G K +
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 303 GDINQGVAYYKKA 315
+ + +
Sbjct: 184 KYMADMDELFSQV 196
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.0 bits (191), Expect = 5e-17
Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 39/203 (19%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A + +N GV+ ++ + AL + + ++ N+G +Y ++ A + R
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 251 CLAVSPNFEIAKNNMAIALT-----DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDI 305
+ + +A + DL K AL+ R
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-------------------G 102
Query: 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 365
NQ + Y L + + +YN+ Y + ++ A LA
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---------- 152
Query: 366 IYKDRDNLDKAVECYQMALSIKP 388
+DKA+EC +P
Sbjct: 153 --PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 3e-14
Identities = 24/172 (13%), Positives = 54/172 (31%), Gaps = 27/172 (15%)
Query: 306 NQGVAY-----YKKALYY----NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
N+GV +K AL ++ +N+G Y + A + + + + H
Sbjct: 10 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 69
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
A A G++Y + D A++ + AL + +
Sbjct: 70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------NQLIDYKIL 111
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
+ E N+ +Y A + + + R++ ++ +
Sbjct: 112 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 2e-10
Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 44/220 (20%)
Query: 49 KDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF 105
+A+S + + + AL + V + S G + A +F
Sbjct: 3 VEAISLWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAF 59
Query: 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165
+ ++ D A A+ G+LY + A + +AL
Sbjct: 60 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN---------------- 103
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
I L+ YN+ +Y++ ++ A A +
Sbjct: 104 ---------QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS--- 151
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265
++ A+ C + P I +
Sbjct: 152 ---------EPRHSKIDKAMECVWKQKLYEP-VVIPVGRL 181
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.7 bits (190), Expect = 4e-16
Identities = 25/257 (9%), Positives = 73/257 (28%), Gaps = 32/257 (12%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E+AA + IY+ R +L A + + ++ +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN-EDEAGNTYVEAY 84
Query: 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333
F+ G++ + ++ ++G + + + N Y
Sbjct: 85 K--------CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK--FELGEILENDLHDY 134
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------- 386
+ + + + + +A + Y +
Sbjct: 135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194
Query: 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAG 439
+ + G+ AAA +++ + +P +A++ +L D+
Sbjct: 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254
Query: 440 SISLAIDAYEQCLKIDP 456
+S ++ +++D
Sbjct: 255 QLSEHCKEFDNFMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (128), Expect = 3e-08
Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 17/161 (10%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 410
A+ C IY+ R L+ A + + A + + + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-----------KIDPDSR 459
+ +E AI + + + + Y + + + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 460 NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 500
+ A +G + + + K M S
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 14/160 (8%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI----- 177
+Y+ L A +S+ KA E + K GN+ + +
Sbjct: 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-AGNTYVEAYKCFKSGGNSVNAVDSLEN 102
Query: 178 -QKYYEALKIDPHYAPAYYNLG-VVYSELMQYDTALGCYEKAAL------ERPMYAEAYC 229
+ + A + LG ++ ++L Y A+ CYE A + + +
Sbjct: 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
+ G A Y + + S +++ ++
Sbjct: 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 73.5 bits (180), Expect = 7e-15
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
+ A+ A +P A ++ + + ++A E ++ + P + + L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 398 GVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456
+ Q + D A + L + + Q ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 457 DSRNAGQNRLLAMNYINEGHDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 511
+ + + + + + DD+L E G F+ + + K L
Sbjct: 131 EKGFLANDT--SFSDVRDI-DDRLGGYIELFSTAGNYFLVPIASINTL-EIKSATSLL 184
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 69.3 bits (169), Expect = 2e-13
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 93 QMQNM---GRL--AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
Q +N G+L A + EA+K P++A + L +G A E +++ P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQ 206
Y P A L + +K A +D Q A + +
Sbjct: 62 EYLPGASQLRHL-------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 114
Query: 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
Y+ + R + D
Sbjct: 115 YEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 68.9 bits (168), Expect = 2e-13
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 1/132 (0%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
EG + Q + +A+ + A + F+ A + P +
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 362 NLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420
L + K + + + + V + +E+ +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128
Query: 421 NPTYAEAYNNLG 432
N+
Sbjct: 129 RQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 64.7 bits (157), Expect = 7e-12
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
+ K+ALS + AL L ++ + L + A +
Sbjct: 2 QWKNALS-------EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLM 54
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
+++KL P+ + L K + A+ A + + +
Sbjct: 55 QSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNL 108
Query: 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226
++ + + + + ++ + +S++ D LG +E A
Sbjct: 109 SMVSQDYEQVSELALQIEELRQEKGFLANDTS--FSDVRDIDDRLG----GYIELFSTAG 162
Query: 227 AY 228
Y
Sbjct: 163 NY 164
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.9 bits (155), Expect = 1e-11
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 464 NRLLAMNYINEGHDDKLFEAHRDW 487
L +
Sbjct: 69 Q--LRHLVKAAQARKDFAQGAATA 90
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.5 bits (154), Expect = 2e-11
Identities = 11/105 (10%), Positives = 24/105 (22%), Gaps = 1/105 (0%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G Q ++ EA+K P A + + ++ A ++ P Y
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 230 NMGVIYKNRGDLESAIACYER-CLAVSPNFEIAKNNMAIALTDLG 273
+ + K + +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 113
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 54.3 bits (130), Expect = 2e-08
Identities = 17/205 (8%), Positives = 40/205 (19%), Gaps = 32/205 (15%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFF 296
+ G L+ A+ + SP +++ L
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID------------------------ 43
Query: 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV-FYELAFHFNPH 355
GD + +++ Y L
Sbjct: 44 ------GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE 97
Query: 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415
+ + ++ E ++ N+ D IE
Sbjct: 98 ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDID-DRLGGYIE 156
Query: 416 KAIAANPTYAEAYNNLGVLYRDAGS 440
A + ++ L + +
Sbjct: 157 LFSTAGNYFLVPIASINTLEIKSAT 181
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (154), Expect = 9e-13
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 5/118 (4%)
Query: 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE----- 415
+ ++L K + +Q + + D + I
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
+ + L V A+ L+ +P + A + L +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (141), Expect = 6e-11
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 6/115 (5%)
Query: 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAF--H 351
ELV +E D+ + ++ + D IV E
Sbjct: 8 ELVSVE-DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 352 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406
+ L V +KA++ + L +P +Q+ ++ K
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 9e-10
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 6/113 (5%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
L++ + + +A K A L + + GI E L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 186 I--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ L V L +Y+ AL P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 5e-09
Identities = 10/111 (9%), Positives = 23/111 (20%), Gaps = 5/111 (4%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAA 218
+ L + +K+ + + E+
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 219 --LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ + + V + E A+ L P AK +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 2e-08
Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 29/136 (21%)
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294
+ DL ++ A + + A
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWC-------------------------- 42
Query: 295 FFELVKLEGDINQGVAYYKKA--LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352
+ DI +G+ ++ D ++ L V + +++ A+ +
Sbjct: 43 -LVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
Query: 353 NPHCAEACNNLGVIYK 368
P +A +I K
Sbjct: 102 EPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 4e-05
Identities = 6/107 (5%), Positives = 21/107 (19%), Gaps = 8/107 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILY---KDEGRLVEAAESYHKALSADPSYKPAAECLA 157
F + + + + + L +
Sbjct: 18 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD---- 73
Query: 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204
+ L + ++ L+ +P A ++ +
Sbjct: 74 -YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 3e-12
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 417 AIAANPTYAEAY-------NNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
AI E Y +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 217 AALERPMYAEAYC-------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
A E Y +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 4e-11
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A LG + FD A+ Y+ A +P N +Y ++ + +K E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 383 ALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431
A+ + ++ +G Y + K A K++A + T +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 5e-10
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 25/148 (16%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
A +G + D ++A+ Y++ + P N A + G
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN-------- 55
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
K + + ++ A A +G +Y + K+ AI
Sbjct: 56 ---------------KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100
Query: 345 FYE--LAFHFNPHCAEACNNLGVIYKDR 370
FY LA H P + C I K++
Sbjct: 101 FYNKSLAEHRTPDVLKKCQQAEKILKEQ 128
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 1e-08
Identities = 24/109 (22%), Positives = 37/109 (33%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ A G + A + Y KA DP+ A V + G K
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ I+ E + A AY +G Y + +Y A+ Y K+ E
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--- 358
+ D + + +Y KA + + N Y E ++ E A E
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76
Query: 359 ----ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
A +G Y + A+ Y +L+
Sbjct: 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 48 GKDALSY---ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDS 104
GK AL N + F AL Y+ E D N+ + + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 FSEAVKLDPQNACAHTHC-------GILYKDEGRLVEAAESYHKALSADPS 148
+A+++ +N + G Y E + +A Y+K+L+ +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 26/142 (18%), Positives = 40/142 (28%), Gaps = 24/142 (16%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310
+ V +A A +G E +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIG-----------------------NSYFKEEKYKDAIH 100
Query: 311 YYKKALYYNWHYADAMYNLGVA 332
+Y K+L + D + A
Sbjct: 101 FYNKSLAEHRT-PDVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 3e-07
Identities = 20/102 (19%), Positives = 36/102 (35%)
Query: 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
G + A + +A +LDP N T+ +Y ++G + E KA+
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189
+ +A +G S +D I Y ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 3e-06
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452
LG + D A + +KA +PT N +Y + G + + E+ +
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 453 KIDPDSRNAGQNRLLAMNYI 472
++ ++R + A I
Sbjct: 66 EVGRENREDYRQIAKAYARI 85
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.0 bits (144), Expect = 5e-11
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVI 366
A + G Y + K+ A++ Y + A NL +
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
Y KAVEC AL + + L G + + ++A EK + NP
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 427 AYNNLGVLYRDAG 439
A + + + A
Sbjct: 134 ARLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 59.2 bits (142), Expect = 1e-10
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------------DPHYAPAYYNLGVVY 201
A ++ + GT G + +Y + + + A+ NL + Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L +Y A+ C +KA + G + ESA +E+ L V+P + A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 262 KNNMAIALTDLG 273
+ + +
Sbjct: 135 RLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 58.8 bits (141), Expect = 1e-10
Identities = 19/205 (9%), Positives = 47/205 (22%), Gaps = 49/205 (23%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+E E+ A G +Y G A+ Y + ++ + A
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---- 59
Query: 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333
A NL + Y
Sbjct: 60 ---------------------------------------------ESFLLAAFLNLAMCY 74
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
++ ++ A+ + A + + G + + A ++ L + P +
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 394 LNNLGVVYTVQGKMDAAAEMIEKAI 418
+ + + + +
Sbjct: 135 RLQIFMCQKKAKEHNERDRRTYANM 159
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 56.9 bits (136), Expect = 7e-10
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 15/144 (10%)
Query: 346 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------------KPNF 390
+E+ A G +Y +AV Y +S +
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL 63
Query: 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
+ NL + Y + A E +KA+ + + G A +E+
Sbjct: 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 451 CLKIDPDSRNAGQNRLLAMNYINE 474
L+++P ++ A + E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKE 147
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 46.1 bits (108), Expect = 3e-06
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALS--------ADPSYKPAAECLAIVLTDLGT 165
+ A G +Y G+ V+A Y K +S ++ K + L +L
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225
++ +AL +D Y G + ++++A G +EK P
Sbjct: 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132
Query: 226 EAYCNMGVIYKNRGDLESA 244
A + + K +
Sbjct: 133 AARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 42.2 bits (98), Expect = 6e-05
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 15/125 (12%)
Query: 55 ANILRSRNKFVDALALYEIV---------------LEKDSGNVEAHIGKGICLQMQNMGR 99
+ K+V A+ Y + +S + A + +C
Sbjct: 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A + +A+ LD N G A + K L +P K A + +
Sbjct: 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141
Query: 160 LTDLG 164
Sbjct: 142 QKKAK 146
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 4e-10
Identities = 17/113 (15%), Positives = 37/113 (32%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435
+ +KP++ + + + + A E+ + + L +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 3e-08
Identities = 16/97 (16%), Positives = 32/97 (32%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
G+I+ + Y +A+ + H N AY + + A P + +
Sbjct: 16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 75
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
+ + ++A Y+ L + N Q L
Sbjct: 76 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 1e-07
Identities = 21/108 (19%), Positives = 38/108 (35%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
G N+D A++CY A+ + P+ +N Y +G A E K
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
+ P + + Y+ A YE+ LK + ++ +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 3e-07
Identities = 28/107 (26%), Positives = 39/107 (36%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266
+P + + Y + E A YE L N K +
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 19/105 (18%), Positives = 36/105 (34%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N S DAL Y ++ D N + + + + A++ + V L P
Sbjct: 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
++ + R EA +Y + L + + E L +
Sbjct: 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 16/144 (11%), Positives = 36/144 (25%), Gaps = 30/144 (20%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
G + G+++ A+ CY + + P+ + +N
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR------------------- 43
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
+GD + K + + A + +F+ A
Sbjct: 44 -----------SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 92
Query: 345 FYELAFHFNPHCAEACNNLGVIYK 368
YE + + L +
Sbjct: 93 TYEEGLKHEANNPQLKEGLQNMEA 116
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 4e-10
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA------------- 183
+ + D ++ L ++G + + N + I+KY +
Sbjct: 7 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 184 ---LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240
K+ P N+G ++ + A+ +A P +A ++ +
Sbjct: 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 126
Query: 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ A+A ++ ++P + + + +
Sbjct: 127 YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.9 bits (128), Expect = 7e-09
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------NPHCAEACNNLGVI 366
++ + N+G + + ++MAI Y + P N+G
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
+ AV+ AL I P+ +++L + + D A ++KA P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 427 AYNNLGVLYR 436
L + +
Sbjct: 147 IQAELLKVKQ 156
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.6 bits (122), Expect = 4e-08
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 22/179 (12%)
Query: 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299
D + + ++ L +S + N+ + A+ + V
Sbjct: 12 DADVDLKDVDKILLISEDL----KNIGNTFFKSQN--WEMAI------------KKYTKV 53
Query: 300 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359
+ ++ A + N+G +M + A+ A +P +A
Sbjct: 54 LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 113
Query: 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418
++ D+A+ + A I P L V EKA
Sbjct: 114 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK----EKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 13/154 (8%)
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC---- 155
+ + + + + + G + A + Y K L + AAE
Sbjct: 15 VDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGA 70
Query: 156 -----LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
+ ++G + Q + EAL+IDP A Y + L +YD A
Sbjct: 71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 130
Query: 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
L +KA P + + + +
Sbjct: 131 LADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/116 (18%), Positives = 37/116 (31%)
Query: 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108
+ A+ + + A A + + + G C + + A DS EA
Sbjct: 44 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 103
Query: 109 VKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
+++DP N A ++ +A KA P K L V +
Sbjct: 104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 5e-10
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDA 409
AE LG + + + AL + L+ L QG +D
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 410 AAEMIEKAIAANPTYAEAYNNLGVLYR 436
A + +K + +P + A NL
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 7e-09
