Citrus Sinensis ID: 002283

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940---
MNNGEGTRGEVSEVASPESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
ccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEEEEcccEEEEEcccHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHcccccccccccccccccHHHHHHHHccccccEEEEEcccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccHHHHEccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccEEcccccccEEEccccccccEEcccccccccccccccccEEEccccccEEEccccccccccEEccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEcccccccccEEEcccEEcccccHHHHHHHccccEEcccHHHHcccccccccccccEEEEEEEEEEEcccccccccccccccccEEEEEccccHHHHHHHccccEccccccccccccccEEEccccHHHHccccccHHHHHcccccccccccccccccccccccEEEEccccccccHHHHHHcccccccccHHHcccccccccccccccccccccccHHccccccEcccccccccHHHHHcccccccEccccccccccccccccEEcccccccccccHccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcHHccccccccccHHHHHHcccEcccccccccccccccEEEEEEcccccHHHHHHHcccEcccccccccccccccHHHHHHcccccccEHHccccEEcccccccccEEccHHHHEccccccccHHHHHHHHHHHHHccccEcHHHHcHHHHHHHHHHHHEEEcc
mnngegtrgevsevaspesyggdvspaslshysscgeseferycsansvmgtpsvrssfgndcvdsefalkslgfgddlsfenfslggkqklsilgdrriefregrndkdlemesgvsglhcdgdsnfnnsnegrinhhvdmqmngseimieGGERTLVGsvvgnswdietraeegssfgvyneekghcsdgfdgngmegeedgtslryehsededsmynygsdeehrgklyyprnvgrvqeakgenenplfinshvafgsndwddfeqevggstsslTLEKVHEKREPIIESGKNLLIFTskstigfpsggqkeqgndatdesvvsekvrgadeceeninrltatpvgapssaeqenleeekdISVASYQVqggdlltenisnlpqtpiglprfshppqdvRDIFVTCnqlngtdlseesnrvssptpsnlpkfyspdryvrnvagstqvrgaydlkmhhnngsasdffeveheplvdmaplkIGLDIVdsgmerkhqnlnnkevstndsgifdnqefgyftepvadfsvdqlcsdsigypgelsVEFLEDresklcpsafenitnaskdspssadlvkehpaksknlelndFYDEVVHEMEEILLDysesprarlSQVNQMSQsqislplrdggstastsgtddaypltlvplRIDGVEVIgakqkkgdvslserlvgvkEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSlsadegwslpspwssvekesrkifgnvsPLVVAHRSVLIQECLQSIlhsssfssppnALITFLSQqeslrnspasnplvsgytsfakgtdaenmsALGKTISLVVEIRPHRSMKQMLESQhytcagchkhfddGITLMQDFVQtlgwgkprlceytgqlfcstchtnetavlparvlhhwdftrypvSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
mnngegtrgevsevaspesyggdvspASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENfslggkqklsilgdrriefregrndkdlemeSGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGsdeehrgklyYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKRepiiesgknllIFTSKSTIGFpsggqkeqgndatdeSVVSEKVrgadeceeninrltatpvgapsSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGtdlseesnrvssptpsnlpkfyspdryVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHqnlnnkevstndsGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFenitnaskdspssaDLVKehpaksknlelnDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTastsgtddayplTLVPLRIDGVEVIgakqkkgdvslserlvgvkeytvykirvwsgkdqweverRYRDFYTLYRRLKslsadegwslpspwssvekESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
MNNGEGTRGEVSEVASPESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHsssfssPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
******************************************YC*************SFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDR**************************************************IMIEGGERTLVGSVVGNSWDIET************************************************************YY****************PLFINSHVAFGSNDWDDF**************************GKNLLIFTS*************************************************************************DLLTE*I******************DVRDIFVTCNQL***************************RYVRNVAGSTQVRGAYDLKMHHN***ASDFFEVEHEPLVDMAPLKIGLDIVD********************GIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLE***************************************LNDFYDEVVHEMEEILLD**************************************AYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLP**W*******RKIFGNVSPLVVAHRSVLIQECLQSILH***********IT**********************************ALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILY*
*****************************************RYCSANSVMGT*S*RSSFGNDCVDSE***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YDE*****************************************************************************SERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
************************SPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPS**********************ADECEENINRLTATPVG*************KDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTD*************SNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNA*************HPAKSKNLELNDFYDEVVHEMEEILLDYSESPRAR**************************GTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
*************************************S*************T**VR*SF*N*CVDSEFALKS******LSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNS*EGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAE***SFGV************************************MYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSG*Q*******TDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKL***************PSSADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDY***********************************DDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNNGEGTRGEVSEVASPESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSSFGNDCVDSEFALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEMESGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAEEGSSFGVYNEEKGHCSDGFDGNGMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKLYYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGSTSSLTLEKVHEKREPIIESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGAPSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQDVRDIFVTCNQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDFFEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEVSTNDSGIFDNQEFGYFTEPVADFSVDQLCSDSIGYPGELSVEFLEDRESKLCPSAFENITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELILYY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query943 2.2.26 [Sep-21-2011]
Q80U62 956 Run domain Beclin-1 inter yes no 0.099 0.098 0.358 5e-14
Q92622 972 Run domain Beclin-1 inter yes no 0.099 0.096 0.358 6e-14
Q3TD16 648 Uncharacterized protein K no no 0.097 0.141 0.355 1e-12
Q6ZWE6 761 Pleckstrin homology domai no no 0.088 0.109 0.354 2e-12
Q8BM47 761 Pleckstrin homology domai no no 0.088 0.109 0.354 2e-12
Q9H714 662 Uncharacterized protein K no no 0.093 0.132 0.353 3e-12
A7E316 663 Uncharacterized protein K no no 0.093 0.132 0.333 2e-11
Q08AW4 748 Pleckstrin homology domai N/A no 0.082 0.104 0.333 1e-10
Q9Y4G2 1056 Pleckstrin homology domai no no 0.081 0.072 0.325 1e-10
Q69YJ1 520 Putative pleckstrin homol no no 0.081 0.148 0.325 3e-10
>sp|Q80U62|RUBIC_MOUSE Run domain Beclin-1 interacting and cystein-rich containing protein OS=Mus musculus GN=Kiaa0226 PE=1 SV=2 Back     alignment and function desciption
 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 12/106 (11%)

Query: 819 LVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCS 878
           ++  + P  + K  +  Q+Y CAGC      GI    D+++ L     R CEY G+ FC 
Sbjct: 684 IIFNVHPAPTRKIAVAKQNYRCAGC------GIRTDPDYIKRL-----RYCEYLGKYFCQ 732

Query: 879 TCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQ-VFEIQD 923
            CH N   V+P+R+L  WDF++Y VS  +K  L  ++N  +F +QD
Sbjct: 733 CCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQD 778
Negatively regulates endocytic trafficking. Impairs the autophagosome maturation process. May inhibit PIK3C3 activity.
Mus musculus (taxid: 10090)
>sp|Q92622|RUBIC_HUMAN Run domain Beclin-1 interacting and cystein-rich containing protein OS=Homo sapiens GN=KIAA0226 PE=1 SV=4 Back     alignment and function description
>sp|Q3TD16|K226L_MOUSE Uncharacterized protein KIAA0226-like OS=Mus musculus GN=Kiaa0226l PE=2 SV=2 Back     alignment and function description
>sp|Q6ZWE6|PKHM3_HUMAN Pleckstrin homology domain-containing family M member 3 OS=Homo sapiens GN=PLEKHM3 PE=2 SV=2 Back     alignment and function description
>sp|Q8BM47|PKHM3_MOUSE Pleckstrin homology domain-containing family M member 3 OS=Mus musculus GN=Plekhm3 PE=1 SV=1 Back     alignment and function description
>sp|Q9H714|K226L_HUMAN Uncharacterized protein KIAA0226-like OS=Homo sapiens GN=KIAA0226L PE=1 SV=3 Back     alignment and function description
>sp|A7E316|K226L_BOVIN Uncharacterized protein KIAA0226-like OS=Bos taurus GN=KIAA0226L PE=2 SV=1 Back     alignment and function description
>sp|Q08AW4|PKHM3_XENLA Pleckstrin homology domain-containing family M member 3 OS=Xenopus laevis GN=plekhm3 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y4G2|PKHM1_HUMAN Pleckstrin homology domain-containing family M member 1 OS=Homo sapiens GN=PLEKHM1 PE=1 SV=3 Back     alignment and function description
>sp|Q69YJ1|PKHMP_HUMAN Putative pleckstrin homology domain-containing family M member 1P OS=Homo sapiens GN=PLEKHM1P PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query943
224121718 1060 predicted protein [Populus trichocarpa] 0.871 0.775 0.490 0.0
359491239 1144 PREDICTED: uncharacterized protein LOC10 0.926 0.763 0.476 0.0
255540635 1061 conserved hypothetical protein [Ricinus 0.849 0.754 0.476 0.0
147841528 1333 hypothetical protein VITISV_003766 [Viti 0.898 0.635 0.462 0.0
2977337631008 unnamed protein product [Vitis vinifera] 0.785 0.735 0.475 0.0
224135827936 predicted protein [Populus trichocarpa] 0.747 0.753 0.454 0.0
356507260969 PREDICTED: uncharacterized protein LOC10 0.651 0.633 0.444 1e-139
356518963947 PREDICTED: uncharacterized protein LOC10 0.629 0.627 0.442 1e-138
20258832938 unknown protein [Arabidopsis thaliana] 0.411 0.413 0.59 1e-130
22331668938 Phox (PX) domain-containing protein [Ara 0.411 0.413 0.59 1e-130
>gi|224121718|ref|XP_002318655.1| predicted protein [Populus trichocarpa] gi|222859328|gb|EEE96875.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/935 (49%), Positives = 571/935 (61%), Gaps = 113/935 (12%)

Query: 3   NGEGTRGEVSEVASP----ESYGGDVSPASLSHYSSCGESEFERYCSANSVMGTPSVRSS 58
           +GEGT   +S    P     S GGD SP   S YSSCGESEFERYCSANSVMGTPS  SS
Sbjct: 2   DGEGTHDTISRGPDPFHSINSDGGDASP---SQYSSCGESEFERYCSANSVMGTPSYSSS 58

Query: 59  FG---NDCVDSEF-ALKSLGFGDDLSFENFSLGGKQKLSILGDRRIEFREGRNDKDLEME 114
           FG   NDC++S+  +LKSL   DD  F+             G+R +E R+  N       
Sbjct: 59  FGASFNDCIESDLGSLKSL---DDFGFD-------------GNRNLEDRKLLN------- 95

Query: 115 SGVSGLHCDGDSNFNNSNEGRINHHVDMQMNGSEIMIEGGERTLVGSVVGNSWDIETRAE 174
           S +  L    D +F  +  GR+              I G     + S +   W+IE    
Sbjct: 96  SVIDRL----DGSFEENETGRLG-------------ICGASSNELDSRI---WEIE---- 131

Query: 175 EGSSFGVYNEEKGHCSDGFDGN---GMEGEEDGTSLRYEHSEDEDSMYNYGSDEEHRGKL 231
           +G    V   E   C  G D     G +G +DG S RY +SED+DS+   GSD+E R  L
Sbjct: 132 KGDLGRVGCGENEDCQSGLDVEVDLGFDGGKDGGSSRYGYSEDDDSICGCGSDDEKRKNL 191