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYE-------LAFHFNPHCAEACNNLGVIYKDRDNLDK 375
A+ + LG + ++ E + L + +LDK
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406
A+ + L + P ++ NL + K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLES 243
A + LG V Y E+A + + +GDL+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A+ ++ L + P + A N+ +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 6e-06
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 23/116 (19%)
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282
+ AE +G + D E+ L EI+ + L L Y +
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--- 59
Query: 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338
GD+++ + KK L + + A NL M K
Sbjct: 60 --------------------GDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182
G + E +AL + + VL L ++ G+ + +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 183 ALKIDPHYAPAYYNLGVVYSEL 204
L++DP + A NL +
Sbjct: 72 LLELDPEHQRANGNLKYFEYIM 93
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 6e-04
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 302 EGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354
E D + ++AL + L A + D A++ + +P
Sbjct: 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77
Query: 355 HCAEACNNLGVIYK 368
A NL
Sbjct: 78 EHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.001
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202
L+A+ S++ L V + +++ E L
Sbjct: 3 LTAEDSFE-----LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57
Query: 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
+ D AL +K P + A N+
Sbjct: 58 QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----------------YAPAYYNLGVV 200
A + + G + I KY EAL H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260
Y++ Y A+ K +A +GV G LE A + +++PN
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 261 AKNNMAIALTDLG 273
+N+ + + L
Sbjct: 137 IRNSYELCVNKLK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 49.6 bits (117), Expect = 1e-07
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQM----------------ALSIKPNFSQSLNNLGVV 400
A G + ++ +++A+ Y+ K NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460
Y A + K + + +A LGV G + A + + ++P++ +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 461 AGQNRLLAMNYINE 474
+ L +N + E
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 26/188 (13%), Positives = 47/188 (25%), Gaps = 48/188 (25%)
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
Y+ E+ A G + + ++ AI Y+ L + E + + +
Sbjct: 6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD----- 60
Query: 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333
NL Y
Sbjct: 61 -------------------------------------------KKKNIEISCNLNLATCY 77
Query: 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393
+ + AI + + +A LGV L++A E A S+ PN
Sbjct: 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137
Query: 394 LNNLGVVY 401
N+ +
Sbjct: 138 RNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 48.5 bits (114), Expect = 4e-07
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----------------AEACNNLGVI 366
A + G + + + + AIV Y+ A F H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426
Y + KA++ L I N ++L LGV G ++ A E + KA + NP +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 427 AYNNLGVLYR 436
N+ +
Sbjct: 137 IRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 55 ANILRSRNKFVDALALYE----------------IVLEKDSGNVEAHIGKGICLQMQNMG 98
N +N+ +A+ Y+ ++ +K + + ++ C
Sbjct: 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 83
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
A D S+ +K+D N A G+ G L EA E+ +KA S +P+ +
Sbjct: 84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143
Query: 159 VLTDLG 164
+ L
Sbjct: 144 CVNKLK 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 6e-09
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185
K + A+ Y A+ AI + + + A++
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK--NRGDLES 243
+D Y YY L ++ AL YE +P +A K + E
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
Query: 244 AIACYERCLAVSPNFEIAKNNM 265
AIA E +V + +I +
Sbjct: 133 AIAGDEHKRSVVDSLDIESMTI 154
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 21/123 (17%), Positives = 42/123 (34%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
AI + Y + Y G A+ YE +K+ P ++A + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 477 DDK 479
++
Sbjct: 130 FER 132
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 5/132 (3%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
D + +Y +A+ N A N +AY + A+ A + +
Sbjct: 23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 82
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421
A+ Y+ + +KP+ + + + + E+AIA +
Sbjct: 83 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-----KAFERAIAGD 137
Query: 422 PTYAEAYNNLGV 433
++L +
Sbjct: 138 EHKRSVVDSLDI 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 32/167 (19%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------- 56
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
+ +A+ + Y Y + + KF A+
Sbjct: 57 -----------------TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 99
Query: 345 FYELAFHFNPHCAEACNNLGVIYK--DRDNLDKAVECYQMALSIKPN 389
YE PH +A K + ++A+ + S+ +
Sbjct: 100 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 5e-07
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 2/156 (1%)
Query: 151 PAAECL--AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
PA L A L A + ++ I+ Y +A++++P A Y N + Y Y
Sbjct: 2 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 61
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
ALG +A Y + Y G +A+ YE + V P+ + AK
Sbjct: 62 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121
Query: 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGD 304
+ K + RA+ S S E + +E +
Sbjct: 122 NKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 157
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 3e-08
Identities = 27/202 (13%), Positives = 54/202 (26%), Gaps = 53/202 (26%)
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279
E+ + G +Y G + A+ Y++ ++ N A
Sbjct: 8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA---------- 57
Query: 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339
+ NL + + ++ F
Sbjct: 58 ---------------------------------------QALRLASHLNLAMCHLKLQAF 78
Query: 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399
AI A + + + + G + ++ + A +Q L + PN + L V
Sbjct: 79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138
Query: 400 VYTVQGKMDAAAEMIEKAIAAN 421
+ A EK + AN
Sbjct: 139 CQQRIRRQLAR----EKKLYAN 156
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 6e-07
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEA---------------LKIDPHYAPAYYNLGVVY 201
+ ++ + GT G + + +Y + K ++ NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+L + A+ KA + G + D E A A +++ L + PN + A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 262 KNNMAIALTDLG 273
K +A+ +
Sbjct: 133 KTQLAVCQQRIR 144
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 15/129 (11%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVIY 367
+ + G Y + K+ A++ Y+ + + NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 368 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427
A+E AL + N + L+ G + + A +K + P A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 428 YNNLGVLYR 436
L V +
Sbjct: 133 KTQLAVCQQ 141
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 9e-06
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMA---------------LSIKPNFSQSLNNLGVVY 401
+ G +Y +A+ Y+ + S NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461
AA E KA+ + + + G + LA +++ L++ P+++ A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 462 GQNRLLAMNYINE 474
+ I
Sbjct: 133 KTQLAVCQQRIRR 145
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 55 ANILRSRNKFVDALALY---------------EIVLEKDSGNVEAHIGKGICLQMQNMGR 99
+ K+ AL Y E + + + +H+ +C
Sbjct: 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 79
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
A +S ++A++LD N + G + A + K L P+ K A LA+
Sbjct: 80 AAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139
Query: 160 LTDLGTSLK 168
+ L
Sbjct: 140 QQRIRRQLA 148
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 52.6 bits (124), Expect = 7e-08
Identities = 37/261 (14%), Positives = 65/261 (24%), Gaps = 22/261 (8%)
Query: 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES--AIACYER 250
LG + + A +EKA + N+GV+Y +E A
Sbjct: 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY 61
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQG-- 308
A N+ + + + L + + L G + G
Sbjct: 62 AKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV 121
Query: 309 ------VAYYKKALYYNWHYADAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAE 358
A + + D LG Y G A+ Y+ A
Sbjct: 122 VTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGC 181
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMI 414
+ + + + + + + NLG + V A E
Sbjct: 182 FNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENF 241
Query: 415 EKAIAANPTYAEAYNNLGVLY 435
+K A + L L
Sbjct: 242 KKGCKLG--AKGACDILKQLK 260
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 37.9 bits (86), Expect = 0.004
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 2/110 (1%)
Query: 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451
+ L LG + A + EKA NLGVLY + +
Sbjct: 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASF 60
Query: 452 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 501
D + LL Y + + + + L
Sbjct: 61 YAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA 110
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.9 bits (113), Expect = 9e-07
Identities = 21/157 (13%), Positives = 36/157 (22%), Gaps = 26/157 (16%)
Query: 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
A G+ GR +A+ AL + + +D
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGP-------------------VLDDLRDFQ 53
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237
A + A+ + + E E P + + Y
Sbjct: 54 FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113
Query: 238 RGDLESAIACYERC-------LAVSPNFEIAKNNMAI 267
A+ Y R L + P + N I
Sbjct: 114 SDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI 150
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.7 bits (89), Expect = 0.001
Identities = 20/134 (14%), Positives = 29/134 (21%), Gaps = 12/134 (8%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
+ +F A L + G V + ++ A L
Sbjct: 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVED 65
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
AHT GR P +P L G +
Sbjct: 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 125
Query: 175 DGIQKYYEALKIDP 188
+ L IDP
Sbjct: 126 RVKTTLADDLGIDP 139
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.3 bits (88), Expect = 0.002
Identities = 10/116 (8%), Positives = 16/116 (13%), Gaps = 12/116 (10%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
G Q + AL A A
Sbjct: 24 AGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFATALVEDKVLAHT 71
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417
+ + P L Y + + A +
Sbjct: 72 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 47.1 bits (110), Expect = 1e-06
Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 25/143 (17%)
Query: 357 AEACNNLGVIYK--DRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYT 402
A L + D+A + A+ I L
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 403 VQGKMDAAAEMIEKAIAANPTYAEA-----------YNNLGVLYRDAGSISLAIDAYEQC 451
D A +KA+ E + + G + A+ +++
Sbjct: 67 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126
Query: 452 LKIDPDSRNAGQNRLLAMNYINE 474
+++ + + + M +
Sbjct: 127 VEMIEERKGETPGKERMMEVAID 149
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 17/160 (10%), Positives = 39/160 (24%), Gaps = 33/160 (20%)
Query: 224 YAEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFEI------------AKNNMAIAL 269
AY + + G+ + A A R + +S +A AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
L + L+ N + + + A+Y+
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQ-------------------DEGKLWISAVYSR 106
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
+A + + A+ ++ + +
Sbjct: 107 ALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 146
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (90), Expect = 6e-04
Identities = 8/82 (9%), Positives = 14/82 (17%), Gaps = 15/82 (18%)
Query: 339 FDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397
+ + + E L + A + N Q
Sbjct: 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113
Query: 398 GVVYTVQGKMDAAAEMIEKAIA 419
M+E I
Sbjct: 114 --------------SMVEDKIQ 121
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (86), Expect = 0.002
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 304 DINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362
D GV + +Y L + ++ ++ MA + + F + +
Sbjct: 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112
Query: 363 LGVIYK 368
++
Sbjct: 113 KSMVED 118
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (86), Expect = 0.002
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 365 VIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423
+ D ++ V+ + L L + G+ A ++
Sbjct: 46 IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105
Query: 424 YAEA 427
+
Sbjct: 106 NKQV 109
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (83), Expect = 0.004
Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 3/89 (3%)
Query: 178 QKYYEALKIDPHYAPAY-YNLGVVYSE-LMQYDTALGCYEKAALERPM-YAEAYCNMGVI 234
Q+ + Y G++ S + + E E + +
Sbjct: 23 QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG 82
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKN 263
G+ A + N +
Sbjct: 83 CYKLGEYSMAKRYVDTLFEHERNNKQVGA 111
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 38.7 bits (88), Expect = 8e-04
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 24/144 (16%)
Query: 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAV 377
+ + +L F+ E + NP A+ G + + + +A+
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 378 ECYQMALSIKPNFSQSLNNLGVVY-----------TVQGKMDAAAEMIEKAIAANPTYAE 426
++ AL I P +++ +G Y + D A + ++A+ P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 427 AYNNLGVLYRDAGSISLAIDAYEQ 450
+L + + L +AY+Q
Sbjct: 122 YLKSLEMTAKAPQ---LHAEAYKQ 142
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.8 bits (89), Expect = 0.002
Identities = 32/285 (11%), Positives = 80/285 (28%), Gaps = 32/285 (11%)
Query: 164 GTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
+ + YE L + H+ +Y ++ ++
Sbjct: 22 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE----AAQYLE---------------- 61
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN------FEIAKNNMAIALTDLGTKT 276
++ G + + + A YER ++ F A + +
Sbjct: 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL-YYNWHYADAMYNLGVAYGE 335
Y R L + ++ + + + + I G +KKA + + + Y
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181
Query: 336 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS---IKPNFSQ 392
+A +EL E + + ++ L+ + P S
Sbjct: 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241
Query: 393 SLNNLGVVYTVQ-GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436
+ + + G + + ++ ++ A E ++ R
Sbjct: 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR 286
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 944 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.86 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.83 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.76 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.39 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.37 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.28 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.28 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.26 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.2 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 99.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.12 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 99.12 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.86 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.86 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 98.83 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 98.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.68 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 98.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.56 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.56 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.95 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.89 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.82 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.79 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.42 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.33 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 97.14 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 97.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.08 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 97.03 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 97.01 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 96.98 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 96.46 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.34 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 96.12 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 96.09 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 94.99 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 93.52 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 88.32 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 83.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-36 Score=337.42 Aligned_cols=381 Identities=27% Similarity=0.375 Sum_probs=359.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
++.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210 (944)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 210 (944)
++++|+..+.++.+..+..... ....+......+....+...........+.........+......+....+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred cccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 9999999999999999988765 444555566778888888888888888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~ 290 (944)
...+.+.+...|++..++..+|.++...|++++|...++++++.+|++..++..++.++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------------------ 216 (388)
T d1w3ba_ 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA------------------ 216 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcc------------------
Confidence 99999999999999999999999999999999999999999999999999998888876654
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
+++++|+..++++....+.....+..+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 217 ------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 217 ------------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp ------------TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
|++++|++.+++++...|.+...+..++.++...|++++|++.|+++++.+|+++.+++++|.+|...|++++|+++|++
T Consensus 285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChhhhhhHHHH
Q 002273 451 CLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 451 al~l~P~~~~a~~~~~~~ 468 (944)
+++++|+++.++.++..+
T Consensus 365 al~l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 365 AIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHTTCTTCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHH
Confidence 999999999998875443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-33 Score=307.44 Aligned_cols=360 Identities=26% Similarity=0.383 Sum_probs=341.4
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.|.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++.+.+|.........+
T Consensus 29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1w3ba_ 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
......+....+...........+..... ....+......+....+...+.+.+...|++..++..+|..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (388)
T d1w3ba_ 109 AALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccc-------cccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccc
Confidence 99999999999999988888887776654 45556667778999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.|++++|...++++++.+|++..++..+|.++...|++++|+..++++....+.....+..++.++...