Query: 232 YYPRNVGRVQEAKGENENPLFINSHVAFGSNDWDDFEQEVGGST-SSLTLEKVHEKREPI 290
           Y+ RNV   +E K   ENPL + S VAFGS DWDDFE E GG   +SLTL+K  ++ + +
Sbjct: 192 YFRRNVLLGEEGKVGGENPLLMGSSVAFGSEDWDDFELETGGGIGASLTLDKFQQQEQGL 251

Query: 291 IESGKNLLIFTSKSTIGFPSGGQKEQGNDATDESVVSEKVRGADECEENINRLTATPVGA 350
              G         ST+  P  G  E G D T+E    E   G D+  E +N  T  P G 
Sbjct: 252 ATDGNFFSSIPVVSTVA-PVIGDAEIGEDVTEEHAGIEDSEG-DDLGEKLNSGTEIPYGV 309

Query: 351 PSSAEQENLEEEKDISVASYQVQGGDLLTENISNLPQTPIGLPRFSHPPQ-DVRDIFVTC 409
            +S   + +E+ +DISV S QVQG   L ++  +    P G P +  P Q D RDI + C
Sbjct: 310 RNSI-VDLVEDMRDISVVSCQVQGAHELAKDDKSTLIMPFGFPGYCEPQQEDARDISLNC 368

Query: 410 NQLNGTDLSEESNRVSSPTPSNLPKFYSPDRYVRNVAGSTQVRGAYDLKMHHNNGSASDF 469
           NQ  G++                                       D    + +   SDF
Sbjct: 369 NQAQGSN---------------------------------------DTTELYKSCPVSDF 389

Query: 470 FEVEHEPLVDMAPLKIGLDIVDSGMERKHQNLNNKEV-STNDSGIFDNQEFGYF---TEP 525
           FEVE EPLV++ P+ +GL+  D  ME  +  + ++EV  T+D    +N+E G F    +P
Sbjct: 390 FEVEQEPLVEITPVGLGLNFTDPHMEGLNPCVKSEEVVCTDDKKALENEEAGNFEVEADP 449

Query: 526 VADFSVDQLCSDSIGYPGELSVE-FLEDRESKLCPSAFENITNASKDSPSSADLVKEHPA 584
           ++D + +QL   ++ Y    S E  +  + +   P    N+  AS+++P S  L ++H A
Sbjct: 450 LSD-TTNQLHFCAVEYSENASAESLVTQKLNSTLPMLENNMKKASENAPGSVILYEDHSA 508

Query: 585 --KSKNLELNDFYDEVVHEMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTS 642
             K++N EL +FYDE+V+EMEEILLD  ESP AR  Q N + QSQ+ LPLRDGGSTASTS
Sbjct: 509 VVKAENFELIEFYDEIVNEMEEILLDSGESPGARFLQGNHLFQSQLLLPLRDGGSTASTS 568

Query: 643 GTDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVER 702
           GT++AYPL   P RID VEV+GAKQKKGDVSLSERLVGVKEYT+Y IRVWSGKDQWEVER
Sbjct: 569 GTNEAYPLITHPKRIDRVEVVGAKQKKGDVSLSERLVGVKEYTMYIIRVWSGKDQWEVER 628

Query: 703 RYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSI 762
           RYRDF+TLYRRLKSL AD+GW+LPSPWSSVEKESRKIFGN SP VV+ RSVLI+ECL S 
Sbjct: 629 RYRDFHTLYRRLKSLFADQGWTLPSPWSSVEKESRKIFGNASPDVVSERSVLIKECLHST 688

Query: 763 LHSSSFSSPPNALITFLSQQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVE 822
           +HS  FSSPP+AL+ FL  Q S  +SPA+   V+      KG DA N+S LGKTISL+VE
Sbjct: 689 IHSGFFSSPPSALVWFLCPQGSFPSSPAARMPVARSIFSNKGADAGNISTLGKTISLIVE 748

Query: 823 IRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882
           I+PH+S KQMLE QHYTCAGCHKHFDDG+TLMQDFVQTLGWGKPRLCEYTGQLFCS+CHT
Sbjct: 749 IQPHKSTKQMLEVQHYTCAGCHKHFDDGMTLMQDFVQTLGWGKPRLCEYTGQLFCSSCHT 808

Query: 883 NETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQ 917
           NETAVLPARVLH+WDF +YPVS LAKS+LDS++ Q
Sbjct: 809 NETAVLPARVLHYWDFNQYPVSHLAKSYLDSIHEQ 843

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491239|ref|XP_003634247.1| PREDICTED: uncharacterized protein LOC100853506 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540635|ref|XP_002511382.1| conserved hypothetical protein [Ricinus communis] gi|223550497|gb|EEF51984.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147841528|emb|CAN75324.1| hypothetical protein VITISV_003766 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733763|emb|CBI15010.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135827|ref|XP_002322170.1| predicted protein [Populus trichocarpa] gi|222869166|gb|EEF06297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507260|ref|XP_003522387.1| PREDICTED: uncharacterized protein LOC100800081 [Glycine max] Back     alignment and taxonomy information
>gi|356518963|ref|XP_003528144.1| PREDICTED: uncharacterized protein LOC100778899 [Glycine max] Back     alignment and taxonomy information
>gi|20258832|gb|AAM13898.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22331668|ref|NP_680104.1| Phox (PX) domain-containing protein [Arabidopsis thaliana] gi|332644859|gb|AEE78380.1| Phox (PX) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query943
TAIR|locus:504955665 938 AT3G48195 [Arabidopsis thalian 0.411 0.413 0.585 7.8e-152
UNIPROTKB|E1BK05 971 KIAA0226 "Uncharacterized prot 0.099 0.096 0.358 1.3e-11
UNIPROTKB|E5GAJ0 971 KIAA0226 "Uncharacterized prot 0.099 0.096 0.367 3.5e-11
UNIPROTKB|F1SSU4282 LOC100520986 "Uncharacterized 0.088 0.294 0.343 3.6e-11
UNIPROTKB|H7C0J9 469 PLEKHM3 "Pleckstrin homology d 0.088 0.176 0.354 3.7e-10
MGI|MGI:1915160 956 1700021K19Rik "RIKEN cDNA 1700 0.099 0.098 0.358 4.3e-10
UNIPROTKB|F1NS82 942 F1NS82 "Uncharacterized protei 0.099 0.099 0.349 4.4e-10
UNIPROTKB|F1MPG9624 PLEKHM3 "Uncharacterized prote 0.088 0.133 0.354 6.3e-10
UNIPROTKB|C9J119672 PLEKHM3 "Pleckstrin homology d 0.088 0.123 0.354 7.1e-10
UNIPROTKB|Q6ZWE6 761 PLEKHM3 "Pleckstrin homology d 0.088 0.109 0.354 8.6e-10
TAIR|locus:504955665 AT3G48195 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1173 (418.0 bits), Expect = 7.8e-152, Sum P(3) = 7.8e-152
 Identities = 234/400 (58%), Positives = 290/400 (72%)

Query:   543 GELSVEFLEDRESKLCPSAFEN--ITNASKDSPSSADLVKEHPAKSKNLELNDFYDEVVH 600
             GE + E L   ++   PS+ ++  +TNASK       +    P K +N ELNDFYD+ VH
Sbjct:   365 GECTSEPLLASQNSDMPSSRDSHPVTNASK-------VTYTQP-KKENTELNDFYDDFVH 416

Query:   601 EMEEILLDYSESPRARLSQVNQMSQSQISLPLRDGGSTASTSGTDDAYPLTLVPLRIDGV 660
             +MEEILLD  ES   R S+ ++M Q Q+SLP RDGG TA+TSG DD+ P      RID V
Sbjct:   417 DMEEILLDSGESSGVRFSKNDKMFQLQLSLPNRDGGQTATTSGLDDSSPTVSQRFRIDRV 476

Query:   661 EVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSAD 720
             EV+G KQKKGDVSLSERLVGVKEYTVY IRVWSGKD+WE+ERRYRDFY+LYRRL SL AD
Sbjct:   477 EVVGVKQKKGDVSLSERLVGVKEYTVYVIRVWSGKDKWEIERRYRDFYSLYRRLTSLFAD 536

Query:   721 EGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHXXXXXXPPNALITFLS 780
             +GW+LP+PW+SVE+ESRKIFG  SP  VA R+VLIQ+CL S+L        PNAL+ FLS
Sbjct:   537 QGWTLPTPWTSVERESRKIFGT-SPNAVAERTVLIQDCLNSVLQSRFFPTLPNALLRFLS 595

Query:   781 QQESLRNSPASNPLVSGYTSFAKGTDAENMSALGKTISLVVEIRPHRSMKQMLESQHYTC 840
              Q++  NS   + +VS  T  A    A   S+ G TIS +V+IRPH+S+KQ+LE+QHY C
Sbjct:   596 PQDAYANSSGLDSIVSP-TGSAAIDAATTSSSYGNTISFIVDIRPHKSVKQLLEAQHYIC 654

Query:   841 AGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTR 900
             AGCH++FDDG TL++DFV+ LGWGKPRLCEYTG LFCS+CHTN+ AVLPA VLHHWDF R
Sbjct:   655 AGCHRYFDDGATLVRDFVKALGWGKPRLCEYTGHLFCSSCHTNDMAVLPATVLHHWDFNR 714

Query:   901 YPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELI 940
             YPVSQLAKS+LDS++ Q       V  F+S     ++ ++
Sbjct:   715 YPVSQLAKSYLDSIHEQPMLCVSAVNPFLSSKVPALNHIM 754
GO:0005737 "cytoplasm" evidence=ISM
GO:0007154 "cell communication" evidence=IEA
GO:0035091 "phosphatidylinositol binding" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=ISS
UNIPROTKB|E1BK05 KIAA0226 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E5GAJ0 KIAA0226 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSU4 LOC100520986 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H7C0J9 PLEKHM3 "Pleckstrin homology domain-containing family M member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1915160 1700021K19Rik "RIKEN cDNA 1700021K19 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NS82 F1NS82 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPG9 PLEKHM3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C9J119 PLEKHM3 "Pleckstrin homology domain-containing family M member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZWE6 PLEKHM3 "Pleckstrin homology domain-containing family M member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XII000807
hypothetical protein (1060 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query943
pfam13901 202 pfam13901, DUF4206, Domain of unknown function (DU 1e-26
cd06093106 cd06093, PX_domain, The Phox Homology domain, a ph 2e-14
pfam00787109 pfam00787, PX, PX domain 9e-14
cd06870109 cd06870, PX_CISK, The phosphoinositide binding Pho 1e-10
smart00312105 smart00312, PX, PhoX homologous domain, present in 6e-09
cd06871120 cd06871, PX_MONaKA, The phosphoinositide binding P 6e-08
cd06875116 cd06875, PX_IRAS, The phosphoinositide binding Pho 1e-07
cd06874127 cd06874, PX_KIF16B_SNX23, The phosphoinositide bin 3e-07
cd06873120 cd06873, PX_SNX13, The phosphoinositide binding Ph 6e-07
cd06880110 cd06880, PX_SNX22, The phosphoinositide binding Ph 3e-06
cd07276110 cd07276, PX_SNX16, The phosphoinositide binding Ph 5e-05
cd06872107 cd06872, PX_SNX19_like_plant, The phosphoinositide 2e-04
cd06859114 cd06859, PX_SNX1_2_like, The phosphoinositide bind 5e-04
cd07277118 cd07277, PX_RUN, The phosphoinositide binding Phox 6e-04
cd06876133 cd06876, PX_MDM1p, The phosphoinositide binding Ph 0.001
cd07300114 cd07300, PX_SNX20, The phosphoinositide binding Ph 0.001
cd07279112 cd07279, PX_SNX20_21_like, The phosphoinositide bi 0.002
>gnl|CDD|222444 pfam13901, DUF4206, Domain of unknown function (DUF4206) Back     alignment and domain information 
 Score =  108 bits (271), Expect = 1e-26
 Identities = 33/67 (49%), Positives = 51/67 (76%), Gaps = 4/67 (5%)