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 250 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ----------- 250 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------
T ss_pred cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC-----------
Confidence 999999999999999999999999999999999999999999999999999999999988888776554
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
|++++|+..|+++++.+|+++.++..+|.++...|++++|++.+++++...|.+...+..+
T Consensus 251 -------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 311 (388)
T d1w3ba_ 251 -------------------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp -------------------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHH
Confidence 5669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
+.++...|++++|++.|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++++++.++|.+|.++||
T Consensus 312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.8e-25 Score=238.15 Aligned_cols=252 Identities=18% Similarity=0.201 Sum_probs=180.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
.+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++...+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++++|++.+++++...|.................. .........+...+.+.+|+..|+++++.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL---------------GPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhccc---------------ccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 99999999999999998865432211111100000 000001111223344566666666666666
Q ss_pred CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 320 WH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 320 p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
|+ ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+++|+++++++|+++.+++++
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 246 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 246 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHH
Confidence 54 3455666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAE 426 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~ 426 (944)
|.+|..+|++++|+..|+++++++|++..
T Consensus 247 g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 247 GISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 66666666666666666666666655543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.3e-24 Score=229.38 Aligned_cols=250 Identities=20% Similarity=0.273 Sum_probs=218.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+....+..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH--------HHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------LTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYN 196 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 196 (944)
...|++++|++.+++++...|............ .......+...+.+.+|+..|.++++.+|+ ++.++..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999999999998865432211111 111222344567789999999999999887 4678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Q 002273 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 276 (944)
+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|++.|+++++.+|++..++..+|.++...|
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--- 254 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG--- 254 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAM 326 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 326 (944)
++++|+..|+++++++|++...+
T Consensus 255 ---------------------------~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 255 ---------------------------AHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTC----
T ss_pred ---------------------------CHHHHHHHHHHHHHhCCcChhhh
Confidence 55999999999999988876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.5e-20 Score=201.60 Aligned_cols=237 Identities=11% Similarity=0.111 Sum_probs=164.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNM 265 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 265 (944)
+|+..+++..+|.++.+.+.+++|+++++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..++..+
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~ 118 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 118 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44455666666666666666666666666666666666666666666666655 36666666666666666666666666
Q ss_pred HHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002273 266 AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 345 (944)
Q Consensus 266 a~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 345 (944)
+.++..+++. ++|+..++++++.+|++..+|..+|.++...|++++|+..
T Consensus 119 ~~~~~~l~~~------------------------------~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~ 168 (315)
T d2h6fa1 119 RVLVEWLRDP------------------------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 168 (315)
T ss_dssp HHHHHHHTCC------------------------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred hHHHHhhccH------------------------------HHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 6665554433 6666667777777777777777777777777888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 346 YELAFHFNPHCAEACNNLGVIYKDRDN------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419 (944)
Q Consensus 346 ~~~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 419 (944)
++++++++|.+..+|.++|.++...+. +++|++.+.++++++|++..++..++.++... ..+++.+.++++++
T Consensus 169 ~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 169 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred HHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 888888888888888888877776655 57888888888888888888888888776544 35777888888887
Q ss_pred hCCCC--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Q 002273 420 ANPTY--AEAYNNLGVLYRDA--GSISLAIDAYEQCLKI 454 (944)
Q Consensus 420 ~~p~~--~~a~~~la~~~~~~--g~~~eA~~~~~~al~l 454 (944)
+.|+. ..++..++.+|... ++.+.+...+++++++
T Consensus 248 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 248 LQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286 (315)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77653 55566666666443 4445555555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-19 Score=193.71 Aligned_cols=222 Identities=13% Similarity=0.038 Sum_probs=198.2
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN-MGRLAFDSFSEAVKLDPQNACAHT 120 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 120 (944)
...|.-.+++..++.++.+.+.+++|+.+++++++.+|++..+|..+|.++...| ++++|+..++++++.+|++..+|.
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~ 116 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3445567777788999999999999999999999999999999999999999987 599999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+|.++..+|++++|+..++++++++|++..+ +..+|.++...|++++|+..|+++++++|.+..+|.++|.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a-------~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~ 189 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 189 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhhhcchHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence 99999999999999999999999999999775 77788888889999999999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHH
Q 002273 201 YSELMQ------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALTD 271 (944)
Q Consensus 201 ~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~ 271 (944)
+...+. +++|++.+.++++.+|++..++..++.++... ..+++.+.+++++++.|+.. .....++.++..
T Consensus 190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 988776 68999999999999999999999999986654 46889999999999888753 344445544433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=8.5e-21 Score=206.11 Aligned_cols=270 Identities=9% Similarity=-0.082 Sum_probs=168.9
Q ss_pred hCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 60 SRNK-FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN----------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 60 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..++ .++|+.+++++++.+|++..+|..++.++...+ ++++|+.+++++++.+|++..++..+|.++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 3443 478888888888888888888777766655433 35677777777777777777777777766666
Q ss_pred cCC--HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 129 EGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 129 ~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
.++ +++|+..++++++.+|.+..++ +...|.++...+.+++|+..++++++.+|.+..+++.+|.++...|+
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCW------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhh------hhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 543 5666777777776666655431 23445555556666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
+++|+..++++++..|.....+ ..+...+..+++
T Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a------------------------------------------ 227 (334)
T d1dcea1 194 QPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQS------------------------------------------ 227 (334)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSH------------------------------------------
T ss_pred HHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHH------------------------------------------
Confidence 6666555555555544322221 122223333344
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (944)
...+.+++...|.....+..++.++...+++++|+..+.+++..+|.+..++..+|.+
T Consensus 228 ----------------------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 285 (334)
T d1dcea1 228 ----------------------AWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 285 (334)
T ss_dssp ----------------------HHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 4444455555555555555556666666666677777777777777666777777777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
+...|++++|+++|+++++++|.....|..++..+..
T Consensus 286 ~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 286 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 7777777777777777777777666666666666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=5.4e-21 Score=207.68 Aligned_cols=271 Identities=10% Similarity=-0.047 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHcCCCChhHHhHHHHHHH---HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--H
Q 002273 133 VEAAESYHKALSADPSYKPAAECLAIVLT---DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--Y 207 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~~~~la~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 207 (944)
++|+..++++++.+|++..++.....++. ..+..+...+++++|+..++++++.+|++..++..+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 44455555555555554444333333222 223345566788899999999999999999999999999888765 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 208 DTALGCYEKAALERPMYAEAY-CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
++|+..++++++.+|.+..++ ..+|.++...+++++|+..++++++.+|.+..++..++.++..+++.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~----------- 194 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ----------- 194 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC-----------
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH-----------
Confidence 999999999999999988876 46778888899999999999999999999998888888888777654
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (944)
++|+..+++++...|.... ....+...+..+++...+.+++..+|.+...+..++.+
T Consensus 195 -------------------~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~ 251 (334)
T d1dcea1 195 -------------------PDSGPQGRLPENVLLKELE----LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK 251 (334)
T ss_dssp -------------------CCSSSCCSSCHHHHHHHHH----HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHH
T ss_pred -------------------HHHHHHHHHhHHhHHHHHH----HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3333333333333332222 22334455666777777777777777777777777777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
+...+++++|+..+.++++.+|.+..++..+|.++...|++++|+++|+++++++|.....|..|+..+..
T Consensus 252 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 77777777787777777777777777777777777777777778777877777777777777777766654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.5e-17 Score=180.75 Aligned_cols=308 Identities=11% Similarity=-0.041 Sum_probs=212.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
+++.....|.++...|++++|+..++++++..|++. .++..+|.++...|++++|+..|+++++..+..... ..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~ 89 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HY 89 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch-HH
Confidence 456666777777888888888888888887777652 467777888888888888888888887765544332 23
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---- 223 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 223 (944)
....+..++..+...|++..|...+.+++...+ .....+..+|.++...|+++.|...+++++...+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 345567777788888888888888887776521 12345667788888888888888888888876543
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 224 -YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 224 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
....+...+..+...+++.++...+.++............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--------------------------------------- 210 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD--------------------------------------- 210 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH---------------------------------------
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc---------------------------------------
Confidence 3456677777788888888888877776654332111000
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~ 378 (944)
....++..++.++...|++++|...+++++...+.+ ...+.++|.++...|++++|+.
T Consensus 211 ------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 272 (366)
T d1hz4a_ 211 ------------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 272 (366)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 012345667777888888888888888887776544 4566778888888888888888
Q ss_pred HHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHH
Q 002273 379 CYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 379 ~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~la~~~~~~g~~~e 443 (944)
.+++++.. .|....++..+|.+|...|++++|++.+++++++.+. ....+..+...+...++.++
T Consensus 273 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e 352 (366)
T d1hz4a_ 273 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 352 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 88888754 2344567888888888888888888888888876331 12333344444455555555
Q ss_pred HHH
Q 002273 444 AID 446 (944)
Q Consensus 444 A~~ 446 (944)
+..
T Consensus 353 ~e~ 355 (366)
T d1hz4a_ 353 LEQ 355 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.3e-18 Score=175.66 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (944)
.+.+.|+..+++++...+.... ..+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.+|..+|++++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~---~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHH
Confidence 3556777788888776553332 3477899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++......++......+
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 153 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD 153 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998877766665555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.2e-17 Score=173.63 Aligned_cols=225 Identities=16% Similarity=0.132 Sum_probs=144.1
Q ss_pred ChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 172 NTQDGIQKYYEALKIDP----HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (944)
Q Consensus 172 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (944)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 45566666677665432 23456777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY 327 (944)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 327 (944)
|+++++++|++. .++.
T Consensus 94 ~~~al~~~p~~~----------------------------------------------------------------~a~~ 109 (259)
T d1xnfa_ 94 FDSVLELDPTYN----------------------------------------------------------------YAHL 109 (259)
T ss_dssp HHHHHHHCTTCT----------------------------------------------------------------HHHH
T ss_pred hhHHHHHHhhhh----------------------------------------------------------------hhHH
Confidence 777666666554 4455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY----TV 403 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~ 403 (944)
.+|.++...|++++|+..|+++++.+|.+......++..+...+..+.+...........+..... .+...+ ..
T Consensus 110 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 187 (259)
T d1xnfa_ 110 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISE 187 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHH
Confidence 556666666666666666666666666666666666665555555544444444444443333211 111111 12
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.+..+.+...+.......|...++++++|.+|...|++++|+++|++++..+|++...+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 188 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 23345555555666666677778888899999999999999999999999988875443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.2e-16 Score=173.34 Aligned_cols=306 Identities=11% Similarity=-0.034 Sum_probs=232.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 115 (944)
.++.....|.+++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+..|+++++..+..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45667778999999999999999999999999876 4578899999999999999999999999865432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh-hHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----- 189 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----- 189 (944)
..++..++.++...|++..|...+.+++...+... ......+.++..+|.++...|+++.+...+.+++...+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 35678899999999999999999999987643221 112234556788899999999999999999999987654
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
...++...+..+...+++.++...+.++...... ...++..++.++...|++++|...+++++...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 249 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF- 249 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-
Confidence 3567788899999999999999999998875432 23467778888999999999999998887776653221
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
....+..+|.++...|++++|
T Consensus 250 -----------------------------------------------------------~~~~~~~la~~~~~~g~~~~A 270 (366)
T d1hz4a_ 250 -----------------------------------------------------------LQGQWRNIARAQILLGEFEPA 270 (366)
T ss_dssp -----------------------------------------------------------GHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHcCCHHHH
Confidence 123345567777777777777
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCH
Q 002273 343 IVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------FSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 343 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~ 407 (944)
+..+++++.. .|....++..+|.+|...|++++|++.+++++++.+. ....+..+...+...++.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 350 (366)
T d1hz4a_ 271 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 350 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7777777643 2344667788888888888888888888888776331 122333444444555555
Q ss_pred HHHHH
Q 002273 408 DAAAE 412 (944)
Q Consensus 408 ~~A~~ 412 (944)
+++..