Query: 867 RLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQ-VFEIQD-- 923
           R C+Y+G+ +CS CH N+ +V+PAR+LH+WDFT+YPVS+ AK  L+ +Y Q +F+++D  
Sbjct: 1   RYCDYSGKYYCSGCHRNDKSVIPARILHNWDFTKYPVSRFAKRLLEQIYEQPLFDLRDLN 60

Query: 924 -CVYSFV 929
             +YS V
Sbjct: 61  PSLYSKV 67

This is a family of cysteine-rich proteins. Many members also carry a pleckstrin-homology domain, pfam00169. Length = 202
>gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module Back     alignment and domain information
>gnl|CDD|216119 pfam00787, PX, PX domain Back     alignment and domain information
>gnl|CDD|132780 cd06870, PX_CISK, The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase Back     alignment and domain information
>gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox Back     alignment and domain information
>gnl|CDD|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase Back     alignment and domain information
>gnl|CDD|132785 cd06875, PX_IRAS, The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected Back     alignment and domain information
>gnl|CDD|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 Back     alignment and domain information
>gnl|CDD|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 Back     alignment and domain information
>gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 Back     alignment and domain information
>gnl|CDD|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 Back     alignment and domain information
>gnl|CDD|132782 cd06872, PX_SNX19_like_plant, The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins Back     alignment and domain information
>gnl|CDD|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>gnl|CDD|132810 cd07277, PX_RUN, The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains Back     alignment and domain information
>gnl|CDD|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology domain of yeast MDM1p Back     alignment and domain information
>gnl|CDD|132833 cd07300, PX_SNX20, The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 Back     alignment and domain information
>gnl|CDD|132812 cd07279, PX_SNX20_21_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 943
KOG1829 580 consensus Uncharacterized conserved protein, conta 99.92
KOG1259 490 consensus Nischarin, modulator of integrin alpha5 99.91
PF13901 202 DUF4206: Domain of unknown function (DUF4206) 99.82
cd06870109 PX_CISK The phosphoinositide binding Phox Homology 99.81
cd06872107 PX_SNX19_like_plant The phosphoinositide binding P 99.8
cd06878127 PX_SNX25 The phosphoinositide binding Phox Homolog 99.79
cd06861112 PX_Vps5p The phosphoinositide binding Phox Homolog 99.78
cd06877119 PX_SNX14 The phosphoinositide binding Phox Homolog 99.78
cd07279112 PX_SNX20_21_like The phosphoinositide binding Phox 99.77
cd07276110 PX_SNX16 The phosphoinositide binding Phox Homolog 99.77
cd06875116 PX_IRAS The phosphoinositide binding Phox Homology 99.77
cd07280120 PX_YPT35 The phosphoinositide binding Phox Homolog 99.77
cd07301112 PX_SNX21 The phosphoinositide binding Phox Homolog 99.77
cd06873120 PX_SNX13 The phosphoinositide binding Phox Homolog 99.76
cd06867112 PX_SNX41_42 The phosphoinositide binding Phox Homo 99.76
cd06898113 PX_SNX10 The phosphoinositide binding Phox Homolog 99.76
cd07282124 PX_SNX2 The phosphoinositide binding Phox Homology 99.75
cd07281124 PX_SNX1 The phosphoinositide binding Phox Homology 99.75
cd07295116 PX_Grd19 The phosphoinositide binding Phox Homolog 99.75
cd07286127 PX_SNX18 The phosphoinositide binding Phox Homolog 99.75
cd06865120 PX_SNX_like The phosphoinositide binding Phox Homo 99.75
cd06860116 PX_SNX7_30_like The phosphoinositide binding Phox 99.75
cd07300114 PX_SNX20 The phosphoinositide binding Phox Homolog 99.75
cd06866105 PX_SNX8_Mvp1p_like The phosphoinositide binding Ph 99.74
cd07285126 PX_SNX9 The phosphoinositide binding Phox Homology 99.74
cd07277118 PX_RUN The phosphoinositide binding Phox Homology 99.74
cd07293123 PX_SNX3 The phosphoinositide binding Phox Homology 99.73
cd06863118 PX_Atg24p The phosphoinositide binding Phox Homolo 99.73
cd06897108 PX_SNARE The phosphoinositide binding Phox Homolog 99.73
cd06880110 PX_SNX22 The phosphoinositide binding Phox Homolog 99.73
cd06862125 PX_SNX9_18_like The phosphoinositide binding Phox 99.73
cd06894123 PX_SNX3_like The phosphoinositide binding Phox Hom 99.72
cd07283116 PX_SNX30 The phosphoinositide binding Phox Homolog 99.72
cd06893132 PX_SNX19 The phosphoinositide binding Phox Homolog 99.72
cd06871120 PX_MONaKA The phosphoinositide binding Phox Homolo 99.72
cd07284116 PX_SNX7 The phosphoinositide binding Phox Homology 99.71
cd06859114 PX_SNX1_2_like The phosphoinositide binding Phox H 99.71
cd07287118 PX_RPK118_like The phosphoinositide binding Phox H 99.71
cd06883109 PX_PI3K_C2 The phosphoinositide binding Phox Homol 99.71
cd06881117 PX_SNX15_like The phosphoinositide binding Phox Ho 99.71
cd06864129 PX_SNX4 The phosphoinositide binding Phox Homology 99.71
cd06868120 PX_HS1BP3 The phosphoinositide binding Phox Homolo 99.71
cd06882123 PX_p40phox The phosphoinositide binding Phox Homol 99.71
cd06884111 PX_PI3K_C2_68D The phosphoinositide binding Phox H 99.69
cd07288118 PX_SNX15 The phosphoinositide binding Phox Homolog 99.68
cd06876133 PX_MDM1p The phosphoinositide binding Phox Homolog 99.68
cd07294132 PX_SNX12 The phosphoinositide binding Phox Homolog 99.68
cd06874127 PX_KIF16B_SNX23 The phosphoinositide binding Phox 99.67
cd06879138 PX_UP1_plant The phosphoinositide binding Phox Hom 99.64
cd06886106 PX_SNX27 The phosphoinositide binding Phox Homolog 99.64
smart00312105 PX PhoX homologous domain, present in p47phox and 99.63
cd06869119 PX_UP2_fungi The phosphoinositide binding Phox Hom 99.61
cd06885104 PX_SNX17_31 The phosphoinositide binding Phox Homo 99.61
cd06895140 PX_PLD The phosphoinositide binding Phox Homology 99.6
cd06888119 PX_FISH The phosphoinositide binding Phox Homology 99.6
cd06093106 PX_domain The Phox Homology domain, a phosphoinosi 99.59
cd06887118 PX_p47phox The phosphoinositide binding Phox Homol 99.57
PF00787113 PX: PX domain; InterPro: IPR001683 The PX (phox) d 99.57
KOG2527144 consensus Sorting nexin SNX11 [Intracellular traff 99.54
cd07296135 PX_PLD1 The phosphoinositide binding Phox Homology 99.52
cd07290109 PX_PI3K_C2_beta The phosphoinositide binding Phox 99.51
cd07289109 PX_PI3K_C2_alpha The phosphoinositide binding Phox 99.5
cd06890112 PX_Bem1p The phosphoinositide binding Phox Homolog 99.47
cd06891140 PX_Vps17p The phosphoinositide binding Phox Homolo 99.39
KOG2528490 consensus Sorting nexin SNX9/SH3PX1 and related pr 99.31
cd06892141 PX_SNX5_like The phosphoinositide binding Phox Hom 99.23
cd07291141 PX_SNX5 The phosphoinositide binding Phox Homology 99.19
cd06889121 PX_NoxO1 The phosphoinositide binding Phox Homolog 99.16
cd07297130 PX_PLD2 The phosphoinositide binding Phox Homology 99.15
cd07292141 PX_SNX6 The phosphoinositide binding Phox Homology 99.15
KOG2273 503 consensus Membrane coat complex Retromer, subunit 99.13
cd06896101 PX_PI3K_C2_gamma The phosphoinositide binding Phox 98.85
COG5391 524 Phox homology (PX) domain protein [Intracellular t 98.42
KOG2101362 consensus Intermediate filament-like protein, sort 98.16
KOG09051639 consensus Phosphoinositide 3-kinase [Signal transd 98.11
KOG3784 407 consensus Sorting nexin protein SNX27 [General fun 97.84
cd07298115 PX_RICS The phosphoinositide binding Phox Homology 97.3
cd07278114 PX_RICS_like The phosphoinositide binding Phox Hom 97.03
cd07299113 PX_TCGAP The phosphoinositide binding Phox Homolog 96.98
KOG4773386 consensus NADPH oxidase [Energy production and con 96.28
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms] Back     alignment and domain information 
Probab=99.92  E-value=3.2e-26  Score=260.76  Aligned_cols=114  Identities=36%  Similarity=0.718  Sum_probs=108.3

Q ss_pred             CccEEEEEecCCchhhHHhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCCcccCCCceEE
Q 002283          815 KTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLH  894 (943)
Q Consensus       815 stnqLifEIspfKSLeqgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~NdtsVIPARVLh  894 (943)
                      .+.+++|+++|.+++++||++|+|+||||+++|..           ..|.++|+|+|.|+|||+.||+++.++|||||||
T Consensus       318 ~r~~~i~~~~~~~~re~gL~aQ~~~CAgC~~~i~~-----------~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~  386 (580)
T KOG1829|consen  318 PRCQIIFHIHPAIPREKGLDAQNFRCAGCGHTIGP-----------DLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLH  386 (580)
T ss_pred             chhhhhhhcccCcchhhhhhccCceecccCCCccc-----------ccccchhHhhhhhhhhCchhcccCccccccccee
Confidence            36899999999999999999999999999998841           3578899999999999999999999999999999


Q ss_pred             eecCCCCccchhHHHHHHHhhccccccccccCCcccccchhHHHh
Q 002283          895 HWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDEL  939 (943)
Q Consensus       895 nWDFS~npVSqiAks~L~~I~~qPlLnL~aINP~LY~~~~~l~EL  939 (943)
                      +|||++|+||++|++||.+|+.+|+|++..+||.||.|+..|+++
T Consensus       387 ~WDf~~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v  431 (580)
T KOG1829|consen  387 NWDFTKYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEV  431 (580)
T ss_pred             cccCcccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHH
Confidence            999999999999999999999999999999999999999999887