T Consensus 351 ~e~e~ 355 (366)
T d1hz4a_ 351 PELEQ 355 (366)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 55543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-15 Score=172.48 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
+|+++|++|+++.|+.++++.++|.++...+++++| |++++..+|+....+...+.+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 788899999999888888889999999988888876 8888888887655543333222 22355677777776654
Q ss_pred CCCc--HHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 255 SPNF--EIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 255 ~p~~--~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
.... ......+... +....+.|+.++..+++++..+|++...+..+|..
T Consensus 79 ~~~~~~~~~~~~~~~~-----------------------------l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~ 129 (497)
T d1ya0a1 79 RANPNRSEVQANLSLF-----------------------------LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGII 129 (497)
T ss_dssp SSCTTTTHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHTC------------------
T ss_pred ccCccHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHH
Confidence 4221 1111111100 12223455777777777777778888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
+...|++++|+..+++++..++ ..++.++|.++...+++++|+.+|++|++++|+++.+++++|.++...|++.+|+.
T Consensus 130 ~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~ 207 (497)
T d1ya0a1 130 SNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp -------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888777665 35777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 413 MIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 413 ~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
+|.+++...|..+.++.+|+.++.+..
T Consensus 208 ~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 208 YYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 888888888888888888887776544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.1e-15 Score=171.65 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+++|++++++.|+.++++.++|.++..++++++| |++++..+|+....+.....+...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~----------------- 63 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNH----------------- 63 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHH-----------------
Confidence 799999999999999999999999999999999876 899999999876665433322211
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhC--CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYN--WHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 365 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~--p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 365 (944)
.+..+++.+++..+.. ++.. .....++.++...+.|+.|+..+.+++.++|++...+.++|.
T Consensus 64 ---------------~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~ 128 (497)
T d1ya0a1 64 ---------------AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGI 128 (497)
T ss_dssp ---------------HTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred ---------------HHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHH
Confidence 1255666777766543 2222 223345666777889999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
.+...|++++|+..+++++..++ ..++.++|.++...|++++|+.+|++|++++|++..++++||.++...|++.+|+
T Consensus 129 ~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~ 206 (497)
T d1ya0a1 129 ISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp --------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998776 4688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 446 DAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 446 ~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
.+|.+++.++|..+.++.|+...+..
T Consensus 207 ~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 207 FYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999997655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=6.6e-14 Score=147.49 Aligned_cols=200 Identities=18% Similarity=0.100 Sum_probs=157.7
Q ss_pred ChHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002273 47 EGKDALSYANILRSRN-------------KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g-------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (944)
++..++..|......+ +|++|..+|.+ .|.+|...+++++|++.|.+++++..
T Consensus 3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~~~ 68 (290)
T d1qqea_ 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADYQK 68 (290)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4566777776666543 46666666655 48889999999999999999998632
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHhh
Q 002273 114 ------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALKI 186 (944)
Q Consensus 114 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 186 (944)
.....+..+|.+|..+|++++|+..|++++++.+..... ...+.++..+|.++.. .|++++|+..|++++++
T Consensus 69 ~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc-hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 234678999999999999999999999999987665432 3346678888988865 69999999999999987
Q ss_pred CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 187 DPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-------EAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 187 ~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
.+. ...++..+|.++..+|+|++|+..|++++...+... ..+...+.++...|++..|...++++++
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 332 255688999999999999999999999999877643 4567889999999999999999999999
Q ss_pred hCCCcHHH
Q 002273 254 VSPNFEIA 261 (944)
Q Consensus 254 ~~p~~~~~ 261 (944)
++|.....
T Consensus 228 ~~~~~~~s 235 (290)
T d1qqea_ 228 EDPNFADS 235 (290)
T ss_dssp C-------
T ss_pred hCCCccch
Confidence 98876543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2e-13 Score=133.59 Aligned_cols=133 Identities=16% Similarity=0.281 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
+++.|..+...|++++|++.|.+ +.+.++.+++++|.+|..+|++++|++.|+++++++|+++.+++++|.++.++|
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 34678999999999999999986 456678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 406 KMDAAAEMIEKAIAANPTY----------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~----------------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
++++|++.|++++...+.+ .++++++|.++..+|++++|++.+++++++.|+....
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~ 156 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchH
Confidence 9999999999999875532 5789999999999999999999999999999985433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.2e-13 Score=123.20 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+...|..++..|+|++|+.+|+++++.+|.++.++..+|.++..+|++++|+..+.++++++|+++.+++.+|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
.+|++++|+..|+++++.+|+++.....+
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999998864443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.1e-13 Score=123.52 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=60.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
...|..+...|++++|+.+|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|+++.+++++|.++..+|+
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhh
Q 002273 441 ISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+++|+..|+++++++|+++.+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~ 110 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEG 110 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555555555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=1.3e-12 Score=138.62 Aligned_cols=160 Identities=5% Similarity=-0.017 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECY 380 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 380 (944)
|++++|...|+++++..|.+ ..+|..++......|+++.|.++|+++++..|.+...+...+..... .|+.+.|..+|
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34455555555555555544 33566777777778888888888888888888888888888876544 57888899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 381 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 381 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
+++++..|+++..+..++..+...|++++|..+|++++...|.+ ..+|..........|+.+.+.+.++++.++.|
T Consensus 193 e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999876644 34677777777888999999999999999998
Q ss_pred CChhhh
Q 002273 457 DSRNAG 462 (944)
Q Consensus 457 ~~~~a~ 462 (944)
+.....
T Consensus 273 ~~~~~~ 278 (308)
T d2onda1 273 EEYEGK 278 (308)
T ss_dssp TTTSSC
T ss_pred cccccc
Confidence 876543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=9.3e-14 Score=146.31 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002273 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (944)
+.++++++-+........+..+. .....+|++|.++|.++ |.+|...+++++|++.|.+++++.
T Consensus 4 ~~~~l~~aek~~~~~~~~~~~~~--~~~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 4 PVELLKRAEKKGVPSSGFMKLFS--GSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp HHHHHHHHHHHSSCCCTHHHHHS--CCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHhc--CCccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45556665554443322221111 11233567777766654 788999999999999999999875
Q ss_pred CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 002273 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSE-LMQYDTALGCYEKAAL 219 (944)
Q Consensus 147 p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 219 (944)
..... ....+.++.++|.+|...|++++|+..|++++++.+.. ..++..+|.+|.. .|++++|+++|+++++
T Consensus 68 ~~~~~-~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~ 146 (290)
T d1qqea_ 68 KKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (290)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 44322 12357789999999999999999999999999885543 5678889988865 6999999999999987
Q ss_pred hCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 220 ERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 220 ~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
+.+. ...++..+|.++..+|++++|+..|++++...+....
T Consensus 147 l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~ 193 (290)
T d1qqea_ 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence 6432 2456889999999999999999999999998877643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.9e-12 Score=135.93 Aligned_cols=228 Identities=10% Similarity=-0.016 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ--------------NMGRLAFDSFSEAVKL-DPQNACAHTHCGILYKD 128 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 128 (944)
...+..+|++++...|.++..|+..+..+... +..++|...|+++++. .|.+...+..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 56688899999999999999999888766443 3458899999999974 78889999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS-ELMQY 207 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~ 207 (944)
+|++++|...|+++++..|.+... ++...+......|+++.|.+.|+++++..|.....+...+.... ..|+.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~------~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~ 185 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTL------VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHH------HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred cccHHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCH
Confidence 999999999999999999887542 35666777788899999999999999999999999999988754 46899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhc
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~ 287 (944)
+.|..+|+++++..|.++..+...+..+...|++++|..+|++++...|.++.-...+...+...
T Consensus 186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f--------------- 250 (308)
T d2onda1 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF--------------- 250 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999998876543211111111111
Q ss_pred CCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002273 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323 (944)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~ 323 (944)
-...|+.+.+.++++++.+..|...
T Consensus 251 -----------E~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 251 -----------ESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp -----------HHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred -----------HHHcCCHHHHHHHHHHHHHHCcccc
Confidence 2335778999999999988887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.6e-13 Score=127.66 Aligned_cols=123 Identities=18% Similarity=0.194 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
..+...|..++..|+|++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 34556788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHH
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAID 446 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~--~g~~~eA~~ 446 (944)
+|++++|+..+++++.++|++..++..++.+... .+.+++|+.
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888777766533 233444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=4.4e-13 Score=131.14 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
-.++..|..+...|+|++|++.|+++ .|.++.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 35678899999999999999999874 567889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHH---------hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAA---------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (944)
+|++++|+..|++++...+.+.... ...+.+++++|.++...|++++|++.+.++++..|+
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999998876653210 011345566666666666666666666666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8.1e-13 Score=125.13 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=105.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.++.+...|..+++.|+|++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
..+|++++|+..|++++.++|++......+.
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~ 119 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQ 119 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999988654433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=9.4e-13 Score=130.03 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+++.+...|..++..|+|++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
..+|++++|+..|+++++++|++...
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 99999999999999999998865543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=8.4e-13 Score=130.38 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
+..+...|..++..|++++|+..|+++++++|+++.++.++|.+|...|++++|+..|+++++++|++..+|+++|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455666666666777777777777777777777777777777777777777777777777767776777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 437 DAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.+|++++|+..|+++++++|++...+
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 77777777777777776666554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.37 E-value=1.4e-10 Score=119.61 Aligned_cols=230 Identities=21% Similarity=0.300 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNM 265 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (944)
++.+++.+|..+...+++++|+++|+++.+. ++..+++.||.+|.. ..++..|..+++.+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 3556666777777777777777777776554 456666677777665 55666676666665543 344455555
Q ss_pred HHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHH
Q 002273 266 AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDM 341 (944)
Q Consensus 266 a~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 341 (944)
+.++.... ....+.++|...++++.+.. ...+...++..+.. ......
T Consensus 77 ~~~~~~~~--------------------------~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~ 128 (265)
T d1ouva_ 77 GNLYYSGQ--------------------------GVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKK 128 (265)
T ss_dssp HHHHHHTS--------------------------SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cccccccc--------------------------ccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHH
Confidence 54443221 12345566667776666543 34445555555553 334556
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEM 413 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 413 (944)
|...+.+... +.+...+..+|.++.. ..+...+..+++.+.+ +.++.+.+++|.+|.. ..++++|+.+
T Consensus 129 a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~ 204 (265)
T d1ouva_ 129 AVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALAR 204 (265)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhh
Confidence 6666665444 4456777777777775 4566777777777764 4567888888888776 5678888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 002273 414 IEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 414 l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~ 457 (944)
|+++.+. .++.+.++||.+|.. ..++++|.++|+++.+....
T Consensus 205 ~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 205 YSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred Hhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8888776 457788888888875 34788888888888777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.4e-11 Score=117.75 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 387 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 387 (944)
+..+...|..++..|++++|+..|++++...|.. ..++.++|.+|.+.|++++|+.+++++++++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 3456678889999999999999999998886643 2344556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~ 442 (944)
|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+....++..
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666655544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.32 E-value=6.6e-12 Score=110.60 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=64.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
.+.+|.++.+.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 45566666666777777777777777777767777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHH
Q 002273 440 SISLAIDAYEQCL 452 (944)
Q Consensus 440 ~~~eA~~~~~~al 452 (944)
++++|++.+++.|
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7777777666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.31 E-value=1.6e-09 Score=111.38 Aligned_cols=227 Identities=20% Similarity=0.258 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (944)
.++.+|..+...+++++|+++|+++.+. ++..+++.||.+|.. ..++..|..+++++... .++.+...+|.+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~ 79 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccc
Confidence 5888999999999999999999999875 578999999999997 77999999999998765 467888889988
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 235 YKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 235 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
+.. ..+.++|...++++....+ ..+...++..+.... ........+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~--------------------------~~~~~~~~a~~ 131 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGK--------------------------VVTRDFKKAVE 131 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCS--------------------------SSCCCHHHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCC--------------------------cccchhHHHHH
Confidence 876 5688999999999987654 444555555444322 12455677777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Q 002273 311 YYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQM 382 (944)
Q Consensus 311 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 382 (944)
.+.+... +.+...+..+|..+.. ..+...+...++.+.+ ..++.+++++|.+|.. ..++++|+.+|++
T Consensus 132 ~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~ 207 (265)
T d1ouva_ 132 YFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 207 (265)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred Hhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhh
Confidence 7777655 4567889999999987 4567788888888775 4578999999999987 6799999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 002273 383 ALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 383 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~ 423 (944)
+.+. .++.++++||.+|.. ..++++|+++|+++.+....
T Consensus 208 aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 208 ACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9887 578999999999986 44899999999999888654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.29 E-value=1.2e-11 Score=109.03 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
....+..|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|.
T Consensus 16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH
Q 002273 128 DEGRLVEAAESYHKAL 143 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al 143 (944)
.+|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 9999999999999875
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.1e-11 Score=110.24 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
..+..+|..++..|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..++++++++|++...+..++.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (944)
+|.++...+++++|+..|++++..+++ ......
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 117 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHH
Confidence 999999999999999999999988765 444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.28 E-value=5.6e-11 Score=113.17 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 387 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 387 (944)
+..+...|..++..|+|++|+..|++++...+.. ..++.++|.+|..+|++++|+..++++++++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 3556778999999999999999999998764332 2345667777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~ 442 (944)
|++..+++.+|.++..+|++++|+..|+++++++|++..+...++.+....+.+.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence 7777777777777777777777777777777777777777777777766655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.3e-11 Score=112.54 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------HHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSADPSYKP--------AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
...|..++..|++++|+..|++++...|.... .......++.++|.++...|++++|+..++++++++|+++
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~ 96 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 96 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence 33444444444444444444444444333211 1112233566788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (944)
.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....+...+.
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888877666555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.6e-12 Score=112.98 Aligned_cols=103 Identities=10% Similarity=0.006 Sum_probs=62.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTY--AEAYNNLGVLYR 436 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~ 436 (944)
.++..+...+++++|++.|+++++++|+++.+++++|.++...+ ++++|+..|++++..+|.. .++++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666666666665433 3345666666666655543 345666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 437 DAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.+|++++|+++|+++++++|++..+...
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 6666666666666666666666655543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.27 E-value=2.5e-11 Score=115.94 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
.+...|..+...|++++|+..|+++++..+. ..+.....+...++|....++.++|.++.++
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhh
Confidence 3556788899999999999999988764211 1111111222233444455555566666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|++++|+..++++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+...
T Consensus 91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~ 150 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 150 (169)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666666666666666666666666666666666666666666666666666665555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.26 E-value=4.8e-11 Score=111.60 Aligned_cols=124 Identities=18% Similarity=0.163 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
..+...|..++..|+|.+|+..|++++...+..... .+.........+. ..++.++|.+|.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~~Nla~~~~~ 79 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNIE-----ISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhHH-----HHHHhhHHHHHHH
Confidence 345667888888999999999999988765432100 0000000111111 2355667777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
+|++++|+++++++++++|++..+++++|.++..+|++++|+..|+++++++|++..+...+
T Consensus 80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777766665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.3e-11 Score=109.97 Aligned_cols=111 Identities=6% Similarity=-0.060 Sum_probs=92.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF--SQSLNNLGVVYT 402 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 402 (944)
.++..+...+++++|++.|++++..+|+++.+++++|.++...+ ++++|+..|+++++.+|.. ..+++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 46677778888999999999999999999999999999887654 4557999999998887755 458889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
.+|++++|+++|+++++++|++..+...++.+..+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988888887776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.26 E-value=1.8e-11 Score=116.95 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
..++.++|.++.++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HcCCH
Q 002273 403 VQGKM 407 (944)
Q Consensus 403 ~~g~~ 407 (944)
.....
T Consensus 157 ~l~~~ 161 (169)
T d1ihga1 157 KIKAQ 161 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.22 E-value=1.6e-11 Score=113.52 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 002273 338 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-- 405 (944)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 405 (944)
.|++|+..|+++++++|+++.+++++|.++.. .+.+++|+..|+++++++|+++.+++++|.+|..+|
T Consensus 12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~ 91 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 91 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence 34444444444444444444444444444332 233456677777777777777777777777666554
Q ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 406 ---------KMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 406 ---------~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++++|+++|+++++++|++..++..|+.+..
T Consensus 92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence 3566777777777777777766666666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.21 E-value=2.5e-10 Score=106.54 Aligned_cols=120 Identities=22% Similarity=0.217 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 154 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
...+..+...|..++..|++.+|+..|++++...+.. ..++.++|.+|..+|++++|+..++++
T Consensus 14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a 93 (153)
T d2fbna1 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence 3445567889999999999999999999999875432 246788999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 218 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+.
T Consensus 94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888877765554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.7e-11 Score=107.31 Aligned_cols=99 Identities=24% Similarity=0.335 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHH
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------EAYNNL 431 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~~~l 431 (944)
.+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.+. .++..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777777777777777777776665442 356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
|.++..++++++|+++|++++..+|+
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77777777888888888888777665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.20 E-value=2.6e-10 Score=108.38 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh--------hHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
+...|..++..|++.+|+..|++++...+... ........++.++|.++..+|++++|+..++++++++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 44455555555555555555555554332211 1112234457778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES-AIACYERCL 252 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al 252 (944)
..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....+.+.+ ..+.|.+++
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888877766655433 334444433
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.2e-11 Score=132.23 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=127.8
Q ss_pred CCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 676 PALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.+++++.++++.+.+ ..|..+.+++++.++.+..|+..+++++++... ..+++..++.|+ .+++.|.|...
T Consensus 189 ~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~----~~~~~~~~~~~~-~~~v~~~g~~~-- 261 (370)
T d2iw1a1 189 NGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP----RKFEALAEKLGV-RSNVHFFSGRN-- 261 (370)
T ss_dssp TTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC----HHHHHHHHHHTC-GGGEEEESCCS--
T ss_pred cCCCccceEEEEEeccccccchhhhcccccccccccccceeeeccccccc----cccccccccccc-ccccccccccc--
Confidence 456667767777775 478999999999999999999998877654222 356677788898 58999998753
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQL 828 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~~l 828 (944)
+....|+.+||++-|.-+ +.|.+.+|||++|+|||+ +++|+ .++..-+..-+|+ .|.+++.+...+|
T Consensus 262 -~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~-------s~~~g~~e~i~~~~~G~l~~~~~d~~~la~~i~~l 333 (370)
T d2iw1a1 262 -DVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT-------TAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKA 333 (370)
T ss_dssp -CHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE-------ETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHH
T ss_pred -ccccccccccccccccccccccceeeecccCCeeEEE-------eCCCChHHHhcCCCceEEEcCCCCHHHHHHHHHHH
Confidence 566677889999988755 789999999999999998 55551 1222212222454 5899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
++|++.+++|++..|+...+...+ .+.+.+++.|
T Consensus 334 l~d~~~~~~~~~~ar~~~~~~~~~---~~~~~~~~ii 367 (370)
T d2iw1a1 334 LTQSPLRMAWAENARHYADTQDLY---SLPEKAADII 367 (370)
T ss_dssp HHCHHHHHHHHHHHHHHHHHSCCS---CHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHH
Confidence 999999999999998876543334 4445555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.12 E-value=8e-11 Score=108.75 Aligned_cols=111 Identities=21% Similarity=0.144 Sum_probs=96.2
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM----------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 368 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (944)
+.+.+.+++|+..|+++++.+|++++++..+|.++... +.+++|+..|+++++++|+++.+++++|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34456689999999999999999999999999999854 45689999999999999999999999999998
Q ss_pred HCC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 369 DRD-----------NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409 (944)
Q Consensus 369 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 409 (944)
.+| ++++|+++|+++++++|++..++..++.+....+.+.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 765 47999999999999999999999998888644433333
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.12 E-value=1.1e-10 Score=131.89 Aligned_cols=163 Identities=15% Similarity=0.035 Sum_probs=122.4
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
++.++|+++.+ ..|..+.+++++.++++. +.+|++.|.+ .......+++.... . .++|.|.+... .....
T Consensus 289 ~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~G--~~~~~~~~~~~~~~--~-~~~v~~~~~~~-~~~~~ 360 (477)
T d1rzua_ 289 DGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGAG--DVALEGALLAAASR--H-HGRVGVAIGYN-EPLSH 360 (477)
T ss_dssp SSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEECB--CHHHHHHHHHHHHH--T-TTTEEEEESCC-HHHHH
T ss_pred CCccEEEEEeeeeecCCcHHHHHHHHHHHhh--CCeEEEEecC--CchHHHHHHHHHhh--c-CCeEEEEcccC-hhHHH
Confidence 44556777664 499999999999999875 6678877755 23444445444444 3 48899988765 45666
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc-------------------CC
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------------------KN 817 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~-------------------~~ 817 (944)
..|..+|+++-|+-+ +.|++.+|||++|+|||+ +++| |++|+|. .|
T Consensus 361 ~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVa-------s~~G-------G~~E~v~d~~~~~~~~~~~~G~l~~~~d 426 (477)
T d1rzua_ 361 LMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTG-------GLADTVIDANHAALASKAATGVQFSPVT 426 (477)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSH-------HHHHHCCBCCHHHHHTTCCCBEEESSCS
T ss_pred HHHHhCccccCCccccCCCHHHHHHHHcCCCEEE-------cCCC-------CCcceeecCCccccccCCCceEEeCCCC
Confidence 678899999988877 889999999999999999 8888 7777652 36
Q ss_pred HHHHHHHHH---HHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 818 EDEYVQLAL---QLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 818 ~~~y~~~a~---~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
.+++.+... .+..|++.+++++++. +. ..|+++..+.++|++|+++.
T Consensus 427 ~~~la~ai~~~l~~~~~~~~~~~~~~~a---~~--~~fsw~~~a~~~~~lY~~ll 476 (477)
T d1rzua_ 427 LDGLKQAIRRTVRYYHDPKLWTQMQKLG---MK--SDVSWEKSAGLYAALYSQLI 476 (477)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH---HT--CCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHH---HH--hhCCHHHHHHHHHHHHHHHh
Confidence 777777654 4446888877776544 32 35999999999999999863
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.00 E-value=3.1e-10 Score=126.29 Aligned_cols=169 Identities=13% Similarity=0.096 Sum_probs=123.3
Q ss_pred EEEecC---CCCcCCHHHHHHHHHHHh--HcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 684 TFGSFN---NLAKITPKVLQVWARILC--AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 684 ~f~~~~---~~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
++..++ ...|..+.++++|..+.. ..|+.+|+++|.+ .+.....+ +.+.+ .. .+++.|.+..+ ..+...
T Consensus 251 ~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~--~~~~~~~~-~~~~~-~~-~~~~~~~~~~~-~~~~~~ 324 (437)
T d2bisa1 251 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWA-RSLEE-KH-GNVKVITEMLS-REFVRE 324 (437)
T ss_dssp EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHHHHHH-HHHHH-TC-TTEEEECSCCC-HHHHHH
T ss_pred eEEEeecccccchhHHHHHhhhcccccccccccceeeeeccc--ccccccch-hhhcc-cc-ccceeccccCc-HHHHHH
Confidence 344444 446899999999998754 4689999999865 22223223 33333 23 46677777765 678888
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccc--cCCHHHHHHHHHHHhc-CH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLI--AKNEDEYVQLALQLAS-DV 832 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v--~~~~~~y~~~a~~l~~-d~ 832 (944)
.++.+||++-|..+ +.|++.+|||+||+|||+ +++|+. ++.. + ..++ ..|.++..+...++.. |+
T Consensus 325 ~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~-------~~~g~~~e~i~~-~-~G~~~~~~d~~~la~~i~~ll~~~~ 395 (437)
T d2bisa1 325 LYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGLRDIITN-E-TGILVKAGDPGELANAILKALELSR 395 (437)
T ss_dssp HHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEE-------ESCTTHHHHCCT-T-TCEEECTTCHHHHHHHHHHHHTTTT
T ss_pred HHhhhccccccccccccchHHHHHHHCCCCEEE-------eCCCCcHHhEEC-C-cEEEECCCCHHHHHHHHHHHHhCCH
Confidence 89999999888765 789999999999999998 566521 1111 1 2233 3689999999888765 78
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 833 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 833 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
+.++++++..++... .|+++.++++++++|+++.+
T Consensus 396 ~~~~~~~~~~~~~~~---~~s~~~~a~~~~~iY~~~i~ 430 (437)
T d2bisa1 396 SDLSKFRENCKKRAM---SFSWEKSAERYVKAYTGSID 430 (437)
T ss_dssp SCTHHHHHHHHHHHH---HSCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHH
Confidence 889999999988643 38999999999999997654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.5e-09 Score=89.40 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
+.++.+|.++.+.|++++|+.+|++|+++.|. ...++.++|.++.+.|++++|+.+|+++++++|+++.++.+
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34455555555555555555555555554322 13455555555555555555555555555555555555555
Q ss_pred HHHH
Q 002273 431 LGVL 434 (944)
Q Consensus 431 la~~ 434 (944)
++.+
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.87 E-value=2.1e-09 Score=100.50 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=74.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-------- 423 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------- 423 (944)
|..++..|+|++|++.|++++++.|+. ..++.++|.+|..+|++++|+..+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 555666666777777777776665543 346778888888888888888888888876331
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 424 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 424 ---~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
...+++++|.+|..+|++++|++.|++++++.|+.....
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 245788999999999999999999999999988665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=3.4e-09 Score=89.48 Aligned_cols=88 Identities=17% Similarity=0.034 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (944)
++-.+.+|.++++.|++.+|+.+|++++++.|.+.......+.++.++|.++...|++++|+..|+++++++|++..++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 45678999999999999999999999999887766555566778888888888888888888888888888888888888
Q ss_pred HHHHHHHH
Q 002273 196 NLGVVYSE 203 (944)
Q Consensus 196 ~la~~~~~ 203 (944)
+++.+...
T Consensus 85 Nl~~~~~~ 92 (95)
T d1tjca_ 85 NLKYFEYI 92 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87765443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.86 E-value=1.8e-09 Score=101.07 Aligned_cols=104 Identities=19% Similarity=0.041 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN------------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-- 114 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 114 (944)
...+..|..++..|+|++|+..|+++++..|+. ..++..+|.+|..+|++++|+..+++++++.|.
T Consensus 10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~ 89 (156)
T d2hr2a1 10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 89 (156)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence 345566999999999999999999999987753 467889999999999999999999999986432
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 115 ---------NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 115 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
...+++.+|.+|..+|++++|+..|++++++.|+....