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF13901 DUF4206: Domain of unknown function (DUF4206) Back     alignment and domain information
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase Back     alignment and domain information
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins Back     alignment and domain information
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 Back     alignment and domain information
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p Back     alignment and domain information
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 Back     alignment and domain information
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 Back     alignment and domain information
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 Back     alignment and domain information
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected Back     alignment and domain information
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 Back     alignment and domain information
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 Back     alignment and domain information
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 Back     alignment and domain information
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 Back     alignment and domain information
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 Back     alignment and domain information
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 Back     alignment and domain information
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 Back     alignment and domain information
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 Back     alignment and domain information
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 Back     alignment and domain information
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins Back     alignment and domain information
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 Back     alignment and domain information
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p Back     alignment and domain information
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 Back     alignment and domain information
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains Back     alignment and domain information
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 Back     alignment and domain information
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein Back     alignment and domain information
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi Back     alignment and domain information
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 Back     alignment and domain information
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 Back     alignment and domain information
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins Back     alignment and domain information
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 Back     alignment and domain information
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 Back     alignment and domain information
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase Back     alignment and domain information
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 Back     alignment and domain information
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins Back     alignment and domain information
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins Back     alignment and domain information
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 Back     alignment and domain information
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 Back     alignment and domain information
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase Back     alignment and domain information
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein Back     alignment and domain information
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 Back     alignment and domain information
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p Back     alignment and domain information
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 Back     alignment and domain information
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 Back     alignment and domain information
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins Back     alignment and domain information
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 Back     alignment and domain information
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox Back     alignment and domain information
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins Back     alignment and domain information
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 Back     alignment and domain information
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D Back     alignment and domain information
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein Back     alignment and domain information
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module Back     alignment and domain information
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase Back     alignment and domain information
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] Back     alignment and domain information
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 Back     alignment and domain information
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p Back     alignment and domain information
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p Back     alignment and domain information
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 Back     alignment and domain information
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 Back     alignment and domain information
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 Back     alignment and domain information
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 Back     alignment and domain information
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] Back     alignment and domain information
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS Back     alignment and domain information
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins Back     alignment and domain information
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein Back     alignment and domain information
>KOG4773 consensus NADPH oxidase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query943
1xte_A154 Crystal Structure Of Cisk-Px Domain Length = 154 2e-04
1xtn_A120 Crystal Structure Of Cisk-Px Domain With Sulfates L 8e-04
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain Length = 154 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG 741
           K +TVYK+ V  G+ +W V RRY +F  LY  LK         +P         +++IFG
Sbjct: 23  KRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------AKRIFG 73
Query: 742 -NVSPLVVAHRSVLIQECLQSIL 763
            N  P  +  R   + E +Q+++
Sbjct: 74  DNFDPDFIKQRRAGLNEFIQNLV 96
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates Length = 120 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query943
3p0c_A130 Nischarin; structural genomics, structural genomic 2e-20
2v14_A134 Kinesin-like motor protein C20ORF23; plus-END kine 7e-19
1xte_A154 Serine/threonine-protein kinase SGK3; CISK, PX dom 1e-17
2ett_A128 Sorting nexin-22; PX domain, BC019655, SNX22_human 1e-14
1h6h_A143 Neutrophil cytosol factor 4; PX domain; HET: PIB; 2e-12
2iwl_X140 Phosphatidylinositol-4-phosphate 3-kinase C2 domai 4e-11
2ar5_A121 Phosphoinositide 3-kinase; PX domain, transferase; 8e-11
1kq6_A141 NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha 8e-11
1kmd_A117 VAM7P, vacuolar morphogenesis protein VAM7; PX dom 1e-10
2l73_A149 NADPH oxidase organizer 1; cell membrane, PX domai 6e-10
1ocs_A162 Sorting nexin GRD19; sorting protein, PX-domain, y 4e-09
2v6v_A156 BUD emergence protein 1; homotypic fusion, regulat 1e-08
2i4k_A128 Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al 5e-08
3lui_A115 Sorting nexin-17, SNX17; PX domain, endosome, phos 8e-08
2csk_A146 Sorting nexin 12; SNX12, PX domain, structural gen 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2wwe_A127 Phosphoinositide-3-kinase, class 2, gamma polypept 4e-07
3iq2_A138 Sorting nexin-7; SNX7, PHOX, protein signalling, S 7e-07
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 1e-05
4akv_A386 Sorting nexin-33; transport protein, organelle bio 5e-05
2dyb_A341 Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid 1e-04
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 Back     alignment and structure
 Score = 87.2 bits (216), Expect = 2e-20
 Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 673 SLSERLVG---VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW 729
           S+  R+VG   V  YTVY I+V  G  +W V+ RY DF+ L+ +L +    +   LP   
Sbjct: 22  SMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLP--- 78

Query: 730 SSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLS 780
                  +KI G  S  +V  R   ++  LQ +L +    +P   L  FL 
Sbjct: 79  ------PKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPR-VLAHFLH 122
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134 Back     alignment and structure
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 Back     alignment and structure
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143 Back     alignment and structure
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140 Back     alignment and structure
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121 Back     alignment and structure
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141 Back     alignment and structure
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117 Back     alignment and structure
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162 Back     alignment and structure
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156 Back     alignment and structure
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 Back     alignment and structure
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127 Back     alignment and structure
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138 Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 Back     alignment and structure
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query943
1xte_A154 Serine/threonine-protein kinase SGK3; CISK, PX dom 99.81
3p0c_A130 Nischarin; structural genomics, structural genomic 99.78
3iq2_A138 Sorting nexin-7; SNX7, PHOX, protein signalling, S 99.77
4az9_A129 Sorting nexin-24; protein transport; 1.75A {Homo s 99.76
2csk_A146 Sorting nexin 12; SNX12, PX domain, structural gen 99.76
1ocs_A162 Sorting nexin GRD19; sorting protein, PX-domain, y 99.75
2v14_A134 Kinesin-like motor protein C20ORF23; plus-END kine 99.75
2ar5_A121 Phosphoinositide 3-kinase; PX domain, transferase; 99.75
3lui_A115 Sorting nexin-17, SNX17; PX domain, endosome, phos 99.74
2i4k_A128 Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al 99.73
1h6h_A143 Neutrophil cytosol factor 4; PX domain; HET: PIB; 99.72
2ett_A128 Sorting nexin-22; PX domain, BC019655, SNX22_human 99.71
1kmd_A117 VAM7P, vacuolar morphogenesis protein VAM7; PX dom 99.71
1kq6_A141 NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha 99.69
2iwl_X140 Phosphatidylinositol-4-phosphate 3-kinase C2 domai 99.67
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 99.62
4akv_A386 Sorting nexin-33; transport protein, organelle bio 99.6
2l73_A149 NADPH oxidase organizer 1; cell membrane, PX domai 99.58
3hpc_X161 SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph 99.54
2v6v_A156 BUD emergence protein 1; homotypic fusion, regulat 99.53
2wwe_A127 Phosphoinositide-3-kinase, class 2, gamma polypept 99.38
2dyb_A341 Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid 99.36
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Back     alignment and structure
Probab=99.81  E-value=3.4e-20  Score=179.06  Aligned_cols=109  Identities=27%  Similarity=0.465  Sum_probs=93.8