T Consensus 90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 23478999999999999999999999999987655443
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.83 E-value=1.2e-08 Score=99.39 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=102.7
Q ss_pred cCCCCcCCHHHHHHHHHHHh--HcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccE
Q 002273 688 FNNLAKITPKVLQVWARILC--AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDI 765 (944)
Q Consensus 688 ~~~~~K~~~~~~~~~~~il~--~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di 765 (944)
++.+.|..+.+++++..+.. ..|+.+|+++|.+ .+. .+...+.+... . .+.+.+.+..+ .++....|+.+||
T Consensus 41 l~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~~~-~~~~~~~~~~~-~-~~~~~~~~~~~-~~~l~~~~~~~di 114 (196)
T d2bfwa1 41 FDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPE-LEGWARSLEEK-H-GNVKVITEMLS-REFVRELYGSVDF 114 (196)
T ss_dssp BCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHH-HHHHHHHHHHH-C-TTEEEECSCCC-HHHHHHHHTTCSE
T ss_pred CCccccCHHHHHHHHHhhhcccCCCCeEEEEEeec--ccc-hhhhhhhhhhc-c-ceeEEeeeccc-cccchhccccccc
Confidence 44557899999999999864 4689999998764 222 23333333332 2 34566666655 6788899999999
Q ss_pred EecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc-CCcccc--cCCHHHHHHHHHHHhc-CHHHHHHHHH
Q 002273 766 SLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLAS-DVTALANLRM 840 (944)
Q Consensus 766 ~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~-gl~~~v--~~~~~~y~~~a~~l~~-d~~~~~~~r~ 840 (944)
++-|..+ +.|++.+|||+||+|||+ ++++.. -.-+ +-..++ ..|.+++++....+.. |++.+.++++
T Consensus 115 ~v~ps~~e~~~~~~~Eam~~G~pvI~-------~~~~~~-~e~i~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 186 (196)
T d2bfwa1 115 VIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGL-RDIITNETGILVKAGDPGELANAILKALELSRSDLSKFRE 186 (196)
T ss_dssp EEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHHH-HHHCCTTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccchhhhhcCceeee-------cCCCcc-ceeecCCceeeECCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9988866 669999999999999999 666521 1211 111232 3588899988888665 8999999999
Q ss_pred HHHHHh
Q 002273 841 SLRDLM 846 (944)
Q Consensus 841 ~~~~~~ 846 (944)
..|++.
T Consensus 187 ~a~~~a 192 (196)
T d2bfwa1 187 NCKKRA 192 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.82 E-value=5.3e-09 Score=98.88 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+.+++|..-=.+.|..+.+++++ ..+|+..|+++|.+...+ ..+.+.+.+...+ .++|+|+|.++ ..+....
T Consensus 12 ~~~~l~iGrl~~~K~~~~~i~a~----~~l~~~~l~ivg~~~~~~-~~~~~~~~~~~~~--~~~v~~~g~~~-~~~~~~~ 83 (166)
T d2f9fa1 12 GDFWLSVNRIYPEKRIELQLEVF----KKLQDEKLYIVGWFSKGD-HAERYARKIMKIA--PDNVKFLGSVS-EEELIDL 83 (166)
T ss_dssp CSCEEEECCSSGGGTHHHHHHHH----HHCTTSCEEEEBCCCTTS-THHHHHHHHHHHS--CTTEEEEESCC-HHHHHHH
T ss_pred CCEEEEEecCccccCHHHHHHHH----HHhcCCeEEEEEeccccc-chhhhhhhhcccc--cCcEEEeeccc-ccccccc
Confidence 44443332224478777777665 456899999987654332 3345555666554 37999999987 6889999
Q ss_pred cccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCccc-ccCCHHHHHHHHHHHhcCHHH
Q 002273 760 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHL-IAKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 760 ~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~-v~~~~~~y~~~a~~l~~d~~~ 834 (944)
|+.+|+++-|..+ +.+.+.+|||++|+|||+ ++.++. ++.. +-..+ +..|.+++++....+..|++.
T Consensus 84 ~~~ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~-------s~~~~~~e~i~~-~~~g~~~~~d~~~~~~~i~~l~~~~~~ 154 (166)
T d2f9fa1 84 YSRCKGLLCTAKDEDFGLTPIEAMASGKPVIA-------VNEGGFKETVIN-EKTGYLVNADVNEIIDAMKKVSKNPDK 154 (166)
T ss_dssp HHHCSEEEECCSSCCSCHHHHHHHHTTCCEEE-------ESSHHHHHHCCB-TTTEEEECSCHHHHHHHHHHHHHCTTT
T ss_pred ccccccccccccccccccccccccccccccee-------ecCCcceeeecC-CcccccCCCCHHHHHHHHHHHHhCHHH
Confidence 9999999999877 668899999999999999 555421 1111 22223 346899999999999999853
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.79 E-value=3.3e-09 Score=107.90 Aligned_cols=134 Identities=9% Similarity=-0.040 Sum_probs=113.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410 (944)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (944)
.-.+..|++++|+..|+++++.+|++..++..++.++...|++++|++.|+++++++|++...+..++.++...+..+++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999988877777666
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 411 AEMIEKAIA-ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 411 ~~~l~~al~-~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
...+.+... ..|.....+...+.++...|++++|.+.++++.+..|+.+..+.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 554443322 245556777888999999999999999999999999998876654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.68 E-value=1.6e-08 Score=102.80 Aligned_cols=131 Identities=10% Similarity=-0.063 Sum_probs=96.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
++.++..|++++|+..|+++++.+|++..++..++.+++..|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 56678889999999999999999999999999999999999999999999999999999999888888888776666555
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
+...+.+..... .+.. ...+...+..+...|++++|+..++++.+..|..+
T Consensus 83 a~~~~~~~~~~~--~p~~----~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLG--ENEE----LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCC--SCHH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhccc--CchH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 444333222111 1111 11234455566666777777777777777766543
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=3.7e-07 Score=100.58 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=121.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc----eEEEecCCCCCH-----HHHH-------HHHHHHHHcCCCC
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNS----RLVVKCKPFCCD-----SVRH-------RFLSTLEQLGLES 741 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~----~l~~~~~~~~~~-----~~~~-------~~~~~~~~~gi~~ 741 (944)
.|..++.++.|+ .|..+..+++|.++|+..|+. +|++++.+...+ ..+. ++...+...|+ .
T Consensus 252 ~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~-~ 330 (456)
T d1uqta_ 252 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGW-T 330 (456)
T ss_dssp TTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTB-C
T ss_pred CCCeEEEEeCCCchhhchHHHHHHHHHHHHhCccccccEEEEEEcCCcccchHHHHHHHHHHHHHHHHHHhhhccCCC-C
Confidence 355667777766 899999999999999999974 455555443221 1122 23333334566 3
Q ss_pred CcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc-----EEecCCCcccccchhHHHhhcCCcccc-
Q 002273 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP-----CVTMAGSVHAHNVGVSLLTKVGLKHLI- 814 (944)
Q Consensus 742 ~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP-----vvt~~g~~~~~r~~~~~l~~~gl~~~v- 814 (944)
..+.+.+..+ ..+..+.|+.+||+|-|+-+ +-|.+++|||+||+| ||. |+++ |+++.+
T Consensus 331 ~~v~~~~~~~-~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIl-------S~~~-------G~~~~l~ 395 (456)
T d1uqta_ 331 PLYYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFA-------GAANELT 395 (456)
T ss_dssp SEEEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTB-------GGGGTCT
T ss_pred ceeeccCCcC-HHHHhHHHhhhceeecCCccCCCCcHHHHHHHhCCCCCCCcEEE-------eCCC-------CCHHHhC
Confidence 5667777665 78999999999999988766 779999999999999 665 7766 444333
Q ss_pred ------cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 815 ------AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 815 ------~~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
..|.++..+...++.+ ++++++++.+++++.+.+ +|...|++.+-+.+++
T Consensus 396 ~g~lVnP~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~---~~~~~W~~~fl~~l~~ 452 (456)
T d1uqta_ 396 SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQ 452 (456)
T ss_dssp TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH
T ss_pred CeEEECcCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHh
Confidence 2499999999988777 566777777888888864 5777777776555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.56 E-value=3.5e-07 Score=86.77 Aligned_cols=118 Identities=14% Similarity=-0.010 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
.+.+...|......|++++|+..|.+++.+.+......... +. -.......+.+....++..++.++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999999998877653211110 11 1112222333445678899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
..|++++|+.+++++++.+|.+..+|..++.+|...|++.+|++.|+++.
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999983
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.56 E-value=3.2e-07 Score=87.04 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (944)
...+...|......|++++|+..|.+++.+.+........ .+.+ .......+.+....++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~--------------~~~w-----~~~~r~~l~~~~~~a~~ 71 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR--------------DFQF-----VEPFATALVEDKVLAHT 71 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT--------------TSTT-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc--------------chHH-----HHHHHHHHHHHHHHHHH
Confidence 3456677777778888888888888888777654322100 0011 11111222333456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
.++.++...|++++|+.+++++++.+|.+..+|..++.++...|++.+|+..|+++.+
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999988888743
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.95 E-value=5.5e-05 Score=67.33 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSIS 442 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~----~g~~~ 442 (944)
.+.++|+++|+++.+. +++.+.+.+|.+|.. ..++++|+++|+++.+. .++.+.+.||.+|.. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence 4555666666655543 445556666666554 34556666666666554 345566666666655 34566
Q ss_pred HHHHHHHHHHhh
Q 002273 443 LAIDAYEQCLKI 454 (944)
Q Consensus 443 eA~~~~~~al~l 454 (944)
+|+.+|+++.+.
T Consensus 113 ~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 113 QAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.89 E-value=3.4e-05 Score=65.91 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 391 SQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~-~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.++.+++|+++.+..+ .++|+.++++++..+|.+. +.++.||..|.++|++++|..+++++|+++|++..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 6677888888876543 4578888888888877654 78888888888888888888888888888888877754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.82 E-value=0.00014 Score=64.66 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVE 378 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 378 (944)
.|+++|+.+|+++.+.. ++.+.+.++. ....++++|+.+|+++.+. .++.+.+.+|.+|.. ..++++|++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 46799999999998875 4455666654 3456899999999999875 578999999999986 568999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p 422 (944)
+|+++.+. .++.+.+.||.+|.. ..++++|+++|+++.+...
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999875 578999999999987 5689999999999988753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.79 E-value=0.00011 Score=62.77 Aligned_cols=77 Identities=8% Similarity=-0.037 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 432 (944)
Q Consensus 357 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la 432 (944)
.+..+++|.++.+.. +.++|+.+++++++.+|.+. +.++.+|..|.++|+|++|..+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 455555665555443 34566666666666666543 56667777777777777777777777777776666554443
Q ss_pred H
Q 002273 433 V 433 (944)
Q Consensus 433 ~ 433 (944)
.
T Consensus 115 ~ 115 (124)
T d2pqrb1 115 M 115 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.042 Score=59.08 Aligned_cols=333 Identities=10% Similarity=-0.066 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH---HH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC---GI 124 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~ 124 (944)
-...+..|...+.+|++.++..+..++ +..|=- .|...-......++.. ...+...++.+|+.+...... -.
T Consensus 6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~--pYl~~~~l~~~~~~~~--~~~i~~Fl~~~p~~P~~~~lr~~~l~ 80 (450)
T d1qsaa1 6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLY--PYLEYRQITDDLMNQP--AVTVTNFVRANPTLPPARTLQSRFVN 80 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTH--HHHHHHHHHHTGGGCC--HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCH--HHHHHHHHHhccccCC--HHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 356677788888888888777776664 333421 2222211111112111 122445566677776543222 23
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
.+.+.+++.+-+..+ ...|.+... -+..+.+....|+..+|...+..+.......+.....
T Consensus 81 ~L~~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~-------- 141 (450)
T d1qsaa1 81 ELARREDWRGLLAFS----PEKPGTTEA-------QCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDK-------- 141 (450)
T ss_dssp HHHHTTCHHHHHHHC----CSCCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHH--------
T ss_pred HHHhccCHHHHHHhc----cCCCCCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHH--------
Confidence 344555554433222 123333222 2334455556677777766665555443333322222
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
++....+...-..+.+..........|++..|...+.. -|.... .++.....+...
T Consensus 142 --------l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~----l~~~~~---~~~~a~~~l~~~--------- 197 (450)
T d1qsaa1 142 --------LFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPADYQ---TIASAIISLANN--------- 197 (450)
T ss_dssp --------HHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCGGGH---HHHHHHHHHHHC---------
T ss_pred --------HHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh----CChhHH---HHHHHHHHHHhC---------
Confidence 22222222233455555666666777777776665432 222111 111111111110
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD--AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
. ... .......+.+.. .....+..-....+.+.|...+.......+.....+..
T Consensus 198 -----------------p---~~~----~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~ 253 (450)
T d1qsaa1 198 -----------------P---NTV----LTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQE 253 (450)
T ss_dssp -----------------G---GGH----HHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred -----------------h---HhH----HHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHH
Confidence 0 000 111122232222 12233333444567888888888877766555444433
Q ss_pred HHHH----HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 363 LGVI----YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 363 la~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
.... +...+..+.|...+........+.......++ .....+++..+...+...-..........|.+|+.+...
T Consensus 254 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~ 332 (450)
T d1qsaa1 254 LRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER 332 (450)
T ss_dssp HHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHc
Confidence 3332 23456678888888777665544443333344 455678999998888765433334578899999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 002273 439 GSISLAIDAYEQCLK 453 (944)
Q Consensus 439 g~~~eA~~~~~~al~ 453 (944)
|+.++|..+|..+..
T Consensus 333 G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 333 GREAEAKEILHQLMQ 347 (450)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHhc
Confidence 999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.15 Score=54.39 Aligned_cols=337 Identities=10% Similarity=-0.126 Sum_probs=171.9
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002273 71 YEIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (944)
Q Consensus 71 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 147 (944)
+...++.+|+.+...... -..+.+.+++++.+..+ ...|.+....+.++.+....|+..+|...+..+.....
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 456677899987654333 33455667776544333 35678888888999999999999999999888877655
Q ss_pred CChhHHhHHHHHH-----------HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 148 SYKPAAECLAIVL-----------TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (944)
Q Consensus 148 ~~~~~~~~la~~~-----------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (944)
..+.....+-..+ ..........|++..|...+.. +.++.......+..+...- ... ..
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~---l~~~~~~~~~a~~~l~~~p---~~~----~~ 203 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ---MPADYQTIASAIISLANNP---NTV----LT 203 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT---CCGGGHHHHHHHHHHHHCG---GGH----HH
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh---CChhHHHHHHHHHHHHhCh---HhH----HH
Confidence 5544322111111 1122233334444444433321 1111111111111111111 111 11
Q ss_pred HHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCch
Q 002273 217 AALERPMYAEA--YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294 (944)
Q Consensus 217 al~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (944)
.....+.+... ....+..-....+.+.|...+.......+.....+......+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~---------------------- 261 (450)
T d1qsaa1 204 FARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWR---------------------- 261 (450)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------------
T ss_pred HHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHH----------------------
Confidence 11122222221 222333333445677777777776655554443333222222111
Q ss_pred hHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 002273 295 FFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 374 (944)
Q Consensus 295 ~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 374 (944)
....+..+.+...+........+..... .++......+++..+...+..+-......+...+-+|..+...|+.+
T Consensus 262 ----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~ 336 (450)
T d1qsaa1 262 ----LMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (450)
T ss_dssp ----SCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHcCchHHHHHHHHhhcccccchHHHH-HHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChh
Confidence 1223344555555555544433322222 22223444566666666665443322333566666777777777777
Q ss_pred HHHHHHHHHHhhCCC--------------------------C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 375 KAVECYQMALSIKPN--------------------------F---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 375 ~A~~~~~~al~~~p~--------------------------~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
+|...|..+... ++ . ...-...+..+...|+...|...+..++.. .+.
T Consensus 337 ~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~ 413 (450)
T d1qsaa1 337 EAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSK 413 (450)
T ss_dssp HHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCH
T ss_pred hHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCH
Confidence 777777766542 11 0 012234456666777777777777666543 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
.-...++.+..+.|.++.|+....++
T Consensus 414 ~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 414 TEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 55666677777777777777666555
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.14 E-value=0.0026 Score=67.58 Aligned_cols=158 Identities=7% Similarity=-0.057 Sum_probs=97.9
Q ss_pred CCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
..++|.++.......+ .+.+.....+...|...++..+.... ..+-.+++|.+.++++ ..+.
T Consensus 237 ~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~p-~~~l--- 299 (401)
T d1rrva_ 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-------------VLPDDRDDCFAIDEVN-FQAL--- 299 (401)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-------------CCSCCCTTEEEESSCC-HHHH---
T ss_pred CCeEEEECCccccCCHHHHHHHHHHHHhhcCCeEEEecccccc-------------ccccCCCCEEEEeccC-cHHH---
Confidence 3466777776655443 56677777788887776666542210 1112268999999986 4444
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~ 836 (944)
+..+|+++ ..+|.+|++|||++|||+|.+|-.. -...-+..+...|..-.+.. |+++..+...++. |++.++
T Consensus 300 l~~~~~~I---~hgG~~t~~Eal~~GvP~l~~P~~~-DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl-~~~~r~ 374 (401)
T d1rrva_ 300 FRRVAAVI---HHGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVL-APETRA 374 (401)
T ss_dssp GGGSSEEE---ECCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHT-SHHHHH
T ss_pred hhhccEEE---ecCCchHHHHHHHhCCCEEEecccc-cHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHh-CHHHHH
Confidence 45699998 3688899999999999999988432 13334566777788755533 5777777777776 554433
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
+.+ ++++++.. -...+-++.+|+.
T Consensus 375 ~a~-~~~~~~~~---~g~~~aa~~ie~~ 398 (401)
T d1rrva_ 375 RAE-AVAGMVLT---DGAAAAADLVLAA 398 (401)
T ss_dssp HHH-HHTTTCCC---CHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhh---cCHHHHHHHHHHH
Confidence 322 23333211 1344555555554
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=97.08 E-value=0.0025 Score=69.09 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=96.5
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+...++|.++.......++.++.....+...+.-++|....... ......... .+ +++|.+..+.+ +. .+-
T Consensus 263 ~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~-~~l~~~~~~-----~~-~~nv~~~~~~p-q~-~lL 333 (450)
T d2c1xa1 263 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR-VHLPEGFLE-----KT-RGYGMVVPWAP-QA-EVL 333 (450)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG-GGSCTTHHH-----HH-TTTEEEESCCC-HH-HHH
T ss_pred CccceeeecccccccCCHHHHHHHHHHHHhcCCeEEEEECCCcc-ccCChhhhh-----hc-cccccccccCC-hH-hhh
Confidence 45668899999888889998888888888887777776532210 011011111 11 67899888886 33 444
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH-hhcCCcccc---cCCHHHHHHHHHHHhcCHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI---AKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~gl~~~v---~~~~~~y~~~a~~l~~d~~~ 834 (944)
....+|+|+ ..+|..|+.||++.|||+|++|--.= ....+.-+ +..|+.--+ .-|.++..+...++.+|+..
T Consensus 334 ~hp~~~~fI---tHGG~~s~~eal~~GvP~v~~P~~~D-Q~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d~~y 409 (450)
T d2c1xa1 334 AHEAVGAFV---THCGWNSLWESVAGGVPLICRPFFGD-QRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKG 409 (450)
T ss_dssp TSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHH
T ss_pred ccCceeEEE---ccCCccHHHHHHHcCCCEEecccccc-hHHHHHHHHHHcCcEEEecCCCcCHHHHHHHHHHHhcCcHH
Confidence 467788888 24778899999999999999984221 11123333 446776544 34789999999999999853
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.08 E-value=0.1 Score=53.04 Aligned_cols=281 Identities=15% Similarity=0.132 Sum_probs=150.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
.-..|..+.+.|.|+.|...|... .+ +..+..++...++++.|.+.+.+. ++...|..+.
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~----~d-----------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~ 76 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNV----SN-----------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVC 76 (336)
T ss_dssp ------------CTTTHHHHHHHT----TC-----------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC----CC-----------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHH
Confidence 345677777888888888888643 11 333445556678888888877665 4577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
..+.+..+...|.-+ .. ..-.+++-...+...|...|.+++.+.+++.++...+.+...+..++.++.+.+.....
T Consensus 77 ~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~ 152 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 152 (336)
T ss_dssp HHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHH
Confidence 888777766543221 10 11234555566777888889999999999988887778887777888777665433211
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (944)
+-+... ...=+..+++..+++. ..|..+..+|.+.|++++|+..+-.- |.+..
T Consensus 153 e~l~~~---------------s~~y~~~k~~~~c~~~--------~l~~elv~Ly~~~~~~~~A~~~~i~~----~~~~~ 205 (336)
T d1b89a_ 153 EHLELF---------------WSRVNIPKVLRAAEQA--------HLWAELVFLYDKYEEYDNAIITMMNH----PTDAW 205 (336)
T ss_dssp HHHHHH---------------STTSCHHHHHHHHHTT--------TCHHHHHHHHHHTTCHHHHHHHHHHS----TTTTC
T ss_pred HHHHhc---------------cccCCHHHHHHHHHHc--------CChHHHHHHHHhcCCHHHHHHHHHHc----chhhh
Confidence 111110 0112334444443321 22445666777778888776554331 11111
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS----------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
-....-.++.+..+.+..-+...-.++.+|....- ...+.....+.++..-...+++.... .++..+.
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn 283 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVN 283 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHH
T ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHH
Confidence 11112222333344333333333333334332211 12233344556666666667766443 3346788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
..++.+|...++++. .++.++..-
T Consensus 284 ~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 284 ESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp HHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred HHHHHHHhCcchhHH----HHHHHHHhc
Confidence 889999999999644 455554443
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=97.03 E-value=0.0023 Score=69.82 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=96.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC---HHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC---DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
....++|.++.......++.......+++..+.-.+|..+..... ......+... .+++|.+..+.| +.+
T Consensus 286 ~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~Nv~~~~~~P-q~~ 358 (473)
T d2pq6a1 286 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE------IADRGLIASWCP-QDK 358 (473)
T ss_dssp CTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHH------HTTTEEEESCCC-HHH
T ss_pred CCCceeeeccCccccccHHHHHHHHHHHHhcCCeEEEEEccCCcccccccCcccchhh------ccCceEEeeeCC-HHH
Confidence 445678889999999999999999999999999888876432111 0011111111 157899988876 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcC
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASD 831 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d 831 (944)
+-....|++|+ ..+|..|+.||++.|||+|.+| ++.+. .+.-+-+.+|+.-.+ .-|.++..+...++..|
T Consensus 359 -lL~hp~~~~fI---tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~--na~rv~~~~G~G~~l~~~~t~~~l~~ai~~vl~d 432 (473)
T d2pq6a1 359 -VLNHPSIGGFL---THCGWNSTTESICAGVPMLCWPFFADQPT--DCRFICNEWEIGMEIDTNVKREELAKLINEVIAG 432 (473)
T ss_dssp -HHTSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHH--HHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTS
T ss_pred -HhcCCcCcEEE---ecCCccHHHHHHHcCCCEEeccchhhhHH--HHHHHHHHcCeEEeeCCCcCHHHHHHHHHHHHcC
Confidence 43446788888 2477889999999999999988 44432 111122344553222 23789999999999999
Q ss_pred HH
Q 002273 832 VT 833 (944)
Q Consensus 832 ~~ 833 (944)
+.
T Consensus 433 ~~ 434 (473)
T d2pq6a1 433 DK 434 (473)
T ss_dssp HH
T ss_pred Ch
Confidence 85
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.01 E-value=0.0028 Score=67.24 Aligned_cols=132 Identities=9% Similarity=0.019 Sum_probs=86.6
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 682 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
.+++.++.... .....++...+.+...|.-.+|..+.... .... .+++|++.++.+ +. ..+.
T Consensus 239 ~~i~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~------------~~~~-~~~nv~~~~~~p-~~---~~l~ 300 (401)
T d1iira_ 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL------------VLPD-DGADCFAIGEVN-HQ---VLFG 300 (401)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC------------CCSS-CGGGEEECSSCC-HH---HHGG
T ss_pred CeEEEccCccc-cchHHHHHHHHHHHHcCCeEEEeccCCcc------------cccc-CCCCEEEEeccC-HH---HHHh
Confidence 35566665543 46677777778888887666665543210 1112 267899999976 33 4456
Q ss_pred cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 002273 762 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 762 ~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~ 836 (944)
.+|+++ ..+|++|++|||+.|||+|.+|-.. =....+..+...|..-.+.. |.++..+...++.+ ++.++
T Consensus 301 ~~~~~V---~hgG~~t~~Eal~~GvP~v~~P~~~-DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~-~~~~~ 373 (401)
T d1iira_ 301 RVAAVI---HHGGAGTTHVAARAGAPQILLPQMA-DQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALT-PETHA 373 (401)
T ss_dssp GSSEEE---ECCCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHH
T ss_pred hcCEEE---ecCCchHHHHHHHhCCCEEEccccc-cHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhC-HHHHH
Confidence 699998 3588899999999999999987321 13344566778888665533 67888888888875 44433
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=96.98 E-value=0.0031 Score=66.75 Aligned_cols=131 Identities=7% Similarity=0.025 Sum_probs=87.1
Q ss_pred CCeEEEecCCCCcCC-HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLAKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
..+++.++....... ..........+...+...++..+... ...+-.+++|.+.++++ ..+ .
T Consensus 221 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~i~~~~p-~~~---l 283 (391)
T d1pn3a_ 221 STPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWAD-------------LVLPDDGADCFVVGEVN-LQE---L 283 (391)
T ss_dssp SCCEEEECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTTT-------------CCCSSCCTTCCEESSCC-HHH---H
T ss_pred CCeEEEeccccccccHHHHHHHHHHHHHhcCCEEEEeccccc-------------cccccCCCCEEEecccC-HHH---H
Confidence 345667776554443 45666677777777765555443211 01122368899999976 344 4
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCc-ccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcC
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSV-HAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASD 831 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~-~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d 831 (944)
+..+|+++ ..+|.+|++|||++|||+|.+| ++. ...+.-|..+...|+.-.+. -|.++..+...++.+|
T Consensus 284 l~~a~~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~ 358 (391)
T d1pn3a_ 284 FGRVAAAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAP 358 (391)
T ss_dssp HTTSSCEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTST
T ss_pred HhhccEEE---ecCchHHHHHHHHhCCcEEEeccccCCcchHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhCH
Confidence 56789988 2388899999999999999987 332 22455567777888876553 3578888888888865
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0056 Score=63.62 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-C
Q 002273 695 TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-A 773 (944)
Q Consensus 695 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~ 773 (944)
...+.+.+.+.+...+.....+...+... ........... . ..++...+... +....+..||+++ . +
T Consensus 189 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~~~~~~~--~-~~~~~v~~f~~---~~~~lm~~adl~I----t~~ 256 (351)
T d1f0ka_ 189 ARILNQTMPQVAAKLGDSVTIWHQSGKGS--QQSVEQAYAEA--G-QPQHKVTEFID---DMAAAYAWADVVV----CRS 256 (351)
T ss_dssp CHHHHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHHT--T-CTTSEEESCCS---CHHHHHHHCSEEE----ECC
T ss_pred hhhhHHHHHHhhhhhcccceeeeeccccc--hhhhhhhhccc--c-cccceeeeehh---hHHHHHHhCchhh----ccc
Confidence 34445555566666555555554333211 22222222222 2 34555556543 3455668899998 5 6
Q ss_pred CcccHHHhhhcCCcEEecC-CCc-ccccchhHHHhhcCCcccccCCH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 002273 774 GTTTTCESLYMGVPCVTMA-GSV-HAHNVGVSLLTKVGLKHLIAKNE--DEYVQLALQLASDVTALANLRMSLRDLMSKS 849 (944)
Q Consensus 774 ~~~t~~eal~~gvPvvt~~-g~~-~~~r~~~~~l~~~gl~~~v~~~~--~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~ 849 (944)
|++|+.|++.+|+|+|..| ... .....-|-.|...|+.-.+-.+. .+-+..++... |++.+.++++++++.. .
T Consensus 257 G~~T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~~~~~~~~~~e~l~~~l~~l-~~~~~~~~~~~~~~~~--~ 333 (351)
T d1f0ka_ 257 GALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW-SRETLLTMAERARAAS--I 333 (351)
T ss_dssp CHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC-CHHHHHHHHHHHHHTC--C
T ss_pred cchHHHHHHHhCCceeeeecccCCchHHHHHHHHHHCCCEEEechhhCCHHHHHHHHHhh-CHHHHHHHHHHHHccC--C
Confidence 6799999999999999876 211 12334577899999886664322 23334444332 7788888888887541 1
Q ss_pred CCCChHHHHHHHHHHH
Q 002273 850 PVCDGQNFALGLESTY 865 (944)
Q Consensus 850 ~~~~~~~~~~~~e~~~ 865 (944)
+ -..++.++.+|++-
T Consensus 334 ~-~~a~~i~~~i~~l~ 348 (351)
T d1f0ka_ 334 P-DATERVANEVSRVA 348 (351)
T ss_dssp T-THHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHH
Confidence 1 12566777766654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.34 E-value=0.34 Score=48.92 Aligned_cols=141 Identities=14% Similarity=0.055 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
..-..|..+.+.|.|+.|..+|... + -+-.+..++...++++.|.+.+.++ ++...|..+...+.+.
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~-----~---d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV-----S---NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp -------------CTTTHHHHHHHT-----T---CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhC-----C---CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence 4455677888889999999888754 1 1345557778888999988887765 4677888888888777
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (944)
.+..-|... ...+. .+++. +......+...|.+++.+.+++..+...+.+...+..++.+|.+.+ .++
T Consensus 83 ~e~~la~i~-~~~~~---~~~d~-------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 83 KEFRLAQMC-GLHIV---VHADE-------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp TCHHHHHHT-TTTTT---TCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHH
T ss_pred cHHHHHHHH-HHHhh---cCHHH-------HHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHH
Confidence 666543211 11011 11111 2334455667788888888888888777778888888888776653 344
Q ss_pred HHHHHH
Q 002273 210 ALGCYE 215 (944)
Q Consensus 210 A~~~~~ 215 (944)
-++.++
T Consensus 151 l~e~l~ 156 (336)
T d1b89a_ 151 MREHLE 156 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=96.12 E-value=0.0073 Score=65.31 Aligned_cols=141 Identities=13% Similarity=0.019 Sum_probs=87.0
Q ss_pred CCeEEEec-CCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 681 GFITFGSF-NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~-~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
+.+++.++ .......++.+......+...+--.+|....... .+...+.. ..++++.+....+ ..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~n~~v~~~~p--q~~~ 343 (461)
T d2acva1 274 KSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWM--------ELEGKGMICGWAP--QVEV 343 (461)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHH--------HHHCSEEEESSCC--HHHH
T ss_pred cceeeeeccccccCCCHHHHHHHHHHHHhcCccEEEEeecccccCCccchhhh--------ccCCCeEEEecCC--HHHH
Confidence 34444444 4556677888888888888777666666533211 11111111 1146677766654 5667
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcccc---------cCCHHHHHHHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLI---------AKNEDEYVQLAL 826 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v---------~~~~~~y~~~a~ 826 (944)
..+..||+|+ ..+|..|+.||++.|||+|++| ++.+. .+.-+-+.+|+.-.+ .-|.++..+...
T Consensus 344 l~~p~~~~fI---tHGG~gs~~eAl~~GVP~l~~P~~~DQ~~--nA~rlve~~G~G~~l~~~~~~~~~~~t~~~l~~a~~ 418 (461)
T d2acva1 344 LAHKAIGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQL--NAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLK 418 (461)
T ss_dssp HHSTTEEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHHH--HHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHH
T ss_pred HhcccCCEEE---ecCCccHHHHHHHcCCCEEeCCcccchHH--HHHHHHHHhCceEEeeccccccCCccCHHHHHHHHH
Confidence 7788999998 2477889999999999999988 34321 122222444554333 247888888888
Q ss_pred HHhcC-HHHHH
Q 002273 827 QLASD-VTALA 836 (944)
Q Consensus 827 ~l~~d-~~~~~ 836 (944)
++.++ ...++
T Consensus 419 ~vl~~d~~~r~ 429 (461)
T d2acva1 419 DLMDKDSIVHK 429 (461)
T ss_dssp HHTCTTCTHHH
T ss_pred HHhhCCHHHHH
Confidence 88864 43433
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.09 E-value=0.027 Score=60.70 Aligned_cols=147 Identities=15% Similarity=0.039 Sum_probs=95.0
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHH-----------HHHHHHHHHHHcCCCCCcEEEc
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS-----------VRHRFLSTLEQLGLESLRVDLL 747 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~gi~~~rv~~~ 747 (944)
..+.+++.++.......+..+......+...+...+|.......... ....+-.-+... ..+++|++.
T Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~ 339 (471)
T d2vcha1 261 PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER-TKKRGFVIP 339 (471)
T ss_dssp CTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHH-TTTTEEEEE
T ss_pred CCccccccccccccCCCHHHHHHHHHHHHhhcCCeEEEeccccccccccccccccccchhhhCCchhhhh-ccCCCeeec
Confidence 45667888888888888888888888888888888877643211100 000010011111 125789999
Q ss_pred cCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc------CCHH
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA------KNED 819 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~------~~~~ 819 (944)
+++| +.+.| .+..+|+|+ ..+|.+|+.||++.|||+|.+| |+.+. .+.-+-+.+|+.--+- -|.+
T Consensus 340 ~w~P-q~~lL-~hp~~~~fV---tHGG~gS~~EAl~~GvP~v~~P~~~DQ~~--nA~rv~e~lG~Gv~l~~~~~~~~t~~ 412 (471)
T d2vcha1 340 FWAP-QAQVL-AHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAEQKM--NAVLLSEDIRAALRPRAGDDGLVRRE 412 (471)
T ss_dssp SCCC-HHHHH-HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHH--HHHHHHHTTCCEECCCCCTTSCCCHH
T ss_pred ccCC-HHHHh-cCccCCEEE---ecCCccHHHHHHHcCCCEEEcccccccHH--HHHHHHHHheeEEEEecCCCCcCCHH
Confidence 9987 45544 346788888 2477889999999999999987 55442 2222234445543221 2778
Q ss_pred HHHHHHHHHhcCHH
Q 002273 820 EYVQLALQLASDVT 833 (944)
Q Consensus 820 ~y~~~a~~l~~d~~ 833 (944)
+-.+...++..|++
T Consensus 413 ~l~~ai~~vl~~~~ 426 (471)
T d2vcha1 413 EVARVVKGLMEGEE 426 (471)
T ss_dssp HHHHHHHHHHTSTH
T ss_pred HHHHHHHHHhCCcH
Confidence 88888888888864
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.11 Score=53.79 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=97.1
Q ss_pred CCCeEEEecCCCC--cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNLA--KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
++.+...++.+.. +.......+...+....++..+++...+ ....+....+.+.. ..++.+.+..+ +.+|+
T Consensus 194 ~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~--~~~~~~~~~~~~~~----~~n~~~~~~l~-~~~~l 266 (373)
T d1v4va_ 194 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHL--NPVVREAVFPVLKG----VRNFVLLDPLE-YGSMA 266 (373)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCS--CHHHHHHHHHHHTT----CTTEEEECCCC-HHHHH
T ss_pred cccceeEEeccccccchHHHHHHHHHHHhhhcccceeeeeecc--cccchhhhhhhhcc----cccceeeccch-HHHHH
Confidence 4455677777653 2335566777777788787777664432 23444444333322 46899988876 78999
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
..+..|++++ =++|....||.++|+|||++.-.+ .|.-+ +. .|-.-+|..|.++-....-.+..|+..+..
T Consensus 267 ~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~--eRqeg--~~-~g~nvlv~~d~~~I~~~i~~~l~~~~~~~~ 337 (373)
T d1v4va_ 267 ALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT--ERPEG--LK-AGILKLAGTDPEGVYRVVKGLLENPEELSR 337 (373)
T ss_dssp HHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC--SCHHH--HH-HTSEEECCSCHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhhhceeEe----cccchhhhcchhhcCcEEEeCCCc--cCHHH--Hh-cCeeEEcCCCHHHHHHHHHHHHcCHHHHhh
Confidence 9999999998 677888999999999999984211 33332 11 266667778888888887788888855544
Q ss_pred H
Q 002273 838 L 838 (944)
Q Consensus 838 ~ 838 (944)
+
T Consensus 338 ~ 338 (373)
T d1v4va_ 338 M 338 (373)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=93.52 E-value=0.37 Score=49.77 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=81.6
Q ss_pred CCCCeEEEecCCCCcCCH---HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNLAKITP---KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~---~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
..+..++.++.+..-... ..+.....++...++..+++-..+ ....+. .....-...++|.+.+..+ +.+
T Consensus 196 ~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~----~~~~~~~~~~ni~~~~~l~-~~~ 268 (377)
T d1o6ca_ 196 GEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL--NPVVRE----AAHKHFGDSDRVHLIEPLE-VID 268 (377)
T ss_dssp TTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC------CHHHH----HHHHC--CCSSEEECCCCC-HHH
T ss_pred cCCceEEEEeccccccccchHHHHHHHHhhccccccccccccccc--ccccch----hhhhccccccceEeccccc-hHH
Confidence 355566777776654443 333444555566666555543322 112232 2333333467899999876 799
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCC--cccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~--~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
|+.++..|++++ =++|....||-++|+|||++.-. .-.+|.. |-.-+|..+.++-++..-.+.+|+.
T Consensus 269 fl~llk~s~~vI----gnSss~i~Ea~~lg~P~Inir~~tERqe~~~~-------g~nilv~~~~~~I~~~i~~~l~~~~ 337 (377)
T d1o6ca_ 269 FHNFAAKSHFIL----TDSGGVQEEAPSLGKPVLVLRDTTERPEGVEA-------GTLKLAGTDEENIYQLAKQLLTDPD 337 (377)
T ss_dssp HHHHHHHCSEEE----EC--CHHHHGGGGTCCEEEECSCCC---CTTT-------TSSEEECSCHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhheee----cccchhHHhhhhhhceEEEeCCCCcCcchhhc-------CeeEECCCCHHHHHHHHHHHHhChH
Confidence 999999999998 66777899999999999998432 2223333 5455666677776666666777875
Q ss_pred HHHH
Q 002273 834 ALAN 837 (944)
Q Consensus 834 ~~~~ 837 (944)
....
T Consensus 338 ~~~~ 341 (377)
T d1o6ca_ 338 EYKK 341 (377)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=2.9 Score=42.55 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCCeEEEecCCCCcCCHH---HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNLAKITPK---VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~---~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.++..++.+..-.... .+.+...+.....+..+++-..+ ....+....+.+ +- ..++.+.+..+ +.+|
T Consensus 204 ~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~p~~~--~~~~~~~~~~~~---~~-~~ni~~~~~l~-~~~f 276 (376)
T d1f6da_ 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GH-VKNVILIDPQE-YLPF 276 (376)
T ss_dssp TSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHHH
T ss_pred CCceEEEecccchhhhhhHHHHHHHHhhhhhhcceeEEeccccc--chhhhhhHhhhh---cc-cccceeecccc-HHHH
Confidence 445567777766544433 33444444444445444443322 233444333332 22 46888888876 7899
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc-ccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
+.++..|++++ =+.|.-..||-++|+|||++...+ ..+|+ ..|---+|..+.++-.+...+...++.
T Consensus 277 l~ll~~a~~vi----gnSssgi~Ea~~lg~P~Inir~~ter~~~~------~~g~~i~v~~~~~~I~~ai~~~l~~~~ 344 (376)
T d1f6da_ 277 VWLMNHAWLIL----TDSGGIQEEAPSLGKPVLVMRDTTERPEAV------TAGTVRLVGTDKQRIVEEVTRLLKDEN 344 (376)
T ss_dssp HHHHHHCSEEE----ESSSGGGGTGGGGTCCEEECSSCCSCHHHH------HHTSEEECCSSHHHHHHHHHHHHHCHH
T ss_pred HHHHhhceEEE----ecCcchHhhHHHhCCCEEEcCCCccCccce------ecCeeEECCCCHHHHHHHHHHHHhChH
Confidence 99999999998 566677789999999999984421 22222 125455677788887777777777763
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.98 E-value=16 Score=33.71 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHHHHHh
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSEAVK 110 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 110 (944)
-+.++.+|.+.-+.++|++.+.+.+++++.++. +.+-...+..+|-. .|....+...+....+
T Consensus 3 re~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~ 67 (230)
T d2o02a1 3 KNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQ 67 (230)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467889999999999999999999999999887 55666666666542 3555666666655433
|