Q ss_pred             cceEEEeccccccCCccccccccCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 002283          657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKES  736 (943)
Q Consensus       657 Id~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~P  736 (943)
                      |..|.|.......         .|.+.|++|.|+|+.+...|+|+|||+||.+||++|++.||...++||         +
T Consensus         7 ~~~v~I~~~~~~~---------~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP---------~   68 (154)
T 1xte_A            7 CPSVSIPSSDEHR---------EKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------A   68 (154)
T ss_dssp             CCEEEEEEEEEEE---------ETTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCC---------C
T ss_pred             CCEEEECCcEEEe---------cCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCC---------C
Confidence            4456666554332         146789999999999889999999999999999999999998767788         6


Q ss_pred             ccccC-CCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccccc
Q 002283          737 RKIFG-NVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES  784 (943)
Q Consensus       737 KKlFG-n~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~s  784 (943)
                      |++|| +++++|||+||++||.||+.|+.| +.+..+..|+.||+....
T Consensus        69 K~~~g~~~~~~~ie~Rr~~Le~yL~~l~~~-p~l~~s~~l~~FL~~~~~  116 (154)
T 1xte_A           69 KRIFGDNFDPDFIKQRRAGLNEFIQNLVRY-PELYNHPDVRAFLQMDSP  116 (154)
T ss_dssp             SCCSSCTTCHHHHHHHHHHHHHHHHHHTTC-HHHHTSHHHHHHTTTTCG
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHcC-hhhccChHHHHHhCCCCC
Confidence            99999 899999999999999999999997 567778999999998855
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Back     alignment and structure
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Back     alignment and structure
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens} Back     alignment and structure
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Back     alignment and structure
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Back     alignment and structure
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Back     alignment and structure
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Back     alignment and structure
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Back     alignment and structure
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Back     alignment and structure
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Back     alignment and structure
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Back     alignment and structure
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Back     alignment and structure
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Back     alignment and structure
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Back     alignment and structure
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A Back     alignment and structure
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Back     alignment and structure
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Back     alignment and structure
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 943
d1h6ha_143 d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo 2e-13
d1xtea_116 d.189.1.1 (A:) Serine/threonine-protein kinase Sgk 4e-13
d1kmda_117 d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces 1e-11
d1kq6a_140 d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo 3e-11
d1ocsa_132 d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast 7e-11
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: p40phox NADPH oxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 2e-13
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 680 GVKEYTVYKIRV-WSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRK 738
           G   + V+ I V   G  ++ + RRYR F+ L  +L+     +  S      ++     K
Sbjct: 33  GFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAC-TLPTLPAK 91

Query: 739 IFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES 784
           ++  V   +   R   +   ++S+L    +      +  F  Q   
Sbjct: 92  VYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 137
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 Back     information, alignment and structure
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query943
d1xtea_116 Serine/threonine-protein kinase Sgk3, Cisk {Mouse 99.75
d1ocsa_132 Sorting nexin grd19 {Baker's yeast (Saccharomyces 99.75
d1h6ha_143 p40phox NADPH oxidase {Human (Homo sapiens) [TaxId 99.69
d1kq6a_140 p47phox NADPH oxidase {Human (Homo sapiens) [TaxId 99.66
d1kmda_117 Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T 99.63
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=5.9e-19  Score=159.47  Aligned_cols=96  Identities=27%  Similarity=0.417  Sum_probs=83.0

Q ss_pred             CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHH
Q 002283          680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECL  759 (943)
Q Consensus       680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YL  759 (943)
                      +.++||+|.|+|+.++..|+|+||||||.+||++|++.|+...+++|+        ++.+++++++++|++||++||.||
T Consensus        18 ~~k~~~~Y~I~v~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~--------~~~~~~~~~~~~l~~Rr~~L~~yL   89 (116)
T d1xtea_          18 KKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPA--------KRIFGDNFDPDFIKQRRAGLNEFI   89 (116)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCC--------SCCSSCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCC--------cccccCccCHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999886655442        344556799999999999999999


Q ss_pred             HHHhccCCCCCChhhhhcccccccc
Q 002283          760 QSILHSSSFSSPPNALITFLSQQES  784 (943)
Q Consensus       760 Q~LLsh~~~ls~SevL~eFLe~~~s  784 (943)
                      +.|+++ +.+..+..|+.||+.+.+
T Consensus        90 ~~l~~~-~~l~~~~~~~~FL~~d~~  113 (116)
T d1xtea_          90 QNLVRY-PELYNHPDVRAFLQMDSP  113 (116)
T ss_dssp             HHHTTC-HHHHTSHHHHHHTTTTCG
T ss_pred             HHHHhC-HhhhcChHHHhhcCCCCC
Confidence            999996 456778899999998754
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure