Citrus Sinensis ID: 002286
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 942 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.908 | 0.729 | 0.359 | 1e-149 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.908 | 0.729 | 0.357 | 1e-148 | |
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.922 | 0.751 | 0.348 | 1e-148 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.922 | 0.741 | 0.347 | 1e-146 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.932 | 0.763 | 0.278 | 2e-96 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.902 | 0.818 | 0.245 | 6e-44 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.893 | 0.781 | 0.236 | 8e-35 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.477 | 0.430 | 0.217 | 2e-09 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.477 | 0.430 | 0.217 | 2e-09 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.477 | 0.430 | 0.217 | 2e-09 |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 331/922 (35%), Positives = 516/922 (55%), Gaps = 66/922 (7%)
Query: 2 ACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F +
Sbjct: 4 GSIEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVK 62
Query: 62 ILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119
+LE + ID Y D +++ L+ L YY + E + K++ AT Y
Sbjct: 63 LLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTM 119
Query: 120 ASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
A +I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 120 ADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDY 179
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LA
Sbjct: 180 RGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLA 239
Query: 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298
V++L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 240 VLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNT 299
Query: 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD
Sbjct: 300 EVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSS--FVLPFFGLGQMYIYRGDK 357
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFID 415
+A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+
Sbjct: 358 ENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIE 417
Query: 416 LGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 418 LAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF--- 474
Query: 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLA 532
L LD R + + H E +N VT +NLA
Sbjct: 475 ------LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLA 504
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
RL E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +
Sbjct: 505 RLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 564
Query: 593 PNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 651
P+A S++G+L L +W ++ F R + D+Y+ L+LGN + L R +
Sbjct: 565 PDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNV-WLQTLHQPTRDRE 623
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
E H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA +
Sbjct: 624 KEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA----- 678
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK+
Sbjct: 679 DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQ 738
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 831
+LL+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 739 TLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSK 798
Query: 832 ASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAA 884
+ FD T C LL A+ H A +++++ R Q +E RQ
Sbjct: 799 VGDKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKL 856
Query: 885 LAEE--ARRKAEEQKKYLLEKR 904
L E+ R + +E++K LLE+R
Sbjct: 857 LKEQEEKRLREKEEQKKLLEQR 878
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Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 330/922 (35%), Positives = 515/922 (55%), Gaps = 66/922 (7%)
Query: 2 ACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F +
Sbjct: 4 GSIEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVK 62
Query: 62 ILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119
+LE + ID Y D +++ L+ L YY + E + K++ AT Y
Sbjct: 63 LLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTM 119
Query: 120 ASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
A +I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 120 ADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDY 179
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LA
Sbjct: 180 RGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLA 239
Query: 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298
V++L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 240 VLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNT 299
Query: 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD
Sbjct: 300 EVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDK 357
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFID 415
+A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+
Sbjct: 358 ENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIE 417
Query: 416 LGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 418 LAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF--- 474
Query: 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLA 532
L LD R + + H E +N VT +NLA
Sbjct: 475 ------LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLA 504
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
RL E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +
Sbjct: 505 RLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 564
Query: 593 PNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 651
P+A S++G+L L +W ++ F R D+Y+ L+LGN + L R +
Sbjct: 565 PDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGNV-WLQTLHQPTRDRE 623
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
E H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA +
Sbjct: 624 KEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA----- 678
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK+
Sbjct: 679 DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQ 738
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 831
+LL+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 739 TLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSK 798
Query: 832 ASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAA 884
+ FD + C LL A+ H A +++++ R Q +E RQ
Sbjct: 799 VGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKL 856
Query: 885 LAEE--ARRKAEEQKKYLLEKR 904
L E+ R + +E++K LLE+R
Sbjct: 857 LKEQEEKRLREKEEQKKLLEQR 878
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Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 327/939 (34%), Positives = 517/939 (55%), Gaps = 70/939 (7%)
Query: 2 ACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F +
Sbjct: 4 GSIEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVK 62
Query: 62 ILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119
+LE + ID Y D +++ L+ L YY + E + K+E AT Y
Sbjct: 63 LLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTM 119
Query: 120 ASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
A +I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 120 ADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDY 179
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LA
Sbjct: 180 RGALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLA 239
Query: 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298
V++L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 240 VLELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNT 299
Query: 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD
Sbjct: 300 EVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFA--AASFVLPFFGLGQMYIYRGDK 357
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFID 415
+A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+
Sbjct: 358 ENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIE 417
Query: 416 LGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 418 LAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF--- 474
Query: 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLA 532
L LD R + + H E +N ++V +NLA
Sbjct: 475 ------LASLD------------------------RAKAEAEHDEHYYNSISVTTSYNLA 504
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
RL E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +
Sbjct: 505 RLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 564
Query: 593 PNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 651
P+A S++G+L L +W ++ F R + D+Y+ L+LGN + L R +
Sbjct: 565 PDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDRE 623
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
E H ++A +Y +V+ + NL+AANG G VLA KG ++D+F QV+EA +
Sbjct: 624 KEKRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA----- 678
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+
Sbjct: 679 DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQ 738
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 831
LL+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 739 ILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSK 798
Query: 832 ASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARR 891
+ FD + C LL A+ H A +++++ + E R
Sbjct: 799 VGDKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEEK-------------EMRT 843
Query: 892 KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKARIFYI 930
K E++K+ L +K E E+K LR+ EE + ++ R Y+
Sbjct: 844 KQEQEKEVLRQKLLKEQEEKHLREIEEQKKLLEQRAQYL 882
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 326/939 (34%), Positives = 515/939 (54%), Gaps = 70/939 (7%)
Query: 2 ACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F +
Sbjct: 4 GSIEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVK 62
Query: 62 ILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119
+LE + ID Y D +++ L+ L YY + E + K+E AT Y
Sbjct: 63 LLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTM 119
Query: 120 ASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
A +I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 120 ADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDY 179
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LA
Sbjct: 180 RGALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLA 239
Query: 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298
V++L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 240 VLELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNT 299
Query: 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD
Sbjct: 300 EVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFA--AASFVLPFFGLGQMYIYRGDK 357
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFID 415
+A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+
Sbjct: 358 ENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIE 417
Query: 416 LGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 418 LAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF--- 474
Query: 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLA 532
L LD R + + H E +N VT +NLA
Sbjct: 475 ------LASLD------------------------RAKAEAEHDEHYYNAISVTTTYNLA 504
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
RL E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +
Sbjct: 505 RLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 564
Query: 593 PNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPK 651
P+A S++G+L L +W ++ F R + D+Y+ L+LGN + L R +
Sbjct: 565 PDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDRE 623
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
E H ++A +Y +V+ + NLYAANG G VLA KG ++D+F QV+EA +
Sbjct: 624 KEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA----- 678
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+
Sbjct: 679 DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQ 738
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 831
LL+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 739 ILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSK 798
Query: 832 ASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARR 891
+ FD + C LL A+ H A +++++ + E R
Sbjct: 799 VGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEEK-------------ELRA 843
Query: 892 KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKARIFYI 930
K E++K+ L +K E E+KRL++ EE + ++ R Y+
Sbjct: 844 KQEQEKEILRQKLIKEQEEKRLKEIEEQKKLLEQRAQYV 882
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 260/935 (27%), Positives = 482/935 (51%), Gaps = 57/935 (6%)
Query: 4 VYIPVQNSEEE--VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++S E+ + + +LP D ++L IL+AE+A L W+ +A EY++Q +V+ F
Sbjct: 14 IAIPLKDSHEDEVIEINCSELP-DGEEVLQILEAEEAKLSYWIEVALEYYRQDRVDLFMM 72
Query: 62 ILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
ILE S EY V+ +++ L+ L Y+ G E + +K + F AT +N A
Sbjct: 73 ILESAGSRAGLEYEG-VKQDQMRALDILAAYWMTQGYREKAKDKKSDFFSKATVLFNTAD 131
Query: 122 RIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+I M+E S + L + + E A F V++ + NV L+G+A + FN+
Sbjct: 132 KIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIAFNKK 191
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA++++P NV A+
Sbjct: 192 DYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYNVSAMCG 251
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L ++ L + ++ + R++ + +AL +LANHFFF + L A
Sbjct: 252 LGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKEIERAWTLAWHAAT 311
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ K+ ++Y + R H++G ++ A YY + + N H +YGLGQ+ +
Sbjct: 312 YNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEH--TLAHYGLGQMYIHRN 369
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EKAQELLRKAAKIDP 407
+ A+ F+ V + P+N +T+K LG +Y VQL +K +++L K ++
Sbjct: 370 EIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVEN 429
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFES 466
D +A IDL +LL ++D +L+ ++ A LL P E+LNN+G ++ ++E
Sbjct: 430 DDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYEK 489
Query: 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526
A FK A L+ + T D + +L+ R + +H+ +T
Sbjct: 490 AEHHFKRA------KERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------LT 527
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+ + S + + +
Sbjct: 528 IRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQGV 587
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGNWNYFAAL 643
+ + P +++G+L ++W+ A++ F S + K D Y+ ++LGN +F L
Sbjct: 588 QFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGNV-WFEQL 646
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
N R + E ++++A ++Y + + N+YAANG G VLA K ++ ++D+F+QV+E
Sbjct: 647 LNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRE 706
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ S + DVW+N+AHV + + A++MY + ++KF D+ + YLA+ +Y A
Sbjct: 707 STS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRA 761
Query: 764 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 823
+ K++L A+ N L+F+ + ++K + L+ + T+++V + + +L+ A
Sbjct: 762 NMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSEQVTAAIDDLKFAD 821
Query: 824 RVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHREAAEREEQQNRQRQEA 879
++F ++S + + T + CK LL AK AA+ ++++ R+ E
Sbjct: 822 KIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEERRLMEK 881
Query: 880 ARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 914
+ +A + + E + K EK+KLED K LR
Sbjct: 882 QEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 243/988 (24%), Positives = 421/988 (42%), Gaps = 138/988 (13%)
Query: 4 VYIPVQNSEEE-VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+ +P+ E++ V + LP DA+++ +IL EQAP + W A EY+ +G EQ I
Sbjct: 14 IEVPLLGQEDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILI 73
Query: 63 LEEGSSPEIDEYYADVRYERIAILNA-LGVYYTYLGKIETKQRE---KEEHFILATQYYN 118
L+ G D E + ILNA + Y + + +++ ++E Y
Sbjct: 74 LKSGLETLKDS-------ESLCILNANIAAIYLSMAREAMLKKDTDLRDEQLRNVRTYLE 126
Query: 119 KASRIDMHEPSTWVGKG--QLLLA---KGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173
A+ ID + G ++LL K +E A+ F VL+ N+ LG+A + +
Sbjct: 127 AANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSGGNILGFLGKARILY 186
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN--V 231
+G Y +L+ Y+RAL +P R+GIGLC + L A A+ R QLDP+N V
Sbjct: 187 AKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLDPKNTVV 246
Query: 232 EALVALAVMDL---QANEAAGIR---KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
+ + L DL N + ++ K ++ +QRAF+ +A + L + + +
Sbjct: 247 DTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYE 306
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+L E + + + YY + R+YH G+ EKA Y + K + H +
Sbjct: 307 GCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKA-KAADDRH--LLSS 363
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAA 403
G+GQ+Q+ D SA FE++ E E L LG ++ + + KA+ LL +A
Sbjct: 364 VGIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAF 423
Query: 404 KID-----PR--DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
+ PR D+ +I L DT +L A L+ A V E+LNNI V
Sbjct: 424 NLVGSSKLPRVVDSDLYITQARLWEKEDTKKSLGFLTRALDFLESAHMSVGPELLNNIAV 483
Query: 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516
+ + G AH G+ I K K+ + DA+ + D
Sbjct: 484 LQYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLLLD------------ 517
Query: 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576
+NLAR E++ +T AS Y IL K+ ++DA +R + + N +
Sbjct: 518 ------------YNLARCEEELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNEE 565
Query: 577 LSIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630
E+ ++ L+V + LS +++ + +T R D D Y+
Sbjct: 566 TFKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTLRHWHD-----DIYS 620
Query: 631 TLSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
+ LGN A + N++ K + ++ KA + Y + I N +AA G ++LA
Sbjct: 621 LVQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDPKNAHAAQGIAIILA 679
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746
+ QF + + ++V+EA + + IN+ + F+ A+++++
Sbjct: 680 QNRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSRAIEVFETVYSSTGE 733
Query: 747 NTDAQILLYLARTHYEAEQWQ---DCKKSLLRAIHLA----PSNYTLRFDAGVAMQKFSA 799
+ +L L R + + D K +R LA P N +L F+ VA +F
Sbjct: 734 SDTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPSLLFN--VAFVQFQL 791
Query: 800 STLQKTR----RTADEVRSTVAELENAVRVFSHLSA-----------------ASNLHLH 838
L + + RT +++ + +L+ ++ F+ L + A N
Sbjct: 792 CELIRQKPENSRTVEDLNFAMQQLDASIETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKR 851
Query: 839 GFDEKKINTHVEYCKHL---LDAAKIHREAAE-----REEQQNRQRQEAARQAALAEEAR 890
E+ I +EY K + L+ A+I RE + EE +++QE RQ L EE +
Sbjct: 852 QL-ERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEKQERERQ--LQEERQ 908
Query: 891 RKAEEQKKYLLEKRKLEDEQKRLRQQEE 918
+ EE ++ ++K ++ L EE
Sbjct: 909 KMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 239/1012 (23%), Positives = 429/1012 (42%), Gaps = 170/1012 (16%)
Query: 6 IPVQNSEEEVRVALD-QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILE 64
IP++ SEE V + L+ LP D +D+ +L E + + WL IA Y GK + +++E
Sbjct: 21 IPLKASEELVGIDLETDLPDDPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIE 80
Query: 65 EGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124
+D + ER ++ L + L K ++ E +EH + + N I
Sbjct: 81 MA----LDVFQNS---ERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAEL-NLKDAIG 132
Query: 125 MHEPSTWVGKG----QLLLAKGEVEQA---SSAFKIVLEAD--------RDNVPALLGQA 169
+P TW+G +L +G ++A S F + A+ + N LL +A
Sbjct: 133 F-DP-TWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRA 190
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ + + Y SL+ ++ L ++P R+GIGLC ++L A +++QRALQL+P+
Sbjct: 191 KLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPK 250
Query: 230 NVEALVALAVMDLQ------ANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
N A + + + + + N+ K + + F + + L L +++F
Sbjct: 251 NTSASILVLLGEFRESFTNSTNDKTFKEAFTKALSDLNNIFSENQHNPVLLTLLQTYYYF 310
Query: 281 TGQHFLVEQLTETALAVTNHGPTK----------SHSYYNLARSYHSKGDYEKAGLYYMA 330
G + +T L + +H K S S + R++++ GDY K+ + +
Sbjct: 311 KGDY-------QTVLDIYHHRILKMSPMIAKIVLSESSFWCGRAHYALGDYRKSFIMFQE 363
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV--- 387
S+K K + + GLGQ Q+K ++ FE + + E LG +Y
Sbjct: 364 SLK---KNEDNLLAKLGLGQTQIKNNLLEESIITFENLYKTNESLQELNYILGMLYAGKA 420
Query: 388 -------------QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434
Q EKA + L + K+ + L+ S + +KT
Sbjct: 421 FDAKTAKNTSAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQNQYKT 480
Query: 435 ARTLLKKAGE-------EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487
+ L KA E E+P+EVLNN+ HF G+F A FK A
Sbjct: 481 SLDYLSKALEEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA------------- 527
Query: 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547
K V D S+ +T+ +N+AR E+ +D + +
Sbjct: 528 -KAKVSDKDESV------------------------NITLEYNIARTNEK-NDCEKSESI 561
Query: 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLGDLEL 604
Y + + Y+ A +R + A++ ++ +S E+ N+ L +N S G L
Sbjct: 562 YSQVTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG-WYL 619
Query: 605 KNDDWVKAKETFRAASDAT----DGKDSYATLSLGNWNYFAAL-----RNEKRAPKLEAT 655
KN K E + T + D+YA +SL N A RN K K + +
Sbjct: 620 KNSKERKNNEKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEKSKHS 679
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+L KA +LY +V+ N++AA G ++ AE + + ++ +V+++ D
Sbjct: 680 YL-KAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE------D 732
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY-------EAEQWQ 767
V +NLAH Y + A++ Y+ L+KF T IL L R Y +Q
Sbjct: 733 VQLNLAHCYLEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWYARAIKERSVNFYQ 792
Query: 768 DCKKSLLRAIHL-----APSNYTLRFDAGVAMQKFS-ASTLQKTR---RTADEVRSTVAE 818
++ A+ L + S + +A+ F A TL+++ RT +++ ++
Sbjct: 793 KALENAKTALDLFVKESSKSKFIHSVKFNIALLHFQIAETLRRSNPKFRTVQQIKDSLEG 852
Query: 819 LENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREE---QQNRQ 875
L+ + +F L+ ++ ++++ ++ + + +A + R E+EE +Q+ +
Sbjct: 853 LKEGLELFRELNDLKEFNM--IPKEELEQRIQLGETTMKSA-LERSLNEQEEFEKEQSAK 909
Query: 876 RQEAAR---QAALAEEARRKAEEQKKYL-LEK-----RKLEDEQKRLRQQEE 918
EA + + L E+ K EE+ + L LEK RKL+DE ++L Q+ E
Sbjct: 910 IDEARKILEENELKEQGWMKQEEEARRLKLEKQAEEYRKLQDEAQKLIQERE 961
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 942 | ||||||
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.980 | 0.846 | 0.863 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.976 | 0.847 | 0.850 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.979 | 0.848 | 0.848 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.977 | 0.872 | 0.854 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.988 | 0.866 | 0.836 | 0.0 | |
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.952 | 0.842 | 0.831 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.962 | 0.863 | 0.815 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.978 | 0.845 | 0.795 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.950 | 0.845 | 0.770 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.954 | 0.806 | 0.737 | 0.0 |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1679 bits (4348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/924 (86%), Positives = 862/924 (93%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHE STWVGKGQLLLAKG+VEQA +AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV+P CP A+R+GIGLC YKLGQ KAR+AFQR LQLDPENVEALVAL +M
Sbjct: 181 SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL N+A+GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE NKPH+F+ PYYGLGQVQLKLGDFRS
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+L+NFEKVLE+YP+NCE LKALGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 361 SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I+SDTGAALDAFKTAR LLKK GEEVPIE+LNNIGV++FE+GEFE A Q+FK+A+GDGIW
Sbjct: 421 ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ +D K +Y DA SM FKDMQLFH+ E DG+ VELPWNKVTVLFNLARLLEQ+++
Sbjct: 481 LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
T AS+LYRLILFK+ DY+DAYLRLAAIAKARNN+QLSIELV +ALKVN K PN+L MLG
Sbjct: 541 TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFR+ASDATDGKDSYATLSLGNWNYFAA+R+EKRAPKLEATHLEKA
Sbjct: 601 DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGVVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 661 KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCLRKFYYNTD+Q+LLYLARTHYEAEQWQDCKK+LLRAIHLA
Sbjct: 721 AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAEL+NAVR+FS LSAASNLH HGF
Sbjct: 781 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGF 840
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI THV YCKHLL+AAK+H EAAEREE QNR R E ARQ LAEEARRKAEEQ+K+
Sbjct: 841 DEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQ 900
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVK 924
LE+RK EDE KR+ QQE+HF+RVK
Sbjct: 901 LERRKQEDELKRVMQQEQHFERVK 924
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1664 bits (4310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/924 (85%), Positives = 864/924 (93%), Gaps = 4/924 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWL+IAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEID+YYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRAL V+P CP A+RLGIGLCRYKLGQ KA+QAF+R LDPENVEALVALA+M
Sbjct: 181 SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I SDTGAALDAFKTARTL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 418 ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ ++ + K+ IDA+ S LQFKDM+LFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 478 LSFINEEKKS-SIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLND 536
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+ AS+LYRL+LFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 537 SGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 596
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWVKAKET RAASDAT+GKDSYA+LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 597 ELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKA 656
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 657 KELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 716
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 717 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 776
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 777 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 836
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YC HLL AAK+H EAAEREEQQ RQRQE ARQ A AEEARRKAEEQ+K+
Sbjct: 837 DEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQ 896
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVK 924
+E+RK EDE KR++QQEEHF+RVK
Sbjct: 897 MERRKQEDELKRVQQQEEHFRRVK 920
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1664 bits (4308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/924 (84%), Positives = 862/924 (93%), Gaps = 1/924 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++Q+R
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ D DNVPALLGQACVEFNRGR+SD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKR LQV+P+CP A+RLGIGLCRYKLGQ KA+QAF+R LQLDPENVE+L+ALA+M
Sbjct: 181 SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 361 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I SDTGAALDAFKTA TL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 421 ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ ++ + K+ IDA+ S LQFKDMQLFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 481 LSFINEENKS-SIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYD 539
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+ AS+ YRLILFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 540 SGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 599
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWVKAKET R ASDATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 600 ELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKA 659
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KEL TRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 660 KELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 719
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 720 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 779
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 780 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 839
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YC HLL AAK+H EAAE EEQQ RQRQE ARQ ALAEEARRKAEEQ+K+
Sbjct: 840 DEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQ 899
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVK 924
+E+RK EDE KR+++QEEHF+RVK
Sbjct: 900 MERRKQEDELKRVQKQEEHFRRVK 923
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1647 bits (4264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/924 (85%), Positives = 855/924 (92%), Gaps = 3/924 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS EIDEYYADVRYERIAILNALG YY+YLGK+ETKQREKEE+FI AT++YNKA
Sbjct: 61 QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AF+IVLE DRDNV ALLGQACVE++RG Y +
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL +KRALQV+P CPGA+RLGIG C YKLG +GKA AFQR LDPENVEALV+LA++
Sbjct: 181 SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NEAA IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYE A YY ASVKEINKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKAAKIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+DTGAALDAFKTAR+LLKK GEEVPIEVLNNI VIHFE+ E E A Q+FK+ALGDGIW
Sbjct: 418 ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
LT L+ K TY +DA++S+LQ+KDMQ+F R E +G+ VEL WNKVT LFNLARLLEQ+H+
Sbjct: 478 LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
T AS LYRLILFKY DYVDAYLRLAAIAKARNNL LSIELVNEAL VN K PNALSMLG
Sbjct: 538 TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFRAAS+ATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 598 DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLFTQVQEAASGS+FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCL+KF+YNTD+QILLYLARTHYEAEQWQDCK++LLRAIHL
Sbjct: 718 AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSAASNL+ +GF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGF 837
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKINTHVEYCKHLL+AA +HREAAEREEQQNRQR + ARQ ALAEEARRKAEEQ+K+
Sbjct: 838 DEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ 897
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVK 924
LE+RK EDE KR+RQQEEHF+RVK
Sbjct: 898 LERRKQEDELKRVRQQEEHFERVK 921
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1631 bits (4223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/934 (83%), Positives = 853/934 (91%), Gaps = 3/934 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A+RLGIGLCRY+L Q GKA+QAF+R LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 238 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 298 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 418 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 478 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 538 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 598 ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 718 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 837
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 838 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 897
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKARIFYICSIK 934
LE+RKLEDE+KR+ QQE+HF+RVK + I K
Sbjct: 898 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPAK 931
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1589 bits (4115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/924 (83%), Positives = 831/924 (89%), Gaps = 27/924 (2%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+Y+RIAILNALG YY+YLGKIETKQREKEE+FI AT+YYNKA
Sbjct: 61 QILEEGSSNDIDEYYADVKYDRIAILNALGAYYSYLGKIETKQREKEEYFIQATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE+EQA +AFKIVLE DRDNV ALLGQACVE+NR Y++
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIEQAYNAFKIVLEGDRDNVSALLGQACVEYNRSHYNE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQVHP CPG+ LDPENVEALV+LA++
Sbjct: 181 SLKSYKRALQVHPECPGS---------------------------LDPENVEALVSLAIL 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NE GIR+GME MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 214 DLQTNEVNGIRRGMESMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYE A YY ASVKE NKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYETASRYYWASVKETNKPSEFVFPYYGLGQVQLKLGEIKN 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIY QLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYAQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
ISSDTGAALDA KTAR+LLKK G EVP+EVLNNIGVI+FE+ E E A ++FK+A+GDGIW
Sbjct: 394 ISSDTGAALDALKTARSLLKKGGHEVPVEVLNNIGVIYFEREELELALETFKEAVGDGIW 453
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L LD K KTY IDA+AS+L +KDMQ FH+ E DG+ VEL W+KVT LFNLARLLEQ+H+
Sbjct: 454 LAFLDGKAKTYTIDAAASILHYKDMQFFHQLEQDGHRVELTWDKVTALFNLARLLEQMHN 513
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
A+VLY LILFKY DYVDAYLRLAAI+KARNNLQLSIELVNEALKVN K PNALSMLG
Sbjct: 514 IETANVLYVLILFKYPDYVDAYLRLAAISKARNNLQLSIELVNEALKVNDKCPNALSMLG 573
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFRAAS+ATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 574 DLELKNDDWVKAKETFRAASEATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKA 633
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLF +VQEAASGS+FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFMEVQEAASGSIFVQMPDVWINL 693
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCLRKFYY+TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFALAVKMYQNCLRKFYYSTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA 753
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNY LRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSA+SNLH HGF
Sbjct: 754 PSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSASSNLHFHGF 813
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKINTHVEYCKHLL+AAK+HREAAEREEQQNRQRQE ARQ ALAEEARRKAEEQKK+L
Sbjct: 814 DEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMALAEEARRKAEEQKKFL 873
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVK 924
LEKRK EDE KR+RQQEEHF+RVK
Sbjct: 874 LEKRKQEDELKRVRQQEEHFERVK 897
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1580 bits (4091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/934 (81%), Positives = 830/934 (88%), Gaps = 27/934 (2%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAA---------------------------LDPENVEALVGLAII 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 214 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 394 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 453
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 454 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 513
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 514 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 573
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LE KNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 574 ELEXKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 633
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 693
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 753
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 754 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 813
Query: 841 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 814 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 873
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKARIFYICSIK 934
LE+RKLEDE+KR+ QQE+HF+RVK + I K
Sbjct: 874 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPAK 907
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1561 bits (4042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/925 (79%), Positives = 829/925 (89%), Gaps = 3/925 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 839
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 840 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 899
FD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 900 LLEKRKLEDEQKRLRQQEEHFQRVK 924
LEKRK E+E +RL+Q+EE FQR+K
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIK 923
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1493 bits (3865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/925 (77%), Positives = 803/925 (86%), Gaps = 30/925 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FILAT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKHREKEEQFILATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL YKRALQV P CP A LDP+NVEALVAL +M
Sbjct: 181 SLNLYKRALQVFPGCPAA---------------------------LDPDNVEALVALGIM 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 214 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGDYEKAG+YYMA++KE NKP EF+FPY+GLGQVQLKLG+ +
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELK 333
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ +KA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 334 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNDKALEYMRKATKLDPRDAQAFVGLGEL 393
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA +FK+ALGDGI
Sbjct: 394 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALDNFKEALGDGI 453
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQ+H
Sbjct: 454 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQLH 511
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ LY+LILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 512 KTEAATFLYQLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 571
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 572 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 631
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 632 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 691
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFALA+KMYQNCLRKF+ NTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 692 LAHVYFAQGNFALAVKMYQNCLRKFFNNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 751
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 839
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 752 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 811
Query: 840 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 899
FD KKI THV+YC HLL+AAK+HREAAEREE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 812 FDSKKIQTHVQYCSHLLEAAKVHREAAEREELQNRQRLEVARQAALAEEARRKAEEQRKY 871
Query: 900 LLEKRKLEDEQKRLRQQEEHFQRVK 924
LEKRK E+E +RL+Q+EE QR+K
Sbjct: 872 QLEKRKQEEELRRLKQEEEKIQRIK 896
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1478 bits (3825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/972 (73%), Positives = 809/972 (83%), Gaps = 73/972 (7%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSP---------------EIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 61 QILEEGSSSGKQLYDDAASICSRIDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 120
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 121 KEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 180
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA-- 223
LGQA VEFNRGR+S+SL+ YKLGQL KARQAF R
Sbjct: 181 LGQASVEFNRGRFSESLQL-----------------------YKLGQLDKARQAFDRVLQ 217
Query: 224 ------------------------------LQLDPENVEALVALAVMDLQANEAAGIRKG 253
LQLDP+NVEALVAL +MDLQAN++ G+RKG
Sbjct: 218 ASGTGMFISSSYDIADCMRQQIVLITIILFLQLDPDNVEALVALGIMDLQANDSIGMRKG 277
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
M++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT HGPTKSHS+YNLAR
Sbjct: 278 MDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTHGPTKSHSFYNLAR 337
Query: 314 SYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
SYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+Y
Sbjct: 338 SYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVY 397
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 432
PDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAF
Sbjct: 398 PDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAF 457
Query: 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492
K ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K +
Sbjct: 458 KMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--L 515
Query: 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552
S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLIL
Sbjct: 516 EQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLIL 575
Query: 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 612
FKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKA
Sbjct: 576 FKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKA 635
Query: 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672
KETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH
Sbjct: 636 KETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHN 695
Query: 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732
SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL
Sbjct: 696 SNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFAL 755
Query: 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792
+KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G
Sbjct: 756 TVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGA 815
Query: 793 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 852
MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC
Sbjct: 816 VMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYC 875
Query: 853 KHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKR 912
HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +R
Sbjct: 876 SHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRR 935
Query: 913 LRQQEEHFQRVK 924
L+Q+EE FQR+K
Sbjct: 936 LKQEEEKFQRIK 947
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 942 | ||||||
| TAIR|locus:2051592 | 1091 | ELF8 "EARLY FLOWERING 8" [Arab | 0.978 | 0.845 | 0.763 | 0.0 | |
| DICTYBASE|DDB_G0277841 | 1106 | ctr9 "RNA polymerase II comple | 0.871 | 0.742 | 0.322 | 1.6e-125 | |
| UNIPROTKB|Q4QR29 | 1157 | ctr9 "RNA polymerase-associate | 0.495 | 0.403 | 0.382 | 6.3e-110 | |
| UNIPROTKB|Q6PD62 | 1173 | CTR9 "RNA polymerase-associate | 0.626 | 0.502 | 0.338 | 3e-83 | |
| MGI|MGI:109345 | 1173 | Ctr9 "Ctr9, Paf1/RNA polymeras | 0.626 | 0.502 | 0.338 | 3e-83 | |
| UNIPROTKB|G3V897 | 1173 | Ctr9 "SH2 domain binding prote | 0.626 | 0.502 | 0.338 | 3e-83 | |
| UNIPROTKB|F1S6V3 | 1173 | CTR9 "Uncharacterized protein" | 0.626 | 0.502 | 0.338 | 3e-83 | |
| UNIPROTKB|E1C9K0 | 1167 | CTR9 "Uncharacterized protein" | 0.626 | 0.505 | 0.339 | 3.3e-83 | |
| UNIPROTKB|Q6DEU9 | 1172 | ctr9 "RNA polymerase-associate | 0.495 | 0.398 | 0.376 | 2.9e-81 | |
| ZFIN|ZDB-GENE-030131-3782 | 1160 | ctr9 "Ctr9, Paf1/RNA polymeras | 0.495 | 0.402 | 0.374 | 1.2e-80 |
| TAIR|locus:2051592 ELF8 "EARLY FLOWERING 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3726 (1316.7 bits), Expect = 0., P = 0.
Identities = 706/925 (76%), Positives = 798/925 (86%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 839
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 840 FDEKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKY 899
FD KKI THV+YC HLL+AAK+H +KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 900 LLEKRKLEDEQKRLRQQEEHFQRVK 924
LEKRK E+E +RL+Q+EE FQR+K
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIK 923
|
|
| DICTYBASE|DDB_G0277841 ctr9 "RNA polymerase II complex component" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 277/860 (32%), Positives = 494/860 (57%)
Query: 4 VYIPVQN-SEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+YIP++ +++ +++ + LP D+ +++++LKAE APLDLWL +A EY+KQ ++ F ++
Sbjct: 10 IYIPIRGFNDQALKIDISSLP-DSKELIEVLKAELAPLDLWLKLANEYYKQDRITDFIEV 68
Query: 63 LEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
L++ + ++++YY D + +RIA+LNAL YYT LG E + +EE+F AT ++ KA R
Sbjct: 69 LKQVTDADLEQYYKDSKLDRIAMLNALASYYTQLGSQEKDKSRREEYFSNATFHFTKADR 128
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGR 177
ID H+P TW+GK LLL KG+ E+A S FK VL+ + N +PA LG AC+ FN+G
Sbjct: 129 IDPHQPLTWIGKAVLLLTKGDYERAESNFKQVLDLAKSNNTLPVLPAKLGSACILFNQGN 188
Query: 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
Y +L+ Y++ +Q + +C ++RLG+G C +KLG+ KA++AF+R L+LD +NVEA++ L
Sbjct: 189 YIKALDTYQKVIQQNSNCLPSVRLGLGYCYFKLGRTKKAKEAFKRVLELDRDNVEAMIGL 248
Query: 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
A++ + N+ I + M+ + A+++ P ++ LN+LANH+FF G++ V L A
Sbjct: 249 ALVLMNENQ---IPEAMKLILSAYQLAPTNSIVLNHLANHYFFRGEYNKVNTLGVAAFNN 305
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
T+ K+ S Y + R++H+ ++ A YY +V++ P ++ +GLGQ+ + D
Sbjct: 306 TDVAHIKAESAYLIGRAFHATQRWQDAIQYYHQAVQK--NPDLYL-AQFGLGQIHIHNED 362
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
+ A+ FE+VL P+N ETL+ LG +Y G + K+ +
Sbjct: 363 YDKAILCFEQVLSKQPNNYETLQILGSLYKH-GSLYKSN-----VKSTTTTTSTTTTTNN 416
Query: 418 ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN--NIGVIHFEKGEFESAHQSFKDAL 475
+ I+++ + + + +LKKA E P + N +G + E E +A ++++ L
Sbjct: 417 NININNNNNLSNEIINKIKNVLKKATELNPNDSSNWFELGQV-LESTEVSTALEAYEKGL 475
Query: 476 G----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV-ELPWNKVTVLFN 530
DGI + L+ + V+ +L + + G + + +T +N
Sbjct: 476 NLLKKDGI-VPSLEIQNNIAVLRHQKGLLVEAEQTYLDIIKQSGYQLNQFKSINITSTYN 534
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
LARL E + A LY+ I+ ++ +Y D YLRL+ I K + + + E + E L +
Sbjct: 535 LARLYETMGQVNKAEELYKGIIKEHPNYYDCYLRLSCICKQQGDYYEAGEWIREVLDIQP 594
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK-DSYATLSLGNWNYFAALRNEKRA 649
A ++ G+L L ++W A++ F ++ D K ++YA+LSLGN Y A N +
Sbjct: 595 DNQEAWALYGNLHLYKEEWYPAQKNFEQITENPDNKNETYASLSLGNIYYNAKFSNPDKV 654
Query: 650 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709
K ++ A++ Y RV+ ++ +N+YAANG G+++AEKG +++ + F Q++EA+ +
Sbjct: 655 EK----YILNAEQFYNRVLTKNPTNIYAANGIGMIIAEKGNLNLAGETFLQIREASMDCI 710
Query: 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ-ILLYLARTHYEAEQWQD 768
P V +NLAH+Y ++G F A+K+Y+ CL+K + + I++YLA+ +++A ++ D
Sbjct: 711 ----P-VSVNLAHIYVSKGLFDNAIKLYEGCLKKSTSPKEIETIIMYLAKVYFDANRFYD 765
Query: 769 CKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSH 828
K++L +AIH+ P N ++ F+ ++++ + L+K ++ A E + + ELE A R+ +
Sbjct: 766 SKQTLKKAIHMYPHNLSIHFNLAISIEMQATIFLEKHQKNATETFNIIKELEFAQRLLTP 825
Query: 829 LSAASNLHLHGFDEKKINTH 848
L+ + F K TH
Sbjct: 826 LANTKSTPKLNFSPSKAKTH 845
|
|
| UNIPROTKB|Q4QR29 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 183/478 (38%), Positives = 279/478 (58%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASL 478
|
|
| UNIPROTKB|Q6PD62 CTR9 "RNA polymerase-associated protein CTR9 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 3.0e-83, P = 3.0e-83
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| MGI|MGI:109345 Ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 3.0e-83, P = 3.0e-83
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|G3V897 Ctr9 "SH2 domain binding protein 1 (Tetratricopeptide repeat containing), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 3.0e-83, P = 3.0e-83
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|F1S6V3 CTR9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 3.0e-83, P = 3.0e-83
Identities = 205/606 (33%), Positives = 326/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQS 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|E1C9K0 CTR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 3.3e-83, P = 3.3e-83
Identities = 206/606 (33%), Positives = 325/606 (53%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR 480
Query: 478 GIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV--ELPWNKVTVLFNLAR 533
D + + S ++ + ++ M FH E ++ E P N V L
Sbjct: 481 AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHP-NYVDCYLRLGA 539
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + AS ++ L QD+ DA+ + + A+ + LK
Sbjct: 540 MARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQN 599
Query: 594 NALSML 599
+ SML
Sbjct: 600 DTYSML 605
|
|
| UNIPROTKB|Q6DEU9 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 2.9e-81, P = 2.9e-81
Identities = 180/478 (37%), Positives = 277/478 (57%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASL 478
|
|
| ZFIN|ZDB-GENE-030131-3782 ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 1.2e-80, P = 1.2e-80
Identities = 179/478 (37%), Positives = 280/478 (58%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ +T Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKDLINQSTLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F+ VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + D +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASST--FVLPFFGLGQMYVYRRDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLGE 418
FEKVL+ YP+N ET+K LG +Y EK A+E L+K D +A+I+L +
Sbjct: 361 AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQ 420
Query: 419 LLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F +L
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASL 478
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | PAFC901 | PAF1 complex component (1056 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00060987 | SubName- Full=Putative uncharacterized protein; (321 aa) | • | • | 0.605 | ||||||
 | PAFB901 | PAF1 complex component (620 aa) | • | • | 0.603 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 942 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-26 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-12 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-11 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-10 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 9e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-06 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 6e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 7e-05 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 7e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 6e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 6e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 7e-04 | |
| pfam13371 | 73 | pfam13371, TPR_9, Tetratricopeptide repeat | 7e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 8e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.001 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.002 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 0.002 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| pfam06098 | 288 | pfam06098, Radial_spoke_3, Radial spoke protein 3 | 0.002 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.003 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.004 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 0.004 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| TIGR00540 | 367 | TIGR00540, TPR_hemY_coli, heme biosynthesis-associ | 0.004 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 151/707 (21%), Positives = 256/707 (36%), Gaps = 101/707 (14%)
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
L G++E A +++ L D ++ A LG A + R+ ++ L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ L L LG + A A+++A+ L P N+ L+ALA + ++A E K + +
Sbjct: 196 LLLKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 259 RAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315
+ P Y +++ ++ E ET P + S
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNY---------EDARETLQDALKSAPEYLPALLLAGASE 305
Query: 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+ G+ E+A Y +K P+ L +QL+LG A+ L + PD+
Sbjct: 306 YQLGNLEQAYQYLNQILKYA--PN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS----------DT 425
L LG Y+ LG EKA E L KA ++DP +A A LG +S +T
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
Query: 426 GAALD----------------------AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463
A LD A A+ L KK + + L +G I+ KG+
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL--LGAIYLGKGD 480
Query: 464 FESAHQSFKDALG-------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516
A ++F+ AL L +D + + ++ +F+ + D
Sbjct: 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEG----NPDDAIQRFEKVLTI-----DPK 531
Query: 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576
++ + LA L + + A ++ L LA + L+
Sbjct: 532 NLR-------AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584
Query: 577 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGKDSYATLSLG 635
++ ++NEA P A MLG +L D KA +F+ + D + L+
Sbjct: 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
Query: 636 NW---NYFAALRNEKRAPK----------------LEATHLEKAKELYTRVIVQHTSNLY 676
NY A+ + KRA + L A E AK++ + QH
Sbjct: 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
G + + + + + + + A S I L A GN A A+K
Sbjct: 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA------IKLHRALLASGNTAEAVKT 758
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ L+ + DA + LA + + + K + AP N
Sbjct: 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-23
Identities = 120/545 (22%), Positives = 214/545 (39%), Gaps = 48/545 (8%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143
A L+ LG YL + ++ A +Y KA+ +D + G L++G+
Sbjct: 364 AALSLLG--EAYLALGDFEK---------AAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
+A + + + D + A L G++ +L K+ + P L +
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-L 471
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G G L KAR+AF++AL ++P+ A LA +D+Q + + ++ I
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ---RFEKVLTI 528
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P A+ LA + TG E A + P + LA+ Y KG +K
Sbjct: 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKK 585
Query: 324 AGLYYMASVKEINKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A +A + E + LG+ QL GD A+++F+K+L + PD+ L L
Sbjct: 586 A----LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 442
Y + KA L++A ++ P + +A I L +LL+ A K A++L K+
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQH 699
Query: 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502
+ L G ++ + ++ +A Q+++ AL + + S + ++
Sbjct: 700 PKAALGFEL--EGDLYLRQKDYPAAIQAYRKAL----------KRAPS-----SQNAIKL 742
Query: 503 KDMQLFHRFENDGNHVELPW-----NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557
L + W N + LA L D A Y+ ++ K D
Sbjct: 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
LA + + + ++E ALK+ P L LG L ++ + +A R
Sbjct: 803 NAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861
Query: 618 AASDA 622
A +
Sbjct: 862 KAVNI 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-14
Identities = 159/806 (19%), Positives = 271/806 (33%), Gaps = 150/806 (18%)
Query: 8 VQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGS 67
+N +E R +D+ +L A+ +D L+ G +E +
Sbjct: 171 AENRFDEARALIDE----------VLTADPGNVDALLLKGDLLLSLGNIELALAAYRK-- 218
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127
+R IA+L AL G+ E A ++ + + +
Sbjct: 219 -------AIALRPNNIAVLLALATILIEAGEFE-----------EAEKHADALLKKAPNS 260
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
P K + K E A + L++ + +PALL E+ G + ++ +
Sbjct: 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247
L+ P+ A RL + + +LG++ +A AL LDP++ AL L L +
Sbjct: 321 ILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307
K E + +A E+ P A A L G ETA + P +
Sbjct: 380 E---KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRA 433
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSAL 362
L SY G ++KA +A+ K++ + + LG + L GD A
Sbjct: 434 DLLLILSYLRSGQFDKA----LAAAKKLEKKQPDNAS----LHNLLGAIYLGKGDLAKAR 485
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422
FEK L I PD L I +Q G + A + K IDP++ +A + L L
Sbjct: 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY-- 543
Query: 423 SDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG-- 478
+ A L+KA E P IE + + KG+ + A +A
Sbjct: 544 ----LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599
Query: 479 ---IWLTLLDS---------------KTKTYVIDASASMLQFKDMQLFHR---------- 510
WL L + K D++ ++L D +
Sbjct: 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
Query: 511 --FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E ++ E LA+LL T +A + + + ++ + +
Sbjct: 660 RALELKPDNTEA-------QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712
Query: 569 AKARNNLQLSIELVNEALKV----------------NGKYPNA----------------- 595
+ + +I+ +ALK +G A
Sbjct: 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772
Query: 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655
+ L +L L D+ KA + ++ D+ L N A L E + P+
Sbjct: 773 RTALAELYLAQKDYDKAIKHYQTVVKKA--PDNAVVL-----NNLAWLYLELKDPRALE- 824
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+ E+A +L + + G +L EKG+ D + L + A +
Sbjct: 825 YAERALKL-------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-----AA 872
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCL 741
+ +LA A G A A K L
Sbjct: 873 IRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-13
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
NL Y+ GDY++A YY ++ E++ + YY L KLG + AL ++EK
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELD--PDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LE+ PDN + LG Y +LG+ E+A E KA ++DP
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-12
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKK 441
+DP +A+A+ +LG AL+A++ A L
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-11
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 14/257 (5%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHF 278
+ ALQ DP + EA L + A G EK +++A + L LA +
Sbjct: 45 LKNALQKDPNDAEARFLLG----KIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
G+ V + + G + + LA Y G E A Y ++
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA--YLGLGQLELAQKSYEQALA---ID 155
Query: 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
++ GL Q+ L F A ++VL P N + L G + + LG IE A
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 399 LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458
RKA + P + + L +LI G +A K A LLKKA L ++
Sbjct: 216 YRKAIALRPNNIAVLLALATILIE--AGEFEEAEKHADALLKKAPNSPLAHYLK--ALVD 271
Query: 459 FEKGEFESAHQSFKDAL 475
F+K +E A ++ +DAL
Sbjct: 272 FQKKNYEDARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G L G+ ++A ++ LE D DN A A + G+Y ++LE Y++AL+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P A +GL YKLG+ +A +A+++AL+LDP
Sbjct: 63 LDPDNAKAYYN-LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ S LA + + +GD + L + + G Q++ G+F A
Sbjct: 63 NPEDLSIAKLATALYLRGD-ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEA 119
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
++ K + P + E LG QLG+ ++A+ R+A ++ P + +LG L+
Sbjct: 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179
Query: 422 SSDTGAALDAFKTARTLLKKA 442
+ A TLL A
Sbjct: 180 LRGD------LEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 34/133 (25%), Positives = 44/133 (33%), Gaps = 38/133 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ P + +VLNN G +G
Sbjct: 98 LAPNNG--------------------------------------DVLNNYGAFLCAQGRP 119
Query: 465 ESAHQSFKDALGD 477
E A Q F+ AL D
Sbjct: 120 EEAMQQFERALAD 132
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-09
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
E L LG++Y +LG ++A E KA ++DP +A A+ +L L ++ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------LGKYEEAL 54
Query: 437 TLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+KA E P + N+G+ +++ G++E A ++++ AL
Sbjct: 55 EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
ALL + + G Y ++LE+Y++AL++ P + YKLG+ +A + +++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 224 LQLDPENVEALVALAVMDLQANE 246
L+LDP+N +A L + + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGE 463
+ + G L ++ A ++A E P L N G+ + G+
Sbjct: 97 NNGDVLNNYGTFLCQ------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 464 FESAHQSFKDAL 475
F+ A + AL
Sbjct: 151 FDKAEKYLTRAL 162
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 45/207 (21%)
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
IR+ + L + G L A++ +AL+ DP++ A +ALA+ L E
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-------- 82
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+A + + AL + + N
Sbjct: 83 ----KAEDSF---------------------------RRALTLNPNNGD---VLNNYGTF 108
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+G YE+A + ++++ P G LK GDF A + L+I P
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPAR-SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRK 401
E+L L +Y GQ + A+ L +
Sbjct: 168 RPESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 42/227 (18%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
+S D KA + + L A Y +QG +E ++ L++ + E D
Sbjct: 21 SSRTTDRNKAAKIRVQL----ALGYLEQGDLEVAKENLDK--ALEHDPDDYLAY------ 68
Query: 86 LNALGVYYTYLGKIETKQREKEE-----------------------HFILATQYYNKASR 122
AL +YY LG++E + + A Q + +A
Sbjct: 69 -LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
Query: 123 IDM--HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+ + G L G+ ++A L+ D +LL A + + RG+Y D
Sbjct: 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + +R Q + ++ LGI + R LG A + QL
Sbjct: 188 ARAYLERYQQTYNQTAESLWLGIRIAR----ALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K + A +YY KA +D + G+ E+A ++ LE D DN A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ G+Y ++LE Y++AL++ P+
Sbjct: 72 YNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 74/378 (19%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALG 90
+ A + WL++ R G + + ++ +A+
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK----------------LLALQPDSA 635
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L + + A +A + +G QLLLA E A
Sbjct: 636 LALLLLADAYAVMKNYAK----AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 151 FKIVLEADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
K L+ + + Y +++ Y++AL+ PS AI+L L
Sbjct: 692 AKS-LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL---- 746
Query: 210 LGQLGKARQAFQRA---LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
G +A + L+ P + ALA + L + K ++ Q + P
Sbjct: 747 -LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD---KAIKHYQTVVKKAPD 802
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A+ LN NLA Y + +A
Sbjct: 803 NAVVLN-------------------------------------NLAWLYL-ELKDPRALE 824
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
Y ++K + G + ++ G+ AL K + I P+ L
Sbjct: 825 YAERALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881
Query: 387 VQLGQIEKAQELLRKAAK 404
+ G+ +A++ L K
Sbjct: 882 LATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L +G YKLG +A + +++AL+LDP+N +A LA + + + +E ++A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKA 60
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
E+ P A A L ++ G++ + E AL +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 403
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 404 KIDP 407
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 68/380 (17%), Positives = 127/380 (33%), Gaps = 44/380 (11%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L + + +TLL G E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQAL 152
Query: 476 GDGI---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514
L+D + A +L+ + E
Sbjct: 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212
Query: 515 ----GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 569
+ L N + VL LA L+E A L+ + YL+ A +
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVD 271
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629
+ N + + E + +ALK +Y AL + G E + + +A +
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQ 330
Query: 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 689
A L + +L +++A + + + A + G G
Sbjct: 331 ARRLLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377
Query: 690 QFDVSKDLFTQVQEAASGSV 709
F+ + + + E +
Sbjct: 378 DFEKAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQ 218
DN AL F G Y +++E Y++AL++ P + L KLG +A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA-EAYYNLALAYLKLGKDYEEALE 59
Query: 219 AFQRALQLDP 228
++AL+LDP
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ A + KA D + + GE + A +++ L +N L
Sbjct: 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110
Query: 170 CVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+GR ++++ ++RAL + + +GLC K GQ +A + +RAL+LD
Sbjct: 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTL-ENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
P+ AL+ LA + +A + A R +E+ Q
Sbjct: 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 398 LLRKAAKIDPR 408
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 775 RAIHLAPSNYTLRFDAGVAMQK 796
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 48/235 (20%)
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
+ + ++ E+ P + A+ G E+ + AL + YY+ A+
Sbjct: 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQ 407
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+ KG++ +AG Y K I+ +FIF + LG Q K G S++ F + + +P
Sbjct: 408 LHFIKGEFAQAGKDYQ---KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
Query: 374 DNCETLKALGHIYVQLGQIEKAQE------------------------------------ 397
+ + G + + + ++A E
Sbjct: 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524
Query: 398 -----LLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEV 446
L KA IDP A + +LL+ D AL F+ A L + GE V
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK----PHEFIFPYYGLGQVQLKLGD 357
P + + NLA GDY++A +++ + E L ++ L LGD
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 358 FRSALTNFEKVLEIYPD 374
+ AL EK L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF---EIYPYCAMALNYLANHFFFT 281
+LD E + L + ++ + ++A ++ A+ALN
Sbjct: 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341
G+H +E L + + ++ P + SY A GD +KA + ++K ++ +
Sbjct: 345 GKH--LEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
Query: 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401
YY Q+ G+F A +++K +++ PD + LG + G I + R+
Sbjct: 402 ---YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
Query: 402 AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKK 441
K P + GELL+ + A++ F TA L K+
Sbjct: 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (109), Expect = 3e-05
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 5/259 (1%)
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKL 210
+ + + + + L + G +++LE + AL++ P+ A L + L KL
Sbjct: 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKL 72
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G+L +A + ++AL+L+ A AL + L + +E +++A + P +A
Sbjct: 73 GRLEEALELLEKALELELLPNLAE-ALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Query: 271 LNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329
LA + G + +L E AL + + + L + G YE+A
Sbjct: 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++K P + LG + LKLG + AL +EK LE+ PDN E L L + ++L
Sbjct: 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 390 GQIEKAQELLRKAAKIDPR 408
G+ E+A E L KA ++DP
Sbjct: 250 GRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLL 439
L Y++ G +E A+E L KA + DP D A++ L + A D+F+ A TL
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
G +VLNN G ++G++E A Q F+ A+ D
Sbjct: 96 PNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS--DTGAALDA 431
DN E LK LG+ +LG ++A E KA ++DP +A+A+ +L + D AL+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 432 FKTARTL 438
+ A L
Sbjct: 61 LEKALEL 67
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 4e-05
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
+L AL + A+ LG+L +A + + AL+L P + A +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L + + + + +E +++A E+ +A L E L A
Sbjct: 63 LLLAL-ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ + + GDYE+A Y +++ + +E LG + LG
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 357 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ AL EK L++ PD+ E L LG +Y++LG+ E+A E KA ++DP +A+A +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 416 LGELL 420
L LL
Sbjct: 242 LALLL 246
|
Length = 291 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-05
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
L A G Y ++L + AL +P A L +G + G+L +A + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA-LLLLGEALLRQGRLAEAAALLRAALA 59
Query: 226 LDPEN 230
DP++
Sbjct: 60 ADPDD 64
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-05
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 406 DPRDA 410
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 291 TETALAVTNHGPTKSH--SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YY 346
T + +V G S YN A + GDY +A + A +K P+ P YY
Sbjct: 125 TPGSASVDGDGAPVSPATKLYNAALDLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYY 182
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403
LG+ GD+ A F +V++ YP + + L LG +LG ++A L++
Sbjct: 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242
Query: 404 KIDPRDAQA 412
K P A
Sbjct: 243 KRYPGTDAA 251
|
Length = 262 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 40/171 (23%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + ++KA +++ +P + + QL KGE QA ++ ++ D D + + + +
Sbjct: 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG------------------------AIRLG---IGL 205
+ G + S+ ++R + P P AI L +
Sbjct: 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503
Query: 206 CRYKLGQLGKARQAFQ-------------RALQLDPENVEALVALAVMDLQ 243
L + KA FQ +AL +DPE A+ +A + LQ
Sbjct: 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQ 554
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG-QL 137
+ + +L L LG + + EE A + KA +D
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEE----ALELLEKALALDPDPDLAEALLALGA 139
Query: 138 LLAKGEVEQASSAFKIVLEAD---RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L G+ E+A ++ LE D + ALL + GRY ++LE ++AL+++P
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L +GL KLG+ +A + +++AL+LDP+N EAL LA++ L+ + +
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 255 EKMQRAFEIY 264
EK
Sbjct: 260 EKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 770
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 771 KSLLRAIHLAP 781
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGD 357
YY+ A GDY A I F+ +P +Y LG+ GD
Sbjct: 3 YYDAALLVLKAGDYADA----------IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGD 52
Query: 358 FRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F V++ YP + + L LG +LG EKA+ L++ K P + A
Sbjct: 53 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 404
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 405 IDPRDAQA 412
+DP + +A
Sbjct: 222 LDPANIRA 229
|
Length = 287 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L G+ ++A +A + L ALL +GR +++ + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 194 S 194
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 7e-04
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ +L +R L + P P R GL +LG A + L+L P+ +
Sbjct: 6 LREEDFERALAVVERLLLLAPDDPYERRDR-GLLYAQLGCFQAALADLEYFLELCPDAPD 64
Query: 233 ALVALAVM 240
A +
Sbjct: 65 AERIREQL 72
|
Length = 73 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 EVEQASSAFKIVLEADRDNVP--ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
E+E + + L+ + + LLG+A GR SD+L Y+ AL++ P I
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRA--YMALGRASDALLAYRNALRLAGDNP-EIL 193
Query: 201 LGIGLCRYKL--GQLG-KARQAFQRALQLDPENVEALVALA 238
LG+ Y Q+ KAR ++AL LDP N+ AL LA
Sbjct: 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234
|
Length = 287 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 842 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 900
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 901 LEKRKLEDEQKRLRQQEEHFQRVKARI 927
+ KLE +KRL QEE V +
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAV 90
|
Length = 198 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.001
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 863 REAAEREEQQNRQRQEAARQAA-----LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 917
+E E+EEQ +R+E R+AA EEARR+ EE+ + EK K + E++ ++QE
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 918 E 918
E
Sbjct: 104 E 104
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFE 366
NL + GDY++A Y +++ E YY L LKLG D+ AL + E
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNLALAYLKLGKDYEEALEDLE 62
Query: 367 KVLEIYP 373
K LE+ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 60/332 (18%), Positives = 114/332 (34%), Gaps = 38/332 (11%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++ Y +A++ P C LG K + AL+LDP+ +
Sbjct: 138 YRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195
Query: 233 ALV------------ALAVMDL---------------QANEAAGIRKGMEKMQRAFEIYP 265
AL A A++DL QA E + K + E P
Sbjct: 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP 255
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
++ ++ N+ L ++ G + S + E A
Sbjct: 256 ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+ A E I G + G AL + K +E+ P ++ +
Sbjct: 316 AFEKALDLGKLGEKEAI-ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE 445
++LG +KA+E KA K++ D + +L F A +K+ +
Sbjct: 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF------IKGEFAQAGKDYQKSIDL 428
Query: 446 VPIEVLNNI--GVIHFEKGEFESAHQSFKDAL 475
P + ++I GV +++G S+ +F+
Sbjct: 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 863 REAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 922
+E ER EQ+ + R E A E R + EE+ + E+R E E+K R+ EE ++
Sbjct: 41 QEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQ 100
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 406 DPRDAQAFIDLGELLI 421
DP ++L + L+
Sbjct: 370 DPNSPLLQLNLAQALL 385
|
Length = 484 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-ALQV 191
+ + L+ + +A+ K L+A +N A L A G + LQ
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198
Query: 192 HPSCPGAIRLGIGLCRYKLGQLGKAR--QAFQRALQLDPENVEALVALAVMDLQA--NEA 247
++ I L L Q Q QR L DP++VEA +ALA NEA
Sbjct: 199 QDKAAHGLQAQIEL----LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEA 254
Query: 248 A 248
A
Sbjct: 255 A 255
|
Length = 304 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 860 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 917
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKA-KQAA 130
Query: 918 EHFQRVKA 925
E + +A
Sbjct: 131 EAKAKAEA 138
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 863 REAAEREEQQN-RQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE- 917
E E EE RQ+Q E R A LAE R + E+++ EK + + + K +Q+E
Sbjct: 146 LEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRR-EEKERRKKQDKERKQREK 204
Query: 918 EHFQRVKARIF 928
E +++ AR F
Sbjct: 205 ETAEKIAARAF 215
|
This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well-conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation. Length = 288 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
A L ++ D A + L + D RL + + L I+ + LK +
Sbjct: 269 YAERLIRLGDHDEAQEIIEDALKRQWD--PRLCRLIPRLRPGDPEPL-IKAAEKWLKQHP 325
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
+ P LS LG L LKN W KA E AA YA L+
Sbjct: 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+G KLG+ +A + +++AL+L+P N
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.003
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKID 406
LG + L GD+ +A+ E+V E P+ E L L Y LG + E LR+A +
Sbjct: 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 441
P A + L +LL + A A R L++
Sbjct: 280 PG-ADLLLALAQLLEEQEGPEA--AQALLREQLRR 311
|
Length = 389 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFY 745
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV-------HPSCPGAIRLGIGLCRYKLGQLGKA 216
AL A V G Y ++LE ++AL++ HP + LG +A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPET-ARALNNLARLYLALGDYDEA 65
Query: 217 RQAFQRALQLDPE 229
+ ++AL L
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 55/241 (22%), Positives = 86/241 (35%), Gaps = 49/241 (20%)
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM------QRAFE 262
Q KA F LQ DPE EA + L + E A I + + + QR
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA 109
Query: 263 IYPYCAMALNYLANHFF------FTG------------QHFLV--------EQLTETALA 296
+ + +Y+A F Q L E+ + A
Sbjct: 110 LQ---QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAER 166
Query: 297 VTNHGPTK-----SHSYYNLARSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQ 350
+ G + Y LA+ + D ++A L A + I LG+
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII----LGR 222
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
V+L GD++ A+ E+VLE P+ E L+ L Y QLG+ + LR+A + +
Sbjct: 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282
Query: 410 A 410
Sbjct: 283 D 283
|
Length = 389 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.004
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 856 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 911
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 912 RLRQQEEHFQRVK 924
+ + ++ + K
Sbjct: 1419 KADEAKKKAEEKK 1431
|
Length = 2084 |
| >gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+L+ GD + EK L+ +PD+ L ALG + ++ KAQ L + + P
Sbjct: 283 GRLQPGDPSPLIKRAEKWLKKHPDDALLLLALGRLCLRQQLWGKAQSYLEASLSLAP-TE 341
Query: 411 QAFIDLGELL 420
+A ++L +L
Sbjct: 342 EAHLELAQLF 351
|
Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis [Unknown function, General]. Length = 367 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.004
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 942 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.98 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.98 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.96 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.93 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.92 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.84 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.78 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.76 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.75 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.72 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.72 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.72 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.46 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.42 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.33 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.24 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.22 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.18 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.18 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.17 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.17 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.16 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.12 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.12 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.09 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.08 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.96 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.95 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.92 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.83 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.82 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.81 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.8 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.79 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.78 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.71 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.66 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.6 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.57 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.55 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.53 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.47 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.46 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.45 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.43 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.43 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.38 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.35 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.27 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.26 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.12 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 98.11 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.09 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.08 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.07 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.07 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.01 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.94 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.93 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.92 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.87 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.87 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.86 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.85 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.85 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.77 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.75 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.73 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.67 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.57 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.47 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.46 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.46 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.43 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.42 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.4 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.39 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.33 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.33 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.33 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.32 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.32 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.29 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.26 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.24 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.15 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.1 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.0 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.93 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.86 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.86 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.85 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.81 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.81 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.8 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.79 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.76 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.72 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.71 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.69 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.63 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.62 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.6 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.56 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.56 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.52 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.46 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.44 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.43 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.39 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.34 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.31 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.18 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.06 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 96.06 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.96 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.93 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.81 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.79 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.77 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.62 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.61 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.54 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.53 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.38 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.34 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.13 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.06 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.96 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.91 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 94.83 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.79 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.7 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.63 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.6 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.38 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.1 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.94 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.73 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.71 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.68 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.63 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.59 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 93.55 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.18 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 93.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.92 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.88 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.86 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.73 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 92.72 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.62 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 92.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.54 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.45 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.05 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 92.05 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 91.89 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.63 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 91.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.43 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 91.24 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.06 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.04 | |
| PF12854 | 34 | PPR_1: PPR repeat | 90.94 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 90.93 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 90.81 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.7 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.26 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 90.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.1 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 89.87 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 89.78 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.49 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.28 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 89.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.03 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.78 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 88.71 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 88.66 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 88.58 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 88.44 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 88.41 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 88.4 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 88.4 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.34 | |
| PF12854 | 34 | PPR_1: PPR repeat | 88.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 87.67 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 87.49 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 87.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.38 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 87.35 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 87.22 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 87.16 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.96 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 86.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.48 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.02 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.46 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 85.0 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 84.72 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 84.05 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 83.91 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 83.77 | |
| PRK06568 | 154 | F0F1 ATP synthase subunit B; Validated | 83.3 | |
| PRK09174 | 204 | F0F1 ATP synthase subunit B'; Validated | 83.11 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 82.83 | |
| PF11214 | 105 | Med2: Mediator complex subunit 2; InterPro: IPR021 | 82.68 | |
| PF04714 | 52 | BCL_N: BCL7, N-terminal conserver region; InterPro | 82.51 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 82.3 | |
| COG0711 | 161 | AtpF F0F1-type ATP synthase, subunit b [Energy pro | 82.3 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 82.14 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 81.94 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.9 | |
| PRK13454 | 181 | F0F1 ATP synthase subunit B'; Provisional | 81.75 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 81.45 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 80.27 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-110 Score=885.39 Aligned_cols=883 Identities=42% Similarity=0.679 Sum_probs=823.3
Q ss_pred CceeeeccCCCCceEEEeCCCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHH
Q 002286 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (942)
Q Consensus 1 ~~~~~ip~~~~~~~~~~~~~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 80 (942)
|+||+|||++++|||+||+++|| |++|+++||++|.+++++|+.+|..|+++|+.++++.+|+.++. +...+|.++..
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~-~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLI-DANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhh-cccchhcchHH
Confidence 57999999999999999999999 99999999999999999999999999999999999999999983 44567888899
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~ 158 (942)
+.+.++..||.+|...|........+++.+..|+.+|+.+.+++......++..+..++..|.. +.|...|..+++.+
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988888999999999999999999999999999999999988866 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
|+|+.++++.|.+.+..|+|..|+.+|+.++..+|...+++++++|.|++++|+.+.|+..|+++++++|.++.++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc
Q 002286 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (942)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 318 (942)
.+.+...+...+..++..+.+++..+|.+|.++..|+..|+..|+|..+..+...++..+...+..+++++++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 002286 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (942)
Q Consensus 319 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (942)
|+|++|..+|.++++. .+..+..+++++|++|+..|+++.|+.+|+++++..|++.+++..+|.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999986 6789
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 474 (942)
|..++.++++..|.+..+|+.++.++..+|+..++.+|..++.++...+..+++++++++|..++..|++.+|..+|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999888888899999999999999999999999999999
Q ss_pred hhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 002286 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (942)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (942)
+.........+ .......+..|++|++++..++++.|.+.|..++..
T Consensus 479 ~~~~~~~~n~d---------------------------------e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVANKD---------------------------------EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhcCcc---------------------------------ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 88421000000 001234678999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCC-CchhHHHh
Q 002286 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 633 (942)
Q Consensus 555 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 633 (942)
+|.+.++++++|.+....++..+|..+++.++..+..+|.++..+|.+|++..+|..|..-|+.+++.... +|.|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988875543 59999999
Q ss_pred hhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 002286 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (942)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (942)
|||+ |+...+...++++.+++.+++|++.|.++|+.+|.|.+|.+|+|.+++..|++.+|+++|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9999 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+++|+|+||||+.+|+|..||++|+.++++|...+++.++.+||++|+..|++.+|+.++.+++++.|.++.+.||+|++
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002286 794 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE-EQQ 872 (942)
Q Consensus 794 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~ 872 (942)
+++.+..+++..++|++++..++.+|+.|+++|.+|+..++. +|+++.+.+++++|+++++++..|..+++++ |++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998744 7999999999999999999999998887665 555
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
Q 002286 873 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKARIFY 929 (942)
Q Consensus 873 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (942)
+++|+ +++++.++.+|++|++||++..++..++|++|.+...+..+.|-+..+.|+.
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~ 896 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKK 896 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhh
Confidence 54444 5566667778899999999999999999988888888888888888888875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=535.05 Aligned_cols=703 Identities=21% Similarity=0.236 Sum_probs=463.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHH
Q 002286 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEE 108 (942)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~ 108 (942)
+..++...|.....|+.+|..++..|++++|+.++++++..+|. ...++..+|.++...|...
T Consensus 148 ~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~-------- 210 (899)
T TIGR02917 148 YEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG---------NVDALLLKGDLLLSLGNIE-------- 210 (899)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHhcCCHH--------
Confidence 33344455666667777777777777777777777766655442 2335555666666665544
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
+|+..|++++..+|.++.+++.++.++...|++++|...++.+++..|+++.+++..|.+++..|++++|+..|+++
T Consensus 211 ---~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 211 ---LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred ---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+..+|+. ...++.+|.++...|++++|...|.+++...|.+..++..++.++...|+ +++|+..+.+++..+|.++
T Consensus 288 l~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 363 (899)
T TIGR02917 288 LKSAPEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDP 363 (899)
T ss_pred HHhCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCH
Confidence 5555444 22334444445555555555555555544444444444444444444444 4444444444444444444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC------------
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN------------ 336 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------------ 336 (942)
..+..++.++...|++++|..++++++... |..+..+..+|.++...|++++|+..+.+++...+
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 444444444444444444444444444322 22233333333333333333333333333322110
Q ss_pred -------------------CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002286 337 -------------------KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (942)
Q Consensus 337 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (942)
..|.....+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2345556667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 398 ~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.|++++..+|.+..++..++.++ ..|++++|+..+.+++...|. ....+..++.++...|++++|+..+++++.
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777 777777777777776655433 345566666666677777777777766665
Q ss_pred cchhhhhccccccchhhhhhhhhHh----hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (942)
..+... ............ ......+..... ..|.++.++..++.++...|++++|...|++++
T Consensus 596 ~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 596 AAPDSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred cCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 322100 000000000000 011111221111 456677888889999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHH
Q 002286 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (942)
Q Consensus 553 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 632 (942)
..+|++..++..++.++...|++++|..+++.+....|.++.++..+|.++...|++++|+..|++++...|+. ....
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 740 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAI 740 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHH
Confidence 99999888999999999999999999999999988888888899999999999999999999999998887764 4556
Q ss_pred hhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 002286 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (942)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (942)
.++.+ +... |++++|...+++++..+|+++.+++.+|.++...|++++|+.+|+++++..| +
T Consensus 741 ~l~~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~ 802 (899)
T TIGR02917 741 KLHRA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----D 802 (899)
T ss_pred HHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----C
Confidence 67777 7777 8999999999999999999999999999999999999999999999999887 7
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHH
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 792 (942)
++.++.++|+++...|+ .+|+.++++++.. .+.++.++..+|.+++..|++++|..+|+++++..|.++.++++++.
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 78899999999999999 8899999999988 45567788899999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 002286 793 AMQKFSA 799 (942)
Q Consensus 793 ~~~~~~~ 799 (942)
++...+.
T Consensus 880 ~~~~~g~ 886 (899)
T TIGR02917 880 ALLATGR 886 (899)
T ss_pred HHHHcCC
Confidence 7665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-54 Score=526.64 Aligned_cols=736 Identities=20% Similarity=0.212 Sum_probs=565.7
Q ss_pred CCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchh
Q 002286 20 DQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKI 99 (942)
Q Consensus 20 ~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 99 (942)
.+.++....+...++..|..++.|+.+|.+|+.+|++++|+..+++++...|+. ...+..++.+|...|+.
T Consensus 36 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~g~~ 106 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK---------NQVLPLLARAYLLQGKF 106 (899)
T ss_pred CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------hhhHHHHHHHHHHCCCH
Confidence 455667778888888899999999999999999999999999999998765532 22333444444444433
Q ss_pred hhhhh------------------------hhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 100 ETKQR------------------------EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155 (942)
Q Consensus 100 ~~~~~------------------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 155 (942)
+.... .+.|++++|...|++++..+|.++.+++.+|.++...|++++|+..+++++
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21100 123445589999999999999988999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 156 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
..+|.+..++..+|.++...|++++|+..|++++..+|.+ +.++..++.++...|++++|...++++++..|+++.+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (899)
T TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY 265 (899)
T ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999999999999999999999988 677888899999999999999999999998898888888
Q ss_pred HHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 002286 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (942)
Q Consensus 236 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 315 (942)
..|.++...|+ +++|+..+++++..+|.+..++..++.+++..|++++|...+.+++... |....++..++.++
T Consensus 266 ~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~ 339 (899)
T TIGR02917 266 LKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASIQ 339 (899)
T ss_pred HHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHH
Confidence 88888888888 8999999999999998888888888889999999999999998888754 45567788888888
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002286 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (942)
Q Consensus 316 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (942)
...|++++|+..+..++. ..|.....+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|
T Consensus 340 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Confidence 899999999998888886 45666777888888999999999999999999888888888888899999999999999
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (942)
Q Consensus 396 ~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 474 (942)
+..+.+++...|+.......++..+ ..|++++|+..+.+.....|. ++.++..+|.++...|++++|+..|+++
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-----NASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999998888888888888888888 888888888888887664332 5678888899999999999999999998
Q ss_pred hhcchhhhhccccccchhhhhhhhhHh----hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHH
Q 002286 475 LGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550 (942)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (942)
+...+.... ........... ......+..+.. ..|.+..++..++.++...|++++|...+.+
T Consensus 492 ~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 492 LSIEPDFFP-------AAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HhhCCCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 874331100 00000000000 011122222221 3455667777777777777777777777777
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhH
Q 002286 551 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (942)
Q Consensus 551 ~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 630 (942)
++..+|.+...+..++.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..|++++...|. +..+
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 637 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALA 637 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777776665 4556
Q ss_pred HHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 002286 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 710 (942)
Q Consensus 631 ~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 710 (942)
+..+|.+ |... |++++|+..|++++..+|++..++..++.++...|++++|+.+++.+.+..|
T Consensus 638 ~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---- 700 (899)
T TIGR02917 638 LLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP---- 700 (899)
T ss_pred HHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc----
Confidence 6667776 6666 7777777777777777777777777777777777777777777777777665
Q ss_pred CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhH
Q 002286 711 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (942)
Q Consensus 711 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 790 (942)
.++.++..+|.++...|++++|+..|+.++...|.+ .++..++.++...|++++|.+.+++++...|+++.+++++
T Consensus 701 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 776 (899)
T TIGR02917 701 -KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL 776 (899)
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 566777777777777777777777777777764332 5666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 002286 791 GVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (942)
Q Consensus 791 a~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 833 (942)
|.++... +..++|+.+|.++....
T Consensus 777 a~~~~~~-------------------g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 777 AELYLAQ-------------------KDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHC-------------------cCHHHHHHHHHHHHHhC
Confidence 7764433 44566777887776643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=444.93 Aligned_cols=652 Identities=14% Similarity=0.117 Sum_probs=535.5
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHH
Q 002286 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (942)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~ 116 (942)
+.+...++..+.....+++.+.|.+.|.+++..+|+ ...++..++.+++..|+.+ +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---------NPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 445667899999999999999999999999988773 3667888899998888877 99999
Q ss_pred HHHHhhcCCCCcchH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCChH
Q 002286 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~g~~~ 179 (942)
++++.+.+|+++.++ +.+|.++...|++++|+..|++++..+|.+.. +......+....|+++
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 66788999999999999999999999888764 2223333344569999
Q ss_pred HHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-------------
Q 002286 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------- 246 (942)
+|+..|++++..+|++ ..+++.+|.++...|++++|+..+++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987655432221111110111111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHH
Q 002286 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (942)
Q Consensus 247 ----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (942)
......|...+.+.....++.......+|..+...|++++|+..+++++... |.++.++..+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 1113344444444433322222233456888999999999999999999865 667899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002286 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (942)
Q Consensus 323 ~A~~~~~~a~~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (942)
+|+.+|+++++..+..+.. ......+|.++...|++++|+..|++++..+|++..++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999854433221 11224558889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHH
Q 002286 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG----EEVPIEVLNNIGVIHFEKGEFESA 467 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 467 (942)
+++|+..|+++++.+|++..++..++.++..+++++|+.+++.+....+... .......+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999955688999988876543322110 011234567789999999999999
Q ss_pred HHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHH
Q 002286 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (942)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (942)
+..|++++. ..|.++.+++.+|.++...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 6788899999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC----------hhHHHHhhhhhccccchHHHHHHHH
Q 002286 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 617 (942)
Q Consensus 548 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (942)
+++++..+|+++.+++.++..+...+++++|+..++++.....+. ......++..+...|++++|+..++
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998764332111 1123456888899999999999987
Q ss_pred HhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002286 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (942)
Q Consensus 618 ~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 697 (942)
..|. +...+..+|.+ |... |++++|+..|++++..+|+++.++.+++.++...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444 55667889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC----CHHHHHHHHHHHHHcccHHHHHHHH
Q 002286 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 773 (942)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 773 (942)
+++++...| +++.++..+|.++...|++++|+..|+.++...+..+ ++.++..+|+++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998877 7889999999999999999999999999999865433 2456777899999999999999999
Q ss_pred HHHHH
Q 002286 774 LRAIH 778 (942)
Q Consensus 774 ~~al~ 778 (942)
++++.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99986
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=442.72 Aligned_cols=622 Identities=17% Similarity=0.089 Sum_probs=506.4
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...+...+.++...++.+ .|...+.+++.++|+++.++..++.+++..|++++|...++++++.+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 445666677777776665 999999999999999999999999999999999999999999999999998
Q ss_pred HHH----------------HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh
Q 002286 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (942)
Q Consensus 163 ~~~----------------~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (942)
.+. +.+|.++...|++++|+..|++++..+|............+....|++++|+..|+++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678889999999999999999999988873322222333344569999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----
Q 002286 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (942)
Q Consensus 227 ~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~---- 302 (942)
+|+++.++..+|.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876544332211111111122223333333333322221111
Q ss_pred -------------chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHH
Q 002286 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (942)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (942)
+.......+|.++...|++++|+..|+++++ ..|....++..+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111223568899999999999999999998 567888999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHH
Q 002286 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (942)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (942)
+.+|++.. ....+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99997642 2235588889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccC
Q 002286 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (942)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (942)
++...|. +..++..++.++. .+++++|+.+++......+. . ....
T Consensus 411 aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-~----------------------~~~~------ 455 (1157)
T PRK11447 411 ALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-S----------------------IDDI------ 455 (1157)
T ss_pred HHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-H----------------------HHHH------
Confidence 9988655 4677888888875 56789999888765432100 0 0000
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|++++|+..+++++..+|+++.
T Consensus 456 -----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 456 -----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred -----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 001123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhccCCCCchh---------HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH
Q 002286 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (942)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (942)
+++.++.++...|++++|+..++++.......... ..+.+++. +... |++++|+.+++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~ 597 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH
Confidence 99999999999999999999999865432221111 12234555 5555 99999998876
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
.+|.++.++..+|.++...|++++|+..|+++++..| +++.+++++|.+|...|++++|+..|+.++..
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999999999998 78999999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 746 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
.+.++.++..+|.++...|++++|.+.|++++...|+++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 4556788999999999999999999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=367.06 Aligned_cols=583 Identities=16% Similarity=0.164 Sum_probs=512.9
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
++.|...|..+++..|++...+++.|.+.+..|+|..|+.+|..++..+|.. +...+++|.|+.+.|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999965 577899999999999999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
++++|.+ ..++..+|.+-.... .+..+...+.++...+|.||.++..|+..++..|+ |..+..+...++....
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 777787877766554 57789999999999999999999999999999999 9999999999988764
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 002286 266 YC---AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (942)
Q Consensus 266 ~~---~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 342 (942)
.. ...++.+|.+|..+|++++|..+|..++...+.+ ..-.++.+|..+...|+++.|..+|++++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 44 3569999999999999999999999999876444 356788999999999999999999999998 567888
Q ss_pred hhhhcHHHHHHHcC----ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHH
Q 002286 343 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 413 (942)
Q Consensus 343 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 413 (942)
.....+|.+|...+ ..+.|..++.+++...|.+.++|..++.++....-+.. +..|..++.. .+--+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 88889999998886 67889999999999999999999999999877655544 9999988843 34567889
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccc
Q 002286 414 IDLGELL-ISSDTGAALDAFKTARTLLKKA-----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (942)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (942)
.++|.+. ..|++.+|...|..+....... +......+.++++.++-..++++.|...|...+.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 9999999999999999883321 1123445789999999999999999999999998
Q ss_pred ccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002286 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567 (942)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 567 (942)
.+|.....+..+|.+....++..+|..+++.++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 678899999999988888899999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhhcC--CChhHHHHhhhhhccc------------cchHHHHHHHHHhhccCCCCchhHHHh
Q 002286 568 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 633 (942)
Q Consensus 568 ~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 633 (942)
++.....+..|.+-|...++.-. .++.+...||++++.. +.+++|+..|.++++.+|. +.|+..+
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999998877776543 3455666778876542 3478999999999999998 8899999
Q ss_pred hhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 002286 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (942)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (942)
+|.+ +... |++.+|..+|.++.+...+++.+|.++|.||..+|+|..|++.|+.+....-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 9988 7777 999999999999999888899999999999999999999999999999887422 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcc
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g 764 (942)
+.++..||.+++..|.+.+|.+....++.. .+.++.+.+++|.+..+.+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHH
Confidence 999999999999999999999999999999 4566778899988877643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=378.57 Aligned_cols=463 Identities=19% Similarity=0.253 Sum_probs=366.9
Q ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHH
Q 002286 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (942)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~ 116 (942)
+......+.+|--.++.|+|.+|++.....-..+|.. ...+..++.++++..+.+ .....
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~---------~~~llll~ai~~q~~r~d-----------~s~a~ 104 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTN---------TERLLLLSAIFFQGSRLD-----------KSSAG 104 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCc---------ccceeeehhhhhcccchh-----------hhhhh
Confidence 3344456777777788888888888777766655422 223445566666655544 45555
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 196 (942)
-..+++.+|.-.+++-++|.++-..|++++|+..|+.+++..|++.++|..+|.++...|+...|..+|..+++++|..
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l- 183 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL- 183 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-
Confidence 5567777777777777788888888888888888888888888888888888888888888888888888888888877
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
..++..+|..+-..|+..+|..+|.++++..|....+|..||.++..+|+ ...|+..|+++++++|..+
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge---i~~aiq~y~eAvkldP~f~-------- 252 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE---IWLAIQHYEEAVKLDPNFL-------- 252 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcch---HHHHHHHHHHhhcCCCcch--------
Confidence 55677777777778888888888888888888777778888888777777 7778888888877777766
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
.+|+++|.+|-..+.++.|+..|.+++. ..|....++-++|.+|+.+|
T Consensus 253 -----------------------------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG 300 (966)
T KOG4626|consen 253 -----------------------------DAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQG 300 (966)
T ss_pred -----------------------------HHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccc
Confidence 5566666777777777777777777776 56777778888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHH
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (942)
..+-|+.+|+++++..|+.++++.++|..+...|+..+|..+|.+++.+.|+.+++..++|.++ +.|.++.|...|.++
T Consensus 301 ~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888 888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCC
Q 002286 436 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515 (942)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (942)
+..+|. -...++++|.+|.++|++++|+.+|+.++.
T Consensus 381 l~v~p~-----~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--------------------------------------- 416 (966)
T KOG4626|consen 381 LEVFPE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALR--------------------------------------- 416 (966)
T ss_pred HhhChh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHh---------------------------------------
Confidence 887776 367888888888888999999999998888
Q ss_pred CCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH
Q 002286 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595 (942)
Q Consensus 516 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 595 (942)
+.|....++.++|..|..+|+.+.|+..|.+++..+|..++++.+||.++...|+..+|+..|+.++++.|+.+++
T Consensus 417 ----I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 417 ----IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred ----cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 6788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccchHH
Q 002286 596 LSMLGDLELKNDDWVK 611 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~ 611 (942)
+.++..++.-..+|..
T Consensus 493 ~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 493 YCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHhcccc
Confidence 8888887665554433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=371.26 Aligned_cols=460 Identities=20% Similarity=0.254 Sum_probs=325.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
.......++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ...+-.+|.+
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~aN~ 125 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLANI 125 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHHHH
Confidence 334455566666666666666666666666666666666666666666666666666666666666665 5555666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
+...|+++.|+..|+.++++.|++.++|..+|.++...|+ ...|..+|..+++++|+..
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~------------------ 184 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLY------------------ 184 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchh------------------
Confidence 6666666666666666666666666666666666666665 5555555555555555433
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
-+...+|..+-..|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..|+
T Consensus 185 -------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 185 -------------------CARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred -------------------hhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 2233344444455555555555555444 334444444445554444455444555555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCC
Q 002286 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 446 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 446 (942)
++++++|+..+++.+||.+|...+.++.|+..|.+++...|++
T Consensus 243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------------------------------------- 285 (966)
T KOG4626|consen 243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------------------------------------- 285 (966)
T ss_pred HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-------------------------------------
Confidence 4444444444444444444444444444444444444444443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchh
Q 002286 447 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526 (942)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (942)
..++-++|.+|+.+|..+-|+..|++++. ..|..+.
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F~~ 321 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNFPD 321 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCchH
Confidence 45566667777777777777777777777 5677888
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccc
Q 002286 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (942)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 606 (942)
++.++|.++...|+..+|..+|.+++..+|+++++..+||.++..+|.+++|..+|.+++..+|....+..++|.+|..+
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 88888888888888889999999999999999999999999999999999999999999999998888899999998889
Q ss_pred cchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002286 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (942)
Q Consensus 607 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 686 (942)
|++++|+..|+.++++.|. -..++..+|+. |... |+.+.|++.|.+++..+|....+..+||.+|.
T Consensus 402 gnl~~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred ccHHHHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 9999999999999888876 66778889999 8888 99999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCH
Q 002286 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 730 (942)
Q Consensus 687 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~ 730 (942)
..|+..+|+..|+.++...| +.|+++.|+++++.-..++
T Consensus 468 DsGni~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred ccCCcHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 99999999999999999998 8899999999887655433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=376.97 Aligned_cols=663 Identities=11% Similarity=-0.004 Sum_probs=518.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+..|..+...|++++|+..|+.++..+|+ ...++..|+.+|+..|+.. +|+..++++
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------n~~~~~~LA~~yl~~g~~~-----------~A~~~~~kA 104 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD---------NIPLTLYLAEAYRHFGHDD-----------RARLLLEDQ 104 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHH-----------HHHHHHHHH
Confidence 46788888888899999999999999998874 3667899999999999988 999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHhcCChHHHHHHHHHHHHhC
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~~l~~~ 192 (942)
++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+...+++. .+.+..+
T Consensus 105 v~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~ 178 (987)
T PRK09782 105 LKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAAS 178 (987)
T ss_pred HhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCC
Confidence 99999888888777666 999999999999999999999999999998 666655555554 3333323
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-ccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
|.. ..+.+.++.+|..+|++++|+..+.++++..|.+...+..|+.+|... ++ +.+...+...+ ..++.++
T Consensus 179 ~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~l---k~d~~l~ 250 (987)
T PRK09782 179 PEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGI---FTDPQSR 250 (987)
T ss_pred CCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhc---ccCHHHH
Confidence 333 556777799999999999999999999999999999999999988873 43 66666655422 3788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
..++..+...|+.++|...+...-......|......+.+++..... ..|...|.+= ..++...+...+...
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHHH
Confidence 99999999999999999999997766666677666777776654432 2333333331 224445556667889
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~ 430 (942)
+...++++.+..+ +...|.++. ...........+.+.++...+....+..|.+......++... ..|+.++|..
T Consensus 323 ~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 323 LLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999955533 456677664 222222233457888888889988888899999999999999 9999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcc--hhhhhccccccchhhhhhhhhHhhhhh
Q 002286 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGDG--IWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
.|+.+... +. ....+..+...++.++...+. ...++..-..+-... .+...... ..
T Consensus 398 ~~~~~~~~-~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~ 458 (987)
T PRK09782 398 LLLQRYPF-QG-DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG-----------------IA 458 (987)
T ss_pred HHHHhcCC-Cc-ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh-----------------hh
Confidence 99998875 22 122245666688999988877 333333321111000 00000000 00
Q ss_pred hhhhhhccCCCCCCCCCc--chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 506 QLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..+..+ .......|. .+.+++++|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..++
T Consensus 459 ~~~~~~---~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 459 DNCPAI---VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhHHHH---HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 000000 001114466 88999999999988 899999999999999999864 46667788889999999999999
Q ss_pred HHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHH
Q 002286 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (942)
Q Consensus 584 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (942)
++....|. ...+..+|.++...|++++|...|.+++...|.. ......++.. .... |++++|+..
T Consensus 534 ka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~-l~~~------------Gr~~eAl~~ 598 (987)
T PRK09782 534 KISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQ-RYIP------------GQPELALND 598 (987)
T ss_pred HHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHH-HHhC------------CCHHHHHHH
Confidence 98776555 4567889999999999999999999999987663 3333333333 3334 899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
|+++++.+|+ ..++..+|.++.+.|++++|+..|++++...| +++.++.++|.++...|++++|+..|+++++.
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999996 88999999999999999999999999999998 88999999999999999999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 744 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
.|.++.+++++|.++...|++++|+..|++++.+.|++..+.+-.+.+.+..
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 5677899999999999999999999999999999999999999888865443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=353.21 Aligned_cols=652 Identities=12% Similarity=0.021 Sum_probs=506.6
Q ss_pred CCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh
Q 002286 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (942)
Q Consensus 23 p~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~ 102 (942)
.+....+..+++.+|.+..+++.+|..|...|++++|+..+++++..+|.. ...+..|+.+ +
T Consensus 61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n---------~~~~~~La~i----~----- 122 (987)
T PRK09782 61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD---------ARLERSLAAI----P----- 122 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHh----c-----
Confidence 445667777888899999999999999999999999999999999988732 2233334443 3
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 174 (942)
++.+|+..|++++..+|.+..+++.++.. |.+.+...+|+. .+.+..+|......+.++.+|..
T Consensus 123 ------~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 123 ------VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ------cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHH
Confidence 34499999999999999999999999998 666655555555 33333344455567777999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHH
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A 253 (942)
+|+|++|+..+.++++..|.+ ...+..++.+|.. +++ +.|..++...++ .++.++..++..+...|+ .++|
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~~A 266 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KARL 266 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HHHH
Confidence 999999999999999999999 6768889999988 577 888888665333 788999999999999999 6777
Q ss_pred HHHHHHH---HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 254 MEKMQRA---FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (942)
Q Consensus 254 ~~~~~~~---~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (942)
...+.+. ....|.+..-++.++...... ..+..-+.+ ...+..-..+......+...++++-+..+.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 336 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKLL-- 336 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHHh--
Confidence 6666554 334466665555555443221 111111111 011222344555677888888888555441
Q ss_pred HHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 002286 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD- 409 (942)
Q Consensus 331 a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~- 409 (942)
.. .|.... ....-......+.+.++........+..|.+...+..++....+.|+.++|...|+.+....++.
T Consensus 337 ~~-----~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 337 AT-----LPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred cC-----CCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 11 233322 11112223345788888888888888889999999999999999999999999999988753222
Q ss_pred --HHHHHHHHHHH-hcCC---HhHH----------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 002286 410 --AQAFIDLGELL-ISSD---TGAA----------------------LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 461 (942)
Q Consensus 410 --~~~~~~la~~~-~~~~---~~~A----------------------~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (942)
......++.++ ..+. ..++ ...+..+....+.......+.++.++|.++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 23444677776 4433 2222 23333333433321111267899999999988
Q ss_pred CCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCH
Q 002286 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 541 (942)
Q Consensus 462 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 541 (942)
+++.+|+..|.+++.. .|.. .....+|.++...|++
T Consensus 490 ~~~~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 490 TLPGVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDY 525 (987)
T ss_pred CCcHHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCH
Confidence 8999999999999873 3433 3466678888899999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhc
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (942)
++|+..|++++...|.. ..++.+|.++...|++++|..++++++..+|.+...+..++......|++++|+..|++++.
T Consensus 526 eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 526 ATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred HHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999987775654 56788999999999999999999999999999988887777777788999999999999999
Q ss_pred cCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002286 622 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (942)
Q Consensus 622 ~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (942)
..|. ..++..+|.+ +... |++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++
T Consensus 605 l~P~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 605 IAPS--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred hCCC--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9985 6677889988 8888 99999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 702 QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 702 ~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
++..| +++.+++++|.++..+|++++|+..|++++.. .+..+.+....|.+.....++..|.+.+.++...+|
T Consensus 670 L~l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 670 HKGLP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99998 88999999999999999999999999999998 556688999999999999999999999999999999
Q ss_pred CChhhHhhHHHH
Q 002286 782 SNYTLRFDAGVA 793 (942)
Q Consensus 782 ~~~~~~~~la~~ 793 (942)
... +....+-+
T Consensus 743 ~~~-a~~~~g~~ 753 (987)
T PRK09782 743 DSS-IGLRSGAM 753 (987)
T ss_pred cch-hccccchH
Confidence 876 55555554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=317.66 Aligned_cols=669 Identities=14% Similarity=0.065 Sum_probs=541.6
Q ss_pred hccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHH
Q 002286 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (942)
Q Consensus 35 ~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~ 114 (942)
..+++...+..+...|.+.|++++|..+|+.+......+ + ...+..+...+...+... .|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~-------~-~~~~~~ll~~~~~~~~~~-----------~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV-------D-EDAYVALFRLCEWKRAVE-----------EGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-------C-hhHHHHHHHHHhhCCCHH-----------HHH
Confidence 345566778888999999999999999999887643211 0 123344444455555444 888
Q ss_pred HHHHHHhhcCCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 115 ~~~~~a~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
.++..+++..+. +......+...|.+.|+.+.|...|+.+. +.+...|..+...+.+.|++++|+.+|.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999988877654 34455667778899999999999999874 34677899999999999999999999999987542
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 272 (942)
......+..+...+...++...+...+..+++... .+...+..+...|.+.|+ ++.|...|++.. ..+..+|+
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n 257 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWN 257 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhH
Confidence 22234566666777788999999999988877542 356678888899999999 999999998764 34668899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 352 (942)
.+...|...|++++|..++..+.... ..| +..++..+...+...|+.+.|.+++..+.+. ........+..+...|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g-~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELS-VDP-DLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-CCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHH
Confidence 99999999999999999999998754 223 4567888888999999999999999999864 2234567789999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH-hcCCHhHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAAL 429 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~-~~~~~~~A~ 429 (942)
.+.|++++|...|+.+. ..+..+|..+...|.+.|++++|+..|+++.... |+.. .+..+-..+ ..|+++.|.
T Consensus 334 ~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 99999999999999874 3456789999999999999999999999987654 6554 444445566 999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhh
Q 002286 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (942)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (942)
..+..+.+. +...+..+++.+...|.+.|++++|...|++...
T Consensus 410 ~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 410 KLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 999887653 4445678999999999999999999999988643
Q ss_pred hhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 002286 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (942)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 589 (942)
.+..+|..+...|...|+.++|..+|+++....+.+..++..+...+...|+.+.+...+..+++..
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 2456788899999999999999999999987656666788888888999999999999999988875
Q ss_pred -CCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 590 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 590 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
..+..+...+...|.+.|+.++|...|+.+ ..+..++..+... |... |+.++|+++|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 345567778899999999999999999986 3477888889888 9988 99999999999998
Q ss_pred hcCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 669 VQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 669 ~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
.... .|...+..+...+.+.|.+++|..+|+.+.+..+-. .+...|..+..++.+.|++++|.+.++++ |..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 8652 256667888888999999999999999999655311 35678999999999999999999998875 456
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 002286 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 827 (942)
Q Consensus 748 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~ 827 (942)
+++.++..|..++...|+.+.+....++++++.|+++..+..++.+|...+. .++|.++.+
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~-------------------~~~a~~vr~ 715 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK-------------------WDEVARVRK 715 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC-------------------hHHHHHHHH
Confidence 7888999999999999999999999999999999999988888887654433 455666666
Q ss_pred HHhhCC
Q 002286 828 HLSAAS 833 (942)
Q Consensus 828 ~l~~~~ 833 (942)
.+...+
T Consensus 716 ~M~~~g 721 (857)
T PLN03077 716 TMRENG 721 (857)
T ss_pred HHHHcC
Confidence 665554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=317.54 Aligned_cols=445 Identities=17% Similarity=0.131 Sum_probs=358.4
Q ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002286 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (942)
Q Consensus 84 ~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 163 (942)
..+..+|..|+..|+.. +|+..|++++...|+ +..+..+|.+|...|++++|+..+.++++.+|++..
T Consensus 128 ~~~k~~G~~~~~~~~~~-----------~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~ 195 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFN-----------KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH
Confidence 34556666666666555 999999999999995 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+++.+|.++...|++++|+..|..+...++.........+... . ...+......+++..|.+...+..++..+..
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL-L----KKFAESKAKEILETKPENLPSVTFVGNYLQS 270 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH-H----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999888777655422211111111 1 1345566677777888877676666665432
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCC
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 320 (942)
.. ...+...+......+|.....+..++.... ..+.|++|+..|+.++......|....++..+|.++...|+
T Consensus 271 ~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~ 346 (615)
T TIGR00990 271 FR----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK 346 (615)
T ss_pred cc----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Confidence 21 222233344445556665555555554433 35789999999999998766667888899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
+++|+..|++++. .+|....+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+
T Consensus 347 ~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 347 HLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998 5788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcch
Q 002286 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 479 (942)
+++.++|++..++..+|.++ ..|++++|+..|++++...|. .+.+++.+|.++...|++++|+..|++++...+
T Consensus 424 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999 999999999999999987665 588999999999999999999999999998532
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH-HHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
... ........+...+. ++...|++++|..++++++..+|++
T Consensus 499 ~~~-------------------------------------~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 499 ETK-------------------------------------PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred ccc-------------------------------------cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 100 00001112233333 3444699999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
..++..+|.++...|++++|+.+|++++++.+...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 889999999999999999999999999988776544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=316.72 Aligned_cols=436 Identities=15% Similarity=0.129 Sum_probs=347.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..+..+|..++..|+|++|+..|++++...|+ +..+..+|.++...|++++|+..+.++++.+|++ ..+++.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 34667899999999999999999999999995 7789999999999999999999999999999998 777899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~ 288 (942)
.+|++++|+..|..++..++.+......+..... ...+...+...+...|.+...+..++..+... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998887776654433222211111 22344556666777777766666666644222 111111
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 289 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
..+.... ...+.....+..++..+ ...+++++|+..|++++......|....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111 12233334455555443 33578999999999999743335677788999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (942)
++++..+|++..++..+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999987665
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc
Q 002286 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (942)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (942)
+...+..+|.++...|++++|+..|++++. ..|..
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 577888999999999999999999999988 56778
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH------HHHHHHH-HHHcCChhHHHHHHHHHHhhcCCChhHHH
Q 002286 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALS 597 (942)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 597 (942)
+.++..+|.++...|++++|+..|++++...|..... +...+.. +...|++++|..++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999988865322 2222333 33468999999999999999999998999
Q ss_pred HhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 598 MLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
.+|.++...|++++|+..|++++++.+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=279.12 Aligned_cols=674 Identities=17% Similarity=0.155 Sum_probs=411.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHH
Q 002286 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (942)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~ 119 (942)
+.-.+..|...+.+|++++|+.++.+++..+|. ...++..||.+|-.+|+.+ ++...+-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 445677777778888888888888888777662 2456777888887777766 77777777
Q ss_pred HhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---
Q 002286 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--- 196 (942)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--- 196 (942)
|-.++|++.+.|..++....++|++++|+-+|.++++.+|.+....+..+.++.+.|++..|...|.+++...|...
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 77788888888888888888888888888888888888888888888888888888888888888888888877321
Q ss_pred -hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh--CCC-----
Q 002286 197 -GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI--YPY----- 266 (942)
Q Consensus 197 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~----- 266 (942)
.+.-...+..+...++-+.|...++.++.... ...+-+..++.+++.... ++.|.......... .++
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 12223356667777777778887777776322 223345566666666655 66666555443330 000
Q ss_pred ---------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHH
Q 002286 267 ---------------------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (942)
Q Consensus 267 ---------------------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (942)
+..+ ..+..++......+....+..............++.++.++.++...|++.+|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 1111 122333333333333333333333222223444566666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
.+|..+... ....+...|+.+|.+|...|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.+.....-
T Consensus 435 ~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 666666642 112224456666666666666666666666666666666666666666666666666666666665422
Q ss_pred CcC---------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHH
Q 002286 406 DPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN--IGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 406 ~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~ 473 (942)
++. ..........++ ..|+.++=+......+..+....... +..... .+..-...+.+.+-......
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f-~~~~k~r~~~~~~~~~~~~~~~~~~~~~ 591 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIF-PRNKKKRRRAIAGTTSKRYSELLKQIIR 591 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHhhccccccccchhHHHHHH
Confidence 211 122333444455 55555553333333322211100000 000000 00000001111111111111
Q ss_pred HhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcch----hHHHHHHHHHhhcCCHHHHHHHHH
Q 002286 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV----TVLFNLARLLEQIHDTVAASVLYR 549 (942)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~ 549 (942)
+..........+... .+... ........... .....+..++.+.+++.+|..+..
T Consensus 592 ~~~k~~~~~~~~~~l--------------~d~~~-------~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 592 AREKATDDNVMEKAL--------------SDGTE-------FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhccCchHHhhhcc--------------cchhh-------hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 111110000000000 00000 00000111122 344456778889999999999999
Q ss_pred HHHHhCC----Cc-H-HHHHHHHHHHHHcCChhHHHHHHHHHHhh-----cCCChhHHHHhhhhhccccchHHHHHHHHH
Q 002286 550 LILFKYQ----DY-V-DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (942)
Q Consensus 550 ~~l~~~p----~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (942)
.++...- .. . ...+....+....+++..|..+++.++.. +|..+..|...-......++-.--...+..
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887432 11 1 22333445567789999999999999988 566666666444455556665555566666
Q ss_pred hhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---------
Q 002286 619 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--------- 689 (942)
Q Consensus 619 ~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g--------- 689 (942)
+....++.+.......|.. .+.. +.+..|+..|-++...+|++|..-..+|..+.+..
T Consensus 731 ~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh 797 (895)
T KOG2076|consen 731 LLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRH 797 (895)
T ss_pred HhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6666666556555666777 7777 89999999999999999999998888887776532
Q ss_pred -CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--------CC--HHHHHHHHH
Q 002286 690 -QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--------TD--AQILLYLAR 758 (942)
Q Consensus 690 -~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~--~~~~~~l~~ 758 (942)
..-+++.++.+..+..... ...++.+|+|.+|...|-..-|+.+|+++|...|.+ -+ -.+.++|..
T Consensus 798 ~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~L 874 (895)
T KOG2076|consen 798 AQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHL 874 (895)
T ss_pred HHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhh
Confidence 3456677777766655311 367899999999999999999999999999975332 12 678899999
Q ss_pred HHHHcccHHHHHHHHHHHH
Q 002286 759 THYEAEQWQDCKKSLLRAI 777 (942)
Q Consensus 759 ~~~~~g~~~~A~~~~~~al 777 (942)
+|...|+..-|.+++.+-+
T Consensus 875 IY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 875 IYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hhccCCcHHHHHHHHHhhc
Confidence 9999999999999987754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-30 Score=305.75 Aligned_cols=640 Identities=14% Similarity=0.054 Sum_probs=529.9
Q ss_pred ChhHHHHHHHhc--cCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh
Q 002286 25 DASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (942)
Q Consensus 25 ~~~~~~~~l~~~--~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~ 102 (942)
++..+.+.+... +.+...+..+...+...+.++.+..++..++...+.. ...+.+.|...|.+.|...
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~n~li~~~~~~g~~~-- 138 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL--------GVRLGNAMLSMFVRFGELV-- 138 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHhCCChH--
Confidence 444444444442 3556677888888899999999999999877654321 1335677788888888877
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHH
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSD 180 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~ 180 (942)
.|...|+++.. .+..+|..+...|.+.|++++|+.+|+++... .| +...+..+...+...+++..
T Consensus 139 ---------~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 139 ---------HAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred ---------HHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccchhh
Confidence 89999998753 47789999999999999999999999999864 34 45556666667778899999
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+.+++..+++........++..+..+|.+.|+++.|...|+++.. .+...|..+...+.+.|+ +.+|+..|.+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M 279 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTM 279 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 999999998876544466788899999999999999999998643 356779999999999999 99999999999
Q ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 002286 261 FEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (942)
Q Consensus 261 ~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 339 (942)
.... ..+..++..+...+...|+.+.+.+++..+.... ...+..++..+...|...|++++|...|+.+..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------ 351 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------ 351 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------
Confidence 8753 3456788888889999999999999999988754 233568899999999999999999999998652
Q ss_pred CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Q 002286 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDL 416 (942)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 416 (942)
.....|..+...|.+.|++++|+..|+.+.... |+ ..++..+...+...|+++.|...+..+.+.. ..+..++..+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 245678999999999999999999999987654 54 4456666678899999999999999999875 3467788899
Q ss_pred HHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhh
Q 002286 417 GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495 (942)
Q Consensus 417 a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 495 (942)
...| ..|++++|...|+++.+ .+...|+.+...+...|+.++|+..|.++...
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------ 484 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------ 484 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------------------
Confidence 9999 99999999999987532 24568899999999999999999999999752
Q ss_pred hhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCC
Q 002286 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~ 574 (942)
..| +..++..+...+...|+.+.+.+++..+++... .+...+..+..+|.+.|+
T Consensus 485 ------------------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 485 ------------------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred ------------------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 334 555666677788899999999999999988542 345667788899999999
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHH
Q 002286 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 654 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~ 654 (942)
.++|...|+.. +.+..+|..+...|.+.|+.++|+..|+++...+..++..++..+... |...
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------ 602 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------ 602 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------
Confidence 99999999886 667889999999999999999999999999987777777777777777 8887
Q ss_pred HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 002286 655 THLEKAKELYTRVIVQH--TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 732 (942)
|..++|..+|+.+.+.. ..+...+..+..+|.+.|++++|.++++++. .. .++.+|..+-..+...|+.+.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHH
Confidence 99999999999998543 2356789999999999999999999999873 22 467889999888888999999
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 733 A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
|....+++++. .|.++..+..++.+|...|++++|.+..+.+...
T Consensus 676 ~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 676 GELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999998 5667888999999999999999999999887664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-28 Score=245.39 Aligned_cols=599 Identities=16% Similarity=0.130 Sum_probs=495.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
-++..+|..++....+.+|.+|..|+.-|.+--..|++..|..+..+..+..|.+.+.|+.-++ ....+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 3577899999999999999999999999999999999999999998888888888777766443 233344444445
Q ss_pred HHHHhCCCCchhhHhh---------------------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 187 RALQVHPSCPGAIRLG---------------------------IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~---------------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
+++...|.+ ..+|+. +=..-..+.+.+.|+..+.++++.-|.+.+.|..++.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 555555544 222222 2223345566777888999999999988888887776
Q ss_pred HHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHHh
Q 002286 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 317 (942)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~ 317 (942)
+. .|+.|...+.++-+.-|.++.+|..-+.+-...|+.+...++..+.+..... ...+-+.|+.-+..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 53 2888999999999999999999999999999999999999999988754322 23455778888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002286 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (942)
Q Consensus 318 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (942)
.|..-.+..+....+...-...+.-..|..-++.+.+.+.++-|...|..+++.+|....+|...+..-...|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 88888888888877765545667777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 398 ~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.+++++...|.....|...+..+ ..||...|..++..+.+..|. +.++|..-..+.+...+++.|..+|.++..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999999999999999999999 899999999999999987665 578898888899999999999999999987
Q ss_pred cchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
.++ ...+++.-+.+...+++.++|+.+++++++..|
T Consensus 647 ~sg--------------------------------------------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 ISG--------------------------------------------TERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cCC--------------------------------------------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 432 667888888899999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhh
Q 002286 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 636 (942)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 636 (942)
+....|+.+|.++...++.+.|...|...++.-|..+..|..++.+-.+.|....|...++++.-.+|+ +...++....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988888 4433333332
Q ss_pred HHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 002286 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (942)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (942)
. -+.. |+.+.|.....++|+..|++...|..-..+.-+-++-..+++.+.+ .. .+|.+
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk----ce-----~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK----CE-----HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh----cc-----CCchh
Confidence 2 2223 9999999999999999999988877766666666665444444443 33 68899
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
+...|..+....++++|.++|.++++..|+..| ++.++-+.+...|.-++-.+.+.+.....|.+...|-.+.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD--~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD--AWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccch--HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999999999999999999999666655 5555557788899989999999999999999877665443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-29 Score=263.05 Aligned_cols=647 Identities=15% Similarity=0.105 Sum_probs=460.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
++++|..++..+++.+|.++.+|+.+|.+|-++|+.+++..++-.+-.++|++...|..++....++|++..|.-+|.++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H-HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----V-EALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~-~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
++.+|.+ ....+..+.+|.++|+...|...|.+++...|.. . ......+..+...++ -+.|++.++.++..
T Consensus 234 I~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 234 IQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALSK 309 (895)
T ss_pred HhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhh
Confidence 9999999 6667889999999999999999999999999931 1 122333555666666 68889999988883
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------c---CCCCCchhH-HHHHHHHHH
Q 002286 264 --YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------V---TNHGPTKSH-SYYNLARSY 315 (942)
Q Consensus 264 --~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~----------------------~---~~~~~~~~~-~~~~la~~~ 315 (942)
+-.....+..++.++.....++.+......... . +...+.... ....++.+.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 333446788999999999999998888776654 0 111111122 255566666
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHH
Q 002286 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEK 394 (942)
Q Consensus 316 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~ 394 (942)
...+...+++..+..--.. ...+.+..++.++..+...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++.
T Consensus 390 L~~~e~~e~ll~~l~~~n~--~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNV--WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred ccccchHHHHHHHHHHhcC--ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 6666666666665433221 24566777999999999999999999999999887654 46799999999999999999
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
|+..|.+++...|++.++.+.|+.++ .+|++++|++.+.....-. +.........+......+++..|+.++=+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999 9999999999988755211 111112234677888999999999998665
Q ss_pred HHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHH
Q 002286 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (942)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (942)
.-...+.......++-.... -.+.. .......+........+...-...++.........
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~------------------k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 607 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNK------------------KKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS 607 (895)
T ss_pred HHHHHHHHHHHHHHhcchHH------------------HHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhccc
Confidence 55555543211111100000 00000 00000123334444455544444444322222111
Q ss_pred HH-----HHhCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcC--CChh----HHHHhhhhhccccchHHHHH
Q 002286 550 LI-----LFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYPN----ALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 550 ~~-----l~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~----~~~~l~~~~~~~g~~~~A~~ 614 (942)
.. .....-. .+....+...+.+.+.+.+|..+...++...- .++. ..+....+-+..+++..|..
T Consensus 608 d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 608 DGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred chhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 11 1111111 23445566778899999999999999887642 2222 33334445577899999999
Q ss_pred HHHHhhccCCC-CchhHHHhhhhH--H-HHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC
Q 002286 615 TFRAASDATDG-KDSYATLSLGNW--N-YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKG 689 (942)
Q Consensus 615 ~~~~~~~~~~~-~~~~~~~~l~~~--~-y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g 689 (942)
.++.++....- .+++ ...+.++ . .... ++-.-=..++..++..+|++ +......|..+...+
T Consensus 688 ~lR~~i~~~~~~~~~~-q~~l~n~~~s~~~~~------------~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 688 YLRSVITQFQFYLDVY-QLNLWNLDFSYFSKY------------GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNA 754 (895)
T ss_pred HHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhccCccCCcceeeeechhHhhcc
Confidence 99998876211 1221 1112221 0 2222 44444555666677788887 555666788889999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh--cC--------HHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 002286 690 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ--GN--------FALAMKMYQNCLRKFYYNTDAQILLYLART 759 (942)
Q Consensus 690 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~--g~--------~~~A~~~~~~al~~~~~~~~~~~~~~l~~~ 759 (942)
.+.-|+..+-++....| ++|-+-+.+|-.+..+ ++ .-+++....+..+.-.....-++.|++|++
T Consensus 755 s~~~Al~~y~ra~~~~p-----d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRa 829 (895)
T KOG2076|consen 755 SFKHALQEYMRAFRQNP-----DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRA 829 (895)
T ss_pred chHHHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999998 6677766666554432 22 335555555544442122247899999999
Q ss_pred HHHcccHHHHHHHHHHHHHhCCCC------------hhhHhhHHHHHHHHHH
Q 002286 760 HYEAEQWQDCKKSLLRAIHLAPSN------------YTLRFDAGVAMQKFSA 799 (942)
Q Consensus 760 ~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~ 799 (942)
|...|-..-|..+|++++...|.+ -.+-||+.+||+.-|.
T Consensus 830 yh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn 881 (895)
T KOG2076|consen 830 YHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGN 881 (895)
T ss_pred HHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCc
Confidence 999999999999999999998743 3678899999887776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-28 Score=285.85 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=346.7
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
+.+++. .+..|-++....-...+....|+.++|+..+.++...+|....++..+|.++...|++.+|+..|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555 5566777777788888899999999999999999888888888999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
.+ +.++..+|.++...|++++|+..++++++.+|++.. +..+|.++...|+ +.+|+..++++++..|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 677889999999999999999999999999999999 9999999999998 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHhcCCCCCchh-
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFIF- 343 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~a~~~~~~~~~~~~- 343 (942)
++.++...+..+.|+..++++...+.. .+........+.+.... .+++ ++|+..++.++...+..|....
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999999888876641110 00001122223333322 2334 7889999998875444444322
Q ss_pred ---hhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHH
Q 002286 344 ---PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 415 (942)
Q Consensus 344 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~ 415 (942)
+.+.....+...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 222212344677999999999999998764322 244446899999999999999999999888766 355677
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcC--------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhc
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~--------~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 484 (942)
++.++ ..|++++|+..++++....|... .+. ...++..++.++...|++++|+..+++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 99999999999998887654210 011 134667788889999999999999999887
Q ss_pred cccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002286 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (942)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (942)
..|.+..++..+|.++...|++++|+..+++++..+|++...++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 567788899999999999999999999999999999999899999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcCCChhHHH
Q 002286 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (942)
Q Consensus 565 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 597 (942)
+|.++...|++++|...++++++..|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999887654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-26 Score=231.23 Aligned_cols=602 Identities=13% Similarity=0.097 Sum_probs=505.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHH
Q 002286 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112 (942)
Q Consensus 33 l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~ 112 (942)
-+..|..+..|+.-|..--..|++..|..++.++.+..|.+ + .+++..-+.+. .+.
T Consensus 278 retnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-------e---------DvWLeaiRLhp--------~d~ 333 (913)
T KOG0495|consen 278 RETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-------E---------DVWLEAIRLHP--------PDV 333 (913)
T ss_pred HhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-------H---------HHHHHHHhcCC--------hHH
Confidence 34488899999999999999999999999999998887643 1 11222222221 125
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 192 (942)
|..+.-++++..|.++..|+..+.+-.. ...=..+++++++..|++...|-. .....+.+.|.-++.++.+..
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvecc 406 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECC 406 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhc
Confidence 7788889999999999999987766543 334467899999999998876643 345667777999999999999
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC-----CCC
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-----PYC 267 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 267 (942)
|.+ .+.|.. +.++.-|+.|...+.++-+.-|.+...|+.-+.+....|+ .+.-...+.+.+..- .-+
T Consensus 407 p~s-~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 407 PQS-MDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred cch-HHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeec
Confidence 998 665654 4456679999999999999999999999999999999998 665566666655432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
...|..-|..+-..|..-.+..+....+...-...+....|..-+..+...+.++-|...|..+++. .|.....|..
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlr 555 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHH
Confidence 5678888888888888888888888888877777777889999999999999999999999999984 4566667888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (942)
.+..-..-|..++-..++++++...|.....|.+.+..+...|+...|...+..+++.+|++...|+.-..+. ....++
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH
Confidence 8888888899999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhh
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (942)
.|..+|.++....+ ...+|+.-+.+...+++.++|+.+++++++
T Consensus 636 raR~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk------------------------------ 679 (913)
T KOG0495|consen 636 RARDLLAKARSISG------TERVWMKSANLERYLDNVEEALRLLEEALK------------------------------ 679 (913)
T ss_pred HHHHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHH------------------------------
Confidence 99999999877433 368898889999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 002286 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (942)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 586 (942)
..|.....+..+|.++.++++.+.|...|...++..|..+..|+.++.+-...|+.-.|...++++.
T Consensus 680 -------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 680 -------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred -------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 6688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHH
Q 002286 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (942)
Q Consensus 587 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (942)
-.+|+++..|.....+-++.|+.+.|.....++++..|++.. .+ ...+ ++.. +. ++- ..+..
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-LW--aEaI-~le~-~~---------~rk----Tks~D 808 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LW--AEAI-WLEP-RP---------QRK----TKSID 808 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-hH--HHHH-Hhcc-Cc---------ccc----hHHHH
Confidence 999999999999999999999999999999999999887322 11 1112 2211 00 221 22344
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 667 ~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
+++....|+..+..+|.++....++++|.++|.+++..+| +..++|..+-..+...|.-++-.+.|..+....|.
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 5666678889999999999999999999999999999998 88999999999999999999999999999887554
Q ss_pred CC
Q 002286 747 NT 748 (942)
Q Consensus 747 ~~ 748 (942)
..
T Consensus 884 hG 885 (913)
T KOG0495|consen 884 HG 885 (913)
T ss_pred CC
Confidence 43
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=271.57 Aligned_cols=329 Identities=12% Similarity=0.022 Sum_probs=180.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (942)
.+..+...|++.+|...++.++...|+++.++..+|.+....|++++|+..+++++..+|+++.++..+|.++ ..|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 3444455555555555555555555555555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhh
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (942)
+|+..|++++...|. ++.++..++.++...|++++|+..+.+++.
T Consensus 128 ~Ai~~l~~Al~l~P~-----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~------------------------------ 172 (656)
T PRK15174 128 TVADLAEQAWLAFSG-----NSQIFALHLRTLVLMDKELQAISLARTQAQ------------------------------ 172 (656)
T ss_pred HHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------------------
Confidence 555555555554333 344555555555555555555555555444
Q ss_pred hhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
..|..+..+..++ .+...|++++|+..++.++..+|. .......++.++...|++++|+..+.++
T Consensus 173 -------------~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 173 -------------EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred -------------hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2233333333332 244555555555555555555432 2223333445555555555555555555
Q ss_pred HhhcCCChhHHHHhhhhhccccchHH----HHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 586 LKVNGKYPNALSMLGDLELKNDDWVK----AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
+..+|+++.++..+|.++...|++++ |+..|++++...|+ +..++..+|.+ +... |++++|+
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~-l~~~------------g~~~eA~ 304 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADA-LIRT------------GQNEKAI 304 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHC------------CCHHHHH
Confidence 55555555555555555555555553 55555555555554 44555555555 5555 5566666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (942)
..+++++..+|+++.++..+|.++...|++++|+..|++++...| ..+..+..+|.++...|++++|+..|++++
T Consensus 305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-----~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-----VTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666665554 344444445566666666666666666666
Q ss_pred hhh
Q 002286 742 RKF 744 (942)
Q Consensus 742 ~~~ 744 (942)
+..
T Consensus 380 ~~~ 382 (656)
T PRK15174 380 QAR 382 (656)
T ss_pred HhC
Confidence 653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=269.78 Aligned_cols=340 Identities=11% Similarity=0.023 Sum_probs=304.6
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
++.+|...+..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC-C
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-C 267 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~ 267 (942)
+..+|++ ..++..+|.++...|++++|+..+.+++...|+++.++..++. +...|+ +++|+..+++++..+|. .
T Consensus 137 l~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 137 WLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFALER 211 (656)
T ss_pred HHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCCcc
Confidence 9999999 7778999999999999999999999999999999988876644 677888 99999999999988763 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCCchh
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEFIF 343 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~ 343 (942)
......++.++...|++++|+..+.+++... |..+.+++.+|.++...|++++ |+..|++++. ..|+...
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~ 285 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVR 285 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHH
Confidence 4455666888999999999999999999764 6678999999999999999986 8999999998 5678889
Q ss_pred hhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hc
Q 002286 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422 (942)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~ 422 (942)
++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++..+..++.++ ..
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777788888 99
Q ss_pred CCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
|++++|+..|+++++..|... ...+++|+..|.+++.
T Consensus 366 G~~deA~~~l~~al~~~P~~~-----------------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASHL-----------------PQSFEEGLLALDGQIS 402 (656)
T ss_pred CCHHHHHHHHHHHHHhChhhc-----------------hhhHHHHHHHHHHHHH
Confidence 999999999999999877632 2344556666666665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=276.33 Aligned_cols=408 Identities=12% Similarity=0.001 Sum_probs=340.9
Q ss_pred HHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (942)
Q Consensus 88 ~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 167 (942)
....+....|+.. +|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++..
T Consensus 20 d~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 20 DWLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred HHHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344455566655 99999999998889898899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
+|.++...|++++|+..+++++...|++ .. +..+|.++...|++++|+..++++++.+|++..++..++.++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~- 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL- 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-
Confidence 9999999999999999999999999999 55 89999999999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCCCch----hHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF-----FTGQH---FLVEQLTETALAVTNHGPTK----SHSYYN 310 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~----~~~~~~ 310 (942)
.++|+..++++.. .|.... ....+..... ..+++ ++|+..++.++...+..|.. ..+...
T Consensus 166 --~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 --SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred --hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8899999987765 544311 1222222222 22334 67888888888664344432 222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 002286 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIY 386 (942)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~ 386 (942)
....+...|++++|+..|+++++..+..|... ...+|.++...|++++|+..|++++...|.+ ......++.++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 23345678999999999999987422224443 3346999999999999999999999888765 45677788889
Q ss_pred HHcCCHHHHHHHHHHHHHhCcC---------------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHH
Q 002286 387 VQLGQIEKAQELLRKAAKIDPR---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEV 450 (942)
Q Consensus 387 ~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 450 (942)
...|++++|+..++++....|. ...++..++.++ ..|++++|+..+++++...|. ++.+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~l 395 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQGL 395 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHH
Confidence 9999999999999999988763 245678889999 999999999999999987665 5899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHH
Q 002286 451 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530 (942)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (942)
+..+|.++...|++++|+..+++++. ..|++..+++.
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~-------------------------------------------l~Pd~~~l~~~ 432 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEV-------------------------------------------LEPRNINLEVE 432 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------------------------hCCCChHHHHH
Confidence 99999999999999999999999998 67889999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002286 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (942)
Q Consensus 531 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (942)
+|.++...|++++|...++.+++..|+++.+.
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999996543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=231.74 Aligned_cols=427 Identities=16% Similarity=0.147 Sum_probs=309.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
.+-.+|.-++..|+|++|+.+|..++...|+.+..+..++-||...|+|++.++...++++++|+. .-+++..+.++-.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 344567777777777777777777777777777777777777777777777777777777777777 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh-cCCHH
Q 002286 210 LGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFF-TGQHF 285 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~-~g~~~ 285 (942)
+|++++|+....-..=. +-.+......+-.++-.+ |+.....-++ ..|.-|.+. .++..+.. ..+.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~--------a~~ka~e~~k~nr~p~lPS~~-fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ--------AMKKAKEKLKENRPPVLPSAT-FIASYFGSFHADP- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH--------HHHHHHHhhcccCCCCCCcHH-HHHHHHhhccccc-
Confidence 77777777655432111 112222222222333222 2233333333 112222211 11111100 0000
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCC-CC---------chhhhhcHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKP-HE---------FIFPYYGLGQVQ 352 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~---------~~~~~~~la~~~ 352 (942)
..........++.-..-+.-+...+ .|..|...+.+........ .. .+.++...|..+
T Consensus 266 ---------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 ---------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ---------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000111222222222222333 5777777777665422111 11 155677788899
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
+-.|++-.|...|+.++.++|.+...+..+|.+|...++.++....|.++..++|.++++|+..|.++ ..+++++|+..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhh
Q 002286 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (942)
Q Consensus 432 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (942)
|++++.+.|. +.-.+..++.+.+++++++++...|+.+..
T Consensus 417 F~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk----------------------------------- 456 (606)
T KOG0547|consen 417 FQKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK----------------------------------- 456 (606)
T ss_pred HHHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 9999999877 578889999999999999999999999998
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH-HcCChhHHHHHHHH
Q 002286 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVNE 584 (942)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 584 (942)
..|..+.++...|.++..+++++.|.+.|..++.+.|. ++..+...|.+.. -.+++..|+.++++
T Consensus 457 --------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 457 --------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred --------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 56788999999999999999999999999999999998 5555666555533 35899999999999
Q ss_pred HHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCC
Q 002286 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 624 (942)
+++++|.+..++..+|.+.+++|+.++|++.|++++.+..
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-25 Score=235.77 Aligned_cols=644 Identities=15% Similarity=0.088 Sum_probs=436.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
++-..|+..|-++++++|+...++..+|..|....+...|..+|+++..+||.+..++-..+..+....+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 188 ALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 188 ~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+-+..|.. ....|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|. +..|++.|.++..++|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH
Confidence 66666543 123456699999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CC
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP 338 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~ 338 (942)
+..+.+..+.+....|.|.++...+...+..... ....++++..++..+...|-...|..+++++++.+. ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888753221 134467788888888888888888888777764221 00
Q ss_pred -CCchhhhhcHHHHHHH-----------------------cCCh------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 339 -HEFIFPYYGLGQVQLK-----------------------LGDF------RSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 339 -~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
-+....|..+|+...- .+.. --+.+++-..++.. .++..|+++|..|++
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHH
Confidence 1111112222211110 0000 11222222222221 124466667666665
Q ss_pred c--------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 002286 389 L--------GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460 (942)
Q Consensus 389 ~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (942)
. .+...|+.++.+++++..++...|..+|.+-..|++.-|..+|-+.+...|. ....|.++|.++..
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-----~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-----CHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-----chhheeccceeEEe
Confidence 1 2334677777777777777777777777665556677777777666655444 45667777777777
Q ss_pred cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh----hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHh
Q 002286 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (942)
Q Consensus 461 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (942)
..+++-|...|..+....|... ...+....-+.+ ......+.......... ........+..-.....
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl-------~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNL-------VQWLGEALIPEAVGRIIERLILFAHSDELCSKE-GKAKKFQYWLCATEIHL 934 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhh-------HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc-cccchhhHHHHHHHHHH
Confidence 7777777777777766544211 000000000000 00111111100000000 01112233333344455
Q ss_pred hcCCHHHHH----------HHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc------CCChhHHHHhh
Q 002286 537 QIHDTVAAS----------VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLG 600 (942)
Q Consensus 537 ~~g~~~~A~----------~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~ 600 (942)
..|++++-+ -..++.+..+|++..++...|.....++.+..|.....+++.+- ..++.+--.+|
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 555555444 34445566889999999999999999999999988888876532 23344777889
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH---HH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL---YA 677 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~a 677 (942)
.+++..|+++.|...+...-..... +. .-+.++ .|-. ++++++.+.|++++.+..++. ..
T Consensus 1015 RL~lslgefe~A~~a~~~~~~evdE-di-~gt~l~---lFfk------------ndf~~sl~~fe~aLsis~se~d~vvL 1077 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWMEVDE-DI-RGTDLT---LFFK------------NDFFSSLEFFEQALSISNSESDKVVL 1077 (1238)
T ss_pred hhhhhhcchhhHhhhhcccchhHHH-HH-hhhhHH---HHHH------------hHHHHHHHHHHHHhhhcccccchhhh
Confidence 9999999999777666532211111 11 111222 2233 899999999999998765533 34
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC--CHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--DAQILLY 755 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~ 755 (942)
....+++....+.-+.|...+-++....| ....++..++-++....+-.......++..+. +... .-..-+.
T Consensus 1078 l~kva~~~g~~~~k~~A~~lLfe~~~ls~-----~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1078 LCKVAVCMGLARQKNDAQFLLFEVKSLSK-----VQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLL 1151 (1238)
T ss_pred hHHHHHHHhhcccchHHHHHHHHHHHhCc-----cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHH
Confidence 55667777788889999999999988876 67788888887777655544433333433322 1111 1112234
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
.-.+|-..|+...-.+.++++++.+|.+|.+|-.+.
T Consensus 1152 ~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1152 KELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 455677789999999999999999999999998887
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=226.75 Aligned_cols=440 Identities=18% Similarity=0.127 Sum_probs=324.2
Q ss_pred HHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166 (942)
Q Consensus 87 ~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 166 (942)
...+..+-..|+.- -+.+.|++|+.+|+.++...|+.|.-+-+++-+|...|+|++.++...++++++|+.+.+++
T Consensus 112 ~k~A~~lK~~GN~~----f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~ 187 (606)
T KOG0547|consen 112 LKYAAALKTKGNKF----FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALL 187 (606)
T ss_pred HHHHHHHHhhhhhh----hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHH
Confidence 44566666667655 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHh-
Q 002286 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQ- 243 (942)
Q Consensus 167 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~- 243 (942)
.+|..+-..|++.+|+.-..-..-...-....+-..+-..+-. .|..-...-+. ..|.-+.+-+ +......
T Consensus 188 RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF 261 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATF-IASYFGSF 261 (606)
T ss_pred HHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHH-HHHHHhhc
Confidence 9999999999999998776543322211112222222222222 23333333333 2222222211 1111100
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC----------CchhHHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYC-AMALNYLANHFFFT---GQHFLVEQLTETALAVTNHG----------PTKSHSYY 309 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~---g~~~~a~~~~~~~~~~~~~~----------~~~~~~~~ 309 (942)
..++ .. .-.++.+ ..+...-+.-.... ..|..+...+.+........ ...+.++.
T Consensus 262 ~~~~----------~~-~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 262 HADP----------KP-LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred cccc----------cc-cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 0000 00 0000000 01111111111111 24555555554443221111 11257788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (942)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (942)
..|..++-.|++-.|...|..++. .+|.....|..+|.+|...++.++....|.++..++|.++++|+..|.++.-+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~---l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIK---LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL 407 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHh---cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence 889999999999999999999998 56666667999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002286 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 390 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
+++++|+..|++++.++|.+..++..++.+. .++.+.++...|+.+...+|. .+++++..|.++..+++++.|+
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-----~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-----CPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CchHHHHHHHHHhhHHhHHHHH
Confidence 9999999999999999999999999999988 999999999999999999887 5899999999999999999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH-HhhcCCHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDTVAASVL 547 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~ 547 (942)
+.|..++.+.+....+ --++..+...|.+ +.-.+++..|+.+
T Consensus 483 k~YD~ai~LE~~~~~~-------------------------------------~v~~~plV~Ka~l~~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLI-------------------------------------IVNAAPLVHKALLVLQWKEDINQAENL 525 (606)
T ss_pred HHHHHHHhhccccccc-------------------------------------cccchhhhhhhHhhhchhhhHHHHHHH
Confidence 9999999954321110 0023333333333 2234899999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC
Q 002286 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592 (942)
Q Consensus 548 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~ 592 (942)
++++++.+|....++..+|.+..++|+.++|+++|+++..+...-
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999998765443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-23 Score=238.78 Aligned_cols=545 Identities=13% Similarity=0.057 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhhHhhHHHHHHHcCCHHHHHHHHHH
Q 002286 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRYKLGQLGKARQAFQR 222 (942)
Q Consensus 144 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (942)
...+..+.+..+...+ +...+...-..+.+.|++.+|+.+|+.+...+.-.+ ...+..+...+...|..++|...|..
T Consensus 353 ~~~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 353 EENSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555544333 333344444445567788888888877766553221 22233345556677778888777766
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002286 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (942)
Q Consensus 223 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~ 301 (942)
... | +...+..+...+...|+ ++.|...+..+.+.. +.+..++..+...|...|+.+.|..+++.+.... .
T Consensus 432 M~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v 503 (1060)
T PLN03218 432 IRN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--V 503 (1060)
T ss_pred cCC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--C
Confidence 543 3 45666677777777777 778888887777654 3456777888888888888888888888877543 1
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh----CCCcHH
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCE 377 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~ 377 (942)
..+..+|..+...|.+.|++++|+..|..+... ....+...|..+...+.+.|++++|...|..+... .| +..
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 224577888888888888888888888888753 12233566888888888899999999999888753 34 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~ 455 (942)
++..+...|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+.. .+..++..+++.+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~----~Gv~PD~~TynsLI 656 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----KGVKPDEVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Confidence 78888888999999999999999988876 45678888888888 89999999999888765 24445678888899
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHH
Q 002286 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (942)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 535 (942)
..+.+.|++++|...|..+...+ . +.+..++..+...|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G-----------------------------------------~-~pd~~tynsLI~ay 694 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQG-----------------------------------------I-KLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC-----------------------------------------C-CCCHHHHHHHHHHH
Confidence 99999999999999999988743 2 23667888999999
Q ss_pred hhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc-CCChhHHHHhhhhhccccchHHH
Q 002286 536 EQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKA 612 (942)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A 612 (942)
.+.|++++|..+|+.+... .| +..+|..+...|.+.|++++|..+|+++.... ..+...+..+...+.+.|+++.|
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999988763 34 45789999999999999999999999987653 33555777777889999999999
Q ss_pred HHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCch
Q 002286 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 692 (942)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 692 (942)
...|..+.+....++..++..+... +. +.+++|....+.++..++.++. ...+..+
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~ 829 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRPQ---------IENKWTS 829 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhccccc---------cccchHH
Confidence 9999999988777777666555433 21 4467777776666655443322 2223446
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHccc-HHHHHH
Q 002286 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKK 771 (942)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 771 (942)
.|+.+|+++++..- ..+...+..+-.|+...+....+..+++.... .+..++..++..+...+ |+ .++|..
T Consensus 830 ~Al~lf~eM~~~Gi----~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~---~~~~~~A~~ 901 (1060)
T PLN03218 830 WALMVYRETISAGT----LPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGF---GEYDPRAFS 901 (1060)
T ss_pred HHHHHHHHHHHCCC----CCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhh---ccChHHHHH
Confidence 79999999998762 13556666666777788888888777766432 34555566777777665 43 358999
Q ss_pred HHHHHHHh
Q 002286 772 SLLRAIHL 779 (942)
Q Consensus 772 ~~~~al~~ 779 (942)
.++.+...
T Consensus 902 l~~em~~~ 909 (1060)
T PLN03218 902 LLEEAASL 909 (1060)
T ss_pred HHHHHHHc
Confidence 99998886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-24 Score=241.37 Aligned_cols=466 Identities=10% Similarity=-0.024 Sum_probs=307.8
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhhHh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-GAIRL 201 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~ 201 (942)
..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...++.++...|++++|+.++++++ +|.+. .....
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~ll 106 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLA 106 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHH
Confidence 3455566666666666666666666666666666666654333355555555566666666666666 33220 22222
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.++...|++++|+..|+++++.+|+++.++..++.++...++ .++|+..+.++...+|.+... ..++.++...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 335566666666666666666666666666666655565555555 666666666666666654433 3334444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc------
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL------ 355 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~------ 355 (942)
++..+|+..+++++... |.+.+.+..+..++...|-...|.+...+--..+ ...+........+.-.++.
T Consensus 183 ~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 55544666666666543 4455555666666666666655555444322111 0011001111111111111
Q ss_pred ---C---ChHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-
Q 002286 356 ---G---DFRSALTNFEKVLEIY---PDN----CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL- 420 (942)
Q Consensus 356 ---g---~~~~A~~~~~~~l~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~- 420 (942)
. -.+.|+..++.++... |.. ..+....-.++...|++.+++..|+.+.... |--..+....|..|
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1 2356777777777743 332 2244456667778899999999999887554 33445677788888
Q ss_pred hcCCHhHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchh-hhhccccccchhhhhhhh
Q 002286 421 ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS 498 (942)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~ 498 (942)
..+.+++|+.+|..++...+.. ..+.+......+...+...+++++|..++++.....|+ ........
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~---------- 408 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG---------- 408 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC----------
Confidence 9999999999999987654321 11223344567888999999999999999999885552 11111111
Q ss_pred hHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH
Q 002286 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (942)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 578 (942)
...+|+.......++.++...|++.+|.+.+++++...|.+...+..+|.++...|.+..|
T Consensus 409 -------------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 409 -------------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred -------------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 1156777888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCc
Q 002286 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (942)
Q Consensus 579 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 627 (942)
...++.+..++|++..+...++.++...|+|.+|......++...|++.
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999999999999999999999999999999843
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-22 Score=236.49 Aligned_cols=543 Identities=11% Similarity=0.008 Sum_probs=319.0
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
+...++....-. .+...+...-..+.+.|++++|+.+|+.+...+. .+...+..+...+...|...+|..++..+..
T Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGK-RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCC-CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 444444444332 2334444444555667777777777777665442 2333333444555666777777776665543
Q ss_pred hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC-CCH
Q 002286 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCA 268 (942)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~ 268 (942)
|+ ...+..+..++...|+++.|...|..+.+.... +...+..+...+.+.|+ +++|...|.++..... .+.
T Consensus 435 --pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 435 --PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred --CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCH
Confidence 33 345566666667777777777777776665432 45566666677777776 7777777777665542 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCCchhhhhc
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYYG 347 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 347 (942)
.++..+...|...|++++|..+|..+.... . ..+..+|..+...|...|++++|..+|..+... .+..| ....+..
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v-~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN-V-KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 677777777777777777777777765432 1 123456777777777777777777777777542 11122 2345666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH-hcC
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQAFIDLGELL-ISS 423 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~-~~~ 423 (942)
+...|.+.|++++|...|+.+.+.. +.+..+|..+...|.+.|++++|..+|..+... .| +...+..+...+ ..|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCC
Confidence 6777777777777777777776654 345667777777777777777777777777654 34 355666666666 777
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
++++|..++..+.+ .+...+..+++.+...|.+.|++++|...|+++...+
T Consensus 664 ~~eeA~~l~~eM~k----~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------------------------- 714 (1060)
T PLN03218 664 DLDKAFEILQDARK----QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------- 714 (1060)
T ss_pred CHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Confidence 77777777776654 2444456677777777777777777777777765532
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChhHHHHHH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
..| +..++..+...|.+.|++++|.+++.++.... ..+..+|..+...+...|++++|..++
T Consensus 715 ----------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 715 ----------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred ----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223 45567777777777777777777777766532 223456666666777777777777777
Q ss_pred HHHHhhcC-CChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 583 NEALKVNG-KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 583 ~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
..+.+... .+..++..+..++. +.+++|....+..+... .++. .... +..+.|+
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~-~~~n------------~w~~~Al 832 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRP-QIEN------------KWTSWAL 832 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------cccc-cccc------------chHHHHH
Confidence 77766542 12223333322211 23444444433333221 1111 1112 4445677
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 662 ELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 662 ~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
.+|++++... ..+...+..+-.++...+....+...+..+.... .+.+...|..+-+.+.. ...+|..+|+.+
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~----~~~~~~~y~~Li~g~~~--~~~~A~~l~~em 906 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA----DSQKQSNLSTLVDGFGE--YDPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC----CCcchhhhHHHHHhhcc--ChHHHHHHHHHH
Confidence 7777777654 1133344444445555555555555554433221 12445555556555522 134677777777
Q ss_pred Hhhh
Q 002286 741 LRKF 744 (942)
Q Consensus 741 l~~~ 744 (942)
....
T Consensus 907 ~~~G 910 (1060)
T PLN03218 907 ASLG 910 (1060)
T ss_pred HHcC
Confidence 6644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=214.04 Aligned_cols=455 Identities=19% Similarity=0.176 Sum_probs=358.8
Q ss_pred HHHHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHH
Q 002286 108 EHFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSD 180 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~ 180 (942)
+.+.+|+..|+-+++. .|+.....+.+|.+++++.+|.+|+++|+.++..-|.- ...+...|..+.+.|.|+.
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 3455899999887764 47777888899999999999999999999999988852 4567788889999999999
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCCHHHHHHHHHHHHhh--
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------------DPENVEALVALAVMDLQA-- 244 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~l~~~~~~~-- 244 (942)
|+..|..+.+..|+. . .-+.+..|++..|+-++-.+.|.+.+.+ +|++......+-.-.++.
T Consensus 295 ainsfdh~m~~~pn~-~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNF-I-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHhCccH-H-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 999999999999998 3 3467889999999999999999999875 222211111111111111
Q ss_pred -ccHHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCH
Q 002286 245 -NEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (942)
Q Consensus 245 -~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (942)
.+....++++-.--+.+. +.|+....+- ++-..++.....+...+.-...+..+...|++
T Consensus 373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~d-----------------wcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 373 KENKADAEKAIITAAKIIAPVIAPDFAAGCD-----------------WCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HhhhhhHHHHHHHHHHHhccccccchhcccH-----------------HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 111112333333222221 1233222111 11122222222233345566778889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc--CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
+.|++.+.-..+. ++.....+-.+|..+++.+ .++..|..+...++.++.-++.++.+.|.+-+..|++++|.+.|
T Consensus 436 ~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999998766542 2233334455666666664 47889999999999999999999999999999999999999999
Q ss_pred HHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 002286 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (942)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 478 (942)
+.++..+.....+++++|..+ .+|+.++|+.+|-+...++.. +.+++..++.+|..+.+..+|++++.++..
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~s-- 586 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANS-- 586 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--
Confidence 999999988999999999999 999999999999999888776 589999999999999999999999999887
Q ss_pred hhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
.-|.++.++..+|.+|-+.|+-..|.+++-....-.|.+
T Consensus 587 -----------------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 587 -----------------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence 668899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHH
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 632 (942)
.+..-.|+..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|...|+..-...|. +...+-
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclk 698 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLK 698 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHH
Confidence 9999999999999999999999999999999998888888999999999999999999999888887 544433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-24 Score=240.31 Aligned_cols=441 Identities=12% Similarity=-0.009 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
+|++..|+..|.++++.+|.++.+...++.++...|+.++|+..+++++...|.....+..+|.++...|+|++|+.+|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455999999999999999975555888999999999999999999994444555666666889999999999999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
++++.+|++ +.++..++..+...++.++|+..++++...+|.+... ..++.++...++ ..+|+..++++++.+|+
T Consensus 127 kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 127 SSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCC
Confidence 999999999 7778899999999999999999999999999986554 555555554555 66699999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh---------cC---CHHHHHHHHHHHHHh
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS---------KG---DYEKAGLYYMASVKE 334 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g---~~~~A~~~~~~a~~~ 334 (942)
+..++..+...+...|-...|.++...--..... ......-...+.-..+ .+ -.+.|+.-++..+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887763322111 0101111111111111 11 235566667776664
Q ss_pred cCCCCCc----hhhhhcHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--
Q 002286 335 INKPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-- 407 (942)
Q Consensus 335 ~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-- 407 (942)
.+..|.. ..+....-.++...|++.+++..|+.+.... |--.-+....|..|...+++++|..+|..++...|
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 4443432 3344556677889999999999999987654 22345788899999999999999999999987653
Q ss_pred ----CcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 408 ----RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK----------AGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 472 (942)
Q Consensus 408 ----~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (942)
.+......|...+ ..+++++|..++++.....|. ...+.-.+....++.++...|++.+|...++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2344456677777 999999999999999875441 0111223677778999999999999999999
Q ss_pred HHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 002286 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (942)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (942)
+.+. ..|.+..+...+|.++...|.+..|...++.+.
T Consensus 441 ~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 441 DLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 9988 678899999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHH
Q 002286 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (942)
Q Consensus 553 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 596 (942)
..+|++..+...++.++...+++.+|......++...|+++.+.
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999999999999999999999999998654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=215.10 Aligned_cols=480 Identities=18% Similarity=0.174 Sum_probs=261.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----hhhHhh
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~ 202 (942)
.+++.++..|.....+.+|+..|+-+++. .|+....-+.+|.++++..+|.+|+++|+-++..-|... ..+...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788999999999999999999988854 677777778899999999999999999999999888753 334567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC--CC---------CH-HH
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--PY---------CA-MA 270 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~---------~~-~~ 270 (942)
+|..+.+.|.|+.|+..|+.+++..|+.. +-+.|..+++..|+ .++-.+.|.+.+.+. |+ +| ..
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88999999999999999999999999744 45567778888888 666666777777542 11 11 01
Q ss_pred HHHHH---HHH--HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 002286 271 LNYLA---NHF--FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (942)
Q Consensus 271 ~~~la---~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 345 (942)
+..-+ ..+ ....+-..|++..-.+.+... |. -.-+|.....++-..++.....+-....-
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pv-------------i~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PV-------------IAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--cc-------------cccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 11000 000 001111112222221111100 00 00011111111111121111111112223
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 421 (942)
...+..+.+.|+++.|++.+.-.-+.+.... .+-.+|..+++.+ .++..|..+...++.++.-++.+..+.|.+. .
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 3444555566666666655544433332211 1223333333332 2455555555555555555555555555555 5
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.|++++|.+.|+.++..... ..++++++|..+..+|+.++|+.+|-+.-..
T Consensus 503 ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i------------------------ 553 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI------------------------ 553 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------------------------
Confidence 55555555555555542211 2355555555555555555555555554331
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
--++..+++.++.+|..+.+...|+++|.++...-|+++..+..|+.+|-+.|+-.+|..+
T Consensus 554 -------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 554 -------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred -------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 1124455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 582 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
+-......|.+.++.-.+|..|....-+++|+.+|+++.-..|....+ .+..+.+ +... |+|.+|.
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw-qlmiasc-~rrs------------gnyqka~ 680 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW-QLMIASC-FRRS------------GNYQKAF 680 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH-HHHHHHH-HHhc------------ccHHHHH
Confidence 555555555555555555555555555555555555554444432211 1122222 3333 5555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g 689 (942)
..|+..-+..|.+...+-.|..+....|
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 5555555555555555554444444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-23 Score=219.56 Aligned_cols=599 Identities=15% Similarity=0.082 Sum_probs=393.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
.|..+|..|+..++...|+..|+.+++.+|.+..+|.++|.+|...|.|..|++.|.++..++|.+ ....+..+.....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHHH
Confidence 445566666667777777777777777778778888888888888888888888888887777777 5666777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-------cc----HHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 002286 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-------NE----AAGIRKGMEKMQRAFEIY-PYCAMALNYLANH 277 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------~~----~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 277 (942)
+|.+.+|+..+...+........+...++.++++. |- .+-++++++.|.-++... .++...|..++..
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 78888888777777766555444455555444432 21 011334444444333333 3333344444332
Q ss_pred HHhcCCHH--H---------------------------HHHHHHHHHhcCCCCCchhHHHHHHHHHHHh--------cCC
Q 002286 278 FFFTGQHF--L---------------------------VEQLTETALAVTNHGPTKSHSYYNLARSYHS--------KGD 320 (942)
Q Consensus 278 ~~~~g~~~--~---------------------------a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~ 320 (942)
....-..+ . +.+.+-..++. ...+..|+++|..|+. +.+
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl----~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL----AIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH----hhccchHHHHhHHHHHHHHHcCCcchh
Confidence 22111110 1 11111111111 1124668888887776 223
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
-..|+.++.++++ ...++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++.|...|.
T Consensus 799 ~~~Ai~c~KkaV~---L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVS---LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHHHHHHHHH---HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 3578888888887 445666678888877 666889999999999999999999999999999999999999999999
Q ss_pred HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcch
Q 002286 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 479 (942)
++..++|.+...|...+.+. ..|+.-++...+..........+.......+..-...+..+|++++-+..-+++.....
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 99999999999999998888 88988888888887666655555555566777777778888888877776666544211
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh-----
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----- 554 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 554 (942)
-.+ ......|+...++...|.....++.+..|.+.+.+++..
T Consensus 955 al~---------------------------------~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~ 1001 (1238)
T KOG1127|consen 955 ALS---------------------------------YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKL 1001 (1238)
T ss_pred HHH---------------------------------HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 001156888899999999999999999999998887642
Q ss_pred -CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh-HHHHhhhhhccccchHHHHHHHHHhhccCCCC-chhHH
Q 002286 555 -YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDGK-DSYAT 631 (942)
Q Consensus 555 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 631 (942)
...+..+--..|.+++..|+++.|...+... |.... -........+-.|++.++.+.|++++.+..+. +...+
T Consensus 1002 d~sqynvak~~~gRL~lslgefe~A~~a~~~~----~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvL 1077 (1238)
T KOG1127|consen 1002 DESQYNVAKPDAGRLELSLGEFESAKKASWKE----WMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVL 1077 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhhcchhhHhhhhccc----chhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhh
Confidence 1233346777889999999999776554332 11111 00111112256789999999999999976553 33333
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 711 (942)
+.-+.+..... +.-+.|....-+++...|.+......++.++.-..+-.....+.++....-. +..
T Consensus 1078 l~kva~~~g~~------------~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k-~e~- 1143 (1238)
T KOG1127|consen 1078 LCKVAVCMGLA------------RQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLK-LEW- 1143 (1238)
T ss_pred hHHHHHHHhhc------------ccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhh-hHH-
Confidence 33332211222 6678888999999999999999988888887766555444444444433221 000
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH-cc-------------cHHHHHHHHHHHH
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AE-------------QWQDCKKSLLRAI 777 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~-~g-------------~~~~A~~~~~~al 777 (942)
..-..-+..-.+|..+|+-..-.+.+++++-.+| .++.++..|..-|.. .+ .+..-++..+++.
T Consensus 1144 ~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P--~~~~~WslL~vrya~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~ 1221 (1238)
T KOG1127|consen 1144 FCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNP--GDPALWSLLSVRYAQRNAKNGVVANHGKKAYLYTAVLKTIQKAA 1221 (1238)
T ss_pred hccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHhccCCeehhHHHHHHHHHHHHHHHHHHH
Confidence 1112223445677888999888999999988754 555565555532221 11 1223456678889
Q ss_pred HhCCCChhhHhhH
Q 002286 778 HLAPSNYTLRFDA 790 (942)
Q Consensus 778 ~~~p~~~~~~~~l 790 (942)
.+.|-||.+|-.+
T Consensus 1222 ~L~Pwd~a~wkaL 1234 (1238)
T KOG1127|consen 1222 LLSPWDPAIWKAL 1234 (1238)
T ss_pred hcCCCCHHHHHHH
Confidence 9999999887554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-23 Score=210.76 Aligned_cols=561 Identities=15% Similarity=0.120 Sum_probs=392.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHH
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 349 (942)
.++..+.-.+..++|.+.+++.+.+++. .|..+++....|..+...|+-++|..+...++. .++.+..+|..+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHH
Confidence 3444445556778888888888888874 477779999999999999999999999999998 7788889999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHH
Q 002286 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAA 428 (942)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A 428 (942)
.++....+|++|+++|..++.+.|+|..++..++.+..++++++.....-.+.++..|..-..|+.++... ..|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhh
Q 002286 429 LDAFKTARTLLKKAGEE---VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 429 ~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
...++...+........ ...+........+...|.+++|++.+..--..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------------------------- 214 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---------------------------- 214 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----------------------------
Confidence 99999888765421111 11245556677788889988888888765331
Q ss_pred hhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH-HHHHH
Q 002286 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNE 584 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~ 584 (942)
--+........+.++..++++++|...|...+..+|++...+..+-.++..-.+.-++. ..|..
T Consensus 215 ---------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 215 ---------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred ---------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11244455567899999999999999999999999999888888877776333444444 55555
Q ss_pred HHhhcCCChhHHHHhhhhhccccchHH-HHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHH
Q 002286 585 ALKVNGKYPNALSMLGDLELKNDDWVK-AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (942)
.-+..|...... .++.....-.+... --.++...++.+-.+-. ..+-.+ |-.. +. ..-.++-+..
T Consensus 280 ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SL-yk~p--------~k-~~~le~Lvt~ 345 (700)
T KOG1156|consen 280 LSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSL-YKDP--------EK-VAFLEKLVTS 345 (700)
T ss_pred HhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHH-Hhch--------hH-hHHHHHHHHH
Confidence 555444443322 22222222223322 22334444444321111 111111 1110 00 0111122222
Q ss_pred HHHHHhcC------------CC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC
Q 002286 664 YTRVIVQH------------TS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729 (942)
Q Consensus 664 ~~~~l~~~------------p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~ 729 (942)
|...+.-. |. -.|.++.++.-+-..|+++.|..+++.+++..| ..++.+..-|+++...|+
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-----TliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-----TLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHHhcCC
Confidence 22222211 22 245667888889999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHh--hhhhcCC
Q 002286 730 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS--TLQKTRR 807 (942)
Q Consensus 730 ~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~l~~~~~ 807 (942)
+++|..++..+.+. +.+|..+....|.-..+.++.++|.+++.+- ..+..+..-..+-..|++++.+. ++.+.
T Consensus 421 l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skF-Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~-- 495 (700)
T KOG1156|consen 421 LDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKF-TREGFGAVNNLAEMQCMWFQLEDGEAYLRQ-- 495 (700)
T ss_pred hHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHh-hhcccchhhhHHHhhhHHHhHhhhHHHHHH--
Confidence 99999999999998 7777777778999999999999999988774 33433555555556667777652 22222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcHHHHHHHHHH--H--HHHHHHHHHHHHHHH----------------
Q 002286 808 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEY--C--KHLLDAAKIHREAAE---------------- 867 (942)
Q Consensus 808 ~~~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~---------------- 867 (942)
..+..|...+....++|...+.+... +|.++.++.+.+... . .+.+......+++++
T Consensus 496 --~k~g~ALKkfh~i~k~~~~~~~dqfD-fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~ 572 (700)
T KOG1156|consen 496 --NKLGLALKKFHEIEKHYKTWSEDQFD-FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMY 572 (700)
T ss_pred --HHHHHHHHHHhhHHHHHHHHhhhhhh-HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccc
Confidence 34677888888888889888887644 455555544443321 1 233333333333333
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002286 868 -----------REEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKL 906 (942)
Q Consensus 868 -----------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (942)
++++++++++..++++++.|+++.+++.+.+..-+..++
T Consensus 573 ~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~ 622 (700)
T KOG1156|consen 573 TNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKP 622 (700)
T ss_pred cccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 345566666666666666655555555554444443333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-23 Score=212.34 Aligned_cols=506 Identities=14% Similarity=0.119 Sum_probs=346.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
+-+-...+.+|..|+-+-+++..+. .+|.+ -+.+|.|++-.|++..|......- .++..+..+.+..+.++....+
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d-~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~- 97 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT-NDPAD-IYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE- 97 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc-CChHH-HHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH-
Confidence 3334455666777777777766665 33233 345677777777777766655543 3444555566666666666655
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (942)
+++|+..+.+. ... .++..+. +.. + +......+..
T Consensus 98 --~~~al~vl~~~-~~~-~~~f~yy-----------------------------~~~--~----~~~l~~n~~~------ 132 (611)
T KOG1173|consen 98 --WDQALLVLGRG-HVE-TNPFSYY-----------------------------EKD--A----ANTLELNSAG------ 132 (611)
T ss_pred --HHHHHHHhccc-chh-hcchhhc-----------------------------chh--h----hceeccCccc------
Confidence 66665555433 000 0000000 000 0 0000000000
Q ss_pred HHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-----H
Q 002286 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK-----A 402 (942)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-----~ 402 (942)
. ...........+..|.+|....+.++|...|.+++..++.+.+++..+.....-..+ +-...+.. .
T Consensus 133 -----~-~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~--Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 133 -----E-DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQ--EEFELLESLDLAML 204 (611)
T ss_pred -----c-cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchh--HHHHHHhcccHHhh
Confidence 0 001112233466678888888888888888888888888877776665544433321 11111111 0
Q ss_pred HHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhh
Q 002286 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482 (942)
Q Consensus 403 l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 482 (942)
...+......++.+-..- ..-+.+...-.. ..-.+...++.++...+..++..+++.+..+.++..+..
T Consensus 205 ~~ed~e~l~~lyel~~~k--~~n~~~~~r~~~----~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----- 273 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCK--NRNEESLTRNED----ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----- 273 (611)
T ss_pred hhhHHHHHHHHHHhhhhh--hccccccccCch----hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----
Confidence 011111111111111000 000000000000 000111235678888899999999999999999999984
Q ss_pred hccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchh-HHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH
Q 002286 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT-VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (942)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (942)
+|-... .-..+| ++...|+..+-..+-.+++..+|+.+-.
T Consensus 274 --------------------------------------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 274 --------------------------------------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred --------------------------------------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence 343444 444555 8888899888888888999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHH
Q 002286 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 641 (942)
Q Consensus 562 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~ 641 (942)
|+.+|..|...|++.+|..+|.++..++|....+|..+|..+...|+.++|+..|..+.+..++... ..+.+|.- |..
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgme-y~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-PSLYLGME-YMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-hHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877332 23346666 888
Q ss_pred HHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC--CCchhHHHH
Q 002286 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF--VQMPDVWIN 719 (942)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~~~~ 719 (942)
+ +++.-|..+|.+++.+.|.++...+.+|.+....+.+.+|..+|+.++..-+.... +.....+.|
T Consensus 393 t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 393 T------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred h------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 8 99999999999999999999999999999999999999999999999854432111 123456899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHH
Q 002286 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (942)
Q Consensus 720 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 796 (942)
|||++.+++.+.+||..|++++.. .+.++.++..+|.+|...|+.+.|+..|.+++-+.|++..+.--|+.+++.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999 677889999999999999999999999999999999997777666665444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-23 Score=245.88 Aligned_cols=428 Identities=11% Similarity=0.008 Sum_probs=293.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHH
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 349 (942)
++..+...+...++++.+..++..+.... ..| +..++..+...|...|+++.|...|..+.. .+..+|..+.
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li 196 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSG-FEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE------RNLASWGTII 196 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHH
Confidence 33334444444444444444444443322 112 234455555555566666666665555431 1233455566
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-hcCCHh
Q 002286 350 QVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~ 426 (942)
..|.+.|++++|+..|+++....+ .+..++..+...+...|....+..++..+.+.. ..+..++..+...| ..|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 666666666666666666655432 133455555555666666666666666555543 23455566666666 667777
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhh
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 506 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (942)
+|...|+.+.. .+..+|+.+...|.+.|++++|+..|.++...+
T Consensus 277 ~A~~vf~~m~~--------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------------------- 320 (697)
T PLN03081 277 DARCVFDGMPE--------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------------------- 320 (697)
T ss_pred HHHHHHHhCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------------------------
Confidence 77666655421 245677777788888888888888888776532
Q ss_pred hhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 507 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
..| +..++..+..++...|++++|.+++..+++.. +.+..++..+...|.+.|++++|...|+++
T Consensus 321 -------------~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 321 -------------VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred -------------CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 223 45567777888888888888888888887765 455677888888888888888888888876
Q ss_pred HhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH
Q 002286 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (942)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (942)
.. .+..+|..+...|.+.|+.++|+..|+++...+..++..++..+... +... |..++|.++|+
T Consensus 387 ~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~~~~a~~~f~ 450 (697)
T PLN03081 387 PR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYS------------GLSEQGWEIFQ 450 (697)
T ss_pred CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HhcC------------CcHHHHHHHHH
Confidence 53 35678888888888899999999999988887777778887777777 7777 88999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 666 RVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 666 ~~l~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.+.+..+ .+...+..+..+|.+.|++++|.++++++ |. ..+..+|..+...+...|+++.|...+++++..
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~---~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 8876432 35567888889999999999999888764 21 145677888999999999999999999998877
Q ss_pred hCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 744 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
.+.+...+..++.+|.+.|++++|.+.++.+....
T Consensus 524 --~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 524 --GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred --CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 34456678888999999999999999998877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-23 Score=242.78 Aligned_cols=463 Identities=12% Similarity=0.011 Sum_probs=314.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
..|......+...|++++|+..|+.+....| .+...+..+...+...++++.|..++..+..........++..+..+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4677777778888888888888888776442 35566777777777888888888888877775533335667777788
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
|.+.|+++.|...|+++.+ | +...|..+...+...|+ +++|+..|.++....+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~-------------------- 221 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGN---YREAFALFREMWEDGSD-------------------- 221 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCC--------------------
Confidence 8888888888888877642 2 34556666666666666 66666666666544321
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
.+..++..+...+...|....+..++..+.+.. -.....++..+...|.+.|++++|...|+
T Consensus 222 ----------------p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 222 ----------------AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred ----------------CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 112334444455555666666666655555421 12233455666677777777777777776
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC
Q 002286 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (942)
.+. +.+..+|..+...|.+.|+.++|+.+|.++.... ..+...+..+...+ ..|+++.|...+..+.+. +.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~ 356 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GF 356 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CC
Confidence 552 3456677777777777777777777777766532 22445566666666 777777777766666543 33
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc
Q 002286 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (942)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (942)
..+..+++.+...|.+.|++++|...|+++.. | +
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------------------------------------------~-d 390 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------------------------------------------K-N 390 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------------------------C-C
Confidence 34556677777777777888888777776543 1 4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC--ChhHHHHhh
Q 002286 525 VTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLG 600 (942)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~ 600 (942)
..+|..+...|.+.|+.++|.++|+++... .|+ ..++..+...+...|..++|..+|+.+.+..+- +...|..+.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 456777777777888888888888877663 233 456777777777788888888888887764432 334677777
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.++.+.|+.++|.+.++++ ...++..++..+... +... |+++.|...+++++...|+++..+..
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 8888888888888877754 223355666667666 6666 88888888888888888888888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 681 AGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
++.+|...|++++|.++++.+.+..
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 8888888888888888888887765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=212.58 Aligned_cols=447 Identities=17% Similarity=0.158 Sum_probs=366.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
+..|.-|+-+-+++..+. ++|.-.+.+|.+++..|.+.+|......- ..+..+..+.+..+.++...+++++|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888999999999999999998887765 5666788899999999999999999999988
Q ss_pred HH------HHhCCCC------------------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 187 ~~------l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
+. +..+|.+ ...+.+..|.+|..+.+.++|...|..++..++.+.++...+-...+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 32 1111211 12345668889999999999999999999999999888776654443
Q ss_pred hhccHH-----------hHHHHHHHHHHHHHh-------------C--------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 243 QANEAA-----------GIRKGMEKMQRAFEI-------------Y--------PYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 243 ~~~~~~-----------~~~~A~~~~~~~~~~-------------~--------p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
...... ...+-.+.++..+++ + .+++.+....+..++..+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 332100 011111111111111 1 24667888889999999999999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
++..+...+ -....+.....++...|+..+-..+-.+.++ ..|..+..|+..|..|...|++.+|..+|.++..
T Consensus 267 t~~lle~dp---fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 267 TEELLEKDP---FHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred hHHHHhhCC---CCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 999998653 3334443333388888988777776677776 7788889999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHH
Q 002286 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (942)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (942)
++|....+|...|.++...|..++|+..|..+.++-|......+.+|.-| ..+++.-|..+|.++..+.|. +|-
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-----Dpl 415 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-----DPL 415 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-----cch
Confidence 99999999999999999999999999999999999999988889999999 899999999999999999887 689
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHH
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (942)
+++.+|.+.+..+.+.+|..+|+.++..-+ +. ....+....++.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik--~~----------------------------------~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK--SV----------------------------------LNEKIFWEPTLN 459 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh--hc----------------------------------cccccchhHHHH
Confidence 999999999999999999999999984211 00 001123556789
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
++|.++.+++.+++|+..|++++...|.++.++..+|.++...|+++.|++.|.+++.+.|++..+-..|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-22 Score=194.48 Aligned_cols=449 Identities=16% Similarity=0.169 Sum_probs=354.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh------hhhhHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK------QREKEEHFILAT 114 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~------~~~~~~~~~~A~ 114 (942)
...+++|..|+....++.|.-.|+..-+.. .. .+...+.....--+.... ...+.......+
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~k--~~----------FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l 146 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSKK--SA----------FLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSEL 146 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchHH--HH----------HHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHH
Confidence 357889999999999999999998765431 11 111111111110000000 001111222344
Q ss_pred HHHHHHhhc----CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 115 QYYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 115 ~~~~~a~~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
..+++-++. ...|+..++..|.++-..|..+.|+..|..++...|-+-.+|..++.+... +........
T Consensus 147 ~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~ 219 (559)
T KOG1155|consen 147 IELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV 219 (559)
T ss_pred HHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh
Confidence 444443332 234678889999999999999999999999999999999999999876432 333344443
Q ss_pred hCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 191 VHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 191 ~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..|.+ ....-+.++.++..+...++++.-++..... .|.+.-.-...|.+.....| +++|+..|+...+.+|...
T Consensus 220 ~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 220 GLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcc
Confidence 34432 1333456888888899999999999998888 78888888888888888888 9999999999999999998
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
.-.-...++++-..+-.+..-+...+.... .-.++++..+|..|...++.++|+.+|+++++ .+|....+|..+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~id---KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLm 370 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNID---KYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLM 370 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHhc---cCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHh
Confidence 888888888888888777666666666543 45568899999999999999999999999998 789999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (942)
|.-|..+++...|+..|+.+++++|.+..+|+.+|..|.-++...=|+-+|+++....|+++..|..+|.+| ..++.++
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhh
Q 002286 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (942)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (942)
|+++|.+++..... ...++..+|.+|-+.++..+|..+|++.+..... .
T Consensus 451 AiKCykrai~~~dt-----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~----e---------------------- 499 (559)
T KOG1155|consen 451 AIKCYKRAILLGDT-----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL----E---------------------- 499 (559)
T ss_pred HHHHHHHHHhcccc-----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----h----------------------
Confidence 99999999986433 4689999999999999999999999999873210 0
Q ss_pred hhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
....|....+...++..+.+.+++++|..+...++.-++.-
T Consensus 500 ----------g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 500 ----------GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred ----------cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 01344566677779999999999999998888877664443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-22 Score=196.43 Aligned_cols=424 Identities=16% Similarity=0.088 Sum_probs=326.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----------------Ch---HHHHHHHHHHHHh
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----------------RY---SDSLEFYKRALQV 191 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g----------------~~---~~A~~~~~~~l~~ 191 (942)
.+.+|..++....++.|.-.++.... ....+..-.+.+-.| .+ ...+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 45677888888888888777766543 111111111111111 11 1122222222222
Q ss_pred ---CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC--C
Q 002286 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--Y 266 (942)
Q Consensus 192 ---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~ 266 (942)
.-+..+..++..|.++.+.|....|+..|..++...|-+..+|..|+.+..... ........-| .
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----------~~~~l~~~l~~~~ 225 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----------ILSILVVGLPSDM 225 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----------HHHHHHhcCcccc
Confidence 122236677889999999999999999999999999999999999987654332 2222222233 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 346 (942)
+...-..+..++....+.+++..-.+.....+ .|.....-...|.+.+...++++|+..|+...+ .+|-...-.-
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmd 300 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMD 300 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHH
Confidence 45556667777777777777777777766542 355566777888899999999999999999998 4565555555
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (942)
....+++-.++-.+-.-.-..+..++.-.+++...+|..|.-.++.++|+.+|+++++++|....+|..+|.-| +..+.
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 55666666666555555666777788888889999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhh
Q 002286 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
..|+..|++|+++.|. +-.+|+.+|..|.-++.+.=|+-+|++|..
T Consensus 381 ~AAi~sYRrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~----------------------------- 426 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE----------------------------- 426 (559)
T ss_pred HHHHHHHHHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh-----------------------------
Confidence 9999999999998877 578999999999999999999999999988
Q ss_pred hhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
..|.+..+|..+|.+|.+.++.++|+++|..++........++.++|.++.+.++..+|..+|.+.
T Consensus 427 --------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 427 --------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred --------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 778899999999999999999999999999999988888899999999999999999999999998
Q ss_pred Hhh-------cCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 586 LKV-------NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 586 l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
++. .|....+...|+..+.+.+++++|-.+...++.-
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 884 3555567778999999999999998887776654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=194.25 Aligned_cols=452 Identities=15% Similarity=0.152 Sum_probs=294.7
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..++..+.-.+..++|...+...+.+++..|.+++.+..+|..+...|+-++|......++..++.+ ...|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~R 86 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHHh
Confidence 3556666666777777777888888877777777777777777777888888888887777777777 666777787777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~ 288 (942)
...+|++|+.+|+.|+..+|+|...|.-++.+..+.++ ++.....-.+.++..|.....|..++..+...|++..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888777777777777 777777777777777777777777777788888888777
Q ss_pred HHHHHHHhcCCCCCc-----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHH
Q 002286 289 QLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (942)
Q Consensus 289 ~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (942)
...+...+.....|. ..++......+....|.+++|.+.+..-.. ..-+........+.++.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 777777655432222 245666677788889999999888876543 222333445668899999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHc
Q 002286 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 442 (942)
Q Consensus 364 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~ 442 (942)
.+..++..+|++...+..+-.++....+--+++ ..|...-+..|.. .....++.....| ++-...+.+.+...-..
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~--eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNG--EELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCc--chhHHHHHHHHHHHhhc
Confidence 999999999999998888888876443444444 4555444444432 2233333333111 22222233333222111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCC
Q 002286 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522 (942)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (942)
|. +.+...+-.+|-.... . ..+++.+.... ..+++.. .+.- .+. ...+.+.
T Consensus 318 g~---p~vf~dl~SLyk~p~k---~-~~le~Lvt~y~--~~L~~~~------------------~f~~-~D~-~~~E~Pt 368 (700)
T KOG1156|consen 318 GV---PSVFKDLRSLYKDPEK---V-AFLEKLVTSYQ--HSLSGTG------------------MFNF-LDD-GKQEPPT 368 (700)
T ss_pred CC---CchhhhhHHHHhchhH---h-HHHHHHHHHHH--hhccccc------------------CCCc-ccc-cccCCch
Confidence 11 2223333333222111 1 12332222100 0000000 0000 000 0011222
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
...+.++.++.-+...|+++.|..+.+.++...|..++.+...|.++...|++++|..++..+.+++-.+..+-..-|..
T Consensus 369 tllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKY 448 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 34556677788888889999999999999988888888888888999889999999888888888876666555566666
Q ss_pred hccccchHHHHHHHHHh
Q 002286 603 ELKNDDWVKAKETFRAA 619 (942)
Q Consensus 603 ~~~~g~~~~A~~~~~~~ 619 (942)
.++.++.++|.+.....
T Consensus 449 mLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHccccHHHHHHHHHh
Confidence 66666666666655543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-24 Score=218.99 Aligned_cols=312 Identities=21% Similarity=0.248 Sum_probs=258.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
..+.++..+|..|..+.. -+..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~---------y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQ---------YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455666666666665543 34569999999976667777788888999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
.....-....++....+--+---+.+..+..+|+. +..|..+|.||.-+++++.|+.+|+++++++|+..-++..+|.-
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 76666556666666666555555667778888988 77799999999999999999999999999999999999999988
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCC
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 320 (942)
+....+ +++|+..|+.++..+|.+-.+|+.+|.+|.++++++.|+-.|++++... |.+......+|.++.+.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhh
Confidence 888877 9999999999999999999888888888888888888888888888654 7777788888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
.++|+.+|++|+. .+|.++...+..|.+++..+++++|+..++++.+.-|++..++..+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 8888888888886 5677777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCcCcHH
Q 002286 401 KAAKIDPRDAQ 411 (942)
Q Consensus 401 ~~l~~~p~~~~ 411 (942)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88888876544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=205.06 Aligned_cols=438 Identities=17% Similarity=0.165 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.|+|+.|+.+|..++.++|.+...+.++..+|...|+|++|+..-.+.+++.|+.+..|..+|..++-.|+|++|+..|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+.|+.+|++ ..+..+++.++. -++ +. ...+ ..+..|..+...-....- -.+.+.......+..+|.
T Consensus 95 ~GL~~d~~n-~~L~~gl~~a~~--~~~--~~---~~~~----~~p~~~~~l~~~p~t~~~--~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 95 EGLEKDPSN-KQLKTGLAQAYL--EDY--AA---DQLF----TKPYFHEKLANLPLTNYS--LSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHhhcCCch-HHHHHhHHHhhh--HHH--Hh---hhhc----cCcHHHHHhhcChhhhhh--hccHHHHHHHHHhhcCcH
Confidence 777777777 555666665551 111 00 0000 112222222211111100 022222333333333443
Q ss_pred CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCC------------c---------hhHHHHHHHHHHHhcCCH
Q 002286 267 CAMALNYLANHFFFT----GQHFLVEQLTETALAVTNHGP------------T---------KSHSYYNLARSYHSKGDY 321 (942)
Q Consensus 267 ~~~~~~~la~~~~~~----g~~~~a~~~~~~~~~~~~~~~------------~---------~~~~~~~la~~~~~~g~~ 321 (942)
+...+..--.+.-.. |........-..........| + ...-.-.+|...+...++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 322211100000000 000000000000000000001 0 123356688888888999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEK 394 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~ 394 (942)
..|++.|..++.. . ....-+...+-+|+..|.+.+.+..+..+++..... ..++..+|..|.+.++++.
T Consensus 241 ~~a~q~y~~a~el---~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 241 ETAIQHYAKALEL---A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHhH---h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 9999999998863 3 445557778888999999988888888877754432 2344456667777888899
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (942)
|+.+|.+++..... ..++ .....++++...+...-+.|.. ..-...-|..++..|+|..|+.+|.+
T Consensus 317 ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999887765433 2333 4444555555544443333331 33444559999999999999999999
Q ss_pred HhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002286 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (942)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (942)
++. .+|+++..+.|.|.+|..+|.+..|+...+.+++
T Consensus 384 AIk-------------------------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 384 AIK-------------------------------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHh-------------------------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 998 5688999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHH
Q 002286 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (942)
Q Consensus 554 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (942)
.+|+...+|++.|.++....+|+.|++.|.++++.+|++.++...+..+...........+..++
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999888888887654333333444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-19 Score=189.65 Aligned_cols=414 Identities=20% Similarity=0.177 Sum_probs=295.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (942)
..++.-..+.++++-..-..+.... .-......+-.+.......|+++.+.+.|++++...-...+.|+.++.+|...
T Consensus 291 ~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 291 EESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA 370 (799)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh
Confidence 3444455556666555444433211 11234455667888889999999999999999988878889999999999999
Q ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH--hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---
Q 002286 390 GQIEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG--- 462 (942)
Q Consensus 390 g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 462 (942)
|....|+..++..+... |+++..+...+.++ ..+..++++.+..+++...........+..+..+|.+|..+-
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 99999999999999988 88888888888877 889999999999999997655555556788888888876442
Q ss_pred --------CHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 463 --------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 463 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
...++++.+++++. .+|.++.+.+.++.-
T Consensus 451 ~~~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLALQ 487 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHHH
Confidence 24567777777776 678899999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 613 (942)
|...++.+.|....++++..++ +++.+|..++.++...+++.+|+.+.+.++...|+|.........+-...++.++|+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 9999999999999999999955 568999999999999999999999999999999987665555555555556666655
Q ss_pred HHHHHhhccCC-------------------------C--Cchh-------------------------------------
Q 002286 614 ETFRAASDATD-------------------------G--KDSY------------------------------------- 629 (942)
Q Consensus 614 ~~~~~~~~~~~-------------------------~--~~~~------------------------------------- 629 (942)
......+..-. + .+..
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 55444332111 0 0000
Q ss_pred ----HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 630 ----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 630 ----~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
.+...+.. +... ++.++|..++.++-..+|-.++.++..|.++...|+..+|...|..++..+
T Consensus 648 ~~~~lwllaa~~-~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 648 LLQKLWLLAADL-FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHH-HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 00011111 1111 555666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCHHHHHH--HHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 706 SGSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 706 p~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
| +.+.+...+|.++...|+..-|.. +...+++. ++.++++|+++|.++.+.|+.+.|..+|..++.+.+++
T Consensus 715 P-----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 715 P-----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred C-----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 5 556666666666666666666666 66666666 55556666666666666666666666666666666666
Q ss_pred hhhHh
Q 002286 784 YTLRF 788 (942)
Q Consensus 784 ~~~~~ 788 (942)
|...|
T Consensus 788 PV~pF 792 (799)
T KOG4162|consen 788 PVLPF 792 (799)
T ss_pred Ccccc
Confidence 65544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=214.41 Aligned_cols=304 Identities=18% Similarity=0.173 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002286 378 TLKALGHIYVQL--GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 454 (942)
Q Consensus 378 ~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 454 (942)
.+..+|..|... -+..+|+..|.+.-...++...+...+|..| +.++|++|..+|+.+.+..|-.-+ ..+++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~--~meiy--- 393 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK--GMEIY--- 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--chhHH---
Confidence 444455544433 3456777777775566666666666677777 777777777777666665443211 11222
Q ss_pred HHHHHHcCCHHHHHHHH-HHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH
Q 002286 455 GVIHFEKGEFESAHQSF-KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (942)
..+++...+.- ++.++ +..++ .+|..+.+|..+|.
T Consensus 394 ST~LWHLq~~v-~Ls~Laq~Li~-------------------------------------------~~~~sPesWca~GN 429 (638)
T KOG1126|consen 394 STTLWHLQDEV-ALSYLAQDLID-------------------------------------------TDPNSPESWCALGN 429 (638)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHh-------------------------------------------hCCCCcHHHHHhcc
Confidence 22222222211 11222 12222 56777888888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHH
Q 002286 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613 (942)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 613 (942)
+|.-+++++.|++.|+++++++|....+|..+|.=+.....++.|..+|+.++..+|.+-.+|+.+|.+|.++++++.|.
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchH
Q 002286 614 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 693 (942)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~ 693 (942)
-.|++++.+.|. .......+|.+ +... |+.++|+.+|++|+.++|.|+...+..|.++...+++++
T Consensus 510 ~~fqkA~~INP~-nsvi~~~~g~~-~~~~------------k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 510 FHFQKAVEINPS-NSVILCHIGRI-QHQL------------KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred HHHHhhhcCCcc-chhHHhhhhHH-HHHh------------hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 888888888877 55556667777 7777 888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 694 A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
|+..++++.+..| +...+++.+|.+|...|+.+.|+..|.-|+...|.+.+
T Consensus 576 al~~LEeLk~~vP-----~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVP-----QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCc-----chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8888888888877 67788888888888888888888888888887655544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=213.71 Aligned_cols=302 Identities=20% Similarity=0.117 Sum_probs=235.8
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhhHhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGI 203 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~l 203 (942)
.....+..|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...+... ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3446777899999999999999999999999999999999999999999999999999999988543321 2457889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHF 278 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~la~~~ 278 (942)
|.+|...|++++|...|.++++.+|.+..++..++.++...|+ +++|+..+.++++..|.+.. .+..++..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999988876532 345667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcHHHHHHHcCC
Q 002286 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGD 357 (942)
Q Consensus 279 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~la~~~~~~g~ 357 (942)
...|++++|...+++++... |....+++.+|.++...|++++|+..|.+++.. .|.. ..++..++.++...|+
T Consensus 191 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCC
Confidence 77778888887777777643 445567777777777777777777777777753 2322 3445667777777777
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h--cCCHhHHHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKT 434 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~ 434 (942)
+++|+..+++++...|+...+ ..++.++...|++++|+..++++++..|++......++..+ . .|+..+++..+++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 777777777777777765433 67777777777777777777777777777765554444433 2 3467777777776
Q ss_pred HHHH
Q 002286 435 ARTL 438 (942)
Q Consensus 435 a~~~ 438 (942)
.++.
T Consensus 344 ~~~~ 347 (389)
T PRK11788 344 LVGE 347 (389)
T ss_pred HHHH
Confidence 6653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-21 Score=182.60 Aligned_cols=344 Identities=18% Similarity=0.187 Sum_probs=277.5
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|.+..-.+.+|..++..|.+..|+..|..++..+|++..+++..|.+|...|+-..|+.-+.+++++.|+. ..++...
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHHh
Confidence 456777888999999999999999999999999999999999999999999999999999999999999999 7789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
|.++.++|.++.|...|..++..+|++.... ..++.+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------- 155 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------- 155 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------------------------------------
Confidence 9999999999999999999999999754321 111111000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
..+......+...|+...|+.+....++ ..|..+..+...+.+|...|++..
T Consensus 156 -------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 156 -------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred -------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHH
Confidence 1122233445667888888888888887 567777888889999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002286 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~ 440 (942)
|+.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|+.-..+-.. .+..++.+
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y----------------KklkKv~K 271 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY----------------KKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH----------------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876554322 22211111
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCC
Q 002286 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (942)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (942)
. ..-+.-....++|.+++...++.++..|. .
T Consensus 272 ~----------les~e~~ie~~~~t~cle~ge~vlk~ep~---------------------------------------~ 302 (504)
T KOG0624|consen 272 S----------LESAEQAIEEKHWTECLEAGEKVLKNEPE---------------------------------------E 302 (504)
T ss_pred H----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------c
Confidence 1 01133345567888889999988884321 1
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHH
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 598 (942)
.+........+..++...|++.+|+....+++..+|+++.++...+..|.....|+.|+..|+++.+.++++..+...
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 222334455567788899999999999999999999999999999999999999999999999999999998776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=195.98 Aligned_cols=471 Identities=16% Similarity=0.144 Sum_probs=305.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
....|...+..|+|+.|+.+|..++.++|.|...+.....++...|+|++|+.--.+..+++|+. +..|...|..+.-+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhc
Confidence 45678899999999999999999999999999899999999999999999999999999999999 77799999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|+|++|+..|.+.|+.+|+|......++.++... + .+...| ..|..+..++..-.. ++......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~-----~-~~~~~~--------~~p~~~~~l~~~p~t--~~~~~~~~ 147 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED-----Y-AADQLF--------TKPYFHEKLANLPLT--NYSLSDPA 147 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH-----H-Hhhhhc--------cCcHHHHHhhcChhh--hhhhccHH
Confidence 9999999999999999999999998888887222 1 111111 112222222111000 00011112
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH-----HHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-----ALTNF 365 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~ 365 (942)
|...+......|.....+.. -.....|...+...-. . .....+......+.... .....
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~-------d~r~m~a~~~l~~~~~-------~--~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLN-------DPRLMKADGQLKGVDE-------L--LFYASGIEILASMAEPCKQEHNGFPII 211 (539)
T ss_pred HHHHHHHhhcCcHhhhcccc-------cHHHHHHHHHHhcCcc-------c--cccccccccCCCCCCcccccCCCCCcc
Confidence 22222222222222111111 0011111111110000 0 00000000000000000 00000
Q ss_pred HHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHc
Q 002286 366 EKVLE--IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA 442 (942)
Q Consensus 366 ~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~ 442 (942)
....+ ....-..-...+|....+..++..|+..|..++.++ .+...+...+-++ ..|.+...+.....+++.....
T Consensus 212 ~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 212 EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 00000 000012345677888888888888888888888888 7777777788888 8888877777776665543321
Q ss_pred CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCC
Q 002286 443 GEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520 (942)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (942)
... .-...+..+|..+...++++.|+.+|.+++....
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R----------------------------------------- 329 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR----------------------------------------- 329 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-----------------------------------------
Confidence 000 0123344466777888889999999998876210
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
. ..+.......+++........-.+|.-...-..-|..++..|+|..|+..|.+++..+|+++..|.+.+
T Consensus 330 ---t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 330 ---T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred ---C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 1 344445566677777777777777777666667788888888999999988888888888888888888
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.+|.+.|.+..|+...+.++++.|+ ..-+++.-|.+ +..+ ++|++|++.|+++++.+|++..+..+
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 8888888888888888888888776 66677777777 7777 88888888888888888888888887
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 002286 681 AGVVLAEKGQFDVSKDLFTQ 700 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~ 700 (942)
+..+...+.......++.++
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHh
Confidence 77777654333334444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=185.64 Aligned_cols=330 Identities=17% Similarity=0.219 Sum_probs=275.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHH
Q 002286 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (942)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~ 117 (942)
++.+-.+.+|..++..|++.+|+..|-.+++.+|+ ...+++..|..|+.+|+.. -|+.-+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~---------~Y~aifrRaT~yLAmGksk-----------~al~Dl 95 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN---------NYQAIFRRATVYLAMGKSK-----------AALQDL 95 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------hHHHHHHHHHHHhhhcCCc-----------cchhhH
Confidence 44556789999999999999999999999998874 3457788999999999987 799999
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H------------HHHHHHHHHhcCChHHHH
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---A------------LLGQACVEFNRGRYSDSL 182 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~------------~~~~a~~~~~~g~~~~A~ 182 (942)
.+++++.|+...+...+|.+++++|.+++|...|+.+++.+|++.. + +......++..|++..|+
T Consensus 96 ~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 96 SRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 9999999999999999999999999999999999999999996521 1 233445567789999999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 262 (942)
.....+++..|-+ +..+...+.||...|++..|+..+..+-++..++.+.++.++.++...|+ .+.++...+.+++
T Consensus 176 ~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLK 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHc
Confidence 9999999999998 78889999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCc
Q 002286 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEF 341 (942)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~ 341 (942)
++|++...+-.. +...+..+.++. +......++|.+++...++.++.-+. .+-.
T Consensus 252 ldpdHK~Cf~~Y-------KklkKv~K~les------------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 252 LDPDHKLCFPFY-------KKLKKVVKSLES------------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred cCcchhhHHHHH-------HHHHHHHHHHHH------------------HHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 999887544221 111222222222 23345678899999999999973222 1222
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
....-.+..++...|++.+|+..+..++..+|+++.++...+..|.-...|+.|+..|+++.+.++++..+...+
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 334556788999999999999999999999999999999999999999999999999999999999987765544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-19 Score=177.07 Aligned_cols=472 Identities=18% Similarity=0.198 Sum_probs=326.0
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
..|+..++.+.-+...|+..|.--..++++..|..+|++++..+..+...|+..+.+-++.+....|..++.+++..-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44555666666677889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 274 (942)
- ...|+.....--.+|+..-|.++|++.++..|+ ..+|......-++.+. .+.|...|++.+-.+|+ ...+...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKE---IERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhH---HHHHHHHHHHHheeccc-HHHHHHH
Confidence 8 777888888888999999999999999999996 6788888888888877 89999999998877754 4456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH
Q 002286 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (942)
Q Consensus 275 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~ 354 (942)
+..-...|+...+..+|+.++....++......+...|..-..+..++.|..+|.-++.
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld--------------------- 272 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD--------------------- 272 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 66666666666666666666655444433334444444444455555555555555554
Q ss_pred cCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH---HHH-----HHHHHHHHHhCcCcHHHHHHHHHHH-hcC
Q 002286 355 LGDFRSALTNFEKVLEIYPDN--CETLKALGHIYVQLGQI---EKA-----QELLRKAAKIDPRDAQAFIDLGELL-ISS 423 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~---~~A-----~~~~~~~l~~~p~~~~~~~~la~~~-~~~ 423 (942)
.-|.+ .+.+..+...--+-|+. +.+ .-.|++.++.+|.+.++|+.+-.+. ..|
T Consensus 273 ----------------~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 273 ----------------HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred ----------------hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 33333 12222222222222321 111 1234445555555555555555555 555
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCC----HHHHHHHHH-HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVP----IEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 498 (942)
+.+.-.+.|++++...|....... .-+|.+.+. .-....+.+.+.+.|+.+++.-|.
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH------------------ 398 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH------------------ 398 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc------------------
Confidence 555555556555554333211111 111222221 123457788888888888875331
Q ss_pred hHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH
Q 002286 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (942)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 578 (942)
..-....++...|....++.+...|.+++-.++..+|.+ ...-....+-.+.++++..
T Consensus 399 ---------------------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 399 ---------------------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred ---------------------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 111245677777888888899999999999999999976 4555556667788999999
Q ss_pred HHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHH
Q 002286 579 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 658 (942)
Q Consensus 579 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~ 658 (942)
..+|++.+...|.+..+|..+|.+-...|+++.|...|+-+++...- +..-++.-+ |... +...|.++
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpellwka---YIdF--------Ei~~~E~e 524 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELLWKA---YIDF--------EIEEGEFE 524 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHHHHH---hhhh--------hhhcchHH
Confidence 99999999999999999999999999999999999999988876432 333332222 3222 11227788
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 659 KAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 659 ~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
+|..+|++.|...+... +|...|
T Consensus 525 kaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HHHHHHHHHHHhcccch-HHHhHH
Confidence 88888888887766544 444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-22 Score=215.89 Aligned_cols=203 Identities=21% Similarity=0.225 Sum_probs=116.4
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCC
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~ 424 (942)
.+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+....
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------- 104 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------- 104 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-------------
Confidence 4445666666666666666666666666666666666666666666666666666665543211110
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (942)
....++..+|.++...|++++|+..|.+++.
T Consensus 105 ---------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~---------------------------- 135 (389)
T PRK11788 105 ---------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVD---------------------------- 135 (389)
T ss_pred ---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----------------------------
Confidence 0123445556666666666666666666655
Q ss_pred hhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCChhHHH
Q 002286 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLSI 579 (942)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~A~ 579 (942)
..|....++..++.++...|++++|+..+..++...|.+. ..+..+|.++...|++++|+
T Consensus 136 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 136 ---------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred ---------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2334455566666666666666666666666666555431 23445555566666666666
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCC
Q 002286 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (942)
Q Consensus 580 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 624 (942)
.+++++++.+|++..++..+|.++...|++++|+..|++++...|
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 666666666665555555555555555555555555555544433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-19 Score=188.61 Aligned_cols=441 Identities=17% Similarity=0.142 Sum_probs=330.8
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~l 203 (942)
+++..|-.+...+...|++..+.+.|++++...-.....|+.++.++...|.-..|+.+.+..+... |+++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5777888889999999999999999999998887888999999999999999999999999999988 77766666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHhhcc--------HHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
..|+...|..++++.+-.+++.... -.+.++..+|.+|...-. ..-..++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 7788889999999999999998432 135567777777755422 122678899999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHH
Q 002286 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (942)
Q Consensus 271 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 350 (942)
.++++.-|...++.+.|......++...+ ...+.+|..++.++...+++.+|+.....++..+ +++.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhhh
Confidence 99999888888888888888888887632 3445788888888888888888888888888744 344444455556
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH-hcC---CH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAFIDLGELL-ISS---DT 425 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~-~~~---~~ 425 (942)
+-...++.++|+..+...+........+-..++ .|....-..-+.-+.. +|.+. .....+.... ..+ .+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~-----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLD-----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh-----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhccc
Confidence 666678888888888887776544444333333 1111100000000111 11111 1111111111 000 00
Q ss_pred hHHHHHHHHHHHHHHHc-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 426 GAALDAFKTARTLLKKA-GEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
+.. +...... ++.. ...+|...+..+...++.++|..++.++..
T Consensus 630 e~~-------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------------ 678 (799)
T KOG4162|consen 630 ELK-------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK------------------------ 678 (799)
T ss_pred ccc-------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh------------------------
Confidence 000 0000000 0000 135677788899999999999999999987
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
..|..+.+++..|.++...|+..+|.+.|..++..+|+++.+...+|.++...|+..-|..
T Consensus 679 -------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 679 -------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred -------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 5678999999999999999999999999999999999999999999999999999888888
Q ss_pred --HHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCc
Q 002286 581 --LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (942)
Q Consensus 581 --~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 627 (942)
.+..+++.+|.++++|+.+|.++.+.|+.+.|.++|..++++.++..
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999999999999876633
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-19 Score=171.69 Aligned_cols=419 Identities=15% Similarity=0.094 Sum_probs=301.9
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
......+.||...++-+.|+.........- ..+.....++..+..-++ -.++.-.+...+...|--..+...++..
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r---~~~~vl~ykevvrecp~aL~~i~~ll~l 173 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSR---HKEAVLAYKEVIRECPMALQVIEALLEL 173 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhcccc---ccHHHHhhhHHHHhcchHHHHHHHHHHH
Confidence 345556667777777777666554432211 133444455555544444 2344444444444444222221111111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCC
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~ 357 (942)
-. .|. + .-..--..+...+..|. ......+.+.+..++...|...+--+-. ...-++++.....+|.+++..|+
T Consensus 174 ~v-~g~-e-~~S~~m~~~~~~~~~dw--ls~wika~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 174 GV-NGN-E-INSLVMHAATVPDHFDW--LSKWIKALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred hh-cch-h-hhhhhhhheecCCCccH--HHHHHHHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcC
Confidence 00 000 0 00011111111212221 1222234444455555555444433322 11457778888899999999999
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 436 (942)
+.+|+..|+++...+|.+...+-..|.++...|+++.-.......+..+.....-|+.-+.++ ..+++..|+.+-++++
T Consensus 248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred chHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988888888888766677777777766 9999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCC
Q 002286 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (942)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (942)
+..+. +...+...|.++...|+.++|+-.|+.+..
T Consensus 328 ~~~~r-----~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---------------------------------------- 362 (564)
T KOG1174|consen 328 DSEPR-----NHEALILKGRLLIALERHTQAVIAFRTAQM---------------------------------------- 362 (564)
T ss_pred ccCcc-----cchHHHhccHHHHhccchHHHHHHHHHHHh----------------------------------------
Confidence 87655 567888889999999999999999999988
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhhcCCChh
Q 002286 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAK-ARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
..|....++..+..+|...|.+.+|.-..+.++...|.++.++..+| .++. .-.--++|.+++++++.+.|....
T Consensus 363 ---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 363 ---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred ---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 56778899999999999999999999999999999999999988886 4433 334457899999999999999999
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC
Q 002286 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674 (942)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 674 (942)
+...++.++...|.+..++..+++.+...+ |...+..||++ +... +.+.+|++.|..+++++|++
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999998876 55667789999 8887 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 002286 675 LYAANGAGVVLAEKG 689 (942)
Q Consensus 675 ~~a~~~la~~~~~~g 689 (942)
..+.-++-.+-.+..
T Consensus 505 ~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 505 KRTLRGLRLLEKSDD 519 (564)
T ss_pred hHHHHHHHHHHhccC
Confidence 888877755544433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-18 Score=167.73 Aligned_cols=432 Identities=16% Similarity=0.101 Sum_probs=323.2
Q ss_pred HHHHHHHHHHHHHHhhc--------------------CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 107 EEHFILATQYYNKASRI--------------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~--------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 166 (942)
+..|..|...|..++.+ .|.+.......+.+|...|+-+.|+.....+...- ..+...+
T Consensus 56 ~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inl 134 (564)
T KOG1174|consen 56 ERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINL 134 (564)
T ss_pred HHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHH
Confidence 45566666666666543 23455667778899999999999998887654322 2456667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHH
Q 002286 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR-YKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDL 242 (942)
Q Consensus 167 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~ 242 (942)
.++..+..-++-.++.-.|..++...|-. +-.++..+ ....-++.+-- --.++...|..+..| ..++.+..
T Consensus 135 Mla~l~~~g~r~~~~vl~ykevvrecp~a----L~~i~~ll~l~v~g~e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~ 209 (564)
T KOG1174|consen 135 MLARLQHHGSRHKEAVLAYKEVIRECPMA----LQVIEALLELGVNGNEINSL-VMHAATVPDHFDWLSKWIKALAQMFN 209 (564)
T ss_pred HHHHHHhccccccHHHHhhhHHHHhcchH----HHHHHHHHHHhhcchhhhhh-hhhheecCCCccHHHHHHHHHHHHHh
Confidence 77777777677667777777777665533 11111111 11111221111 112334445444332 23333433
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHH
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (942)
..+. +.-+..++-.-....|++...+..+|.+++..|++.+|+..|+++.... |....+.-..|..+...|+++
T Consensus 210 ~~hs---~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 210 FKHS---DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred cccc---hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHh
Confidence 3333 5555566666677789999999999999999999999999999888644 666677777888888899988
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (942)
Q Consensus 323 ~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 402 (942)
+--.+....+. ........|+--+...+..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.|+.+
T Consensus 284 ~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 284 QDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 87777777665 334555668888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH-HHHcCCHHHHHHHHHHHhhcch
Q 002286 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG-VI-HFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 403 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~-~~-~~~~g~~~~A~~~~~~al~~~~ 479 (942)
..+.|.+...|..+..+| ..|.+.+|....+.+++.++. +...+..+| .+ +...---++|.+++++++.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 999999999999999999 999999999999999998887 466676665 33 3344456788899998888
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 559 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (942)
..|....+...+|.++...|.+..++.++++.+...|+.
T Consensus 433 ----------------------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 433 ----------------------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred ----------------------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-
Confidence 678888888899999999999999999999999988876
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
..+..||.++...+.+.+|+.+|..++.++|++..+...+-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 6788899999999999999999999999999887766554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-16 Score=156.88 Aligned_cols=465 Identities=15% Similarity=0.162 Sum_probs=261.9
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHH
Q 002286 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (942)
Q Consensus 32 ~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~ 111 (942)
-++-..-+...|+..|.--..|+++..|..++++++..+. ..+.++...+.+-++. ....
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~---------r~itLWlkYae~Emkn-----------k~vN 124 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY---------RNITLWLKYAEFEMKN-----------KQVN 124 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---------ccchHHHHHHHHHHhh-----------hhHh
Confidence 3444455566777777777777777777777777776542 1233333333333332 2333
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.|..++++++.+-|.-...|+....+--..|+..-|.++|++-+...| +..+|......-.+-++.+.|..+|++.+-.
T Consensus 125 hARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~ 203 (677)
T KOG1915|consen 125 HARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLV 203 (677)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee
Confidence 677777777777777777777777777777777777777777777776 3566766666666777777777777777777
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+|+. ..|+..+..-.+.|+..-|..+|++|++.-.++..+ +...+..-..+.. ++.|.-.|.-++..-|.+.
T Consensus 204 HP~v--~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE---~ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 204 HPKV--SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE---YERARFIYKYALDHIPKGR 278 (677)
T ss_pred cccH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCccc
Confidence 7664 446666777777777777777777777665443322 3334444444444 6777777777777666652
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 002286 269 --MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (942)
Q Consensus 269 --~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 346 (942)
..+..+...--+-|+........-. +-.--|+..+. .+|.+..+|+
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~-----------------------------KRk~qYE~~v~---~np~nYDsWf 326 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVG-----------------------------KRKFQYEKEVS---KNPYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhh-----------------------------hhhhHHHHHHH---hCCCCchHHH
Confidence 2333332222233333221111100 00011222232 3444445555
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------HHHHHHH-HHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCE---------TLKALGH-IYVQLGQIEKAQELLRKAAKIDPRD----AQA 412 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~----~~~ 412 (942)
..-.+-...|+.+.-.+.|++++...|...+ .|.+.+. .-....+.+.+.++|+.++++-|.. +..
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKi 406 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKI 406 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHH
Confidence 5444444555555555555555554443221 1111111 0112355666666666666665542 445
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccch
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 491 (942)
|+..+... .+.+...|...+-.++...|+ ..++.....+-.+.++++....+|++.+.
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIelElqL~efDRcRkLYEkfle--------------- 465 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIELELQLREFDRCRKLYEKFLE--------------- 465 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHHHHHHhhHHHHHHHHHHHHh---------------
Confidence 55555555 556666666666666555443 34444445555566666666666666666
Q ss_pred hhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--H
Q 002286 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI--A 569 (942)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~ 569 (942)
..|.+..++...|.+-..+|+.+.|..+|+-++....-+..-++..+.+ -
T Consensus 466 ----------------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE 517 (677)
T KOG1915|consen 466 ----------------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFE 517 (677)
T ss_pred ----------------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh
Confidence 4566666677777777777777777777776666543333323333322 3
Q ss_pred HHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhc
Q 002286 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (942)
Q Consensus 570 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 604 (942)
...|.++.|..+|++.+...+... +|...+.+-.
T Consensus 518 i~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 518 IEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred hhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 456677777777777776665544 5555555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-21 Score=195.68 Aligned_cols=265 Identities=20% Similarity=0.253 Sum_probs=121.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHH
Q 002286 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (942)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (942)
..++.+++..|++++|+..+.+.+... .+|.++..+..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 356999999999999999997765521 246788889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHH
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (942)
|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|+.++.++.+.. .++..+..+..++...|++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999998889899888 79999999999999988766 457777788888999999999
Q ss_pred HHHHHHHhhccCC-CCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 002286 612 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (942)
Q Consensus 612 A~~~~~~~~~~~~-~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 690 (942)
+...++.+....+ ..+...+..+|.+ +... |+.++|+..|+++++.+|+++.+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776442 3467778889998 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHH
Q 002286 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (942)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 770 (942)
.+++...+.......| .++..|..+|.++..+|++++|+.+|+++++. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 78889999999999999999999999999998 6788999999999999999999999
Q ss_pred HHHHHHHHh
Q 002286 771 KSLLRAIHL 779 (942)
Q Consensus 771 ~~~~~al~~ 779 (942)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999888753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-17 Score=154.40 Aligned_cols=450 Identities=15% Similarity=0.163 Sum_probs=262.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHH
Q 002286 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A 253 (942)
...+|..|+.+++-.+..+.+....+...+|.|++.+|+|++|...|+-+.+.+.-+.+.+..|+.+++-.|. |.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HHHH
Confidence 4455556665555555444333234445566666666666666666665555444445555555555555554 5544
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.....+ .|++|.... .+-.+.++.|+-++-. .|...++
T Consensus 111 ~~~~~k----a~k~pL~~R-------------------------------------LlfhlahklndEk~~~-~fh~~Lq 148 (557)
T KOG3785|consen 111 KSIAEK----APKTPLCIR-------------------------------------LLFHLAHKLNDEKRIL-TFHSSLQ 148 (557)
T ss_pred HHHHhh----CCCChHHHH-------------------------------------HHHHHHHHhCcHHHHH-HHHHHHh
Confidence 443332 233321111 1111122233322222 2222221
Q ss_pred hcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Q 002286 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (942)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 413 (942)
+...-...++.+.+..-.|++|+..|.+++..+|+.......++.||.++.-++-+.+++.-.++..|+++.+.
T Consensus 149 ------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 149 ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred ------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 22234566778888888889999999999888888888888899999999999999999888888889888777
Q ss_pred HHHHHHH-h--cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccc
Q 002286 414 IDLGELL-I--SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 490 (942)
Q Consensus 414 ~~la~~~-~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 490 (942)
...+... . .|+..++ -..... ..... .+..+....+.-+
T Consensus 223 NLkacn~fRl~ngr~ae~--E~k~la---dN~~~------------------~~~f~~~l~rHNL--------------- 264 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAED--EKKELA---DNIDQ------------------EYPFIEYLCRHNL--------------- 264 (557)
T ss_pred HHHHHHHhhhhccchhHH--HHHHHH---hcccc------------------cchhHHHHHHcCe---------------
Confidence 6666544 2 2332221 111111 00000 0111111111000
Q ss_pred hhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002286 491 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 570 (942)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 570 (942)
.--.+-+.|++.+-.++..-| ++..+++..|.
T Consensus 265 ---------------------------------------------VvFrngEgALqVLP~L~~~IP---EARlNL~iYyL 296 (557)
T KOG3785|consen 265 ---------------------------------------------VVFRNGEGALQVLPSLMKHIP---EARLNLIIYYL 296 (557)
T ss_pred ---------------------------------------------EEEeCCccHHHhchHHHhhCh---Hhhhhheeeec
Confidence 001122334444443333333 45555555566
Q ss_pred HcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccch-------HHHHHHHHHhhccCCCC-chhHHHhhhhHHHHHH
Q 002286 571 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-------VKAKETFRAASDATDGK-DSYATLSLGNWNYFAA 642 (942)
Q Consensus 571 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~y~~~ 642 (942)
++++..+|+.+.+. ++|..|.-+...|.++...|+- .-|...|.-+-.....- .....-+++.. ++..
T Consensus 297 ~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~ 372 (557)
T KOG3785|consen 297 NQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS 372 (557)
T ss_pred ccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH
Confidence 66666666555443 4555665555555555555542 23333333222211111 12223345666 7777
Q ss_pred HhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 002286 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 722 (942)
Q Consensus 643 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~ 722 (942)
.++++.+.++...-...-++.....++|.+....|++.+|.+.|-++....- .+.......+|.
T Consensus 373 ------------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LAr 436 (557)
T KOG3785|consen 373 ------------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLAR 436 (557)
T ss_pred ------------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHH
Confidence 8899999988888777788888888999999999999999999988854331 123444557899
Q ss_pred HHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 723 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 723 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
||...|++..|..+| ++.......-..+..++..+++.|.+--|-+.|...-.++|+.
T Consensus 437 Cyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 999999999998886 4432122225666778999999999999999999988888864
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-18 Score=182.20 Aligned_cols=306 Identities=14% Similarity=0.075 Sum_probs=238.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
....|...+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..++.++.+..|++...+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 36678889999999999999999999999888888999999999999999999999999988888445666679999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (942)
|+++.|...++++++..|+++.++..++.++...|+ +++|...+.+..+..+.++.... .........+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999887555443332 11222233334444
Q ss_pred HHHHHHHHHhcCC-CCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 287 a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
+...+..+....+ ..+.++..+..++..+...|++++|...+.++++..++++..... ..........++...++..+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHH
Confidence 4445555554332 223567888889999999999999999999999844332221101 22233334457888899999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002286 366 EKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 366 ~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (942)
++.++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|+... +..+|.++ ..|+.++|..++++++...-
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999999 888899999999999999999999 57777887665 45888888 89999999999988876644
Q ss_pred H
Q 002286 441 K 441 (942)
Q Consensus 441 ~ 441 (942)
.
T Consensus 402 ~ 402 (409)
T TIGR00540 402 A 402 (409)
T ss_pred c
Confidence 3
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=168.12 Aligned_cols=419 Identities=16% Similarity=0.136 Sum_probs=304.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHH-HHHhC--CCC----
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--------GRYSDSLEFYKR-ALQVH--PSC---- 195 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~-~l~~~--p~~---- 195 (942)
-+.++..++....|+...+++..+++..|++-.+|..++.++... .+-..|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 356788899999999999999999999999988998888887654 222344444432 22221 111
Q ss_pred ---c-----hh-----------hHhhHHHH-HHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhccHHhHHHH
Q 002286 196 ---P-----GA-----------IRLGIGLC-RYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKG 253 (942)
Q Consensus 196 ---~-----~~-----------~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~A 253 (942)
+ .. .....+.. -.+-|..+.|+..-..+..-.|- ...-...+|..-...+..+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG----- 161 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDG----- 161 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCc-----
Confidence 0 00 00001111 12233444444332222111110 0111223333333322211
Q ss_pred HHHHHHHHHhCCC----CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCch---hHHHHHHHHHHHhcCCH
Q 002286 254 MEKMQRAFEIYPY----CAMA-LNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTK---SHSYYNLARSYHSKGDY 321 (942)
Q Consensus 254 ~~~~~~~~~~~p~----~~~~-~~~la~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~---~~~~~~la~~~~~~g~~ 321 (942)
-|-.+-+++|+ .+.. ....-.+|+..++...|-.+....+..... .... ...-..+|.+|...|-+
T Consensus 162 --~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~ 239 (478)
T KOG1129|consen 162 --KFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMP 239 (478)
T ss_pred --ceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcCh
Confidence 11122223322 2222 222234566677777776655554432111 1111 12234589999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (942)
.+|.+.++.++.. ...+..+..|+.+|....++..|+..+...++..|.+...+...+.++..+++.++|.++|+.
T Consensus 240 r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~ 315 (478)
T KOG1129|consen 240 RRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL 315 (478)
T ss_pred hhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence 9999999999964 445667888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchh
Q 002286 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (942)
Q Consensus 402 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 480 (942)
+++.+|.+.++.-.++.-| -.++++-|+.+|++.+++--. +++++.++|.+++-.++++-++..|++++....
T Consensus 316 vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat- 389 (478)
T KOG1129|consen 316 VLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT- 389 (478)
T ss_pred HHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-
Confidence 9999999999999999888 899999999999999987443 689999999999999999999999999998532
Q ss_pred hhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHH
Q 002286 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560 (942)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 560 (942)
.+.....+|+++|.+....|++..|...|+-++..+|++.+
T Consensus 390 ---------------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 390 ---------------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred ---------------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 34456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc
Q 002286 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (942)
Q Consensus 561 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 605 (942)
++.+|+.+..+.|+.++|..+++.+....|+-.+..++++.+-..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 999999999999999999999999999999988888777655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-14 Score=149.03 Aligned_cols=665 Identities=14% Similarity=0.105 Sum_probs=437.3
Q ss_pred ccCChHHHHHHHHHHHHcCCH-HHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhh-hhhhhhHHHHHHH
Q 002286 36 EQAPLDLWLIIAREYFKQGKV-EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE-TKQREKEEHFILA 113 (942)
Q Consensus 36 ~~~~~~~~~~~a~~y~~~g~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~-~~~~~~~~~~~~A 113 (942)
.|-+...|+.... +++|.. .+-..+|++++..-|.+ +.+..-|++.-... ...-..+..|..-
T Consensus 23 np~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp~s-------------ykiW~~YL~~R~~~vk~~~~T~~~~~~v 87 (835)
T KOG2047|consen 23 NPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELPGS-------------YKIWYDYLKARRAQVKHLCPTDPAYESV 87 (835)
T ss_pred CchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCCCc-------------hHHHHHHHHHHHHHhhccCCCChHHHHH
Confidence 4667788987543 334443 44455778888765532 12233333211100 0000124455666
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
-.+|++++-.-..-|..|+.....+..+|+...-...|++++..-|- +...|-..-......|-.+-++..|++-++.
T Consensus 88 n~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 67777777665667889999999999999999999999999988773 3445555555566778888999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.|.. .......+...++.++|.+.+...+.. .|.+...|..+..+.....+...--.--..++..+...
T Consensus 168 ~P~~----~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 APEA----REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred CHHH----HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 9987 333456677899999999999998764 34566778877777766544222222334556666667
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhcCCCCCc
Q 002286 265 PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKPHEF 341 (942)
Q Consensus 265 p~~~-~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--a~~~~~~~~~~ 341 (942)
++.. ..|..||..|.+.|.+++|..+|+.++...-.-.+...++...+ .|++..-...- +.....+..+.
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhhh
Confidence 7654 68889999999999999999999999875433222222222211 12221111110 11111111111
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCc-----HHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRD-----AQAFID 415 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~-----~~~~~~ 415 (942)
...-..++..-.-......- .=.-++..+|++...|.....+ ..|+..+-+..|..++. .+|.- ...|..
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 11112222211111111110 1112356688888888776555 46788888899988875 45543 568999
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhh--hccccccchh
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT--LLDSKTKTYV 492 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~ 492 (942)
+|.+| ..|+.+.|...|+++....-. ....-..+|...|..-....+++.|+.+.+.+...+.... ..++...
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p--- 468 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP--- 468 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc---
Confidence 99999 999999999999998864211 1111247888889889999999999999999987543211 1111100
Q ss_pred hhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 572 (942)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 572 (942)
.+. .--.+..+|..++......|-++.....|++++.+---.+....+.|..+...
T Consensus 469 -------vQ~-----------------rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 469 -------VQA-----------------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred -------HHH-----------------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000 00125567888899999999999999999999998888888999999999999
Q ss_pred CChhHHHHHHHHHHhhc--CCChhHHHHhhhhhc---cccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhh
Q 002286 573 NNLQLSIELVNEALKVN--GKYPNALSMLGDLEL---KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (942)
Q Consensus 573 ~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~ 647 (942)
.-++++.+.|++.+.+. |.-.++|..+-.-.. ..-..+.|...|+++++..|+......+.+ |...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl----YA~l----- 595 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL----YAKL----- 595 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHH-----
Confidence 99999999999999987 444556654433322 234689999999999998775444332221 2222
Q ss_pred cChhHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 002286 648 RAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (942)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (942)
+.+-|-...|+++|+++-..- +.+...++++-+.-. ..--...-..+|+++++..|++ .........+..-.
T Consensus 596 ---EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 596 ---EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLET 669 (835)
T ss_pred ---HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhh
Confidence 111188899999999987644 334444443322111 1223456688999999998854 34556677899999
Q ss_pred HhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 002286 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773 (942)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 773 (942)
..|..+.|...|.-+-+..+...++..+...-..-.+.|+-+.-++.+
T Consensus 670 klGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999888766666888887777778889855444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=192.06 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=93.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 167 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
.+|.+++..|++++|+.++.+.+... |++ +..|..+|.+...+++++.|+..|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666664443332 333 45555566666666666666666666666666555555555555 444
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHH
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (942)
++ +++|+..+.++++..+ ++..+...+.++...++++++..+++.+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44 6666666665555442 34444455555566666666666666655322 2234556677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (942)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 404 (942)
+..|+++++ ..|++..+...++.+++..|+++++...+....+..|+++..+..+|.++..+|++++|+.+|+++++
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 777777776 45666666777777777777777777777777776677777777777777777777777777777777
Q ss_pred hCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHH
Q 002286 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (942)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 438 (942)
.+|+++.++..+|.++ ..|+.++|..++.++...
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 7777777777777777 777777777777766543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-18 Score=191.14 Aligned_cols=270 Identities=11% Similarity=-0.003 Sum_probs=172.7
Q ss_pred cCCCCcc--hHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHH
Q 002286 123 IDMHEPS--TWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRA 188 (942)
Q Consensus 123 ~~p~~~~--~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~ 188 (942)
..|.+.+ .++.+|..++.. +.+++|+..|+++++.+|+++.++..+|.++... +++.+|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3444443 344455544433 3467888888888888888888887777766533 3367888888888
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
++.+|++ +.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ +++|+..++++++++|.++
T Consensus 331 l~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 331 TELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRA 406 (553)
T ss_pred HhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCh
Confidence 8888887 66677788888888888888888888888888888888888888888887 8888888888888888777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
.....++..++..|++++|+..+.+++... +|..+..+..+|.++...|++++|...+.++.. ..|....+...+
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l 481 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLL 481 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHH
Confidence 555555555555666666666666555432 133445566666666666666666666665544 344445555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 404 (942)
+..|...|+ .|...++++++.....+.-......+|.-.|+.+.+... +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 555555553 555555555443222222222255555556665555555 44443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=163.48 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=239.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 136 QLLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.+++..++...|-..+...+..+ |. +..--..+|.||++.|-+.+|.+.++..++..|-. +.+..++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 45566677777776666655432 21 11223568999999999999999999999988764 66788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
+|.+..++..|+..|...++..|.++..+...+.++...++ +++|+++|+.+++.+|.+.++....+.-|+..++++
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
-|+.+|.++++.. ...++.+.++|.+++..++++-++..|.+++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMG---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhc---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 9999999999877 4445899999999999999999999999999866566777888999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 418 (942)
+-++..+|++.+++.++|.+-.+.|+.++|..++..+....|+-.+..++++.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 99999999999999999999999999999999999999999987776666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-16 Score=171.02 Aligned_cols=296 Identities=13% Similarity=0.058 Sum_probs=227.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
.+..|...+..|++++|.+.+.+.....+.....+...+......|+++.|..+|.++.+.+|+.........+..+...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45677788889999999988887655443333344444666699999999999999999988887444445568899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH--------HHHHHHhcC
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 282 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--------la~~~~~~g 282 (942)
|+++.|...++++.+.+|+++.++..++.++...|+ +++|+..+.+..+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 999999999888877665543221 111111222
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHH
Q 002286 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (942)
+.+....+++.. +...|.++.....++..+...|+.++|...+.++++ .++ ....... ......+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l--~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLL--IPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHH--HhhccCCChHHHH
Confidence 223333333332 223366778999999999999999999999999986 222 2222222 2223458999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002286 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (942)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (942)
..+++.++.+|+++..+..+|.++...|++++|..+|+++++..|++.. +..++.++ ..|+.++|..+|++++...
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999997654 56789999 9999999999999887754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=185.86 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=161.0
Q ss_pred hCCCCHHH--HHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc---------CCHHHHHHHHHH
Q 002286 157 ADRDNVPA--LLGQACVEFN---RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQR 222 (942)
Q Consensus 157 ~~p~~~~~--~~~~a~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~ 222 (942)
..|.+..+ ++..|..+.. .+++++|+.+|+++++.+|++ +.++..+|.|+... +++++|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555443 3444544433 356789999999999999999 77788999888744 348999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 002286 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (942)
Q Consensus 223 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~ 302 (942)
+++++|+++.++..+|.++...|+ +++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999999 9999999999999999999777777777777777766666666666554 2
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 002286 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (942)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (942)
..+..++.++.+++..|++++|+..+.+++.. .+|..+.++..+|.++...|++++|...+.++....|....+...+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 22233334444455555566666665555542 1244444455555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l 403 (942)
+..|...|+ .|...+++++
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHhccHH--HHHHHHHHHH
Confidence 555555552 4444444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-16 Score=169.44 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+|++..|.+.+.++.+..|.....++..|.++..+|+++.|...+.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666999999999999998888889999999999999999999999999999875 56777899999999999999999
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
+.+++..|++ +.++..++.++...|+++.|...+.+..+..+.++.... ....-....+. .+++...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 678899999999999999999999999987555444332 11111123333 455666777888
Q ss_pred HhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 002286 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (942)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 337 (942)
...| +++..+..++..+...|+++.|...++++++..++++.... ...........++.+.+...++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 58999999999999999999999999999987644432111 12333344556889999999999998 5
Q ss_pred CCCch--hhhhcHHHHHHHcCChHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
.|+++ .....+|.+++..|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|..++++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666 778899999999999999999999 57778888766 559999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-13 Score=138.77 Aligned_cols=595 Identities=12% Similarity=0.118 Sum_probs=339.1
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHH--cC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLA--KG------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~--~g------~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
.-+|+++++.-|.+...|+..-..-.. .+ -|..--.+|++++-.-.+-+..|+.....+..+|+...-...|
T Consensus 46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf 125 (835)
T KOG2047|consen 46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF 125 (835)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence 345555555555555555433211111 11 2333344444544444444555555555555555555555555
Q ss_pred HHHHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 186 KRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 186 ~~~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.++|..-|-. ...+|-..-......|-++-++..|++.++.+|...+-+ ...+...++ .++|.+.+...+..+
T Consensus 126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eey---ie~L~~~d~---~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEY---IEYLAKSDR---LDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHH---HHHHHhccc---hHHHHHHHHHhcCch
Confidence 5555554432 112222222333344445555555555555555432221 222233333 555555555444321
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 002286 265 -------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (942)
Q Consensus 265 -------p~~~~~~~~la~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 334 (942)
+.+...|..+..+....-+.-. ...++...+... .......|..+|..|.+.|.++.|...|++++..
T Consensus 200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3333444444444433333222 222222222221 1112344555555555555555555555555543
Q ss_pred cCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH--h--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
.-...++...+-. |. .+++....+.--+. . ++ +..+.-..++..-.-+.....- .-.-++..+|++
T Consensus 278 v~tvrDFt~ifd~----Ya---~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~n 348 (835)
T KOG2047|consen 278 VMTVRDFTQIFDA----YA---QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL--LNSVLLRQNPHN 348 (835)
T ss_pred heehhhHHHHHHH----HH---HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCCcc
Confidence 2222222222111 11 01110000000000 0 00 0111111222211111111110 011234567888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccc
Q 002286 410 AQAFIDLGELLISSDTGAALDAFKTARTLLK-KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (942)
Q Consensus 410 ~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 488 (942)
...|.....++ .|+..+-+..|..++.... ......+..+|...|.+|...|+.+.|...|+++...+..
T Consensus 349 V~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-------- 419 (835)
T KOG2047|consen 349 VEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-------- 419 (835)
T ss_pred HHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc--------
Confidence 88887776665 5678888888888877543 3233334588999999999999999999999999884210
Q ss_pred cchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC-----------
Q 002286 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD----------- 557 (942)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------- 557 (942)
.-.+-..+|...|..-....+++.|..+.+.+......
T Consensus 420 -------------------------------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 420 -------------------------------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred -------------------------------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 11234678888999999999999999999988753211
Q ss_pred -------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhH
Q 002286 558 -------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (942)
Q Consensus 558 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 630 (942)
+...|..++.+....|-++.....|++++.+---.|.+..++|.++....-++++.+.|++.+.+.+-+..+-
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1456677777788889999999999999999988999999999999999999999999999999886655432
Q ss_pred HHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Q 002286 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 708 (942)
Q Consensus 631 ~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 708 (942)
+.+. |+...-..- ...+.+.|..+|++++...|.. -..+...+..-.+-|-...|+.+|+++-...+
T Consensus 549 ---iW~t-YLtkfi~ry-----gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~-- 617 (835)
T KOG2047|consen 549 ---IWNT-YLTKFIKRY-----GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK-- 617 (835)
T ss_pred ---HHHH-HHHHHHHHh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC--
Confidence 3333 433311111 1156899999999999988742 22344445566677999999999999877553
Q ss_pred CCCCchhHHHHHHHHHHH-----hcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 709 VFVQMPDVWINLAHVYFA-----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 709 ~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
+.-.+.+-.+|.. -| ...-...|++|++..|+..-...-...+..-.+.|..+.|..+|.-.-++.|.
T Consensus 618 -----~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 618 -----EAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred -----HHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 2223333333322 12 23456789999998665555666677788888999999999999887777553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-15 Score=145.42 Aligned_cols=379 Identities=15% Similarity=0.141 Sum_probs=258.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHH
Q 002286 137 LLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (942)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (942)
-++...+|..|+.+++..+..+... ...-..+|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 3456678999999998887655433 3567788999999999999999999888743 3347889999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 216 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
|...-.+ .|+++-....+-.+..+.++ ++-+..|...+.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklnd----Ek~~~~fh~~Lq--------------------------------- 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLND----EKRILTFHSSLQ--------------------------------- 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCc----HHHHHHHHHHHh---------------------------------
Confidence 9887665 57777777777777777776 222222222111
Q ss_pred hcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
+..+-...++.+.+..-.|.+|++.|.+.+. ++|+.......++.+|.++.-|+-+.+.+.-.+...|+.
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1113345667777777788999999999987 777877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 453 (942)
+.+....+....+.=.-..|..-....... +...+.+-..+-.-+ --.+-+.|+..+-..++. -|++..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--------IPEARlN 290 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--------IPEARLN 290 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--------ChHhhhh
Confidence 999888888877763333343333333321 111122211111111 122345555555544443 3566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH
Q 002286 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533 (942)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 533 (942)
+...|.++++..+|....+. .+|..+.-+...|.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgv 324 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGV 324 (557)
T ss_pred heeeecccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHH
Confidence 88888888888888877765 45666666777777
Q ss_pred HHhhcCCHHHHHHHHHHHH---HhC------CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhc
Q 002286 534 LLEQIHDTVAASVLYRLIL---FKY------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (942)
Q Consensus 534 ~~~~~g~~~~A~~~~~~~l---~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 604 (942)
++...|+--...+.++-+- ..- -+.......++..++-..++++.+.+++..-....++....++++.+++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 7777776544443333222 211 1223445566666666777888888887777777777777778888888
Q ss_pred cccchHHHHHHHHHhhc
Q 002286 605 KNDDWVKAKETFRAASD 621 (942)
Q Consensus 605 ~~g~~~~A~~~~~~~~~ 621 (942)
..|++.+|.+.|-++..
T Consensus 405 atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISG 421 (557)
T ss_pred HhcChHHHHHHHhhhcC
Confidence 88888888887776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-16 Score=166.84 Aligned_cols=297 Identities=14% Similarity=0.115 Sum_probs=235.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHh
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQ 243 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~ 243 (942)
.+..|...+..|+|+.|.+...+.-...+. +...+...+......|+++.|..+|.++.+.+|++..+. ...+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345566777789999999888776554333 244444456666999999999999999999999986443 455899999
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH-----HHHHHHHHHHhc
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 318 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~la~~~~~~ 318 (942)
.|+ +++|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999876654433222 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (942)
Q Consensus 319 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (942)
.+.+.....+..... ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..++.++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 333344444443333 34667888999999999999999999999999994 5566555555554 44999999999
Q ss_pred HHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 399 ~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+++.++.+|+++..+..+|.++ ..+++++|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987554 566778999999999999999999999874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-14 Score=148.55 Aligned_cols=399 Identities=15% Similarity=0.122 Sum_probs=240.8
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCH
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~ 425 (942)
+..+.|.++.+..++|+..++ ..++.+..++...|.+++++|+|++|..+|+.+++.+.++.+.......+-..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--- 156 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--- 156 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---
Confidence 456667777777777777766 23455555667777777777777777777777766655544433222221100
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhh
Q 002286 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (942)
.+... +.++..|.. ...+.+.+++.+.++...|+|.+|++.+++++..+... +..+..
T Consensus 157 -a~l~~--~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-l~~~d~----------------- 214 (652)
T KOG2376|consen 157 -AALQV--QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-LEDEDT----------------- 214 (652)
T ss_pred -HhhhH--HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-hccccc-----------------
Confidence 00000 011111111 12245788888999999999999999999997654211 000000
Q ss_pred hhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHcCChh-HHHH
Q 002286 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----YLRLAAIAKARNNLQ-LSIE 580 (942)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~l~~~~~~~~~~~-~A~~ 580 (942)
..-+.......+...++.++..+|+..+|..+|..++..+|.+... -+++..+-....-++ .++.
T Consensus 215 ----------~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 215 ----------NEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 0000222345678889999999999999999999999998876432 223322221111122 1222
Q ss_pred HHHHHHhhcCC----------ChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcCh
Q 002286 581 LVNEALKVNGK----------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAP 650 (942)
Q Consensus 581 ~~~~~l~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~ 650 (942)
.++......++ -..++.+.+.+.+..+..+.+.+.....-...|.....++ +-.. +...
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-------- 353 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-------- 353 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH--------
Confidence 23222222211 1224555666666666666666666554444443222221 1111 1111
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHHh
Q 002286 651 KLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQ 727 (942)
Q Consensus 651 ~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~la~~~~~~ 727 (942)
...+.+|.+++......+|.+ ..+...++.+.+.+|++..|+.++....+....+ .....|.+--.+-..+...
T Consensus 354 ---~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 354 ---EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKI 430 (652)
T ss_pred ---HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhc
Confidence 146889999999999999997 7788889999999999999999999443221100 0003555555666677777
Q ss_pred cCHHHHHHHHHHHHhhhCCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHH
Q 002286 728 GNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (942)
Q Consensus 728 g~~~~A~~~~~~al~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 796 (942)
++.+.|...+..++.-+..... ...+-.++..-.+.|+-++|...+++.++.+|++..+.-.+..+|..
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 8777777777777765533222 33444556666778999999999999999999998877766555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=143.55 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=179.3
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
..+++.+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+ .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45688899999999999999999999999999999999999999999999 899999999999999999999988888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
.++..|.+++|...|++++..+ ..+..+.++.++|.|..+.|+++.|..+|++++. .+|.+..+...++...+..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888888754 4456678888888888888888888888888887 66777788888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
+|..|..+++......+-..+.+.....+-...|+.+.+-.+=.++....|.....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888888777778888888888888888888888877777888876654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-14 Score=149.40 Aligned_cols=460 Identities=14% Similarity=0.074 Sum_probs=301.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
++++|++|....++++.+.|+++.+......++.+.++|++|+...+.-....-.+. ..+..|.|.++.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHH
Confidence 467888999999999999999999999999999999999999965554332222222 2379999999999999999999
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
+ ..++.+ ..+....|.+++++|+|++|..+|+..++.+.++.+.......+..... ..+ . ..+.....|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-----l~~-~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-----LQV-Q-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-----hhH-H-HHHhccCCC
Confidence 8 345555 5567889999999999999999999999888777766554444322211 011 1 333444445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCC-----chhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 266 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAV-----T--NHGP-----TKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 266 ~-~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
. +...+++.+.++...|+|.+|+++++.++.. . +... ....+...++.++..+|+..+|...|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 5578999999999999999999999999421 1 1111 113456778999999999999999999999
Q ss_pred HhcCCCC-CchhhhhcHHHHHHHcCChH-HHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002286 333 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYPD----------NCETLKALGHIYVQLGQIEKAQELLR 400 (942)
Q Consensus 333 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (942)
+..+.+. ....+-.++..+-....-++ .++..++......++ -..++.+.+.+.+..+.-+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8533222 22222333322222111111 122222222222111 12355566666666676666666655
Q ss_pred HHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcch
Q 002286 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (942)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 479 (942)
..-...|............. ....+..+...+....+..|. ....+...++.+....|++..|+..+...+..
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~-- 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLES-- 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--
Confidence 54444454433333333333 333566777666665543332 13568888899999999999999999855521
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC----
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY---- 555 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 555 (942)
|.+.+. .....+.+...+-.+++..++.+.|...+.+++.-.
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111000 111233444455556677777777777777776522
Q ss_pred ---CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHH
Q 002286 556 ---QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (942)
Q Consensus 556 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (942)
+.....+...+..-.+.|+-++|...+++.++.+|++.++...+...|... +.+.|..+-+.
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 222334555566667789999999999999999999999998888876554 45566555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=169.35 Aligned_cols=261 Identities=16% Similarity=0.202 Sum_probs=181.1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
+..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++ -..|+..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4456666666666666666666666666666666666666666555 5556666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--------CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHH
Q 002286 281 TGQHFLVEQLTETALAVTNHG--------PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 352 (942)
.|.-..|...+..-+...+.. +.... ..........+..-.++|..+....+ ....+.++..||.+|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHH
Confidence 666666666666655322100 00000 00000111112233445555554322 125677899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHH
Q 002286 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
...|+|++|+.+|+.+|...|++...|..||-.+....+.++|+..|.+++++.|..+.+++++|..+ ..|.|.+|..+
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 432 FKTARTLLKKAGEE-----VPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 432 ~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
|-.++.+.+..... .+..+|..|-.++...++.+.+..
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999998773221 123567666667777777664443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=162.11 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhhcCC---C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 108 EHFILATQYYNKASRIDM---H-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p---~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
+..+.++..+++++...| . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455688888888886444 2 356799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
.|+++++++|++ ..++..+|.++...|++++|+..|+++++.+|+++.....+ .+....++ +.+|+..+.+....
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422221 22334455 88888888776654
Q ss_pred C
Q 002286 264 Y 264 (942)
Q Consensus 264 ~ 264 (942)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=142.83 Aligned_cols=210 Identities=23% Similarity=0.255 Sum_probs=181.3
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 420 (942)
..+...||.-|+..|++..|...++++++.+|++..++..++.+|...|..+.|.+.|++++.++|++.+++++.|..+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 3457788999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
.+|.+++|...|++++.. .....+...+.++|.|..+.|+++.|..+|++++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~---P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~------------------------ 167 (250)
T COG3063 115 AQGRPEEAMQQFERALAD---PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE------------------------ 167 (250)
T ss_pred hCCChHHHHHHHHHHHhC---CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH------------------------
Confidence 888999999998888763 22233567888899999999999999999999988
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHH
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
.+|..+.....++..+...|++..|..+++......+-..+.+.....+....|+-+.+-.
T Consensus 168 -------------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 168 -------------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred -------------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHH
Confidence 6677888888889999999999999998888888888778888888888888899888888
Q ss_pred HHHHHHhhcCCChhHHH
Q 002286 581 LVNEALKVNGKYPNALS 597 (942)
Q Consensus 581 ~~~~~l~~~p~~~~~~~ 597 (942)
+=.+.....|.+++.-.
T Consensus 229 Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 229 YQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhCCCcHHHHh
Confidence 88888888888776543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=162.76 Aligned_cols=256 Identities=15% Similarity=0.214 Sum_probs=155.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
+..|..+++.|++.+|.-+|+.+++.+|.+..+|..+|.+....++-..|+..++++++++|++ ..+...+|.+|...|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-leaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-LEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-HHHHHHHHHHHhhhh
Confidence 4567777777777777777777777777777777777777777777777777777777777777 566677777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc------cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQAN------EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~------~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
.-..|..++.+.+...|...... .+..-...+ +...+..-.+.|-.+....|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~--~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-------------------- 425 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLV--SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-------------------- 425 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhcc--ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 77777777777766665422110 000000000 00012222222333333333
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
. ..++++...||.+|+..|+|++|+.+|+.++. ..|.....|..||-.+....+..+|+..|
T Consensus 426 --------------~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 426 --------------T-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred --------------C-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 1 24456666666666666777777777776666 55666666777777776666777777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHH-hcCCHhHH
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR----------DAQAFIDLGELL-ISSDTGAA 428 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~-~~~~~~~A 428 (942)
.+++++.|....+++++|.+++.+|.|++|..+|-.++.+.+. +..+|..|-.++ ..++.+-+
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 7777777777777777777777777777777777766665432 123555555555 55555433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-16 Score=159.29 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=161.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 138 LLAKGEVEQASSAFKIVLEADR---D-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p---~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
....+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.++...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCH
Confidence 3344677888888888886433 2 36678888888888888888888888888888888 67788888888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~ 293 (942)
++|+..|+++++++|++..++..+|.++...|+ +++|+..++++++.+|+++.....
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~~-------------------- 171 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRALW-------------------- 171 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH--------------------
Confidence 888888888888888888888888888888888 888888888888888877621111
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHH-----
Q 002286 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV----- 368 (942)
Q Consensus 294 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----- 368 (942)
.......+++++|+..|.+..... ++.. + ..+.+....|+...+ ..+..+
T Consensus 172 ------------------~~l~~~~~~~~~A~~~l~~~~~~~--~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~ 226 (296)
T PRK11189 172 ------------------LYLAESKLDPKQAKENLKQRYEKL--DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGAT 226 (296)
T ss_pred ------------------HHHHHccCCHHHHHHHHHHHHhhC--Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCC
Confidence 111233456666666665544321 1111 1 134444445554332 122222
Q ss_pred --HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Q 002286 369 --LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL 420 (942)
Q Consensus 369 --l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~ 420 (942)
.+..|...++++.+|.++...|++++|+.+|++++..+| +.+...+.+..+.
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 244556677888888888888888888888888888875 5555555554444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=152.90 Aligned_cols=274 Identities=19% Similarity=0.203 Sum_probs=229.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
++..|..|+..++.++...|.+...|..++..++..|+|++|....++.++.+|..+......+.++...++..+|...+
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHH------------HhC------CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 186 KRAL------------QVH------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 186 ~~~l------------~~~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
+..- .+- |.+ ..+.+.-+.|+..+|++++|...--..+++++.+.++++..|.++...++
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 5211 111 222 34456778899999999999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (942)
.+.|+..|++++.++|+...+-... ..+.....+..-|.-.+..|++..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~-------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS-------------------------MMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh-------------------------hhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999876443211 1133446777888999999999999999
Q ss_pred HHHHHHhcCCC-CCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 328 YMASVKEINKP-HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 328 ~~~a~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
|..++...|.+ ..++..|.+++.+....|+..+|+..++.+++++|....++...|.|+..++++++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999843322 23345688899999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 002286 407 PR 408 (942)
Q Consensus 407 p~ 408 (942)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 55
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-14 Score=134.76 Aligned_cols=301 Identities=20% Similarity=0.250 Sum_probs=242.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----hhhHhhHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGL 205 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~la~ 205 (942)
.-+..|.-++-..+.++|+..|-.+++.+|...++.+.+|.++.+.|..+.|+.+.+..+. .|+.+ ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3466788888999999999999999999999999999999999999999999999887765 55542 345678999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
-|...|-++.|...|....+...--..++..|..+|....+ +++|+...++..++.+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~--------------- 177 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV--------------- 177 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh---------------
Confidence 99999999999999999887655567788889999988888 999999999888887765422
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
.-+..|..++..+....+.+.|...+.++++ .+|..+.+-..+|.+....|+|+.|++.+
T Consensus 178 -----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 178 -----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred -----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHH
Confidence 1236677788888888999999999999998 77888999999999999999999999999
Q ss_pred HHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC
Q 002286 366 EKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 443 (942)
Q Consensus 366 ~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 443 (942)
+.+++.+|+. +++...|..+|..+|+.++....+.++.+..+.. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-- 314 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT-- 314 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc--
Confidence 9999999986 5688899999999999999999999999887754 4445566655 556667777766665554332
Q ss_pred CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhh
Q 002286 444 EEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALG 476 (942)
Q Consensus 444 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~ 476 (942)
....+.+...... .|...+.+..+..++.
T Consensus 315 ----~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ----MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ----HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3444444444332 3446666777777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-15 Score=155.25 Aligned_cols=256 Identities=23% Similarity=0.278 Sum_probs=199.1
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh-
Q 002286 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI- 371 (942)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 371 (942)
....|....+...++..|...|+|+.|+..++.+++... ..+........+|.+|...+++.+|+..|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 344566667777788888888888888888888876421 12333344455889999999999999999999875
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHH-hcCCHhHHHHHHHHH
Q 002286 372 -------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (942)
Q Consensus 372 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (942)
+|....++.+||.+|...|++++|..++++++++. |.-...+..++.++ ..+++++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34446688899999999999999999999988763 44456677888888 999999999999999
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhc
Q 002286 436 RTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (942)
Q Consensus 436 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (942)
+++..+.....+ +.++.++|.++..+|++++|..+|++++.......
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------------------ 401 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------------------ 401 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc------------------------------
Confidence 999875543333 47899999999999999999999999998531100
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
....+.....+.++|..+.+.+++.+|..+|.++..+ +|+....+.+|+.+|..+|+++.|+++...+
T Consensus 402 -----~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 402 -----GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred -----cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0034456678889999999999999999999887763 3555778889999999999999999988887
Q ss_pred Hhh
Q 002286 586 LKV 588 (942)
Q Consensus 586 l~~ 588 (942)
+..
T Consensus 477 ~~~ 479 (508)
T KOG1840|consen 477 LNA 479 (508)
T ss_pred HHH
Confidence 743
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-14 Score=153.03 Aligned_cols=254 Identities=25% Similarity=0.223 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--- 335 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 335 (942)
.|.-..+...++..|...|++++|+.+++.++.. ....+........+|.+|...+++.+|+.+|++++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666677777888888888888888888888864 12234555566679999999999999999999998743
Q ss_pred --CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 336 --NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 336 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
+.+|..+.++.+||.+|...|++.+|..++++++++. |.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3567777889999999999999999999999998763 334557888999999999999999999999876
Q ss_pred C--------cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 406 D--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 406 ~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (942)
. |.-+..+.++|.+| ..|++.+|.+.+++++.+......... ...++++|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3 34467889999999 999999999999999999877654433 36788999999999999999999999
Q ss_pred HhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002286 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (942)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (942)
+...... .....|+....+.+|+.+|..+|+++.|+++...++.
T Consensus 435 ~~~i~~~------------------------------------~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKL------------------------------------CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHH------------------------------------hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9874310 0115677788999999999999999999999999885
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-14 Score=136.75 Aligned_cols=296 Identities=20% Similarity=0.187 Sum_probs=216.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
.|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|. .+.|+..-+..+. .|+-+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~L~~-spdlT~------------- 103 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQTLLE-SPDLTF------------- 103 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHHHhc-CCCCch-------------
Confidence 45556666677777777777777777777777777777777777 7777766655443 232221
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHH
Q 002286 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (942)
.....+...+|.-|...|-++.|...|....+ .+.....+.-.|..+|-...++++|+
T Consensus 104 -------------------~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d---e~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 104 -------------------EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD---EGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred -------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc---chhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 12235677788888888888888888888774 23444556777888888888888888
Q ss_pred HHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHH
Q 002286 363 TNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (942)
Q Consensus 363 ~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 436 (942)
+.-+++.+..+.. +..+..++..+....+.+.|...+.++++.+|+.+.+-+.+|.+. ..|+++.|++.++.++
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 8888888877654 446777888888888888999999999999999988888899988 8899999999888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCC
Q 002286 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (942)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (942)
+..+.. -+++...+..+|...|+.++.+..+.++....
T Consensus 242 eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-------------------------------------- 279 (389)
T COG2956 242 EQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-------------------------------------- 279 (389)
T ss_pred HhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--------------------------------------
Confidence 775553 45788888999999999999999999988732
Q ss_pred CCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCChhHHHHHHHHHH
Q 002286 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA---RNNLQLSIELVNEAL 586 (942)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~l 586 (942)
+ .+.+...++..-....-.+.|..++.+-+..+|+- ....++...... .|...+.+..+..++
T Consensus 280 -----~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 -----T-GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -----C-CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 1 44555666777777777888888888889999986 344444444332 233455555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-14 Score=150.80 Aligned_cols=352 Identities=15% Similarity=0.142 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
.+++.....++...|++++|+.++.+... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 46677778899999999999999988665 34557788
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
.-..|.++..+|++++|...|..++..+|++...+..+..+..... +.+.-..+|++.....|....+...--.+
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 8899999999999999999999999999999998888888874332 56777888998888888765544332222
Q ss_pred hccccch-HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc-----------
Q 002286 603 ELKNDDW-VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ----------- 670 (942)
Q Consensus 603 ~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------- 670 (942)
..-..+ ..+..++...+..+-+ .....+-.+ |....+ ..-...-+.-|...++.
T Consensus 121 -~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~L-y~d~~K---------~~~i~~l~~~~~~~l~~~~~~~~~~~~~ 186 (517)
T PF12569_consen 121 -LEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPL-YKDPEK---------AAIIESLVEEYVNSLESNGSFSNGDDEE 186 (517)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHH-HcChhH---------HHHHHHHHHHHHHhhcccCCCCCccccc
Confidence 222223 3444455555555422 122222222 332200 01122222222222211
Q ss_pred --CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 671 --HTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 671 --~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
.|.. .|+++.+|..|...|++++|+.+++++++..| ..++.|+..|.++-..|++.+|.+.++.+-.. +.
T Consensus 187 ~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~ 259 (517)
T PF12569_consen 187 KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-----TLVELYMTKARILKHAGDLKEAAEAMDEAREL--DL 259 (517)
T ss_pred cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--Ch
Confidence 1222 46789999999999999999999999999998 88999999999999999999999999999998 77
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 002286 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFS 827 (942)
Q Consensus 748 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~ 827 (942)
.|-.+....+..+.+.|+.++|.+.+....... .++....+-..|+++..+.. .+-....+...|...+....++|.
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~~~~~~L~~mQc~Wf~~e~a--~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED-VDPLSNLNDMQCMWFETECA--EAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC-CCcccCHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999987754433 35444444444555544411 111113468888999999999999
Q ss_pred HHhhCCCCCCCCCcHHHHHHHHHH--H--HHHHHHHHHHHHHHH
Q 002286 828 HLSAASNLHLHGFDEKKINTHVEY--C--KHLLDAAKIHREAAE 867 (942)
Q Consensus 828 ~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 867 (942)
.+..+... +|.|+.++.+.|+-+ . .+-+...+..++.+.
T Consensus 337 ~~~~DQfD-FH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 337 DFEEDQFD-FHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHhccccc-HHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99887655 778888776655422 1 344444444444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=152.90 Aligned_cols=311 Identities=16% Similarity=0.132 Sum_probs=240.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
-....|..++...+|.+|+..|..++...|++ ...|...+.++...|++++|.-..+..++++|..+......+.++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 35667778888888888888888888888888 66678888888888888888888888888888887777777777777
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (942)
.++ ..+|...++. ..++ ....
T Consensus 130 ~~~---~i~A~~~~~~--------~~~~------------------------------------------------~~an 150 (486)
T KOG0550|consen 130 LSD---LIEAEEKLKS--------KQAY------------------------------------------------KAAN 150 (486)
T ss_pred hHH---HHHHHHHhhh--------hhhh------------------------------------------------HHhh
Confidence 766 5555555440 0000 1122
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 324 A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 403 (942)
|+..+++.+......|....+....+.++...|++++|...--.++++++.+.++++..|.++...++.+.|+..|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 33333333322222344555667778999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhh
Q 002286 404 KIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483 (942)
Q Consensus 404 ~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 483 (942)
.++|+...+-..... ++ ..+.+..-|.-.++.|++..|.+.|..++...|.
T Consensus 231 ~ldpdh~~sk~~~~~---------------------~k-----~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--- 281 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMM---------------------PK-----KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--- 281 (486)
T ss_pred ccChhhhhHHhHhhh---------------------HH-----HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc---
Confidence 999987554321111 00 1345566688999999999999999999995441
Q ss_pred ccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002286 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563 (942)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 563 (942)
....+...+.+.+.+...+|+..+|+...+.++.++|.+..++.
T Consensus 282 ------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 282 ------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred ------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 12236678899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 564 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
+.|.++...++|++|.+.|+++.+...+ .+....+.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 9999999999999999999999998765 55544443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=151.78 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...+..+|..|...|+.. +|+..+++++..+|.+..++..+|.++...|++++|+..|++++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 455666666666666555 777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
.++..+|.++...|++++|+..|++++... |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 777777777777777777777777777643 222 44566677777777777777777777777777777777777777
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~ 294 (942)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777 777777777777666666666656666666666666655555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=151.19 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=117.1
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
...++.+|.++...|++++|+..+++++..+|++..++..+|.++...|+ +++|+..+++++...|.++.++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666 666666666666666655555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
++...|++++|...+.+++... ..+.....+..+|.++...|++++|...+.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555544321 1123334555566666666666666666666665 23444455556666666666
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 405 (942)
++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666655555566666666666666666666655554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-14 Score=151.85 Aligned_cols=354 Identities=14% Similarity=0.112 Sum_probs=235.5
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccccc
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 489 (942)
++......++ ..|++++|+..+........+ ...++...|.++..+|++++|...|...+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D-----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~------------- 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILD-----KLAVLEKRAELLLKLGRKEEAEKIYRELID------------- 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 3445555566 667777777766654443222 246666777788888888888888888877
Q ss_pred chhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc-----CCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002286 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-----HDTVAASVLYRLILFKYQDYVDAYLR 564 (942)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (942)
.+|++...+..+..+.... .+.+.-..+|++.....|..... .+
T Consensus 67 ------------------------------rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~r 115 (517)
T PF12569_consen 67 ------------------------------RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP-RR 115 (517)
T ss_pred ------------------------------HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch-hH
Confidence 4566666666666665222 24566678888888888765222 22
Q ss_pred HHHHHHHcCChhH-HHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc----------------CCCCc
Q 002286 565 LAAIAKARNNLQL-SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA----------------TDGKD 627 (942)
Q Consensus 565 l~~~~~~~~~~~~-A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~ 627 (942)
+...+..-..+.. +..++...+.. .-|.++..+-.+|....+..-....+...... .|..-
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 2222222122322 33444444433 34556666666666444433333333333221 11111
Q ss_pred hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC
Q 002286 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707 (942)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 707 (942)
.++++.++.. |-.. |++++|+++.++++...|..+..+...|.+|.+.|++.+|...++.++..++
T Consensus 194 lw~~~~lAqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~- 259 (517)
T PF12569_consen 194 LWTLYFLAQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL- 259 (517)
T ss_pred HHHHHHHHHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-
Confidence 2455566666 6666 9999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC-CC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 708 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
.+--+-...+..+++.|+.++|.+....--+...++ .+ .+.....|.+|.+.|++..|++.|..+.+.+
T Consensus 260 ----~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 260 ----ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ----hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455566667889999999999999965543332111 11 2334567999999999999999999999987
Q ss_pred CCC--hhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHH---HHHHHHHHHHHHHHhhCCC
Q 002286 781 PSN--YTLRFDAGVAMQKFSASTLQKTRRTADEVRST---VAELENAVRVFSHLSAASN 834 (942)
Q Consensus 781 p~~--~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a---~~~l~~a~~~~~~l~~~~~ 834 (942)
-+. ..+-|| ..|+.++..++.-...+..+.+... +.-...|++++-.|.+.+.
T Consensus 336 ~~~~~DQfDFH-~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~ 393 (517)
T PF12569_consen 336 DDFEEDQFDFH-SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPE 393 (517)
T ss_pred HHHhcccccHH-HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcc
Confidence 643 334444 4568888877766665555555544 6667889999999988763
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-15 Score=149.62 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
++-.+-.++...+++++|+.+++.++...|. ...++...+.++..+|. ++.+|+..+++++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~---------~ytaW~~R~~iL~~L~~----------~l~eeL~~~~~~i 99 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG---------NYTVWHFRRLCLEALDA----------DLEEELDFAEDVA 99 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch---------hHHHHHHHHHHHHHcch----------hHHHHHHHHHHHH
Confidence 4444444466677778888888877776663 23455566666655542 2347778888888
Q ss_pred hcCCCCcchHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
+.+|++..+|..++.++...|+. ++++.++++++..+|+|..+|..++.++...|+|++|+..+.++++.+|.+ ..+
T Consensus 100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sA 178 (320)
T PLN02789 100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSA 178 (320)
T ss_pred HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhH
Confidence 88888877888777777777763 667777778888888888888888888877788888888888888888777 666
Q ss_pred HhhHHHHHHHc---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH-HhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 200 RLGIGLCRYKL---GQL----GKARQAFQRALQLDPENVEALVALAVMDLQANEA-AGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 200 ~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
|..++.++..+ |.+ +.++.+..+++..+|+|..+|..++.++...+.. ....+++..+.+++...|.++.++
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 77777777665 222 3566667777778888888877777777663221 124557777777777777777777
Q ss_pred HHHHHHHHh
Q 002286 272 NYLANHFFF 280 (942)
Q Consensus 272 ~~la~~~~~ 280 (942)
..|+.+|..
T Consensus 259 ~~l~d~~~~ 267 (320)
T PLN02789 259 SDLLDLLCE 267 (320)
T ss_pred HHHHHHHHh
Confidence 777777764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-14 Score=145.69 Aligned_cols=227 Identities=14% Similarity=-0.002 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYK 186 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~ 186 (942)
++|.+|..+|..++.. .+.+++|+..+.+++..+|.+..+|..++.++...| ++++++..+.
T Consensus 34 ~~~~~a~~~~ra~l~~-----------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYAS-----------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHHc-----------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 4566777777666543 467889999999999999999999999999999998 6899999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
+++..+|++ ..+|...+.++..+|.. ++++..+.++++.+|+|..+|...+.++...|+ +++++..+.++++.+
T Consensus 97 ~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d 172 (320)
T PLN02789 97 DVAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHC
Confidence 999999999 67789999999888874 778999999999999999999999999999988 999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 002286 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (942)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 344 (942)
|.+..+|+..+.++...+... . .....+.++.+..+++. ..|.+..+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~---------------------------~---~~~~~e~el~y~~~aI~---~~P~N~Sa 219 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLG---------------------------G---LEAMRDSELKYTIDAIL---ANPRNESP 219 (320)
T ss_pred CCchhHHHHHHHHHHhccccc---------------------------c---ccccHHHHHHHHHHHHH---hCCCCcCH
Confidence 999988888876654432100 0 00112455666666665 45666677
Q ss_pred hhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 345 YYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 345 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
|..++.++.. .++..+|+..+..++...|.++.++..++.+|..
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7777777766 3455667777777777777777777777777765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-13 Score=146.78 Aligned_cols=312 Identities=17% Similarity=0.113 Sum_probs=203.7
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
||+.+.++..+|..+...|+++.|...+.++.+..|.+ .......+.++...|++++|+..+++++..+|++ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 78899999999999999999999988888888777654 4567778889999999999999999999999988 4433
Q ss_pred hhHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 201 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 201 ~~la~~~~~~g~~~----~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
.. +..+...|++. .+...+......+|....++..+|.++...|+ +++|+..+++++..+|+++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 33 55555555444 44444433335567777778888889999998 999999999999999999888888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhh---cHHHHH
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY---GLGQVQ 352 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~la~~~ 352 (942)
+++..|++++|+.++.+++...+..+. ....+..+|.++...|++++|+..|++++...+. ........ .+...+
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHH
Confidence 999999999999998888876543222 2345667888888888888888888887642111 11111111 112222
Q ss_pred HHcCChHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------cHHHHHHHHH
Q 002286 353 LKLGDFRSALTN--F-EKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGE 418 (942)
Q Consensus 353 ~~~g~~~~A~~~--~-~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~ 418 (942)
...|....+... + .......|. ........+.++...|+.+.|...+..+...... ........+.
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 233322222222 1 111111111 1122234566666667777777776665442211 1233344444
Q ss_pred HH-hcCCHhHHHHHHHHHHHHHHH
Q 002286 419 LL-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 419 ~~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
++ ..|+++.|+..+..++.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55 566666666666666555443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-13 Score=143.92 Aligned_cols=308 Identities=15% Similarity=0.069 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (942)
Q Consensus 82 ~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 158 (942)
-...+..++.+|...|... .|...+.++....|.+ ....+..|..+...|++++|...+++++..+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3557788888888888766 5677777776666644 4567788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
|++..++.. +..++..|++..+.....+++. .+|.. ......+|.++...|++++|...++++++.+|++..++
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 999987775 6666665555544444444443 34444 45566788999999999999999999999999999999
Q ss_pred HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH-HH
Q 002286 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YY 309 (942)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 309 (942)
..+|.++...|+ +++|+..+.+++...|.++ ..+..++.++...|++++|...++.++...+..+..... -.
T Consensus 152 ~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 152 HAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 999999999999 9999999999999887543 345679999999999999999999987543221211111 11
Q ss_pred -HHHHHHHhcCCHHHHHHH--HH-HHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC---------cH
Q 002286 310 -NLARSYHSKGDYEKAGLY--YM-ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (942)
Q Consensus 310 -~la~~~~~~g~~~~A~~~--~~-~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (942)
.+...+...|....+..+ .. ...... ..+.........+.++...|+.+.|...++.+...... ..
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 223333444433333332 11 111110 11222223345788888999999999999887654322 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
......+.++...|++++|+..+..++...
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 567788999999999999999999998653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-13 Score=125.24 Aligned_cols=423 Identities=15% Similarity=0.109 Sum_probs=258.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (942)
+....+|..|++++..-....|.+...+..+|.||+...+|..|..+|++.-...|.. ...++..+..+++.+.+..|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHHH
Confidence 4777889999999988888888888889999999999999999999999998888888 677888888999999999988
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 218 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
.....+...+.-.......-+.+....++ +..+....+ .-| +........|.+.++.|+++.|.+-|+.++
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~D---l~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGD---LPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccccc---CcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 87776543211112223333444444455 444433333 334 455667777777777777777777777777
Q ss_pred hcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 002286 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (942)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (942)
+...-.| ..-++++.++++.|++..|+++....+... .+.|........-|.--...|+. +..-.. .
T Consensus 172 qvsGyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~S------a 239 (459)
T KOG4340|consen 172 QVSGYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQS------A 239 (459)
T ss_pred hhcCCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHH------H
Confidence 6654433 566777777777777777777777766532 12232211100000000001110 011111 1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHH
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 452 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 452 (942)
-.++++..+.++.+.|+++.|.+.+..+--.. .-+|..+.+++..-..+++.....-+.-.+.+.| .+++++.
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-----fP~ETFA 314 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-----FPPETFA 314 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-----CChHHHH
Confidence 24567788889999999999988765442111 1246667777766577778777777776666533 4789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHH
Q 002286 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 532 (942)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 532 (942)
++-.++++..-++.|...+.+--... ..- -....+++-
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------yk~-L~~Yly~LL 352 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------YKF-LTPYLYDLL 352 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------HHH-hhHHHHHHH
Confidence 99999999988888887775532210 000 111222222
Q ss_pred HH-HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccc
Q 002286 533 RL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 608 (942)
Q Consensus 533 ~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 608 (942)
.. -...-..++|.+-+..+-....+-....-.-.......++ ...|++.|+..+++. ..+....+++|....+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLED 429 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccc
Confidence 22 2233455555555444332111110000000111111111 223455555555543 4467788999999999
Q ss_pred hHHHHHHHHHhhccCCCCchhH
Q 002286 609 WVKAKETFRAASDATDGKDSYA 630 (942)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~~~~ 630 (942)
+..+.+.|....+...+++.+-
T Consensus 430 y~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 430 YPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred cHHHHHHHHHHHhhhcccceee
Confidence 9999999999888777666553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-13 Score=123.41 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
++..|..|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|......+..|..+++.+.+.+|+.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
..+... |.-...+.-.-+.+.+..+++..+....++.- ..++.......|.+..+.|+ ++.|++-|+.+++...
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhcC
Confidence 876543 33333444556777788899988887766531 12567788899999999998 9999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCc-------------------------hhHHHHHHHHHHHhcC
Q 002286 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPT-------------------------KSHSYYNLARSYHSKG 319 (942)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-------------------------~~~~~~~la~~~~~~g 319 (942)
.++.+-+.++.+.++.|++..|+++...++...- .+|. ..+++...+.++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 9999999999999999999999999988874321 1111 1345667788888889
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 320 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
+++.|.+.+..+--.. ...-.+..+.+++..- ..+++.+...-+.-++.++|--.+.+.++-.+|++..-++-|..++
T Consensus 256 n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHhhcCCCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 9888877765443211 1122233455555433 3466777777788888888877888888888888888888777665
Q ss_pred HHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 002286 400 RKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTART 437 (942)
Q Consensus 400 ~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (942)
-. +|+. +..+..+-.+. .....++|.+-+.....
T Consensus 334 AE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 334 AE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 43 3332 12222222222 55566666665555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=137.52 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=89.0
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-- 197 (942)
.++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456678899999999999999999999999999998875 57789999999999999999999999999998743
Q ss_pred hhHhhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 198 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.+++.+|.++... |++++|+..|++++..+|++..++
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 2577888888765 556666666666666666654443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=136.16 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=153.9
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh--
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV---DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-- 594 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-- 594 (942)
..+..+..++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999988764 57788999999999999999999999999988876
Q ss_pred -HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 002286 595 -ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (942)
Q Consensus 595 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (942)
+++.+|.++... ++.. +... |++++|++.|++++..+|+
T Consensus 108 ~a~~~~g~~~~~~---------------------------~~~~-~~~~------------~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 108 YAYYLRGLSNYNQ---------------------------IDRV-DRDQ------------TAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHHh---------------------------cccc-cCCH------------HHHHHHHHHHHHHHHHCCC
Confidence 577777776443 0111 2223 7888899999999998888
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 752 (942)
+..+...+..+.. +.. ........+|.+++..|++.+|+..|+.++..+|+.+. +.+
T Consensus 148 ~~~~~~a~~~~~~--------------~~~--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 148 SEYAPDAKKRMDY--------------LRN--------RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred ChhHHHHHHHHHH--------------HHH--------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 8766543322211 000 11233457888889999999999999999998876544 788
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 753 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
++.+|.++...|++++|..+++.+...+|+
T Consensus 206 ~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 206 LARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999988888777763
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-10 Score=124.84 Aligned_cols=249 Identities=13% Similarity=0.105 Sum_probs=168.0
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc----
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---- 196 (942)
...+|.+..+|..++..+...|++++|+..++..+...|+.+.+++.+|.++++.+++.++..+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3456889999999999999999999999999999999999999999999999999998888766 6666555441
Q ss_pred --------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH
Q 002286 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (942)
Q Consensus 197 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 262 (942)
..+++.+|.||-++|+.++|...|+++++.+|+|+.++..+|..+... + .++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 145566666776677777777777777777777777766666666666 5 6666666666655
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 002286 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (942)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 342 (942)
. ++..++|..+..+..+.+... |.+.+.+..+ .++..... .....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i----------------~~ki~~~~-~~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRI----------------ERKVLGHR-EFTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHH----------------HHHHHhhh-ccchhH
Confidence 4 444445555555555555432 2222222221 11111110 011122
Q ss_pred hhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Q 002286 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------------GQIEKAQELLRKA 402 (942)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~~ 402 (942)
..+.-+-..|...+++++++.++..+++.+|.|..+...++.+|... ..+..|+..|++.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 23344446777888888899999999888888888888888888743 2345566666666
Q ss_pred HHhCcCc
Q 002286 403 AKIDPRD 409 (942)
Q Consensus 403 l~~~p~~ 409 (942)
+..+|.+
T Consensus 304 i~f~~G~ 310 (906)
T PRK14720 304 IVFDTGN 310 (906)
T ss_pred eeecCCC
Confidence 6555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-14 Score=125.83 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.5
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
..+|+++++.+|++ ++.+|..+...|++++|+..|+.++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47889999999874 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
++ +.+++.+|.|+..+|++++|+..|++++...|+++..+..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 788999999999999999999999999999999999998888765543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-11 Score=117.18 Aligned_cols=296 Identities=18% Similarity=0.110 Sum_probs=182.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
-|..-+..|+|.+|.....+.-+..+....+++.-|...-++|+++.|-.++.++-+..+++.-.+.+..+......|++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 34445556666666666666666665556666666666666677777666666666665554445566666666666666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH---HHHHH--HHHhcCCHHHHH
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL---NYLAN--HFFFTGQHFLVE 288 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~la~--~~~~~g~~~~a~ 288 (942)
+.|......+++..|.++.++.....+|...|+ +......+.+.-+..--+..-. -..+. ++-..++-..+.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 777766666666666666666666666666666 5555555555444322211111 00000 111111222222
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHH
Q 002286 289 QLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (942)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (942)
.+..--...+..-..++.....++.-+...|+.++|.+....+++..-+ +. ...-.-...-+++..=++..++.
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~-----L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR-----LCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh-----HHHHHhhcCCCCchHHHHHHHHH
Confidence 2111111111111233466667777778888888888888888863211 11 11112234567778888888888
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002286 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (942)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (942)
++..|+++..+..+|.++.+.+.+.+|..+|+.+++..| +...+..+|.++ ..|+...|...++.++...
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888776 455677788888 8888888888888877544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-13 Score=119.73 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=116.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
..+|+++++.+|++ +..+|.++...|++++|+..|++++...| .++.+|.++|.++...|++++|+..|+++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQP-----WSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999986 45689999999999999999999999998 88999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHH
Q 002286 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 795 (942)
+.. ++.++.+++.+|.++...|++++|+..|.+++...|+++..+.+.+.+..
T Consensus 85 l~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 998 67789999999999999999999999999999999999999999998743
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-11 Score=116.36 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=109.3
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHH
Q 002286 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (942)
Q Consensus 580 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (942)
.+++..-..-..+|.+...++.-+...|+.++|.+....+++..-++....++. .... ++...
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~-----~l~~------------~d~~~ 312 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP-----RLRP------------GDPEP 312 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh-----hcCC------------CCchH
Confidence 344444444455677777788888888888888888888887665433222211 1111 66777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002286 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (942)
=++..++.++.+|+++..+..||.++.+.+.+.+|...|+.++...| +...+..+|+++.++|+..+|.+.+++
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 77788888899999999999999999999999999999998888774 577888899999999999999999999
Q ss_pred HHhhhCCC
Q 002286 740 CLRKFYYN 747 (942)
Q Consensus 740 al~~~~~~ 747 (942)
++..+-.+
T Consensus 387 ~L~~~~~~ 394 (400)
T COG3071 387 ALLLTRQP 394 (400)
T ss_pred HHHHhcCC
Confidence 98765433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-12 Score=120.30 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--hHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~~~g~--~~~A~~~ 184 (942)
++.++++..+.++++.+|+++..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++ ...|+ +++|...
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34455555556666666666666666666666666666666666666666666666666665543 44444 3556666
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
++++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|.+
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666655 4455556666666666666666666665555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=125.31 Aligned_cols=298 Identities=20% Similarity=0.199 Sum_probs=209.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhhhhcHHH
Q 002286 275 ANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 350 (942)
Q Consensus 275 a~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~la~ 350 (942)
|.-+++.|++.....+|+.+++....+ ...+.+|..+|.+|+..++|.+|+++-..-+. .+++......+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 455666667777777777766554222 23345677888888888888888887654332 22334444556677899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 404 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~ 404 (942)
++--.|.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887766432 135688999999987754 2344444444444
Q ss_pred hCcC------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 405 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 405 ~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+... ...++-++|..| ..|+|+.|+..-+.-+.+....++... ..++.++|.++.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 3221 234666777888 899999999999888888777665433 37889999999999999999999999887
Q ss_pred cchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
...... .....+...|.+|..|.-..++++|+.++.+-+.+..
T Consensus 264 LAielg-------------------------------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIELG-------------------------------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHhc-------------------------------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532111 2233667889999999999999999999988776432
Q ss_pred ------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc----CCC--hhHHHHhhhhhccccch
Q 002286 557 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GKY--PNALSMLGDLELKNDDW 609 (942)
Q Consensus 557 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~----p~~--~~~~~~l~~~~~~~g~~ 609 (942)
....+++.||..+...|..++|+.+....++.. ... ..+..++.......|..
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 236788999999999999999999888776653 222 23455555555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-11 Score=109.23 Aligned_cols=209 Identities=17% Similarity=0.060 Sum_probs=173.1
Q ss_pred CCHhHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 423 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.+.++-++.....+...+.. -.+....++-.+..+....|..+.|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 45556666666665554443 1122235566667778889999999999999877
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
..|.+..+....|..+...|++++|+++|+.+++.+|.+...+-+...+...+|+.-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 34778888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 582 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
+...++.++.++++|..++.+|...|++++|.-++++++-..|- .+.-+..++.+ ++..... .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~-~Yt~gg~---------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEV-LYTQGGA---------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHH-HHHHhhH---------HHHHHHH
Confidence 99999999999999999999999999999999999999988887 45556678888 5544332 6889999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVL 685 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~ 685 (942)
++|.++++++|.+..+++++-.+-
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999999988874443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-12 Score=122.29 Aligned_cols=310 Identities=17% Similarity=0.198 Sum_probs=214.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----CCCchhhHhhH
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGI 203 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~l 203 (942)
.-|.-+++.|++...+.+|+.+++....+. ..|..+|..|+..++|.+|+++...-+.+. .-..+..--.+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 457788999999999999999999887763 456788999999999999998866544331 11112334568
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhccHH----------hHHHHHHHHHHHHHhCCCC
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAA----------GIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~----------~~~~A~~~~~~~~~~~p~~ 267 (942)
|..+--+|.|++|+.+..+-+.+.. ....+++++|.+|...|+.- ...++...++.+.+....+
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887665422 24567899999998877510 0112222222222211111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhh
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFP 344 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~ 344 (942)
......+ .+......++-++|..|+..|+|++|+.+-+.-+. .+++....-.+
T Consensus 182 L~l~~~l------------------------gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA 237 (639)
T KOG1130|consen 182 LELSEKL------------------------GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRA 237 (639)
T ss_pred HHHHHHh------------------------hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 1111000 11122346778889999999999999988765543 33333344567
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PD--NCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQA 412 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~ 412 (942)
+.++|.+++-.|+++.|+++|...+.+. .. .+...+.+|..|.-..++++|+.++.+-+.+. -....+
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 8899999999999999999999876542 22 34577889999999999999999999877653 234678
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFES 466 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 466 (942)
+..+|..+ ..|..++|+.+.+..++.....++.. ......++...-...|..+.
T Consensus 318 cwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 88999999 99999999999999988877765544 23455556666555565443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-09 Score=133.93 Aligned_cols=268 Identities=16% Similarity=0.114 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
..-..|..+...|.+.+|...+..+.... .-..++...++.....|... .+..++..+-
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~----------~~~~ll~~~a~~l~~~g~~~-----------~l~~~l~~lp 401 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ----------LLRDILLQHGWSLFNQGELS-----------LLEECLNALP 401 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH----------HHHHHHHHhHHHHHhcCChH-----------HHHHHHHhCC
Confidence 44555666777888888877776653321 12334455566665555544 3334433321
Q ss_pred h-cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 122 R-IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 122 ~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
. ....++......+.++...|++++|...+..+....+. .......++.++...|++++|...+++++..
T Consensus 402 ~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 402 WEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred HHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 0 11234455667777778888888888888777654221 1233445667777788888888888888775
Q ss_pred CCCCch----hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 192 HPSCPG----AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 192 ~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
.|.... .....+|.++...|++++|...+++++...... ..++..++.++...|+ +..|...+.+++
T Consensus 482 ~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~al 558 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF---LQAAYETQEKAF 558 (903)
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 444311 234557777777888888888888877653221 2234566677777777 777777777766
Q ss_pred HhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 262 EIYPY--------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (942)
Q Consensus 262 ~~~p~--------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (942)
..... ....+..++.+++..|++++|...+..++..... .......+..+|.++...|+++.|...+..+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54211 1122334555556666666666666555443211 1112334444555556666666666655555
Q ss_pred HH
Q 002286 332 VK 333 (942)
Q Consensus 332 ~~ 333 (942)
..
T Consensus 639 ~~ 640 (903)
T PRK04841 639 EN 640 (903)
T ss_pred HH
Confidence 43
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.5e-12 Score=140.08 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=180.1
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 599 (942)
..|.+..++..++..+...|++++|+...+..+..+|+....++.+|.++...+++.++..+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 67888999999999999999999999999999999999999999999999999887776655 44444333
Q ss_pred hhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002286 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (942)
..++ .+..++-..+...+. ..++++.+|.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3344 333333333333333 56689999999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH------HHH
Q 002286 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA------QIL 753 (942)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~ 753 (942)
++|..|... ++++|+.++.+++.. +...++|..+.+++++.+...|..-+. .+.
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~-------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR-------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH-------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 999999999999885 344557777777777777764333332 222
Q ss_pred HHHH------------HHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHH
Q 002286 754 LYLA------------RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (942)
Q Consensus 754 ~~l~------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 796 (942)
..++ ..|...+++++++.+++.+++.+|.|.-+++.++.||..
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3333 677778899999999999999999999999999999773
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-11 Score=108.34 Aligned_cols=209 Identities=16% Similarity=0.086 Sum_probs=168.6
Q ss_pred HcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchH
Q 002286 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 131 (942)
Q Consensus 52 ~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 131 (942)
...+.++-.++.+.++...+...+.+ +.-.++-.+..+-+-.|+.. -|..++++.....|++..+.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~---e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV~ 89 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGD---EIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRVG 89 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCc---hHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhHH
Confidence 34455666666655543222110111 22223333344444445444 89999999888889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
...|..+-..|++++|+++|+..+..+|.|...+-..-.+...+|+-.+|++.+...++..+.+ ..+|..++.+|...|
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999888888889999999999999999999999 788999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 275 (942)
+|++|.-++++++-..|.++..+..+|.++...|-..++.-|..+|.++++++|.+..+++.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 9999999999999999999999999999999888888899999999999999997777666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=113.69 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=155.3
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.+...+-.....+|.+..+ ...+..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 4556666667778888888 888999999999999999998888888888888888889999999999999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
.|++ ..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9998 78899999999999999999999999999999999999999999999998 8999999999888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
..++.+....|++..|..+...-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 888888888888888877765533
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-09 Score=132.65 Aligned_cols=366 Identities=15% Similarity=0.086 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
++.+|+..+..+-.. +.-.......|..+...|++..+...+..+-. ....++......+.++...|++++|...+..
T Consensus 356 ~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 356 FPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344566555443111 11123344466777888988887777665411 1123344567778888999999999999998
Q ss_pred HHHhCCCC--------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhccHHhHHHHH
Q 002286 188 ALQVHPSC--------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 188 ~l~~~p~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
+....+.. ...+...+|.++...|+++.|...+++++...|... .+...+|.++...|+ +++|.
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~ 511 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARAL 511 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHH
Confidence 87653321 133445578888999999999999999998655432 345677888888999 99999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHHHhcCCHHH
Q 002286 255 EKMQRAFEIYPYC------AMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 255 ~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~ 323 (942)
..+.+++...... ..++..++.++...|+++.|...+.+++...... +.....+..+|.++...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999998753321 2456778999999999999999999988643221 2233456678999999999999
Q ss_pred HHHHHHHHHHhcCC--CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHH----HHHHHHHHHcCCHHH
Q 002286 324 AGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEK 394 (942)
Q Consensus 324 A~~~~~~a~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~ 394 (942)
|...+.+++..... ......++..+|.++...|+++.|...+..+....+.. .... ......+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 99999998864321 12234556678999999999999999999997753321 1111 112344556789999
Q ss_pred HHHHHHHHHHhCcCcH----HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 002286 395 AQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 395 A~~~~~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
|...+.......+... ..+..++.++ ..|++++|...+++++......+... ...++..+|.++...|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998877654322222 1245778888 99999999999999999876654432 2367888999999999999999
Q ss_pred HHHHHHhhcc
Q 002286 469 QSFKDALGDG 478 (942)
Q Consensus 469 ~~~~~al~~~ 478 (942)
..+.+++...
T Consensus 752 ~~L~~Al~la 761 (903)
T PRK04841 752 RVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHh
Confidence 9999999854
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=117.38 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HHhcC--HH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 731 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~-~~~g~--~~ 731 (942)
++.++++..+++++..+|++..+|..+|.++...|++++|+..|++++...| +++.++.++|.++ ...|+ ++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 8899999999975 67787 59
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 732 ~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
+|+..++++++. ++.++.+++.+|.+++..|++++|+.+|++++...|.+.
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999 667789999999999999999999999999999999764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=129.01 Aligned_cols=219 Identities=17% Similarity=0.192 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~ 121 (942)
.-..+|..+...|-...|+.++++. ..+.....+|...|+.. +|..+..+-+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~l 451 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQEL 451 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHh
Confidence 4478899999999999999999864 35667788999999766 7877777777
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHh
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 201 (942)
+ .|+++..|..+|.+....--|++|.++++.. +..+...+|...+..++|.++...++..++++|-. ...|+
T Consensus 452 e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf 523 (777)
T KOG1128|consen 452 E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWF 523 (777)
T ss_pred c-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHH
Confidence 7 7788999999999988888888888888765 34477778888888999999999999999999998 77899
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.|.++++++..|..+|.+++.++|++..+|.+++..|...++ -.+|...+.++++.+-.+..+|-+...+....
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 999999999999999999999999999999999999999999998 89999999999999988888887777777888
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 002286 282 GQHFLVEQLTETALAVTN 299 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~ 299 (942)
|.+++|.+.+.+.+....
T Consensus 601 ge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred ccHHHHHHHHHHHHHhhh
Confidence 888888888887775543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=111.40 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=108.7
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
..|.+++..+|.+....+.+|..++..|++++|...|+.++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
+ +..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77788999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=109.17 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 002286 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (942)
Q Consensus 145 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (942)
..+...+-.....+|.+..+ ...+..+...|+-+.++.+..++...+|.+ ..+...+|...+..|++..|+..+.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666667777789999999 999999999999999999999999889988 6667779999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 002286 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (942)
Q Consensus 225 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 304 (942)
...|++..+|..+|.+|.+.|+ ++.|...|.+++++.|.++.+..+++..++-.|+++.|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999888654 445
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
..+..+++.+....|+++.|.....+-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6788889999999999998887765443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-07 Score=99.33 Aligned_cols=237 Identities=14% Similarity=0.064 Sum_probs=133.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHH
Q 002286 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (942)
Q Consensus 139 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (942)
+..+++.+|.....++++..|+...+....|.++++.|++++|..+++..-...+++ ....-.+-.||..+|+.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHHH
Confidence 445677778888888888888777777778888888888888886666655555554 5556667778888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 002286 219 AFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-TGQHFLVEQLTETALAV 297 (942)
Q Consensus 219 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~a~~~~~~~~~~ 297 (942)
+|++++..+|+ .+.+..+-..|.+.+. |.+-.+.--+..+..|.++..+.....+.+. ....+.
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~----------- 163 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE----------- 163 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc-----------
Confidence 88888888887 6666667777777666 4443333344445666665333222222211 111100
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH-HHHHhC-CCc
Q 002286 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE-KVLEIY-PDN 375 (942)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~-p~~ 375 (942)
.....+. .-|...+++.++..+.-....+ ....-.++...|++++|...+. ...+.. +.+
T Consensus 164 -----~~~~i~l------------~LA~~m~~~~l~~~gk~~s~aE-~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~ 225 (932)
T KOG2053|consen 164 -----LLDPILL------------ALAEKMVQKLLEKKGKIESEAE-IILYLLILELQGKYQEALEFLAITLAEKLTSAN 225 (932)
T ss_pred -----cccchhH------------HHHHHHHHHHhccCCccchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHhccccc
Confidence 0000111 1122333333331100000111 1112234455666777777662 233332 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
..........+...+++.+-.+...+++..++++
T Consensus 226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 226 LYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 3444455556666677777777777777776665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=130.57 Aligned_cols=156 Identities=14% Similarity=0.001 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
+++.-+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 44444555566789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
+|++ ...++.+|.++.++|++++|...|++++..+|++..++..+|.++...|+ .++|...|++++....+-...+
T Consensus 150 ~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 150 GSSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHH
Confidence 9999 78899999999999999999999999999999999999999999999999 9999999999999876655443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=109.20 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=111.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (942)
+.|++++..+|++..+...+|..+...|++++|+..|++++...| .++.++.++|.++..+|++++|+..|+.++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 742 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
.. .+.++..++.+|.++...|++++|+..|+++++..|++....
T Consensus 79 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 AL--DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 98 566788999999999999999999999999999999886643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=121.92 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
...-..++.++...|-..+|+..|++. ..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------------------------------------------------em 426 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------------------------------------------------EM 426 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------------------------------------------------HH
Confidence 356667899999999999999999865 34
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcccc
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 607 (942)
+-....+|...|+..+|..+..+-++ .|+++..|..+|.+.....-+++|.++.+.. +..+...+|......+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccch
Confidence 56678899999999999999999998 6666788888877776666666666666543 3447778888888899
Q ss_pred chHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 002286 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (942)
Q Consensus 608 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 687 (942)
++.++.+.|+..++++|- ...+++.+|-+ +.+. +++..|...|..++..+|++..+|++++..|..
T Consensus 500 ~fs~~~~hle~sl~~npl-q~~~wf~~G~~-ALql------------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPL-QLGTWFGLGCA-ALQL------------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred hHHHHHHHHHHHhhcCcc-chhHHHhccHH-HHHH------------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 999999999999999887 77889999988 8888 999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 002286 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (942)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~ 762 (942)
.|+-.+|...++++++.+- .+..+|-|.-.+....|.+++|++.|.+.+..-....|+.++..+......
T Consensus 566 ~~~k~ra~~~l~EAlKcn~-----~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNY-----QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HhhhHHHHHHHHHHhhcCC-----CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 9999999999999999874 678999999999999999999999999998865555567777666655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-07 Score=95.90 Aligned_cols=549 Identities=13% Similarity=0.094 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH--------HH---hCCCCHHHHHHHHHHHHhc
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV--------LE---ADRDNVPALLGQACVEFNR 175 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~--------l~---~~p~~~~~~~~~a~~~~~~ 175 (942)
.|+.+.|.+...-+ .+..+|-++|....+..+.+-|.-++-.+ ++ .+|+ ..-...|.+....
T Consensus 741 iG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHH
Confidence 35555555544432 12346777777777777777666555322 11 1222 2223334455566
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~ 255 (942)
|-.++|+.+|.+.-+. -.+-..|...|.+++|.+.-+.-=.+. -...++..+..+...+| .+.|++
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D---i~~Ale 879 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD---IEAALE 879 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc---HHHHHH
Confidence 6666666666665331 223445555666666665544311111 12345555655556666 666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 002286 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (942)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 335 (942)
+|+++-.. . . .+.....++..+++.|-+- ..+...|.+.|..+...|+.+.|+.+|..+..
T Consensus 880 yyEK~~~h--a-f-------ev~rmL~e~p~~~e~Yv~~-------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 880 YYEKAGVH--A-F-------EVFRMLKEYPKQIEQYVRR-------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHhcCCh--H-H-------HHHHHHHhChHHHHHHHHh-------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 66653110 0 0 0111111222222222111 22346788889999999999999999988864
Q ss_pred CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c--
Q 002286 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------P-- 407 (942)
Q Consensus 336 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p-- 407 (942)
|+.+..+..-+|+.++|....++ ..+..+.+.+|..|...|++.+|+..|.++-... .
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66667777778888888776554 4567788899999999999999999888765432 1
Q ss_pred CcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccc
Q 002286 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (942)
Q Consensus 408 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (942)
+..+-+.+++..-...+.-.|..+|+..--. ...-..+|.+.|.+.+|++.--+...-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~------------~~~AVmLYHkAGm~~kALelAF~tqQf---------- 1064 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGY------------AHKAVMLYHKAGMIGKALELAFRTQQF---------- 1064 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchh------------hhHHHHHHHhhcchHHHHHHHHhhccc----------
Confidence 1111122222221233444444444432111 111233455666666665543222110
Q ss_pred ccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHH------HHhC------
Q 002286 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI------LFKY------ 555 (942)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------l~~~------ 555 (942)
..+.-....+ ....++.++..-+..+....+|++|..++-.+ +.+.
T Consensus 1065 ---------------------~aL~lIa~DL-d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~ 1122 (1416)
T KOG3617|consen 1065 ---------------------SALDLIAKDL-DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR 1122 (1416)
T ss_pred ---------------------HHHHHHHHhc-CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 0000000000 23346778888888899989999988766543 3211
Q ss_pred ----------CC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----------c-----------CCChhH
Q 002286 556 ----------QD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKV----------N-----------GKYPNA 595 (942)
Q Consensus 556 ----------p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----------~-----------p~~~~~ 595 (942)
|. ....+..+|.++.++|.|..|-+-|.++=.. . ....++
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEi 1202 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEI 1202 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecccccee
Confidence 10 0345566677777777777766665543110 0 001111
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCH
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 675 (942)
|. ++.-|++.-+|..--+.++.+...+.+. .++-.|++. |-..+..+-- .-.+|++|.-.++.+
T Consensus 1203 YI-mAANyLQtlDWq~~pq~mK~I~tFYTKg--qafd~LanF-Y~~cAqiEie----e~q~ydKa~gAl~eA-------- 1266 (1416)
T KOG3617|consen 1203 YI-MAANYLQTLDWQDNPQTMKDIETFYTKG--QAFDHLANF-YKSCAQIEIE----ELQTYDKAMGALEEA-------- 1266 (1416)
T ss_pred ee-ehhhhhhhcccccChHHHhhhHhhhhcc--hhHHHHHHH-HHHHHHhhHH----HHhhhhHHhHHHHHH--------
Confidence 11 2222233333333333333333322221 122234444 3333111000 002222222222111
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HH
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (942)
+.++.+...-..+...+....+.. ....+.+..-.++. .+..+.|...+.++..- .-++ ..
T Consensus 1267 ------~kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~~i~qc~~lleep-~ld~~Ir~~~ 1331 (1416)
T KOG3617|consen 1267 ------AKCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAADGIRQCTTLLEEP-ILDDIIRCTR 1331 (1416)
T ss_pred ------HHHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHHHHHHHHHHhhCc-CCCCcchhHH
Confidence 112221111112222222222211 01112222222232 36677777777777652 2222 56
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
++-.|...+....+|..|-..++.+....|+-.
T Consensus 1332 ~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1332 LFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 778888999999999999999999999999643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.7e-11 Score=102.19 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=99.5
Q ss_pred hhcC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh
Q 002286 121 SRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 121 ~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
..++ ++.-+..+..|..++..|++++|...|+.+...+|.+...|+++|.++..+|+|.+|+..|.+++.++|++ +.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chH
Confidence 3455 66778899999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
++..|.|++..|+.+.|+..|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999998763
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=126.48 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
+..-+.-...-+.|....+...|-+++.-. ..|+ ....++..||.+...+|..+ +|..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~ 112 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYV--RRYP----HTELFQVLVARALEAAHRSD-----------EGLAVWRGI 112 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHH--Hhcc----ccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHH
Confidence 344555556666777777776666654321 1122 34678889999998888887 999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
+...|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~ 191 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGY 191 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988888 8889
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
..+|.++...|+.++|...|++++....+-...
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999987655444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=116.13 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=169.1
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc--CCChhHHHHhh
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 600 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~ 600 (942)
......+.+.+++..+|++...+.-... ..+....+...++..+...++.+.++..++..+... +.++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4566778889999999988765543322 223333555556655555456666666665544332 23445666677
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.++...|++++|+..+.+. ...........+ |+.. ++++.|.+.++.+-+.+.+.+.....
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi-~L~~------------~R~dlA~k~l~~~~~~~eD~~l~qLa 170 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQI-LLKM------------NRPDLAEKELKNMQQIDEDSILTQLA 170 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH-HHHT------------T-HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 8888899999998887653 134444445556 7777 88999999999998888888877777
Q ss_pred HHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 002286 681 AGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 758 (942)
Q Consensus 681 la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~ 758 (942)
.+++....| .+.+|.-+|+.+.+..+ .++.++..+|.++..+|+|++|.+.+++++.. ++.++.++.+++-
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~-----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv 243 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFG-----STPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHH
Confidence 788877766 68999999999877665 67888888999999999999999999999887 5667889999999
Q ss_pred HHHHcccH-HHHHHHHHHHHHhCCCChhhH
Q 002286 759 THYEAEQW-QDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 759 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 787 (942)
+....|+. +.+.+++.++...+|++|-+.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999988 667778888888899876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-06 Score=92.29 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.++|.+|+....+.++..|+.+.+....|.++++.|+.++|..+++..-...+++...+-.+-.+|...|++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46788999999999999999999999999999999999999988888777788888889999999999999999999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+++..+|+ ....+.+=.+|.+.+.|.+-.+.--+..+..|+++-.+.....+.+.
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 99999999 45677788899999998887777777777889887765555444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=110.56 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+-..|.-+++.++|.+|+..|.++|.++|+|+..|-.+|.+|.+.|.|+.|++.++.++.++|.. ...|..+|.+|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHcc
Confidence 33455666666666666666666666666666666666666666666666666666666666666 55566666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
|++.+|+..|+++|+++|++...+..|..+-...+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 666666666666666666666555555544444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-09 Score=102.89 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=125.8
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 200 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~ 200 (942)
.++..++..|..++..|++++|+..|+.++...|..+.+ .+.+|.++++.++|++|+..+++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356678888999999999999999999999998887654 48888999999999999999999999988873 4556
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
+.+|.++..++.- .+......++. ..|.....+|+..|++.++..|++.-+-.
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~-------- 162 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTD-------- 162 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHH--------
Confidence 7777775544311 11111111111 11122255677777777777776652211
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
|...+..+. .....--+..|..|...|.|..|+.-++.+++..+..+....+++.++..|...|..++
T Consensus 163 ------A~~rl~~l~------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 163 ------ATKRLVFLK------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 111110000 00112233556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 002286 361 ALTNFEK 367 (942)
Q Consensus 361 A~~~~~~ 367 (942)
|......
T Consensus 231 a~~~~~~ 237 (243)
T PRK10866 231 ADKVAKI 237 (243)
T ss_pred HHHHHHH
Confidence 6555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=114.78 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC--ChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG--DFRSALTNFEKVLEIYPDNCETLKALG 383 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (942)
+.......++...++++.|.+.++.+.+ .+++........+.+.+..| .+.+|...|+.+....+.++..+..++
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4444445555555555555555555443 22333333333333333333 355555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCH
Q 002286 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (942)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (942)
.++..+|++++|...+.+++..+|+++.++.+++.+. ..|+.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666655555555555555555555 55544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-09 Score=103.22 Aligned_cols=187 Identities=10% Similarity=-0.002 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTW---VGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYS 179 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~---~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~ 179 (942)
..|+|++|+..|++++...|..+.+. +.+|.+++..|++++|+..|+++++.+|+++ .+++.+|.++...+.
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~-- 121 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD-- 121 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch--
Confidence 46899999999999999999886554 8899999999999999999999999999874 567777776544421
Q ss_pred HHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHhhccHHhHHHHHHH
Q 002286 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDLQANEAAGIRKGMEK 256 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~A~~~ 256 (942)
..+......++.. .......+|+..|++.++..|++.-+- ..+..+....
T Consensus 122 ---~~~~~~~~~~~~~------------rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l------------ 174 (243)
T PRK10866 122 ---SALQGFFGVDRSD------------RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL------------ 174 (243)
T ss_pred ---hhhhhccCCCccc------------cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH------------
Confidence 1222222222111 112234578899999999999875432 1122111111
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
..--...|..|+..|.|..|+.-++.++...+..+...++++.++.+|...|..++|........
T Consensus 175 -----------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 -----------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11223568889999999999999999999998999999999999999999999999988776543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-09 Score=106.73 Aligned_cols=152 Identities=19% Similarity=0.247 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
|....++++.|..++..|.+++|+..++..+...|++ +..+...+.++...|+.++|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 6677778888888888888888888888888888877 666777788888888888888888888888888777788888
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc
Q 002286 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (942)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 318 (942)
..++..|+ +.+|+..+.+.+..+|+++..|..|+..|...|+..+ .....+..+...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~--------------------a~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE--------------------ALLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH--------------------HHHHHHHHHHhC
Confidence 88888887 7788888888888888888888888888777776543 333445566677
Q ss_pred CCHHHHHHHHHHHHHh
Q 002286 319 GDYEKAGLYYMASVKE 334 (942)
Q Consensus 319 g~~~~A~~~~~~a~~~ 334 (942)
|++++|+..+..+.+.
T Consensus 439 G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 439 GRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-09 Score=109.14 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=142.3
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|....+++..+..++..|.+++|+..++..+...|+|+..+...+.+++..++..+|++.+++++..+|.. ..+++.+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~ 380 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNL 380 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHH
Confidence 367788999999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
|..+.+.|++.+|+..+.+.+..+|+++..|..|+..|..+|+ ..+ +....+..++..|+
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~---~~~-----------------a~~A~AE~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN---RAE-----------------ALLARAEGYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---hHH-----------------HHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998 333 34455677888999
Q ss_pred HHHHHHHHHHHHhcC
Q 002286 284 HFLVEQLTETALAVT 298 (942)
Q Consensus 284 ~~~a~~~~~~~~~~~ 298 (942)
++.|+..+..+.+..
T Consensus 441 ~~~A~~~l~~A~~~~ 455 (484)
T COG4783 441 LEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-10 Score=107.74 Aligned_cols=121 Identities=20% Similarity=0.263 Sum_probs=105.4
Q ss_pred HHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (942)
Q Consensus 89 l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 168 (942)
++.-.-..|... .+.++|.+|+..|++|+.++|.++..|..+|.+|.+.|.++.|++.++.++.++|....+|..+
T Consensus 80 ~AE~LK~eGN~~----m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 80 LAESLKNEGNKL----MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHH----HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 344444444433 5688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHH
Q 002286 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 169 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~ 214 (942)
|.+++.+|++.+|+..|+++|.++|++ ..++-.+..+-..++...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999 666666666666555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-09 Score=102.03 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
.+..++..|..+...|++.+|+..|+.++...|.. ..+.+.+|.++...|++..|+..+++.+...|+++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----
Confidence 44556666666666666666666666666666554 4556666666666666666666666666666655431
Q ss_pred hhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002286 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680 (942)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 680 (942)
.++++.+|.. ++....... ....+.+...+|+..|+..+...|++.++-
T Consensus 79 ---------------------------~~A~Y~~g~~-~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-- 127 (203)
T PF13525_consen 79 ---------------------------DYALYMLGLS-YYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE-- 127 (203)
T ss_dssp ---------------------------HHHHHHHHHH-HHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH--
T ss_pred ---------------------------hhHHHHHHHH-HHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH--
Confidence 1233333333 222211110 000111778899999999999999876654
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHHHHH
Q 002286 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLART 759 (942)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l~~~ 759 (942)
+|...+..+.+. ...--+.+|..|++.|.+..|+.-|+.+++.||+++. ..++..++.+
T Consensus 128 ------------~A~~~l~~l~~~--------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 128 ------------EAKKRLAELRNR--------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp ------------HHHHHHHHHHHH--------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHH--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 344444444432 2445567899999999999999999999999988777 7899999999
Q ss_pred HHHcccHHHHHH
Q 002286 760 HYEAEQWQDCKK 771 (942)
Q Consensus 760 ~~~~g~~~~A~~ 771 (942)
|.+.|..+.|..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 999999885543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-06 Score=93.28 Aligned_cols=439 Identities=14% Similarity=0.093 Sum_probs=256.0
Q ss_pred hHHHHHHHhccCChHHHHHHH--HHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhh
Q 002286 27 SDILDILKAEQAPLDLWLIIA--REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 104 (942)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~~a--~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~ 104 (942)
.-|.+++..+.++....-.+- ..|...|+.|.|.+-+.-+-+. .+|..++....+..+.+-.+
T Consensus 713 ~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--------------~vW~nmA~McVkT~RLDVAk- 777 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--------------SVWDNMASMCVKTRRLDVAK- 777 (1416)
T ss_pred hhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--------------HHHHHHHHHhhhhccccHHH-
Confidence 557777778888776553332 2355679999998887765332 25555555555444333110
Q ss_pred hhHHHHHH--HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 002286 105 EKEEHFIL--ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (942)
Q Consensus 105 ~~~~~~~~--A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~ 182 (942)
.--|+... ....+.++.+ +|. ..-...|.+....|..++|..+|++.-+.+ .+-..|...|.+++|.
T Consensus 778 VClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~ 846 (1416)
T KOG3617|consen 778 VCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAF 846 (1416)
T ss_pred HhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHH
Confidence 01122222 2344455543 333 344556788899999999999999876543 4456678889999998
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 262 (942)
++.+.-=++. ....++..+.-+...++.+.|+++|+++-. | -.++...| .+ +..+++.|-+
T Consensus 847 eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~--h-afev~rmL-------~e---~p~~~e~Yv~--- 907 (1416)
T KOG3617|consen 847 EIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGV--H-AFEVFRML-------KE---YPKQIEQYVR--- 907 (1416)
T ss_pred HHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCC--h-HHHHHHHH-------Hh---ChHHHHHHHH---
Confidence 8765432222 244678889989999999999999998521 1 11111111 11 3334444322
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 002286 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (942)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 342 (942)
...++..|.+.|..+...|+.+.|+.+|..+ .-|+.+.++.+-+|+.++|-.+-++. ...
T Consensus 908 -~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----------~D~fs~VrI~C~qGk~~kAa~iA~es--------gd~ 967 (1416)
T KOG3617|consen 908 -RKRDESLYSWWGQYLESVGEMDAALSFYSSA-----------KDYFSMVRIKCIQGKTDKAARIAEES--------GDK 967 (1416)
T ss_pred -hccchHHHHHHHHHHhcccchHHHHHHHHHh-----------hhhhhheeeEeeccCchHHHHHHHhc--------ccH
Confidence 2245577888888888999999999988876 44677788888888888887766543 334
Q ss_pred hhhhcHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHHH
Q 002286 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFI 414 (942)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~ 414 (942)
-+.+.+|..|...|++.+|+..|.++-.. ...| +.--.|+.+....| +.-.|..+|+..- .+ ..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~~d~v~aArYyEe~g----~~---~~ 1039 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGGSDLVSAARYYEELG----GY---AH 1039 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCchhHHHHHHHHHHcc----hh---hh
Confidence 55777888888888888888888776432 1111 01111222222222 3333444444321 00 01
Q ss_pred HHHHHH-hcCCHhHHHHHHHH-----HHHH-HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcccc
Q 002286 415 DLGELL-ISSDTGAALDAFKT-----ARTL-LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (942)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~-----a~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (942)
.-..+| ..|-+.+|++..-. ++++ ..+.....++.++..-+..+....+|++|..++-.+........+-.+.
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112234 55555555544321 2222 2333455678999999999999999999998876654421100000000
Q ss_pred ccchhhhhhhhhHhhhhhhhhhhhccCCCCCC-CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHH
Q 002286 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVE-LPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (942)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (942)
...-...+.++.-..+... .......++..+|.+..++|.|..|.+-|.++
T Consensus 1120 -------------nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1120 -------------NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred -------------CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 0000111111111111100 11124557888999999999999999888765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=95.55 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=92.3
Q ss_pred HhC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 156 EAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 156 ~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
..+ ++.....+.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+..|.+++.++|+++.++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 445 6677888889999999999999999999999999988 77788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccHHhHHHHHHHHHHHHHhCC
Q 002286 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p 265 (942)
+.+|.+++..|+ ...|...|+.++....
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHhc
Confidence 999999999988 8888888888887753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-08 Score=98.16 Aligned_cols=187 Identities=19% Similarity=0.268 Sum_probs=106.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~ 201 (942)
.+..++..|..++..|+|.+|+..|+.++...|.+ +.+.+.+|.+++..|+|..|+..+++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35667777888888888888888888887777654 46777777888888888888888888887777763 34556
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.+++... ...+ ....+.....+|+..|+..+...|+++.+-.
T Consensus 84 ~~g~~~~~~~---------~~~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQI---------PGIL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHH---------HHHH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhC---------ccch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 6666655441 0000 1112223378899999999999998873321
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (942)
|...+..+. .....--+.+|..|...|.+..|+..++.+++.++..+....++..++.++...|..+
T Consensus 129 -----A~~~l~~l~------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 129 -----AKKRLAELR------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp -----HHHHHHHHH------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred -----HHHHHHHHH------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 111111111 0111333445666666666666666666666655555555555555666666665555
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-05 Score=82.88 Aligned_cols=416 Identities=11% Similarity=0.032 Sum_probs=220.1
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
++-++.+|.|..+|+.+..-+..+ .+++....|++.+...|..+.+|.......+..++|+....+|.++|..--+- .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 556788999999999998888777 99999999999999999999999999999999999999999999998754332 2
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHH----HHh---hCCCCHHHHHHHHHHHHhh---cc---HHhHHHHHHHHHHHHHhC
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQR----ALQ---LDPENVEALVALAVMDLQA---NE---AAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~----al~---~~p~~~~~~~~l~~~~~~~---~~---~~~~~~A~~~~~~~~~~~ 264 (942)
-+...+-.+....|+...+....-+ ++. .++.....|...+..+..- |. ...++.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 2223334444444554444333333 322 3455555565555444322 11 011333444455544332
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCC
Q 002286 265 PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPH 339 (942)
Q Consensus 265 p~~~~-~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~ 339 (942)
-.+.. .|. +|..-+.-.+.+. ..-.+-.....|..|...+++...... ..|
T Consensus 168 m~nlEkLW~----------DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWK----------DYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHH----------HHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 22211 111 1111111111100 000111122234444444444432111 011
Q ss_pred CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
..+.... .+--.+.+.....++....|+-- ...|. ...-.-.+++++..-+-.+.+|+..+
T Consensus 224 ~vp~~~T---------~~e~~qv~~W~n~I~wEksNpL~--------t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s 286 (656)
T KOG1914|consen 224 AVPPKGT---------KDEIQQVELWKNWIKWEKSNPLR--------TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYS 286 (656)
T ss_pred CCCCCCC---------hHHHHHHHHHHHHHHHHhcCCcc--------cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1000000 00001112222222221111000 00000 00111223333333344444444443
Q ss_pred HHH-hc-------CC-------HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhcch
Q 002286 418 ELL-IS-------SD-------TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK---GEFESAHQSFKDALGDGI 479 (942)
Q Consensus 418 ~~~-~~-------~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~ 479 (942)
..+ .. |+ .+++..+|++++...... +..+++.++..--.. ...+....++.+++...
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~- 361 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE- 361 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh-
Confidence 333 22 22 456666666666544331 122222222221111 12444555555555521
Q ss_pred hhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH
Q 002286 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 559 (942)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (942)
..+-..++..+...-.+..-...|..+|.++-+..-...
T Consensus 362 -----------------------------------------~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 362 -----------------------------------------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred -----------------------------------------ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 112233455555555566667888888888876443333
Q ss_pred HHHHHHHHH-HHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 560 DAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 560 ~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
.++..-|.+ |...++..-|...|+-.++..+++|..-..+...+...++-..|...|++++..
T Consensus 401 hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 401 HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 455544444 556789999999999999999999998888899999999999999999999886
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-09 Score=112.86 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+...|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ +.+++.+|.++..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999988 77788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
|++++|+..|+++++++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777664443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-07 Score=90.51 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=116.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-----CHHHHHHHH
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-----PIEVLNNIG 455 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~l~ 455 (942)
....+.++.+...+..-.+.+.....+.+.+....+..+ ..|++.+|.+.+...-- ....+... .-..++++|
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcc
Confidence 334456666777777777777777778888888888888 89999998887654321 11112111 224679999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc-chhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 456 VIHFEKGEFESAHQSFKDALGD-GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
.++++.|.|.-+..+|.+++.. +... ..+ +.....-.-.....-.++|+.|..
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL--~~g------------------------~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQL--RNG------------------------LKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHH--hcc------------------------CCCCcceehhcccchhhHHhhhHH
Confidence 9999999999999999999962 1100 000 000000000233467799999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 571 (942)
|...|++-.|.++|.++....-.++..|++++.+...
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-09 Score=91.09 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~ 202 (942)
+..++..|..+...|++++|+..|..++..+|++ +.+++.+|.+++..|+++.|+..|+.++...|+.+ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999988876 56889999999999999999999999999988863 456888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+|.++...|++++|...+.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-08 Score=93.81 Aligned_cols=305 Identities=15% Similarity=0.108 Sum_probs=197.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCCchhhhhcHHHHHHH
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLK 354 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~~~ 354 (942)
++...++++++....+.+...++.......+-.+..+...+|.|++++.+--..+... .+......++.+++..+..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444443332223333444455566666777776665544333211 1222334567777777777
Q ss_pred cCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hc
Q 002286 355 LGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-IS 422 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~ 422 (942)
..++.+++.+....+...... ..+...++..+..++.++++++.|+++++...++ ..++..++.++ ..
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 778888877777666542221 2466678888888888999999999888764332 35678888888 88
Q ss_pred CCHhHHHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhh
Q 002286 423 SDTGAALDAFKTARTLLKKAG-EEVP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 497 (942)
.|+++|+-+..++.++....+ .+.+ ..+++.++..+...|....|.++.+++.+.....+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--------------- 240 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--------------- 240 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC---------------
Confidence 999999999999888877654 2222 35778899999999999999999999987532111
Q ss_pred hhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHH
Q 002286 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKA 571 (942)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~ 571 (942)
..+........+|.+|...|+.+.|..-|+.+......- ..++...+.++..
T Consensus 241 ----------------------dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 241 ----------------------DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred ----------------------ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 334466777889999999999999999999988643321 3444444544433
Q ss_pred cC-----ChhHHHHHHHHHHhhcCCC------hhHHHHhhhhhccccchHHHHHHHHHh
Q 002286 572 RN-----NLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 572 ~~-----~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
.. ..-.|++.-.+++++...- ...+..++.+|...|.-++-...+.++
T Consensus 299 ~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 299 LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 22 2234777777776654322 225566777777777666555555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-07 Score=89.81 Aligned_cols=256 Identities=15% Similarity=0.133 Sum_probs=171.2
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHhhccHHhHHHHHHHHHHHH----HhCCC--CHHHH
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA---VMDLQANEAAGIRKGMEKMQRAF----EIYPY--CAMAL 271 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~---~~~~~~~~~~~~~~A~~~~~~~~----~~~p~--~~~~~ 271 (942)
+..|.-++...++++|+..|.+.+..-.+...-+..+| .+....|. |++++..--..+ ..+.. .-.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~---y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGR---YKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666665554333222233333 22333333 444443322222 21111 12566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---CCchhhhh
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP---HEFIFPYY 346 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~ 346 (942)
..++..+....++.+++.+....+..+...+ .-......+|.++..++.++++++.|+.+.+..... .-...++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 7777777777888888888887776655544 234667779999999999999999999998743222 22235678
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPD----------NCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDA 410 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~ 410 (942)
.+|..+....++++|+.+..++.++... ..-+++.++..+...|..-.|.++.+++.++. |...
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999999876322 13467889999999999999999999988763 4456
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHF 459 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~ 459 (942)
.....+|.+| ..|+.+.|..-|+.+.......++... .+++...+.++.
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 6778899999 999999999999999988766543321 244444444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-05 Score=86.11 Aligned_cols=328 Identities=13% Similarity=0.130 Sum_probs=164.7
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHH
Q 002286 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVP 163 (942)
Q Consensus 104 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------------------~~p~~~~ 163 (942)
...+|+|+.|...++. +...|+....|..++.+.+..|+.--|..+|..+-. ...+-..
T Consensus 454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 3457899999987765 466788888899999999999988888777754321 1223344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
.+-..|.+....++|.+|..+|-. .+... -.+| .|..+.++++|+..-+- .-.|.........-..+..
T Consensus 533 fykvra~lail~kkfk~ae~ifle---qn~te-----~aig-my~~lhkwde~i~lae~--~~~p~~eklk~sy~q~l~d 601 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLE---QNATE-----EAIG-MYQELHKWDEAIALAEA--KGHPALEKLKRSYLQALMD 601 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHh---cccHH-----HHHH-HHHHHHhHHHHHHHHHh--cCChHHHHHHHHHHHHHHh
Confidence 555566666666667776665522 11111 1122 34455566666554331 1122211111111122222
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hcCCCCCchhHHHHHHHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL---------AVTNHGPTKSHSYYNLARS 314 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~~~~~~~la~~ 314 (942)
.|. -++|-+ +...+...+ .-..+|...|.+.+|......-. ......-...+.|-..|.+
T Consensus 602 t~q---d~ka~e-------lk~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdl 670 (1636)
T KOG3616|consen 602 TGQ---DEKAAE-------LKESDGDGL-AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDL 670 (1636)
T ss_pred cCc---hhhhhh-------hccccCccH-HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhH
Confidence 222 111111 111111111 11223444444443332221100 0000001123445555666
Q ss_pred HHhcCCHHHHHHHHHHHH------H--hcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002286 315 YHSKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (942)
Q Consensus 315 ~~~~g~~~~A~~~~~~a~------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (942)
+....++++|+++|++.- + .+.-+...+..--..|.-+...|+++.|+..|-.+-. +..-....
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~~kaieaa 742 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAA 742 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHH
Confidence 666667777777765432 1 1111112222233456667777888888777755421 11222233
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 002286 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (942)
Q Consensus 387 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (942)
.....+.+|+..++.+-.... ....|-.++.-| ..|+++.|.+.|.++- ....-...|-+.|++.
T Consensus 743 i~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccccHH
Confidence 445667777777765543321 223345566777 7888888877776542 2233345677778888
Q ss_pred HHHHHHHHHhh
Q 002286 466 SAHQSFKDALG 476 (942)
Q Consensus 466 ~A~~~~~~al~ 476 (942)
.|.+.-.+...
T Consensus 809 da~kla~e~~~ 819 (1636)
T KOG3616|consen 809 DAFKLAEECHG 819 (1636)
T ss_pred HHHHHHHHhcC
Confidence 88777766643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=89.13 Aligned_cols=129 Identities=25% Similarity=0.224 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
+|...++-.|.+|-.+|-.. -|.--|.+++.+.|.-+.++..+|..+...|+|+.|.+.|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56666677777777777655 7778888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (942)
+-.+....|..++--|+|.-|...+.+.-+.+|++|-.+ ..-.+-...-++.+|...+.+
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~--LWLYl~E~k~dP~~A~tnL~q 191 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS--LWLYLNEQKLDPKQAKTNLKQ 191 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH--HHHHHHHhhCCHHHHHHHHHH
Confidence 888888888888888888888888888888888874221 111111223456666654443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=99.05 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~ 186 (942)
.+..+.-++.-+..+|+|+..|..+|.+|+..|+++.|...|.+++++.|+|+..+.++|.+++... .-.++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4455566666666677777777777777777777777777777777777777777777776665542 3456666667
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
+++..+|.+ ..+++.+|..++..|++.+|...|+..+...|.+
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 777777666 5556666677777777777777777766666544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-09 Score=90.62 Aligned_cols=109 Identities=21% Similarity=0.289 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHH
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILL 754 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 754 (942)
.+++.+|..+...|++++|+..|.+++...|++. ..+.+++.+|.++...|+++.|+..|+.++..+|.++. +.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 4678899999999999999999999999887432 23678999999999999999999999999999877654 78999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCChhh
Q 002286 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (942)
Q Consensus 755 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 786 (942)
.+|.++...|++++|...+.+++..+|+++.+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 99999999999999999999999999988653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=89.70 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=135.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
...++.+|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 34677888999999999999999999999999999999999999999999999999999999999999 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a 287 (942)
+--|++.-|.+.+.+-.+.||+++---..+-...... + ..+|...+.+-..........++..... .|... .
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-d---P~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS-~ 215 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-D---PKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKIS-E 215 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-C---HHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhhcc-H
Confidence 9999999999999999999999875433222222222 2 5666554443333322222222222111 12111 1
Q ss_pred HHHHHHHHhcCCCCC----chhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 288 EQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 288 ~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
..+++++.....++. ...++++.+|..+...|+.++|...|+-++.
T Consensus 216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 223333332221111 1235666677777777777777777666664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=107.28 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+...|..++..|+|.+|+..|.+++..+|++ ..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5667889999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
|+ +++|+..|++++.++|+++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-05 Score=78.03 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhhcCCChh-HHHHhhhhhccccchHHHHHH
Q 002286 541 TVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 615 (942)
Q Consensus 541 ~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 615 (942)
.+++..+|+.++..-- .+...++.++..-...- ..+.....+++++.....++. ++..+.+.-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 6777788887776332 23344444444332222 366777888888887765554 566677776777778899999
Q ss_pred HHHhhccCCC-CchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHH
Q 002286 616 FRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (942)
Q Consensus 616 ~~~~~~~~~~-~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 694 (942)
|.++-+..-. ++.++..++-. |..+ ++..-|..+|+--++..++.+..-+.....+...++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 9999876543 35555544443 5555 8899999999999999999999988889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
..+|++++...- + ......+|..+-..-..-|+...++++=++-...||
T Consensus 455 R~LFEr~l~s~l-~-~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVL-S-ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccC-C-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999720 0 014567888888888888999999998888877776
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=89.12 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.6
Q ss_pred HhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhh
Q 002286 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
+..+.++.-+..+..|.-++..|++++|..+|+-..-.+|.++..|+++|.++..+|+|++|+..|..+..+++++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4455566677889999999999999999999999999999999999999999999999999999999999999988 666
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.+..|.|+..+|+.+.|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 88899999999999999999999998 4553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=97.72 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 756 (942)
.+..|.-+...|+|..|...|...++.+|++.+ .+.++|.||.+++.+|+|+.|...|..+.+.+|.++. |+.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566777788899999999999999999998854 6899999999999999999999999999999998887 8999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
|.+....|+.++|..+|+++++.+|+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999987654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.2e-05 Score=76.32 Aligned_cols=424 Identities=13% Similarity=0.103 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCc--hhhHhhHHHHHH-HcCCHHHHHHHHHHHHhhC---CCC----
Q 002286 163 PALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRY-KLGQLGKARQAFQRALQLD---PEN---- 230 (942)
Q Consensus 163 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~--~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~---- 230 (942)
.+++++|..+...| +...++++++..+...|.+. +..++.+|.+++ ...+++.|...++++..+. |..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666666666666 67777777777766666552 233455555443 3567777777777776542 222
Q ss_pred HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhH
Q 002286 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306 (942)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 306 (942)
.++...|+.++....+ .+..+...+++++++....| ...+.|+..+....++..|..++.--.... ++ ...
T Consensus 88 f~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA--d~-~~~ 162 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA--DH-ICF 162 (629)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc--ch-hhh
Confidence 2345566666666552 26666677777777665554 233444555555555555555432211100 00 000
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc---CChHHHHHHHHHHHHhCCCcH-------
Q 002286 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL---GDFRSALTNFEKVLEIYPDNC------- 376 (942)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~------- 376 (942)
.|+.+... ...+.++... .+...+...+..+.+....++
T Consensus 163 ~ylr~~ft-------------------------------ls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 163 PYLRMLFT-------------------------------LSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK 211 (629)
T ss_pred HHHHHHHH-------------------------------HHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 11111000 0011111111 122233333333333221111
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHHh----Cc----------------------C-cHHHHHHHHHHH---hcCCH
Q 002286 377 ETLKALGHI-YVQLGQIEKAQELLRKAAKI----DP----------------------R-DAQAFIDLGELL---ISSDT 425 (942)
Q Consensus 377 ~~~~~la~~-~~~~g~~~~A~~~~~~~l~~----~p----------------------~-~~~~~~~la~~~---~~~~~ 425 (942)
..+..+-.+ |...|+...+...+++.-.. .+ + ...++..+..+. ..|-+
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence 122233333 33446665555555443221 11 1 111222222222 45667
Q ss_pred hHHHHHHHHHHHHHHHcCCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhh
Q 002286 426 GAALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (942)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (942)
++|.++-++++....+..... . ...+..+..+-.-.|++.+|+.....+.+-..+...
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~------------- 358 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT------------- 358 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc-------------
Confidence 888888888887765543322 1 244556677778889999999999888764321000
Q ss_pred hhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcC
Q 002286 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-Y--VDAYLRLAAIAKARN 573 (942)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~l~~~~~~~~ 573 (942)
+.+ .....+.+.+.+|......|.++.|...|..+.+.-.. + +.+-.+++.+|...|
T Consensus 359 --------~~L------------lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~ 418 (629)
T KOG2300|consen 359 --------PLL------------LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIG 418 (629)
T ss_pred --------hHH------------HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhc
Confidence 000 11235667788888888899999999999998875433 2 456677888999988
Q ss_pred ChhHHHHHHHHHHhhcCCC----------hhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchh-----HHHhhhhHH
Q 002286 574 NLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGNWN 638 (942)
Q Consensus 574 ~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~ 638 (942)
+-+.-.+.++. +.|.+ ..+++..|...+..+++.+|...+.+.++.....|.. .+..+|++
T Consensus 419 ~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v- 494 (629)
T KOG2300|consen 419 DAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV- 494 (629)
T ss_pred cHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH-
Confidence 76655444443 44543 2367778888889999999999999999877544432 44456666
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 002286 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (942)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (942)
+... |+..++.+...-++++.
T Consensus 495 ~lsl------------gn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 495 FLSL------------GNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHh------------cchHHHHhccchHHHHH
Confidence 6666 77777777776666543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=99.29 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HH
Q 002286 674 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 751 (942)
Q Consensus 674 ~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 751 (942)
+....+..|..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++++|+..|+.+++.||+++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345556666655 5679999999999999999996532 3789999999999999999999999999999988766 99
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
+++.+|.++...|++++|+.+|+++++.+|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998864
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-07 Score=86.44 Aligned_cols=200 Identities=16% Similarity=0.194 Sum_probs=144.4
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH---H
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---L 596 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~ 596 (942)
..+..+++-|....+.|++++|...|+.+...+|.. ..+.+.++..+.+.++++.|+..+++.+.+.|.++.+ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356678888888888888888888888888888765 5577778888888888888888888888888877663 3
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (942)
+..|.+ ++.......++ ......|+..|+.++...|++.+
T Consensus 112 YlkgLs------------------------------------~~~~i~~~~rD----q~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLS------------------------------------YFFQIDDVTRD----QSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHH------------------------------------HhccCCccccC----HHHHHHHHHHHHHHHHHCCCCcc
Confidence 333333 11111111110 14566788889999999999877
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHH
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 755 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 755 (942)
+-.... -+..+... ...--..+|+.|.+.|.+..|+.-++.+++.+++.+. ..++..
T Consensus 152 a~dA~~--------------~i~~~~d~--------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKA--------------RIVKLNDA--------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHH--------------HHHHHHHH--------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 654322 22222221 2334456789999999999999999999999887766 789999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
+..+|+..|-.++|.+.-.-+-...|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999887766666666665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-07 Score=102.48 Aligned_cols=230 Identities=15% Similarity=0.190 Sum_probs=189.3
Q ss_pred EEeCCCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 002286 16 RVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY 95 (942)
Q Consensus 16 ~~~~~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 95 (942)
++|++.-|++++|+..++.+.|...-.|+..-......+..++|+++.++++..-. |. +..++..+|..+-.+-..
T Consensus 1434 ~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN---~R-EeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1434 ERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN---FR-EEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred hcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC---cc-hhHHHHHHHHHHHhHHHh
Confidence 45667789999999999999999999999999999999999999999999987521 22 222566666665555555
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (942)
Q Consensus 96 ~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 175 (942)
.|--+ .-.+.|++|.+.. +....+..+..+|...+++++|.++|+.+++...+....|..+|..++++
T Consensus 1510 yG~ee-----------sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1510 YGTEE-----------SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred hCcHH-----------HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 55333 5567888887654 23456778889999999999999999999998888889999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
.+-+.|..++.+++..-|.. ...+.-..|..-++.|+.+.++..|+..+..+|.-.+.|..+...-...|+ .....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHH
Confidence 99999999999999998883 134455678888899999999999999999999999999999999999888 88888
Q ss_pred HHHHHHHHhC
Q 002286 255 EKMQRAFEIY 264 (942)
Q Consensus 255 ~~~~~~~~~~ 264 (942)
.+|++++.+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 8999988764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-08 Score=93.35 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHH
Q 002286 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (942)
Q Consensus 178 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 257 (942)
.+.-+.-++.-+..+|++ ..-|..+|.+|..+|++..|...|.+++++.|++++.+..+|.++..+.+.....++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344444555556666666 4446666666666666666666666666666666666666666666555544455666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002286 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (942)
Q Consensus 258 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 298 (942)
++++..+|.+..+.+.||..++..|+|.+|...++.++...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=96.82 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=120.1
Q ss_pred CCCCc---chH----HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhc---------CChHHH
Q 002286 124 DMHEP---STW----VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDS 181 (942)
Q Consensus 124 ~p~~~---~~~----~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~~a~~~~~~---------g~~~~A 181 (942)
-|.+. .+| +.+|...+..+. .+.|..+|.+++ ..+|....++-.+|.|++.. .+..+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 35555 555 778888877774 567888999999 88999999999999988765 245678
Q ss_pred HHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 182 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
.....++++++|.+ +.++..+|.+++..|+++.|...|++++.++|+.+.+++..|.+....|+ .++|+..+++++
T Consensus 324 ~~~A~rAveld~~D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~al 399 (458)
T PRK11906 324 LELLDYVSDITTVD-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHh
Confidence 88888999999998 77788899999999999999999999999999999999999999999998 999999999999
Q ss_pred HhCCCCHHHH
Q 002286 262 EIYPYCAMAL 271 (942)
Q Consensus 262 ~~~p~~~~~~ 271 (942)
+++|....+-
T Consensus 400 rLsP~~~~~~ 409 (458)
T PRK11906 400 QLEPRRRKAV 409 (458)
T ss_pred ccCchhhHHH
Confidence 9998765443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=79.41 Aligned_cols=66 Identities=26% Similarity=0.533 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCC
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p 193 (942)
+..|..+|.+++..|++++|+..|.++++.+|+++.+++.+|.++...| ++.+|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455566666666666666666666666666666666666666666665 46666666666666555
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.8e-08 Score=90.06 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=98.4
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHh
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 201 (942)
|.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.. ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 3456678899999999999999999999999876653 4688999999999999999999999999999988 66788
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 267 (942)
.+|.++...|+...+...+..++.. +.+|+..+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8899999999877777666655421 677888888888888776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-08 Score=82.93 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
+++.+|..+...|++++|+..|..+++..|.+..++..+|.++...|++++|+..+++++...|.+ ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888888877 4667788888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 002286 210 LGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (942)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877766
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.9e-09 Score=83.54 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (942)
+|+++.|+..|++++..+|. +...++.+|.++++.|+|++|+.++++ ...+|.+ ...++.+|.|+..+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777777664 345566667777777777777777776 5555655 4455566777777777777777
Q ss_pred HHHHH
Q 002286 219 AFQRA 223 (942)
Q Consensus 219 ~~~~a 223 (942)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=93.78 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=90.3
Q ss_pred cchHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhhHh
Q 002286 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (942)
Q Consensus 128 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~ 201 (942)
...++..|..+ +..|+|++|+..|+.+++..|++ +.+++.+|.+++..|++++|+..|++++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677777776 56789999999999999999987 5789999999999999999999999999888876 366778
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.+|.++..+|++++|...|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 889999999999999999999999999876543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00028 Score=72.19 Aligned_cols=474 Identities=14% Similarity=0.073 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
.++..++..+...+ +.++..++++++..+...|.+. ..+.....+
T Consensus 8 ~aLlGlAe~~rt~~-PPkIkk~IkClqA~~~~~is~~----------------------------------veart~LqL 52 (629)
T KOG2300|consen 8 EALLGLAEHFRTSG-PPKIKKCIKCLQAIFQFQISFL----------------------------------VEARTHLQL 52 (629)
T ss_pred HHHHHHHHHHhhcC-ChhHHHHHHHHHHHhccCChHH----------------------------------HHHHHHHHH
Confidence 34555555555554 2236677777766666555432 122334445
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHhcCCCCCc----hhhhhcHHHHHHHcC-ChHHHHHHHHHHHHhCCCcH----HHHHH
Q 002286 312 ARS-YHSKGDYEKAGLYYMASVKEINKPHEF----IFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYPDNC----ETLKA 381 (942)
Q Consensus 312 a~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~----~~~~~ 381 (942)
|.+ +....+++.|...++++......-|.+ ..+...++.+|.... .+..+...+.++++.....+ ..++.
T Consensus 53 g~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQ 132 (629)
T KOG2300|consen 53 GALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQ 132 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 443 344566777777777776544333433 233455667776666 67777777777777655443 35566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cC---cHHHHHHH--HHHH-hcCCHhHHHHHHHHHHHHHHHcC-CCCCH----H
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKID-PR---DAQAFIDL--GELL-ISSDTGAALDAFKTARTLLKKAG-EEVPI----E 449 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~~l--a~~~-~~~~~~~A~~~~~~a~~~~~~~~-~~~~~----~ 449 (942)
++.++.-..++..|++.+.-..... |. ...+.+.+ +.++ ...+..+.......+-.+..... ++... .
T Consensus 133 Laql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lkv 212 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKV 212 (629)
T ss_pred HHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 7777777778877777743222111 11 11222222 2233 33344444444444444433321 11111 2
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCc-chhH
Q 002286 450 VLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN-KVTV 527 (942)
Q Consensus 450 ~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 527 (942)
.+..+-. .|...|+...+...+++........+ ...... +...+....+..+. .-|. ..-+
T Consensus 213 Fyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis---t~~~~h----~e~ilgsps~~l~~----------wlpkeqica 275 (629)
T KOG2300|consen 213 FYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS---TSSRGH----DEKILGSPSPILFE----------WLPKEQICA 275 (629)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC---CCCCCc----cccccCCCChHHHh----------hccHhhhHh
Confidence 2223333 34566887777777665433210000 000000 00000000000000 0011 1111
Q ss_pred HHHH--HHHHhhcCCHHHHHHHHHHHHHhC------CCcHH--------HHHHHHHHHHHcCChhHHHHHHHHHHhhc--
Q 002286 528 LFNL--ARLLEQIHDTVAASVLYRLILFKY------QDYVD--------AYLRLAAIAKARNNLQLSIELVNEALKVN-- 589 (942)
Q Consensus 528 ~~~l--a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-- 589 (942)
+..+ ..--.-.|-+++|.++-++++... |.... .+-.++.+-.-.|++.+|++.+..+....
T Consensus 276 LV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r 355 (629)
T KOG2300|consen 276 LVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTR 355 (629)
T ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 1111 111123466777887777776532 11112 22334445556899999998888777654
Q ss_pred -CC-------ChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHH--HhhhhHHHHHHHhhhhcChhHHHHHHHH
Q 002286 590 -GK-------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT--LSLGNWNYFAALRNEKRAPKLEATHLEK 659 (942)
Q Consensus 590 -p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (942)
|. .+.+...+|......+-++.|...|..+.+.....+..+. ..++.. |... ++-+.
T Consensus 356 ~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~ed 422 (629)
T KOG2300|consen 356 FPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDAED 422 (629)
T ss_pred CCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccHHH
Confidence 43 2346677888888889999999999999998766565443 345556 7766 43333
Q ss_pred HHHHHHHHHhcCCCCH----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhc
Q 002286 660 AKELYTRVIVQHTSNL----------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQG 728 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~----------~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~~g 728 (942)
-.+..+ .+.|.|. .+++..|.....++++.+|...+.+.++......+ .-....+.-+|++..-.|
T Consensus 423 ~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 423 LYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred HHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhc
Confidence 222222 3344421 23455677777899999999999999887621111 113445677899999999
Q ss_pred CHHHHHHHHHHHHhhhCCCCCHHHH----HHHHHHHHHccc--HHHHHHHH
Q 002286 729 NFALAMKMYQNCLRKFYYNTDAQIL----LYLARTHYEAEQ--WQDCKKSL 773 (942)
Q Consensus 729 ~~~~A~~~~~~al~~~~~~~~~~~~----~~l~~~~~~~g~--~~~A~~~~ 773 (942)
+..++.+...-++......+|..+. ..+-.++...|+ .+...+.+
T Consensus 500 n~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred chHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 9999999999888876666772222 233445555665 44444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=77.46 Aligned_cols=67 Identities=19% Similarity=0.496 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCC
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE-QWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 781 (942)
++.+|..+|.+++..|++++|+..|+++++. ++.++.+++.+|.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999998 6677999999999999999 79999999999999998
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-07 Score=93.98 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHh---hcCCCCcchHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (942)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 176 (942)
....|+.+|.+++ .++|....++..++.+++.. ....+|....++++..+|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5568999999999 99999999999999888766 24568899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHH-HHHhhccHHhHHHHH
Q 002286 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LAV-MDLQANEAAGIRKGM 254 (942)
Q Consensus 177 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~-~~~~~~~~~~~~~A~ 254 (942)
+++.|+..|++++.++|+. +.+++..|......|+.++|...++++++++|.-..+-.. +.. .|...+ .++|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 8889999999999999999999999999999986555332 222 455444 67787
Q ss_pred HHHHHHH
Q 002286 255 EKMQRAF 261 (942)
Q Consensus 255 ~~~~~~~ 261 (942)
..|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7775543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-07 Score=85.00 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=81.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhhHhhHHHHHHHcCCHH
Q 002286 140 AKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~la~~~~~~g~~~ 214 (942)
..|+...+...++.+++.+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. .+.+++.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677777777777777777776 4566777777777777777777777777766544 2345667777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 215 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+|+..++. +...+-.+.++..+|.++...|+ +++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 77777755 22333445566677777777777 77777777665
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=85.66 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.++...+...++.+....+..+....+.+.+|.+++..|++++|...|+.++...+++.....+.+.++.+++..|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555566666655555555556666777777777777777777777776332222234456667777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (942)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 402 (942)
|+..++.+ ...+..+.++..+|.++...|++++|+..|+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777553 223344556667777777777777777777665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-06 Score=81.74 Aligned_cols=192 Identities=19% Similarity=0.202 Sum_probs=124.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~ 201 (942)
.+..|+..|...+..|++++|+..|+.+....|.+ ..+.+.++.++++.++|+.|+...++.+.+.|+++ +.+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35788999999999999999999999999998865 57889999999999999999999999999999874 34455
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
..|.+++.. ++ ....|......|+..|+..+...|++.-+-.....+
T Consensus 113 lkgLs~~~~---------------i~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---- 159 (254)
T COG4105 113 LKGLSYFFQ---------------ID--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---- 159 (254)
T ss_pred HHHHHHhcc---------------CC--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----
Confidence 555552211 10 001122236677777788888888765332111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
..+...+ +.--..+|+.|...|.+-.|+..++.+++..+..+....++..+..+|..+|-.++|
T Consensus 160 -------~~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 160 -------VKLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred -------HHHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 0111111 122344566666666666666666666665555555555566666666666666665
Q ss_pred HHHHHH
Q 002286 362 LTNFEK 367 (942)
Q Consensus 362 ~~~~~~ 367 (942)
...-.-
T Consensus 224 ~~~~~v 229 (254)
T COG4105 224 KKTAKV 229 (254)
T ss_pred HHHHHH
Confidence 554333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=76.58 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777777777777777777777777777777777765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-06 Score=77.75 Aligned_cols=251 Identities=14% Similarity=0.056 Sum_probs=156.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 002286 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 392 (942)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 392 (942)
+-++..|+|..++..-.+... .+........+...|+..|.+...+......- .....+...++.....-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 344556666666665555432 22444445556667777776655444333221 12234445555555555555
Q ss_pred HHHHHHHHHHHHh-CcC-cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 393 EKAQELLRKAAKI-DPR-DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 393 ~~A~~~~~~~l~~-~p~-~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
+.-+..+...+.. ... +......-+.++ ..|++++|+........ .++...-..++.+..+.+-|..
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----------LEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444443322 222 223333444555 78888888877766322 3344444567777888888888
Q ss_pred HHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhh----cCCHHHHH
Q 002286 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAAS 545 (942)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 545 (942)
.++++.+. ++..++..+|..+.. .+...+|.
T Consensus 159 ~lk~mq~i---------------------------------------------ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 159 ELKKMQQI---------------------------------------------DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHHHHHcc---------------------------------------------chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 88887662 133444555555443 34677888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHH-HHhhccCC
Q 002286 546 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATD 624 (942)
Q Consensus 546 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~ 624 (942)
-+|++.-...|..+......+.+...+|++++|...++.++..++++|+++.++..+-...|...++..-+ .+....+|
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 88888888788888888888888889999999999999999999999998888888888888776655544 34444455
Q ss_pred C
Q 002286 625 G 625 (942)
Q Consensus 625 ~ 625 (942)
.
T Consensus 274 ~ 274 (299)
T KOG3081|consen 274 E 274 (299)
T ss_pred c
Confidence 5
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-07 Score=99.51 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=115.5
Q ss_pred CCCCcch--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHH
Q 002286 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRALQ 190 (942)
Q Consensus 124 ~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~~l~ 190 (942)
-|.++.+ ++.+|..++..++ ...|+.+|+++++.+|++..++..++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3555544 4667888877765 789999999999999999999998888776542 23455555666555
Q ss_pred h--CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 191 ~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
. +|.. +.++..+|......|++++|...+++++.++| +..++..+|.++...|+ +++|+..|++++.++|.++
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788888888899999999999999999999 58899999999999999 9999999999999999988
Q ss_pred H
Q 002286 269 M 269 (942)
Q Consensus 269 ~ 269 (942)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 4
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-07 Score=94.59 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=108.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c-CcHHHHHHHHH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYP--D----NCETLKALGHIYVQLGQIEKAQELLRKAAKID-----P-RDAQAFIDLGE 418 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p-~~~~~~~~la~ 418 (942)
.|...|++++|..+|.++....- + -...+...+.+|.+. ++++|+.+|++++.+. | .-...+..+|.
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444555555555554433210 0 122344445555444 7777777777777652 1 12556778899
Q ss_pred HH-hc-CCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhh
Q 002286 419 LL-IS-SDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495 (942)
Q Consensus 419 ~~-~~-~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 495 (942)
+| .. |+++.|+.+|+++...+...+.... ..++..+|.++...|+|++|+..|++..........
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l------------ 190 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL------------ 190 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc------------
Confidence 99 76 8999999999999999988664322 377889999999999999999999998874210000
Q ss_pred hhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc
Q 002286 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (942)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (942)
........++..+.++...|++..|...++.....+|..
T Consensus 191 ------------------------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 191 ------------------------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp ------------------------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred ------------------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 011122345566778888889988988888888888755
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-07 Score=88.12 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=81.5
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (942)
+.....++.+|..+...|++++|+.+|++++...+..+....+++.+|.++...|++++|+..+.+++...|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 44556788888888888888888888888886443334445678888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH--------------HHHHHHHHHHHHhCcCc
Q 002286 382 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 409 (942)
Q Consensus 382 la~~~~~~g~~--------------~~A~~~~~~~l~~~p~~ 409 (942)
+|.++...|+. .+|..++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888888773 44555555555555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00057 Score=73.26 Aligned_cols=425 Identities=16% Similarity=0.127 Sum_probs=213.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 353 (942)
.|..+...|+++.|+..|-.+. .......+......+.+|+..+..... .......|-.+++-|.
T Consensus 712 wg~hl~~~~q~daainhfiea~-----------~~~kaieaai~akew~kai~ildniqd----qk~~s~yy~~iadhya 776 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN-----------CLIKAIEAAIGAKEWKKAISILDNIQD----QKTASGYYGEIADHYA 776 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh-----------hHHHHHHHHhhhhhhhhhHhHHHHhhh----hccccccchHHHHHhc
Confidence 3556666677776666554432 122223344455667777776665542 1222233445778888
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH-hcCCHhHHHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
..|+|+.|.++|.++- ....-...|.+.|+++.|...-.+.. .|.. ...|+..+.-+ ..|++.+|...
T Consensus 777 n~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred cchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 8889988888887652 22334556778888888877766653 3333 33444455544 55555555444
Q ss_pred -------------HHH------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchh
Q 002286 432 -------------FKT------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492 (942)
Q Consensus 432 -------------~~~------a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 492 (942)
|.+ ++++..+.....-.+....+|.-+...|+...|...|-++-+-......
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnm--------- 917 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNM--------- 917 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHH---------
Confidence 332 2222222222223466677788888889998888888776441100000
Q ss_pred hhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002286 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 572 (942)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 572 (942)
+++..+.+..-...+ ...-..+.-..+.++.+.=--+.|..++.+. ..+..-.......
T Consensus 918 ---------yk~s~lw~dayriak----tegg~n~~k~v~flwaksiggdaavkllnk~--------gll~~~id~a~d~ 976 (1636)
T KOG3616|consen 918 ---------YKASELWEDAYRIAK----TEGGANAEKHVAFLWAKSIGGDAAVKLLNKH--------GLLEAAIDFAADN 976 (1636)
T ss_pred ---------hhhhhhHHHHHHHHh----ccccccHHHHHHHHHHHhhCcHHHHHHHHhh--------hhHHHHhhhhhcc
Confidence 000000000000000 0000000000011111100011222222110 0000111123345
Q ss_pred CChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhH
Q 002286 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 652 (942)
Q Consensus 573 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~ 652 (942)
+-++-|..+.+-+.+ ..-++++..++..+...|+++.|-+.|-.+++++.-+-. +++..-..-.....
T Consensus 977 ~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit----------wcqavpsrfd~e~i 1044 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT----------WCQAVPSRFDAEFI 1044 (1636)
T ss_pred cchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch----------hhhcccchhhHHHH
Confidence 555556555544433 345778888999999999999999999999987643211 22221000000001
Q ss_pred HHH-HHHHHHHHHH---------HHHhc-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 002286 653 EAT-HLEKAKELYT---------RVIVQ-HTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720 (942)
Q Consensus 653 ~~~-~~~~A~~~~~---------~~l~~-~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 720 (942)
+.| ..+.|...|- ++.+. +|+ -+..+.+-+.--.+.|++-+|..++-++.. |++-.+
T Consensus 1045 r~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrank----------p~i~l~- 1113 (1636)
T KOG3616|consen 1045 RAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANK----------PDIALN- 1113 (1636)
T ss_pred HcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCC----------CchHHH-
Confidence 113 5667776662 22222 222 234455666666677888888777655522 222211
Q ss_pred HHHHHHhcCHHHHHHHH---------------HH-HHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 721 AHVYFAQGNFALAMKMY---------------QN-CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 721 a~~~~~~g~~~~A~~~~---------------~~-al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
.+...+-+..|+... ++ ++++ ....+..+..-++-|...|+|..|...+-++-...
T Consensus 1114 --yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~--gargvd~fvaqak~weq~gd~rkav~~~lkinrds 1185 (1636)
T KOG3616|consen 1114 --YFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKK--GARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDS 1185 (1636)
T ss_pred --HHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHhcccHHHHHHHHhhhccCC
Confidence 123334444444332 22 2222 22336677788899999999999999887754443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-06 Score=78.56 Aligned_cols=161 Identities=13% Similarity=0.172 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHH
Q 002286 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640 (942)
Q Consensus 561 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~ 640 (942)
....-+.++...|++++|+..... -.+.++...-..++.++.+.+-|...++++.+... ..++..|+.. |.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide---d~tLtQLA~a-wv 180 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE---DATLTQLAQA-WV 180 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch---HHHHHHHHHH-HH
Confidence 344445556677777777766655 23445555556666677777777777777666542 2344445555 55
Q ss_pred HHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 002286 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720 (942)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 720 (942)
..+... +.+..|.-+|+..-...|..+...++.+.+...+|++++|..+++.+++..+ .+|+++.|+
T Consensus 181 ~la~gg--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nl 247 (299)
T KOG3081|consen 181 KLATGG--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPETLANL 247 (299)
T ss_pred HHhccc--------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHH
Confidence 543322 4566666677766666666666677777777777777777777777776665 566677777
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhh
Q 002286 721 AHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 721 a~~~~~~g~~~~A~~~~~~al~~ 743 (942)
..+-...|...++..-+-.-++.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666666666555554444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=100.51 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=120.0
Q ss_pred hccCChHHH--HHHHHHHHHcCC---HHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHH
Q 002286 35 AEQAPLDLW--LIIAREYFKQGK---VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEH 109 (942)
Q Consensus 35 ~~~~~~~~~--~~~a~~y~~~g~---~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~ 109 (942)
..+.++++| +..|..|+.++. ...|+.+|++++..+|+. ..++..++.+|........ ..+.+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---------a~a~A~la~~~~~~~~~~~---~~~~~ 399 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---------TYAQAEKALADIVRHSQQP---LDEKQ 399 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHHhcCC---ccHHH
Confidence 344555655 777888887766 889999999999998843 4466667777755543331 22345
Q ss_pred HHHHHHHHHHHhhc--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 110 FILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 110 ~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
...+.....+++.. +|.++.++..+|..+...|++++|...|++++.++| +..++..+|.++...|++++|+..|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777777776664 777888899999999999999999999999999999 588999999999999999999999999
Q ss_pred HHHhCCCCchh
Q 002286 188 ALQVHPSCPGA 198 (942)
Q Consensus 188 ~l~~~p~~~~~ 198 (942)
++.++|..+..
T Consensus 479 A~~L~P~~pt~ 489 (517)
T PRK10153 479 AFNLRPGENTL 489 (517)
T ss_pred HHhcCCCCchH
Confidence 99999998543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=88.40 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 002286 110 FILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
|..+...+...++.++.+ ...++..|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334555555554444443 4566778888888888888888888887776542 34777888888888888888888
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
|++++..+|.. ...+..+|.++...|
T Consensus 95 ~~~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 95 YFQALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 88888887777 555667777777333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-08 Score=82.42 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
.++|+.|+..|++++..+|. +...++.+|.+++..|++++|+.++++ ...+|.++...+.+|.+++..|+|++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35788999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 002286 185 YKRA 188 (942)
Q Consensus 185 ~~~~ 188 (942)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9874
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=94.01 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhh-hhhh-----HHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YADV-----RYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~ 114 (942)
...-..|..||+.|+|..|...|++++..-.... ++.+ ..-+..++..|+.+|++++... +|+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai 277 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAI 277 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHH
Confidence 3456788999999999999999999765321110 1110 1123344455555555444333 566
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHh
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQV 191 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A-~~~~~~~l~~ 191 (942)
...++++..+|+|+.++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+.+. .+.|.+++..
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666666666666666666666666666666666666666655555555555444444333 4555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-07 Score=93.17 Aligned_cols=216 Identities=18% Similarity=0.198 Sum_probs=151.3
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHhcCCHhHHH
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISSDTGAAL 429 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~~~A~ 429 (942)
.++++|...|.++ |.+|...|++++|...|.++.... ......+...+.++...++++|+
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai 94 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 3677777777766 556677788888888888776543 11245666777788555999999
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhh
Q 002286 430 DAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (942)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (942)
.+|++++.++...|.... ..++..+|.+|... |++++|+.+|++++.......
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~------------------------- 149 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG------------------------- 149 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------------------
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------------
Confidence 999999999887765433 47899999999999 999999999999998432100
Q ss_pred hhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCChhHHHH
Q 002286 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-------VDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
........+..+|.++...|++++|++.|+++....-++ ...++..+.+++..||+..|..
T Consensus 150 ------------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 150 ------------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ------------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 111235677889999999999999999999998754322 2345677788999999999999
Q ss_pred HHHHHHhhcCCChh-----HHHHhhhhhcc--ccchHHHHHHHHHhhcc
Q 002286 581 LVNEALKVNGKYPN-----ALSMLGDLELK--NDDWVKAKETFRAASDA 622 (942)
Q Consensus 581 ~~~~~l~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 622 (942)
.+++....+|.... +...+..++-. ...+..++..|..+..+
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 99999999886543 33333444322 23466777777765544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-07 Score=78.28 Aligned_cols=110 Identities=12% Similarity=0.195 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 752 (942)
.+..++.-|.-....|+|.+|++.|+.+....|.+.+ .+.+.+.+|.+|+..|++++|+..+++-++++|.+++ +.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4566788888999999999999999999999997754 4688999999999999999999999999999998888 889
Q ss_pred HHHHHHHHHHccc---------------HHHHHHHHHHHHHhCCCChh
Q 002286 753 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 753 ~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~ 785 (942)
++..|.+++.... ...|...|++++..+|++.-
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 9999999999876 78899999999999998854
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.8e-07 Score=85.52 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=86.1
Q ss_pred HHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC--
Q 002286 50 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE-- 127 (942)
Q Consensus 50 y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-- 127 (942)
+|-.+.+..+...+...+..... .....++..+|.++...|..+ +|+..|.+++.+.|+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSG-------EKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccchhhhhHhccCCch-------hHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchh
Confidence 34445566666667665543221 145677888888888888766 9999999999887653
Q ss_pred -cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 128 -PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (942)
Q Consensus 128 -~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g 176 (942)
+.++..+|.++...|++++|+..|++++..+|.....+..+|.++...|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999888443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00011 Score=74.95 Aligned_cols=276 Identities=13% Similarity=0.120 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 172 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~--~---~p----------~~~~~~~~~a~~~ 172 (942)
.|+.-++.+...-.++..+...++..+.+ +++.|.... ...++.... . .| .+....+..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 35577777777777766665555666544 555554422 222222111 1 11 2345678888899
Q ss_pred HhcCChHHHHHHHHHHHHhC----CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh------CCC--CH---------
Q 002286 173 FNRGRYSDSLEFYKRALQVH----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPE--NV--------- 231 (942)
Q Consensus 173 ~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~--~~--------- 231 (942)
+....+..|++........- ......+-+..-..+....+-++|+.++.-.-++ .|. +.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 99999999988776655432 1112223344444555556666666554332221 010 00
Q ss_pred ----------------HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 232 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 232 ----------------~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
.+.......++.... ..-+..-...+.....+.+.++...+..++..|++.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122222222 4455555555666667888999999999999999999999887643
Q ss_pred hc-CCC---CCc--hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------C---------CCCCchhhhhcHHHHHHH
Q 002286 296 AV-TNH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI------N---------KPHEFIFPYYGLGQVQLK 354 (942)
Q Consensus 296 ~~-~~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~---------~~~~~~~~~~~la~~~~~ 354 (942)
-. ... .|. ...+|.++|.++++.|.|.-+..+|.++++.. + .........++.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 11 111 121 23457899999999999999999999998511 0 112344568899999999
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
.|++-.|.++|.++...+-.+|..|..++.|...
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-06 Score=95.03 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (942)
Q Consensus 253 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (942)
..+.|++.+..+|+....|..........++.++|.+.+++++...+... ..-..|..+-.....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34556666667777777777777777777777777777777775442222 1223444444555555666666777777
Q ss_pred HHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--
Q 002286 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-- 408 (942)
Q Consensus 331 a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-- 408 (942)
+.+. -+....+..|..+|...+.+++|.++|+.+++.......+|..+|..+++.++-+.|...+.++++.-|.
T Consensus 1523 Acqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 7752 2334456677777888888888888888888777777778888888888887778888888888877776
Q ss_pred cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+.......+.+. ..||.+.+..+|+..+...|+ ..++|+-....-.+.|+.+.+...|++++..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 566666667766 778888887777777776655 3577777777777778888888888888774
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-07 Score=78.18 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+++.+|.+++..|++++|+..+++++...|.. ..++..+|.++...|++++|...|++++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46677778888888888888888888887777 56677788888888888888888888888888877778888888888
Q ss_pred hccHHhHHHHHHHHHHHHHhCC
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYP 265 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p 265 (942)
.|+ ++.|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 777 7788888877777665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.7e-07 Score=90.90 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRD----N-----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-----------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.-..|..+++.|+|..|...|++++..-+. + ..+++.+|.|+.+.++|..|+..+.++|..+|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345788999999999999999998765321 1 2456777777777777777777777777777777
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.-.++..|.++..+|+++.|+..|+++++++|+|..+...+..+.....+ ...+....|.+++..-
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKL 356 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 55567777777777777777777777777777777776666666555443 1233355666665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-08 Score=73.36 Aligned_cols=64 Identities=31% Similarity=0.536 Sum_probs=53.9
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 410 (942)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4678888888888888888888888888888888888888888888888888888888888764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=81.65 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=97.5
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
.+.++.....+..|.-+...|++++|..+|+-+.-.+| .+++.|+.||-|+..+|+|++|+..|-.+... ...
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~ 103 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-----YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKN 103 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccC
Confidence 34455667788999999999999999999999999887 78999999999999999999999999999987 556
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 749 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
||...++.|.|+...|+...|+..|..++. .|.+..++
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 777899999999999999999999999998 46554433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.4e-07 Score=76.72 Aligned_cols=86 Identities=23% Similarity=0.345 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~ 201 (942)
.+..++..|...+..|+|++|++.|+.+....|.. ..+.+.++.+++..|+|.+|+..+++.++++|.++ +.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678899999999999999999999999988865 57889999999999999999999999999999873 56678
Q ss_pred hHHHHHHHcCC
Q 002286 202 GIGLCRYKLGQ 212 (942)
Q Consensus 202 ~la~~~~~~g~ 212 (942)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-08 Score=97.80 Aligned_cols=242 Identities=13% Similarity=0.055 Sum_probs=155.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+-..|.-|+++|+|++|+.||.+.+..+|.|+..+...|..|++.+.|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 44578888888888888888888888888888888888888888888888888888888887766 56677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|...+|...++.++++.|++.+..-.++.+..-. ++ +-+.+.-|....+....+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~-------E~----~I~~KsT~G~~~A~Q~~~--------------- 232 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLR-------ER----KIATKSTPGFTPARQGMI--------------- 232 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH-------hh----hHHhhcCCCCCccccchh---------------
Confidence 8888888888888888888666544443332111 00 001111122111111110
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
+++ ..-.-|..+...|.++.++..+...+... ..+...... +..+.+..+++.++.-.-+.+.
T Consensus 233 --Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 233 --QIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred --hhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 000 01122445566667777777666555421 222222222 5667777888888888877777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
.+|.........+..-.-.|...++...++.++.+.|.+......+
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~ 341 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETE 341 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhh
Confidence 6666555555555555566777788888888888888765444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.9e-07 Score=85.99 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHH
Q 002286 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (942)
Q Consensus 271 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 350 (942)
.+..|.-++..|+|..|...|...++..+..+..+.++|+||.+++.+|+++.|...|..+.+.++.+|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 34444555555666666666666666655666666777777777777777777777777777766666666666777777
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (942)
+...+|+.++|...|+++++.+|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777777777665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00016 Score=71.89 Aligned_cols=296 Identities=16% Similarity=0.113 Sum_probs=193.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh-CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
.|.+....|+-..|.+.-.+.-++ ..+..+-+++.-+..-.-.|+++.|.+-|+-++. +|..- +..|-.+|+....
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr 166 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQR 166 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHh
Confidence 344555566666666666665533 2333345555566666667777777777776654 33211 2222233333222
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHH-hcCCHH
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSYH-SKGDYE 322 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~la~~~~-~~g~~~ 322 (942)
.+..+.|..+.+++...-|.-+.+....-...+..|+++.|+++.+......-..+. ...+...-+.... ...+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 233777777777777777777777777777777777777777777766543222222 1122222222211 223577
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 002286 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA-QELLRK 401 (942)
Q Consensus 323 ~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 401 (942)
.|...-.++.+ ..|+.+.+-..-+..++..|+..++-.+++.+.+..|. +++. +..++.+.|+.... ++-..+
T Consensus 247 ~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 247 SARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCCcHHHHHHHHHH
Confidence 78888878877 67888888888999999999999999999999998875 3322 22334455654332 233344
Q ss_pred HHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcc
Q 002286 402 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDG 478 (942)
Q Consensus 402 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~ 478 (942)
+..+.|++.......+..- ..|++..|...-+.+....|. ..++..++.+-... |+-.++..++.+++...
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4556899999999999988 999999999888888777654 46777778876655 99999999999998753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00018 Score=73.08 Aligned_cols=203 Identities=30% Similarity=0.379 Sum_probs=108.3
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN- 276 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~- 276 (942)
....+..+...+.+..+...+...+. ..+.....+...+......++ +..++..+..+....+...........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK---YEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 33444444444444444444444443 334444444444444444444 444444444444444433222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhhhcHHHHHHHc
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKL 355 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~ 355 (942)
++...|+++.+...+.+++...+............+..+...++++.|+..+..++.. .+. ....+..++..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHc
Confidence 4444444444444444443211000123344444444566667777777777777652 233 455566677777777
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 408 (942)
+++..|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777777777777765566666666666556677777777777777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-05 Score=76.15 Aligned_cols=219 Identities=25% Similarity=0.289 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
+.+..+...+.......+. ........+..+...+.+..+...+...+. ..+.....+...+......+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3455777888888877776 367888899999999999999999999987 678888899999999999999999999
Q ss_pred HHHHHHHhCCCCchhhHhhHHH-HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhccHHhHHHHHHHHHH
Q 002286 184 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 259 (942)
.+..++...+.. .......+. ++...|+++.|...|.+++..+| .........+..+...++ +..++..+.+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHH
Confidence 999999987776 344455555 89999999999999999988776 344555566666666666 8888888888
Q ss_pred HHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 260 AFEIYPY-CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 260 ~~~~~p~-~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
++...+. ....+..++..+...+++..+...+..++...+. ....+...+..+...|.++.+...+.+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887 4656666666666655555555555555543321 223333444444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=73.09 Aligned_cols=98 Identities=27% Similarity=0.318 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhhHhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 202 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~ 202 (942)
|.+++.+|.++-..|+.++|+..|++++...+.. ..+++.+|..+...|++++|+..+++.+...|++ ...+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3578899999999999999999999999876544 5688999999999999999999999999988872 1566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~ 225 (942)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999888765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0015 Score=66.78 Aligned_cols=440 Identities=14% Similarity=0.034 Sum_probs=226.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCc-----chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 002286 105 EKEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (942)
Q Consensus 105 ~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~ 179 (942)
.+++++.+|...|.++.....+.+ +++.++..-.+-.++.+.-...+...-+..|..+...+..|...++.|+|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 456677799999999876654443 344455566667788888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------------chh--hHhhHHHHHHHcCCHHHHHHHHHHHHhh-CC----CCHHHHHH----
Q 002286 180 DSLEFYKRALQVHPSC------------PGA--IRLGIGLCRYKLGQLGKARQAFQRALQL-DP----ENVEALVA---- 236 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~------------~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~-~p----~~~~~~~~---- 236 (942)
+|+..+..-...-... .++ .-...+.|+...|.+.+++..+.+.+.. -| -+.+.+..
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 9999887665542111 011 1134689999999999999999998764 22 24444443
Q ss_pred HHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcC-CHHH---HHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-MALNYLANHFFFTG-QHFL---VEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 237 l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g-~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
+|..|+-.- .++. ...+.|+.- .+.+.+-.+..... -|.+ ...++..+....-..|..
T Consensus 177 lsrSYfLEl-----~e~~-----s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e------- 239 (549)
T PF07079_consen 177 LSRSYFLEL-----KESM-----SSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE------- 239 (549)
T ss_pred HhHHHHHHH-----HHhc-----ccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh-------
Confidence 333332210 0000 001112111 11111111111110 0111 111222111110000100
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC-----CCcHHHHHHHHHHH
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----PDNCETLKALGHIY 386 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~ 386 (942)
..--+-+++..+++.. .+|....+.-.+-.-... +.+++...++.+.... ..-...+..+-...
T Consensus 240 -----~l~~~mq~l~~We~~y----v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 240 -----RLPPLMQILENWENFY----VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred -----hccHHHHHHHHHHhhc----cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0001111222221111 223332222222222222 4444444444433221 11123333444445
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH------HHH--hcCCHhHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 002286 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLG------ELL--ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGV 456 (942)
Q Consensus 387 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la------~~~--~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~l~~ 456 (942)
.+.++...|..++.-...++|......-.+. .+. ...++.+-..++.-...+. ..+.+ .-...+...+.
T Consensus 309 Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHH
Confidence 6678888888888888788887652211111 111 1111222122221111111 11110 01234555677
Q ss_pred HHHHcCC-HHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHH
Q 002286 457 IHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (942)
Q Consensus 457 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 535 (942)
-+++.|. -++|+..++.++.-. +.+....... ..+
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft-------------------------------------------~yD~ec~n~v-~~f 423 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT-------------------------------------------NYDIECENIV-FLF 423 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc-------------------------------------------cccHHHHHHH-HHH
Confidence 7888887 788899998888732 2222111110 000
Q ss_pred hhcCCHHHHH--HHHHH------HHH---hCC---CcHHHHHHHH--HHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh
Q 002286 536 EQIHDTVAAS--VLYRL------ILF---KYQ---DYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (942)
Q Consensus 536 ~~~g~~~~A~--~~~~~------~l~---~~p---~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 599 (942)
.+ ..+..|. ..+.+ .+. +.| .+.+.-..++ ..++..|++.++.-+-.-..++.| ++.++..+
T Consensus 424 vK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLl 501 (549)
T PF07079_consen 424 VK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLL 501 (549)
T ss_pred HH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 00 0111111 01111 111 122 2234444444 447789999999999999999999 99999999
Q ss_pred hhhhccccchHHHHHHHHHh
Q 002286 600 GDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~ 619 (942)
|.++....+|.+|..++...
T Consensus 502 Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 502 GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999999853
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00037 Score=69.38 Aligned_cols=263 Identities=19% Similarity=0.140 Sum_probs=131.4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
+-.++.-+...+..|+++.|.+-|+.++. +|.- ...+-++-.-..+.|..+.|..+-.++-...|.- +..+...-..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHH
Confidence 44455556667777777777777776653 2221 1122222222345577777777777777777776 3334444444
Q ss_pred HHHcCCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHH-HhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 207 RYKLGQLGKARQAFQRALQL---DPENVE---ALVALAVMD-LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~---~p~~~~---~~~~l~~~~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
....|+++.|++..+..... .++..+ +-..-+... .-..+ ...|......+.++.|+...+-..-+..++
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad---p~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD---PASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 55677777777776654432 222111 111111111 11112 555666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChH
Q 002286 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (942)
..|+..++-++++.+-+..+++ .++..|....--+.++.-++++.......|++....+..+..-+.-|++.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 6666666666666665543221 12223333222233333444333322233445555555555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 002286 360 SALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 404 (942)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~ 404 (942)
.|...-+.+....|.. .++..++.+-... |+-.++...+-++++
T Consensus 347 ~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555555555544432 2333344443332 555555555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=89.16 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHH
Q 002286 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (942)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (942)
..+...++++.|+..|++..+.+|+ +...+|.++...++-.+|+.++.+++..+|.+ ...+...+..+...++++.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHH
Confidence 3444456777777777777666653 44556666666777777777777777777766 5666667777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 216 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
|+...++++...|++...|..|+.+|...|+ ++.|+..+..+
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence 7777777777777777777777777777777 77777666644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0022 Score=68.40 Aligned_cols=186 Identities=9% Similarity=-0.058 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..|..........|+++...-.|++++-- .......|
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------------------------------------cA~Y~efW 334 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-------------------------------------------CALYDEFW 334 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------------------------------------HhhhHHHH
Confidence 55666666677888888888888888762 23467788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcccc
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 607 (942)
...++.....|+.+-|...+..+.+.+ |..+...+.-+.+....|++..|...++......|+...+-........+.|
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 888888888888888888777777754 6667777777777888889999999999988888888887777777777888
Q ss_pred chHHHHH---HHHHhhccCCCCch--hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 608 DWVKAKE---TFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 608 ~~~~A~~---~~~~~~~~~~~~~~--~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
+.+.+.. .+.....-...... ..++......|.-. ++.+.|...+.+++...|.+...+..+.
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 8777773 33322221111111 11111111111222 7778888888888888888877776666
Q ss_pred HHHHhcC
Q 002286 683 VVLAEKG 689 (942)
Q Consensus 683 ~~~~~~g 689 (942)
.+....+
T Consensus 483 ~~~~~~~ 489 (577)
T KOG1258|consen 483 RFELIQP 489 (577)
T ss_pred HHHHhCC
Confidence 5555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0026 Score=67.98 Aligned_cols=392 Identities=14% Similarity=0.074 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh-HHHHHHHcCCHHHHHHHHHHH
Q 002286 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRA 223 (942)
Q Consensus 145 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a 223 (942)
+.+...|...+...|-....|...|..-++.|..+.+..+|++++.--|-+ ...|.. ++.+-...|+.+.-...|++|
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555666666666677666677777777777777777777777777766655 333332 333333456666666677776
Q ss_pred HhhCCCC---HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHH
Q 002286 224 LQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG------QHFLVEQLTETA 294 (942)
Q Consensus 224 l~~~p~~---~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g------~~~~a~~~~~~~ 294 (942)
......+ ...|-........+++ ...-...|++.++.--.....++..=.-+.... ..+++..+-...
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 6654432 2233333333333333 555555555555432211111111100000000 011111110000
Q ss_pred HhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhhhc-------HHHHHHHcCChHHHHHHHH
Q 002286 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYG-------LGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 295 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~ 366 (942)
... ......+...+ .....+..... .+........ .-.++.......+.+..++
T Consensus 218 ~~~---------------~~~~~~~~~~e---~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE 279 (577)
T KOG1258|consen 218 AER---------------SKITHSQEPLE---ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE 279 (577)
T ss_pred Hhh---------------hhcccccChhH---HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence 000 00000001111 11111110000 0000000000 0112222233334444444
Q ss_pred HHHHh-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 002286 367 KVLEI-----YP---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 437 (942)
Q Consensus 367 ~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (942)
..++. .| .....|......-...|+++...-.|++++--.......|...+..+ ..|+.+-|-..+..+.+
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 44432 12 23345566666666777777777777777766666667777777777 66777776666666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCC
Q 002286 438 LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 517 (942)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (942)
+..+. .+.+...-+.+--..|++..|..+++.....
T Consensus 360 i~~k~----~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---------------------------------------- 395 (577)
T KOG1258|consen 360 IHVKK----TPIIHLLEARFEESNGNFDDAKVILQRIESE---------------------------------------- 395 (577)
T ss_pred hcCCC----CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh----------------------------------------
Confidence 54332 3445555556666667777777777776652
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCChhHHHHHHHHHHhhcC
Q 002286 518 VELPWNKVTVLFNLARLLEQIHDTVAASV---LYRLILFKYQDY---VDAYLRLAAI-AKARNNLQLSIELVNEALKVNG 590 (942)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~l~~~p~~---~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p 590 (942)
. |....+-...+......|+.+.+.. ++.....-..++ ...+...+.. +.-.++.+.|...+.++....|
T Consensus 396 --~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 396 --Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred --C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 2 4455555555556666666666663 222222211111 2233333333 3345677777777777777777
Q ss_pred CChhHHHHhhhhhcc
Q 002286 591 KYPNALSMLGDLELK 605 (942)
Q Consensus 591 ~~~~~~~~l~~~~~~ 605 (942)
.+...+..+..+...
T Consensus 473 ~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 473 DCKVLYLELIRFELI 487 (577)
T ss_pred ccHHHHHHHHHHHHh
Confidence 777666666555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-07 Score=70.59 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
..|+|++|+..|++++..+|++ ..+++.+|.|+...|++++|...+++++..+|+++.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444444444444444444444 4444444444444444444444444444444444443333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-06 Score=72.17 Aligned_cols=98 Identities=27% Similarity=0.265 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (942)
.+.+.+|.++...|+.++|+.+|++++......+....+++.+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456666777777777777777777776633333444556667777777777777777777777776666 55666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l 403 (942)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777776665554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0048 Score=70.91 Aligned_cols=409 Identities=18% Similarity=0.144 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCchhhhhcHHHHHH-HcCChHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcCCHH
Q 002286 322 EKAGLYYMASVKEINKP-HEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYP--DNC----ETLKALGHIYVQLGQIE 393 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~ 393 (942)
..|+.+++.+++..+.+ ...+.+++.+|.+++ ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44566666666422221 223345667777776 67778888888888766542 222 23456677777777666
Q ss_pred HHHHHHHHHHHhCcC---c-HHHHHHH--HHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHH
Q 002286 394 KAQELLRKAAKIDPR---D-AQAFIDL--GELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFE 465 (942)
Q Consensus 394 ~A~~~~~~~l~~~p~---~-~~~~~~l--a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 465 (942)
|...+++.++.... . ....+.+ ..+. ..+|+..|+..++.........+++.- ..+....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887765433 1 1112222 2222 336888888888888876653322111 123333466677778888
Q ss_pred HHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHH--HHhhcCCHHH
Q 002286 466 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVA 543 (942)
Q Consensus 466 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 543 (942)
++++.++.+....... .+++ . ..+....++..+-. +....|++..
T Consensus 197 d~~~~l~~~~~~~~~~-q~~~------------------------------~--~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 197 DVLELLQRAIAQARSL-QLDP------------------------------S--VHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred hHHHHHHHHHHHHhhc-ccCC------------------------------C--CCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888886532100 0000 0 11223334444433 3456677666
Q ss_pred HHHHHHHHHH------hCC---C---------------------c------------HHHHHHHHHHHHHcCChhHHHHH
Q 002286 544 ASVLYRLILF------KYQ---D---------------------Y------------VDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 544 A~~~~~~~l~------~~p---~---------------------~------------~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
+...++++-. ..| . . .-+|..-|......+..+.|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 6655554322 111 0 0 11233334455566767688888
Q ss_pred HHHHHhhc-------CCCh-------------------hHHHHhhhhhccccchHHHHHHHHHhhccC---CC-----Cc
Q 002286 582 VNEALKVN-------GKYP-------------------NALSMLGDLELKNDDWVKAKETFRAASDAT---DG-----KD 627 (942)
Q Consensus 582 ~~~~l~~~-------p~~~-------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-----~~ 627 (942)
+.++++.- |..+ .+....+++.+-.|++..|...+..+.+.. |. ..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 403 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY 403 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh
Confidence 77776542 1110 134456777778899999999988777642 11 23
Q ss_pred hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH--------HHHhcCCCC---HHHHHHHHHHHHhcCCchH---
Q 002286 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTSN---LYAANGAGVVLAEKGQFDV--- 693 (942)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~p~~---~~a~~~la~~~~~~g~~~~--- 693 (942)
+..++..|.. +... |+.+.|...|. .+....+.+ +.+..++..++...+.-..
T Consensus 404 ~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 404 PLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 5566666766 6666 99999999998 444555553 3455677777776665444
Q ss_pred -HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH-------HhcCHHHHHHHHHHHHhhh-CCCCC----HHHHHHHHHHH
Q 002286 694 -SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF-------AQGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTH 760 (942)
Q Consensus 694 -A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~l~~~~ 760 (942)
...++.++..... +.+..++..++++. ..-...++...+..+++.. ....+ .-++..++..+
T Consensus 471 ~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 471 ELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred HHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4555554433322 12222333332221 1123347888888888876 22222 44566777777
Q ss_pred HHcccHHHHHHHHHHHHHhCCCC
Q 002286 761 YEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 761 ~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
+ .|+..+..+....+.+.....
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhh
Confidence 7 888888777776677765543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.6e-07 Score=68.99 Aligned_cols=67 Identities=36% Similarity=0.503 Sum_probs=59.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 418 (942)
++..|++++|+..|++++..+|++..++..+|.+|...|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578899999999999999999999999999999999999999999999999999998887777665
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0027 Score=64.60 Aligned_cols=420 Identities=13% Similarity=0.105 Sum_probs=205.3
Q ss_pred EEEeCCCCCCChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 002286 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYT 94 (942)
Q Consensus 15 ~~~~~~~lp~~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~ 94 (942)
|.---|.+|.|--.|.+-++..|.+...|+++...|-.+|.+++-.+++++...+.| +++ -+|...
T Consensus 17 vae~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~------------~aw~ly 82 (660)
T COG5107 17 VAEPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IME------------HAWRLY 82 (660)
T ss_pred ccCcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--ccc------------HHHHHH
Confidence 333568999999999999999999999999999999999999999999999987654 221 244444
Q ss_pred HcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-----C-HHHHHHHHHHHHH---hCCCCHHHH
Q 002286 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-----E-VEQASSAFKIVLE---ADRDNVPAL 165 (942)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-----~-~~~A~~~~~~~l~---~~p~~~~~~ 165 (942)
..|... .++|..-..+|.+++...- +.+.|...-..-.+.+ . -..-.+.|+-++. .+|.....|
T Consensus 83 ~s~ELA------~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W 155 (660)
T COG5107 83 MSGELA------RKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYW 155 (660)
T ss_pred hcchhh------hhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchH
Confidence 455544 4456667777777765432 3444443222111111 0 1111223333333 466666666
Q ss_pred HHHHHHHH---------hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH---------HHHcC----CHHHHHHHHHHH
Q 002286 166 LGQACVEF---------NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC---------RYKLG----QLGKARQAFQRA 223 (942)
Q Consensus 166 ~~~a~~~~---------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~---------~~~~g----~~~~A~~~~~~a 223 (942)
...+..+. .+.+.+.-...|.+++..--.+....|...-.. ---.| -|..|...|+..
T Consensus 156 ~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~ 235 (660)
T COG5107 156 DEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEI 235 (660)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 55554432 233455566677777764333322222211110 00011 244566666655
Q ss_pred Hhh-------CCCCHHH-----------HHHHHHHHHhhccH---HhHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 224 LQL-------DPENVEA-----------LVALAVMDLQANEA---AGIRK-GMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 224 l~~-------~p~~~~~-----------~~~l~~~~~~~~~~---~~~~~-A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
..+ +|.+... |.+........+-. +-..+ ---.+++++...|-.+.+|+.....+...
T Consensus 236 ~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~i 315 (660)
T COG5107 236 QNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGI 315 (660)
T ss_pred HHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 443 2221111 22222221111100 00111 22244555555666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH---cCCh
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---LGDF 358 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~---~g~~ 358 (942)
++-+.|.......+... +...+.++..|...++-+....+|++..+.+.. .+..+..-.. .|++
T Consensus 316 sd~q~al~tv~rg~~~s------psL~~~lse~yel~nd~e~v~~~fdk~~q~L~r-------~ys~~~s~~~s~~D~N~ 382 (660)
T COG5107 316 SDKQKALKTVERGIEMS------PSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKR-------KYSMGESESASKVDNNF 382 (660)
T ss_pred cHHHHHHHHHHhcccCC------CchheeHHHHHhhcccHHHHhhhHHHHHHHHHH-------HHhhhhhhhhccccCCc
Confidence 66666666665554322 224455555555555555555555554431100 0000000000 1122
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH--HHHHHHhcCCHhHHHHHHHHHH
Q 002286 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI--DLGELLISSDTGAALDAFKTAR 436 (942)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~la~~~~~~~~~~A~~~~~~a~ 436 (942)
+..-+.+-+-. ....-++..+...-.+..-.+.|..+|.++-+..-....++. .+...+..|++..|..+|+-.+
T Consensus 383 e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl 459 (660)
T COG5107 383 EYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGL 459 (660)
T ss_pred cccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHH
Confidence 11111111110 111223333333333444455666666665543312222222 2222336666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
..+++ .+...+..-..+...++-+.|...|++++.
T Consensus 460 ~~f~d-----~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 460 LKFPD-----STLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HhCCC-----chHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 55544 222333333444556666666666666654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-07 Score=88.86 Aligned_cols=226 Identities=9% Similarity=-0.060 Sum_probs=155.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHH
Q 002286 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (942)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (942)
...|.-|+++|+|++|+.+|.+++. ..|.++..+.+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia-------------------------------------------~~P~NpV~~~NR 137 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA-------------------------------------------VYPHNPVYHINR 137 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc-------------------------------------------cCCCCccchhhH
Confidence 4458899999999999999999998 678899999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccc---
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD--- 608 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~--- 608 (942)
|.+|.+...+..|..-...++.++..+..+|.+.+..-..+|+..+|.+.++.++.+.|++.+..-.++.+-.-...
T Consensus 138 A~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 138 ALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876665554221000
Q ss_pred ------hHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 609 ------WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 609 ------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
+..|..--.+++.. -.-|+. ++.. |.++.++..|..-+..+.++...-.+ +
T Consensus 218 ~KsT~G~~~A~Q~~~Q~l~~---------K~~G~~-Fsk~------------~~~~~~i~~~~~~~A~~~~~~~L~~~-~ 274 (536)
T KOG4648|consen 218 TKSTPGFTPARQGMIQILPI---------KKPGYK-FSKK------------AMRSVPVVDVVSPRATIDDSNQLRIS-D 274 (536)
T ss_pred hhcCCCCCccccchhhhccc---------cCcchh-hhhh------------hccccceeEeeccccccCccccCccc-H
Confidence 11111111111111 112444 5555 77788887776655544333222222 4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
..+.+.-+++.|+.-..+.....| .........|.+-.-.|...+|...++.++...|...
T Consensus 275 ~~~~KI~~~~~~~~~~~~~~~~~~-----s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 275 EDIDKIFNSNCGIIEEVKKTNPKP-----TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred HHHHHHhhcchhHHHHHHhcCCCC-----CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 455555666676655555544333 1112223334444455677778888888887755443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=68.33 Aligned_cols=63 Identities=29% Similarity=0.567 Sum_probs=30.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
.++...++|++|+.++++++..+|++ +..+...|.++..+|++.+|...|+++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 34444445555555555555555444 3444445555555555555555555555555544443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.4e-06 Score=86.10 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=88.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHh
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 249 (942)
..+...++++.|+.++++..+.+|+. ...++.++...++..+|+..+.+++...|.+...+...+..++..++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--- 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--- 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Confidence 34444567777887777777776553 44577777777777778888888877777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~ 294 (942)
++.|+...+++....|.+...|..|+.+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777888888888888887778888888888888888777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0086 Score=68.87 Aligned_cols=467 Identities=15% Similarity=0.098 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHHHhcCCH
Q 002286 250 IRKGMEKMQRAFEIYPYCA----MALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~-~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (942)
...|+.+++-+++..+-.| .+...+|.+++ ...+++.|+..+++++.....+. ....+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4455666665554222222 35555666665 56667777777777665443311 1234455667777777776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh-hhcH--HHHHHHcCChHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 002286 322 EKAGLYYMASVKEINKPHEFIFP-YYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (942)
Q Consensus 322 ~~A~~~~~~a~~~~~~~~~~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (942)
. |...+++.++.....+..... .+.+ .......+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 888888887754432222222 1111 233333378888888888877654 23333 223345556666777
Q ss_pred HHHHHHHHHHHHhC----------cCcHHHHHHHHHHH---hcCCHhHHHHHHHHHHHHHHHcCCCC-------------
Q 002286 393 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 446 (942)
Q Consensus 393 ~~A~~~~~~~l~~~----------p~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 446 (942)
+++++.++.+.... +....++..+-.+. ..|++..+...+++.-..........
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777777664321 12234444444433 66776666666555544433321110
Q ss_pred ------------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 447 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 447 ------------~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
+ .-++..-|......|..+.|.+++.+++..-....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~-------------------- 335 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK-------------------- 335 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------------------
Confidence 0 01222234455556666677777777776321000
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
.......+..... ...-..++..+. ....+..+.+.+-.+++..|...+
T Consensus 336 ------------~~~~~~~~~sl~~-------------~~~~~~~~~~l~------~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 336 ------------IKSPSAPSESLSE-------------ASERIQWLRYLQ------CYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred ------------ccCCCCCCcCHHH-------------HHHhHHHHHHHH------HHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0000000000000 000011111110 234555666777788888888887
Q ss_pred HHHHhhc---CC------ChhHHHHhhhhhccccchHHHHHHHH--------HhhccCCCCchhHHHhhhhHHHHHHHhh
Q 002286 583 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 645 (942)
Q Consensus 583 ~~~l~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~y~~~~~~ 645 (942)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+ +..|. +.-.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il-a~LNl-~~I~~-~ 461 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL-AALNL-AIILQ-Y 461 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH-HHHHH-HHHhH-h
Confidence 7766543 22 35678888888888899999999997 44444444444432 22232 22221 1
Q ss_pred hhcChhHHHHHHH--HHHHHHHHH---HhcCCC-CHHH-HHHHHHHHH--hcCCchHHHHHHHHHHHHh-cCCCCCC-ch
Q 002286 646 EKRAPKLEATHLE--KAKELYTRV---IVQHTS-NLYA-ANGAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MP 714 (942)
Q Consensus 646 ~~~~~~~~~~~~~--~A~~~~~~~---l~~~p~-~~~a-~~~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~ 714 (942)
+.. .... ++...++.. ....|+ +... +..+..++. ..-...++...+.+.++.. ....... ..
T Consensus 462 ~~~------~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~ 535 (608)
T PF10345_consen 462 ESS------RDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLA 535 (608)
T ss_pred hcc------cchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHH
Confidence 110 0111 133333322 222222 1222 222222222 2223457777777776655 2111111 23
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHH-----HHHHHHHHHcccHHHHHHHHHHHHH
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQIL-----LYLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
-++.-+++.++ .|+..+.......+.......+| ...+ ..+...+...|+.++|.....+.-.
T Consensus 536 ~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 536 ILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 34556677777 78888888887777765544433 2223 2445567778999999887766543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-05 Score=68.20 Aligned_cols=134 Identities=18% Similarity=0.177 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-DRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+..+.+|.+.+.. .|. ....+.+|..+...|++.+|...|.+++.- ..+++..++++|...+..+++..|...+
T Consensus 73 ~R~~Rea~~~~~~----ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 73 ERHLREATEELAI----APT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hHHHHHHHHHHhh----chh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3344455555444 343 446788999999999999999999999863 5578899999999999999999999999
Q ss_pred HHHHHhCCCC-chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 186 KRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 186 ~~~l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
+.+.+.+|.. .++..+.+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 9999998865 4667888999999999999999999999999886 6777788888888886
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.7e-06 Score=73.81 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
.-|.-++..|+|.+|..-|..++...|..+ ..+...|.+.++++.++.|+..+.++++++|.. ..+....+.+|
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeay 178 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAY 178 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHH
Confidence 345555555555555555555555555432 234444555555555555555555555555555 33344445555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
.++..+++|+..|.++++.+|....
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHH
Confidence 5555555555555555555554433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-06 Score=66.48 Aligned_cols=70 Identities=33% Similarity=0.416 Sum_probs=61.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
|..++...+++++|+.+++.++..+|+++..+..+|.++...|++.+|...++++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999998887765544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00038 Score=65.41 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHH
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD----P--ENVEALVAL 237 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~l 237 (942)
+.+.++.++.-.|.|.-.+..+.++++.+|...+.....+|.+-.+.|+.+.|..+|+++-+.. . .+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556666777777777777777777777755546666677777777777777777777443321 1 233344555
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL 311 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 311 (942)
+.++...++ +..|...+.+++..+|.++.+.+..|.+....|+..+|++..+.++...+.........+++
T Consensus 259 a~i~lg~nn---~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNN---FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccc---hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence 566666666 77777777777777777777777777777777777777777777666554443333333333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.8e-05 Score=69.21 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhc-CCChhHHHHhhhhhccccchHHHHHHHHHhhccCCC-----CchhHHHh
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDSYATLS 633 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~ 633 (942)
...+.++.++.-.|.|.-....+.+.++.+ |..|.....+|.+.++.|+.+.|..+|+.+-+.... ....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 344455555556666666666666666665 455556666666666666666666666644321111 12223334
Q ss_pred hhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 002286 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (942)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (942)
.+.+ |... +++..|...|.+++..||.++.+.++.|.++.-.|+...|+..++.+....|+... +
T Consensus 258 ~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l--~ 322 (366)
T KOG2796|consen 258 SAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL--H 322 (366)
T ss_pred hhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch--h
Confidence 4445 5555 88999999999999999999999999999999999999999999999998885422 3
Q ss_pred hhHHHHHHH
Q 002286 714 PDVWINLAH 722 (942)
Q Consensus 714 ~~~~~~la~ 722 (942)
..+.+|+-.
T Consensus 323 es~~~nL~t 331 (366)
T KOG2796|consen 323 ESVLFNLTT 331 (366)
T ss_pred hhHHHHHHH
Confidence 345555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.4e-06 Score=73.51 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
+-.-|..+|+.|+|.+|..-|..++...|.. +...|.-++...|.+.+++++.+ .|+..+.+++.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~----~~e~rsIly~Nraaa~iKl~k~e-----------~aI~dcsKaie 162 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPST----STEERSILYSNRAAALIKLRKWE-----------SAIEDCSKAIE 162 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccc----cHHHHHHHHhhhHHHHHHhhhHH-----------HHHHHHHhhHh
Confidence 3444666777777777777777777665532 12244445555566666666555 66666777777
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 168 (942)
++|.+..++..+|.+|-+..+|++|+..|.+++..+|..-.+.-..
T Consensus 163 l~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 163 LNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7776666666667777666667777777777766666655444333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-06 Score=67.48 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=56.3
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC----C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----D-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
+...++.++|.+|..+|++++|+.+|++++......+ + ..++..+|.++...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4577899999999999999999999999997642111 1 6778899999999999999999999998763
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0081 Score=61.60 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
.+...|.++-.++++.+|..+|.++.+...+++ +.+.++....+-..+.+.-...+...-+..|.+ +.+.+-.|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc-hHHHHHHH
Confidence 455678889999999999999999987655443 334444445555666666666666666677866 66777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
...++.+.+.+|+..+....+.-.++...|...- +.+-+ .+...-...|.++...|.+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----------i~~l~-----------~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----------IQQLF-----------SDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----------HHHHh-----------hHHHHHHHHHHHHHhcCCc
Confidence 8889999999999888776554222222111111 00000 1112233456677777888
Q ss_pred HHHHHHHHHHHh
Q 002286 285 FLVEQLTETALA 296 (942)
Q Consensus 285 ~~a~~~~~~~~~ 296 (942)
.++...+++.+.
T Consensus 145 ~EgR~iLn~i~~ 156 (549)
T PF07079_consen 145 SEGRAILNRIIE 156 (549)
T ss_pred chHHHHHHHHHH
Confidence 877777777664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=62.97 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 002286 655 THLEKAKELYTRVIV-QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~-~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (942)
|++.+|...|++++. ...+++..+.+++......+++..|...++++.+..|.. ..|+....+|.++..+|.+.+|
T Consensus 103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~---r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF---RSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc---CCCCchHHHHHHHHhcCCchhH
Confidence 555555555555554 234455555666666666666666666666666655432 3455666666666666666666
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHH
Q 002286 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771 (942)
Q Consensus 734 ~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 771 (942)
...|+.++..+| ++......+..+.++|+..+|..
T Consensus 180 esafe~a~~~yp---g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 180 ESAFEVAISYYP---GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHhcchhHHHH
Confidence 666666666543 34455555566666665555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.01 Score=60.65 Aligned_cols=419 Identities=12% Similarity=0.036 Sum_probs=228.3
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
-+..-++.+|++...|+.+..-+-.+|.+++-.+.+++...-.|--+.+|......-...++|.....+|.+++...-+-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45556788999999999999999999999999999999988888778888776666677789999999999988765442
Q ss_pred chhhHhhHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc------HHhHHHHHHHHHH
Q 002286 196 PGAIRLGIGLCRYKLGQ----------LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQR 259 (942)
Q Consensus 196 ~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~~~~A~~~~~~ 259 (942)
+.|... .-|.+.-+ .-+|.+..-.+.-.+|.....|...+..+..-.. ....+.-...|.+
T Consensus 110 --dLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 110 --DLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred --hHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 333322 22222211 1122222222223467777777766665443221 1124455556666
Q ss_pred HHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 002286 260 AFEIYPYCAM-ALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (942)
Q Consensus 260 ~~~~~p~~~~-~~~~la~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 335 (942)
++...-++.. .| .+|+.-+.-..++... .+..| -|-.|...|++.....
T Consensus 187 al~tP~~nleklW----------~dy~~fE~e~N~~TarKfvge~sp-----------------~ym~ar~~yqe~~nlt 239 (660)
T COG5107 187 ALQTPMGNLEKLW----------KDYENFELELNKITARKFVGETSP-----------------IYMSARQRYQEIQNLT 239 (660)
T ss_pred HHcCccccHHHHH----------HHHHHHHHHHHHHHHHHHhcccCH-----------------HHHHHHHHHHHHHHHh
Confidence 6554333221 11 1122111111111100 00001 1222223333222110
Q ss_pred C----CCCCch-----------hhhhcHHHHHHHc-----CCh-H-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002286 336 N----KPHEFI-----------FPYYGLGQVQLKL-----GDF-R-SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393 (942)
Q Consensus 336 ~----~~~~~~-----------~~~~~la~~~~~~-----g~~-~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 393 (942)
. .+|.+. .-|++....-... |+. . .---.+++++...|-.+++|+.........++-+
T Consensus 240 ~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q 319 (660)
T COG5107 240 RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQ 319 (660)
T ss_pred ccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHH
Confidence 0 000000 0022221111111 111 1 1222456667777777888888777777778888
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHH
Q 002286 394 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQ 469 (942)
Q Consensus 394 ~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 469 (942)
.|+....+.+...|. ....++..+ ...+.+....+|++..+..... +..+..-.. -|+++...+
T Consensus 320 ~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~E 387 (660)
T COG5107 320 KALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKE 387 (660)
T ss_pred HHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHH
Confidence 887777776655554 556677777 5566666666666665543221 000000000 111211111
Q ss_pred HHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHH
Q 002286 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (942)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (942)
++-+-.. ....++........+..-.+.|..+|.
T Consensus 388 ll~kr~~----------------------------------------------k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 388 LLLKRIN----------------------------------------------KLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHHHHHh----------------------------------------------hhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1110000 112222223333334445677777887
Q ss_pred HHHHhCCCcHHHHHHHHHH-HHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 550 LILFKYQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 550 ~~l~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
++-+..-...++|..-|.+ +...|++..|...|+-.+...|+++.....+-..+...++-..|...|+.++..
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 7765442334445444444 556789999999999999999998887777777888888988999999877653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-05 Score=63.98 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHH
Q 002286 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYL 756 (942)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l 756 (942)
..-|..+.+.|+.+.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-++++++..+.... -.++...
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3457888899999999999999999998 88999999999999999999999999999998654433 5677888
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
|.+|...|+-+.|..-|..+-.+..
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCC
Confidence 9999999999999999988887764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-06 Score=66.51 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (942)
|+-..+++.+|.+|...|++++|+.+|+++++... ++..+....++.++|.++..+|++++|+++|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45567889999999999999999999999997631 11112346789999999999999999999999999864
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.019 Score=59.89 Aligned_cols=102 Identities=15% Similarity=0.025 Sum_probs=81.6
Q ss_pred CCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCChhHHHHHHHHHHhhcCCChhHHHH
Q 002286 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSM 598 (942)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~ 598 (942)
.+...+....+-..+.+.|-+.+|...|.......|-+...+..+..+-.. .-+...+..+|+.++.....++++|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 345666666777788888999999999999999988887777766665332 234778899999999999999999999
Q ss_pred hhhhhccccchHHHHHHHHHhhcc
Q 002286 599 LGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
+-..-...|..+.+-..+-++.+.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHh
Confidence 888888899888887777777663
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.001 Score=69.75 Aligned_cols=116 Identities=20% Similarity=0.086 Sum_probs=83.4
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
...+++.+|.+...+..-+.....+|+..+|..++..++-..|.. -.+++.+|.++.+.|...+|--++..++...|.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 334455555555444445555566788888888888888776654 346788888888888888888777777776666
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
. ...++.+|.++..+|++......|..+.+.+|.....
T Consensus 282 ~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 282 F-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred c-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 5 4447788888888888888888888888888875444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00043 Score=67.39 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc-CCCCchhHHH--hhhhHHHHH
Q 002286 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNYFA 641 (942)
Q Consensus 565 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l~~~~y~~ 641 (942)
-+.+....|++.+|....++.+...|.+..++..--.++..+|+...-...+++++.. .++...++++ .++-. ...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHH
Confidence 3456677899999999999999999999999999999999999999999999999876 4443334332 22222 334
Q ss_pred HHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 002286 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 721 (942)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 721 (942)
. |.|++|.+.-+++++++|.+.++...++.++...|++.++.+...+--+.-..+.. ....-|..-|
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHHHH
Confidence 4 99999999999999999999999999999999999999999998887654432211 2344567778
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 722 HVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
-++...+.|+.|.+.|..-+-+-....|
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 8889999999999999876544334444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=60.22 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhHHHHH
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~ 207 (942)
+-..|..+...|+.+.|++.|.+++..-|.++.+|...|..+.-+|+.++|+.-+++++++.... .-..+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44578889999999999999999999999999999999999999999999999999999986433 134577899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 002286 208 YKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (942)
..+|+.+.|+..|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999998887643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=82.50 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
+|+++.+++++|.+|+..|+|++|+..|++++.++|++..+ |+.+|.+|..+|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555556665555566666666665555555555532 555555555555555555555555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.04 Score=62.27 Aligned_cols=227 Identities=17% Similarity=0.122 Sum_probs=157.8
Q ss_pred cchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhh
Q 002286 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (942)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 602 (942)
+.+.+|..+|.+..+.|...+|++.|-+ .+++..|.....+....|.|++-+.++.-+.+.. ..+.+-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHH
Confidence 3677888999999999999999988765 3566778888888899999999988887776543 233444455566
Q ss_pred hccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002286 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (942)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (942)
|.+.++..+-.+.+. +|. ..-.-..|+- ++.. |.|+.|.-+|.. +.-+..|+
T Consensus 1176 yAkt~rl~elE~fi~-----gpN--~A~i~~vGdr-cf~~------------~~y~aAkl~y~~--------vSN~a~La 1227 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-----GPN--VANIQQVGDR-CFEE------------KMYEAAKLLYSN--------VSNFAKLA 1227 (1666)
T ss_pred HHHhchHHHHHHHhc-----CCC--chhHHHHhHH-Hhhh------------hhhHHHHHHHHH--------hhhHHHHH
Confidence 667777655444332 222 2223346776 6666 889988888864 34577889
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 002286 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (942)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~ 762 (942)
..+...|+|..|.+..+++ ++..+|-....++...+.|.-|.-+=-.. --.+.-+-.+...|..
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiCGL~i------ivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQICGLNI------IVHADELEELIEYYQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhcCceE------EEehHhHHHHHHHHHh
Confidence 9999999999998887776 45667877777777777776664331110 1124556677777888
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHH
Q 002286 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (942)
Q Consensus 763 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 799 (942)
.|-+++-+..++.++.+.-.+-...-.+|..|.+.-.
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 8888888888888887776555555556766665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0013 Score=60.88 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH--hcCCHhHHHHHHHHHHHHHHHcCCCCC-H
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVP-I 448 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-~ 448 (942)
.+...+.+|.+ +++.+|+.++++++++..+. +..+..+|.+| ...++++|+.+|+++-+.+........ .
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 33344444433 37777777777777765443 23455889999 568999999999999998765432222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..+...+..-...++|.+|+..|++........++ .....-.-+
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L------------------------------------LKys~Kdyf 198 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL------------------------------------LKYSAKDYF 198 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------------------------------------HHhHHHHHH
Confidence 56667777888899999999999998763211000 011112234
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (942)
+.-|.++.-..+.-.+...+++....+|...++
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 445666666677777777788888888876443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=80.92 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=65.3
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 157 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
.+|+++.+++.+|.+++..|+|++|+..|+++++++|++.. .+|+++|.||..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999832 459999999999999999999999999973
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0035 Score=58.21 Aligned_cols=186 Identities=18% Similarity=0.135 Sum_probs=122.4
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002286 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (942)
.+++++|.++|.++ +..| ...++..|-..|.++.....+.+...+...-+.-+.-.++.+++.+|
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHH
Confidence 34677777766655 3344 44556666666666666655555444433323333334455588888
Q ss_pred HHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc-CCHHHHHH
Q 002286 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASV 546 (942)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 546 (942)
+..++++++.....+.+ ..-..-+..+|.+|+.. .++++|+.
T Consensus 93 v~cL~~aieIyt~~Grf-------------------------------------~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRF-------------------------------------TMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred HHHHHHHHHHHHhhhHH-------------------------------------HHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 88888887743221110 11233455778888765 88999999
Q ss_pred HHHHHHHhCCC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh-------HHHHhhhhhccccchHHHH
Q 002286 547 LYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAK 613 (942)
Q Consensus 547 ~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~ 613 (942)
.|+++-.-... -..+++..+......++|.+|+..|+++....-+++. -++.-|.+++-..+.-.+.
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 99998764432 2457788888888999999999999999887766654 3344566777778888888
Q ss_pred HHHHHhhccCCC
Q 002286 614 ETFRAASDATDG 625 (942)
Q Consensus 614 ~~~~~~~~~~~~ 625 (942)
..+++..+..|.
T Consensus 216 ~ALeky~~~dP~ 227 (288)
T KOG1586|consen 216 RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHhcCCc
Confidence 888888888776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00043 Score=70.49 Aligned_cols=128 Identities=12% Similarity=0.186 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A 733 (942)
+..+.|..+|.++++..+.+...|...|.+-.. .++...|..+|+.+++..| .++..|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 779999999999997666678888888888666 5566669999999999998 7899999999999999999999
Q ss_pred HHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 734 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 734 ~~~~~~al~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
..+|++++...+... ...++......-.+.|+.+...++.+++.+..|++..+.
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999855444 356888888888899999999999999999999865443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0038 Score=65.70 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=82.8
Q ss_pred HHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHH
Q 002286 676 YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754 (942)
Q Consensus 676 ~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 754 (942)
+...++|-+|. -.|+...|+.++..+....|. .......+||.++..-|....|-..+.+++.. ....|-..+
T Consensus 607 w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~sepl~~~ 680 (886)
T KOG4507|consen 607 WLILNEAGLYWRAVGNSTFAIACLQRALNLAPL----QQDVPLVNLANLLIHYGLHLDATKLLLQALAI--NSSEPLTFL 680 (886)
T ss_pred EEEeecccceeeecCCcHHHHHHHHHHhccChh----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cccCchHHH
Confidence 33334444444 478888888888888777763 23345678888888888888888888888887 456677888
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 755 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.+|+++....+.+.|++.|+.|+++.|+++.+.-.+-.+
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 888888888888888888888888888888777665544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=65.07 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 002286 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 178 (942)
-|+.|.+.++.....+|.+++.++..|.+++...+ +++|+.-|+.++.++|+...+++.+|.++...+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~- 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF- 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-
Confidence 46666666666666777777777776666655533 2344445555555555555555555555444331
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
+.|+. .. ....|++|..+|+++...+|++......
T Consensus 85 ------------l~~d~-~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 85 ------------LTPDT-AE----------AEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp ------------H---H-HH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ------------hcCCh-HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 11111 00 0112566777777777777776654333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=59.86 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=84.5
Q ss_pred hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
....+.++..+++++..+.-..|.+.+...-...+.-.....++++|+.+|++++...... .
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--------------d---- 144 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--------------D---- 144 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--------------c----
Confidence 4444455555555555554444444333333333333445566777777777776631100 0
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcCC
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~l~~~~~~~~~ 574 (942)
....-...+-..++++.+...+.+|...+.+-.. ..|+....+.....++.-..+
T Consensus 145 -------------------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D 205 (308)
T KOG1585|consen 145 -------------------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD 205 (308)
T ss_pred -------------------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH
Confidence 0011233445566777777777777666554332 223333445555566666778
Q ss_pred hhHHHHHHHHHHhhc----CCChhHHHHhhhhhccccchHHHHHHHH
Q 002286 575 LQLSIELVNEALKVN----GKYPNALSMLGDLELKNDDWVKAKETFR 617 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (942)
+..|..+++...++. |++..+..+|-.. +..|+.+.....+.
T Consensus 206 yv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 888888887765543 3444455555554 34566666555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=65.60 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~ 143 (942)
...+++|+.-|+.++.++|+..++++.+|.+|...+.
T Consensus 48 ~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 48 KKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999988763
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00037 Score=71.00 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
+|+.......+.+..+.|..+|.++.+..+.....|...|.+.+. .++.+.|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 455555555555566666666666664444456666666666555 344444666666666666666 555666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..|+.+.|+.+|++++..-|... ..|..........|+ .+....+..++....|.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 66666666666666666555433 355555666666666 6666666666666666644
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=66.40 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
...|..|+..|.+++.++|..+..|-.++.++++..+++.+.....++++++|+.+.+.+.+|.+......|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 002286 187 RALQVH 192 (942)
Q Consensus 187 ~~l~~~ 192 (942)
++..+.
T Consensus 103 ra~sl~ 108 (284)
T KOG4642|consen 103 RAYSLL 108 (284)
T ss_pred HHHHHH
Confidence 996653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0025 Score=65.66 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhh----cCCChhHHHHhhhhhcc---ccchHHHHHHHHHhhccCCCCchhHH
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 631 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 631 (942)
++....+-..|....+|+.-+.+++.+-.. -++.+.+.+.+|.++.+ .|+.++|+..+..++.....+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566666777778888777777776665 45566777788888877 78888888888887666666677777
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHH
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (942)
..+|.+ |.......... .....++|+..|.++...+| +.+.-.+++.++.-.|.-.+..
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccch
Confidence 778888 77664332111 12569999999999999995 4555556677777667544433
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=66.93 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=97.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (942)
-|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+.+..++.+|..+ ....++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455666778899999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002286 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (942)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (942)
.|+..+.++..+......+....+...+-.+-...=...++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 9999999998887776554444555555444443333334433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=52.13 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 170 (942)
|.+++.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577888888888888888888888888888888888887765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0044 Score=64.67 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=129.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
..+..-.++..+...-++.-.+|++++|+++.+++.|+.-.... ..++..+|+++++.......- ......
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~T-----i~Eae~l~rqAvkAgE~~lg~----s~~~~~ 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAST-----IVEAEELLRQAVKAGEASLGK----SQFLQH 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccC-----HHHHHHHHHHHHHHHHHhhch----hhhhhc
Confidence 34556667788888999999999999999999999888654443 677888888877653321100 000000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.|..- + ..... .......+...+|.+..+.|+.++|++.+..+++..+ ..+...++.+|..++...+.|.+
T Consensus 243 ~g~~~------e-~~~~R-dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 243 HGHFW------E-AWHRR-DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred ccchh------h-hhhcc-ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHH
Confidence 01000 0 00000 0111234567789999999999999999999997543 23455678899999999999999
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 361 ALTNFEKVLEI-YPDNCETLKALGHIYVQL-GQ---------------IEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
+...+.+.-+. -|+.+...+..+.+-.+. ++ -..|.+.+.++++.+|..+..+..+
T Consensus 314 ~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 314 VQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 99998886443 256666665555544331 21 2346788899999998877665443
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0024 Score=62.38 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCch--hhHhhHHHHHH
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-HPSCPG--AIRLGIGLCRY 208 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~--~~~~~la~~~~ 208 (942)
-..+.+....|++.+|....+++++..|.+..++..--.+++..|+...-...+++++.. +|+.|- .+.-.++.++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 345566778899999999999999999999999988888999999999999999999887 666543 33445788889
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
..|-+++|...-.++++++|.+..+...++.++...++ +.++.+...+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~t 235 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKT 235 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhc
Confidence 99999999999999999999999999999999999988 88888877654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.4e-05 Score=51.31 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=32.3
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
.+++.+|..|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356777888888888888888888888888888887777764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0088 Score=67.48 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
+.....+|.+|..-+.-. ..+++.|+.+|..+..
T Consensus 244 ~~a~~~~g~~y~~G~~g~------~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGV------TQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhccccc------cccHHHHHHHHHHHHH
Confidence 344555566655443322 3345566666665544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.045 Score=60.27 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhhhcHHHHHHHcCChHHH
Q 002286 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
+...+..++....... |..+-..+..|+++...|+.++|+..|++++..-.. ..-....++.++.++.-+++|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445666666655544 445566666777777777777777777766531111 122234577788888888888888
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 002286 362 LTNFEKVLEIYPDN-CETLKALGHIYVQLGQI-------EKAQELLRKAAKI 405 (942)
Q Consensus 362 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~ 405 (942)
..++..+.+.+.-. ....+..|.|+...|+. ++|...+.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88888888765543 33456677777888877 7888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0048 Score=57.72 Aligned_cols=165 Identities=14% Similarity=0.135 Sum_probs=100.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHH-HHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 002286 382 LGHIYVQLGQIEKAQELLRKAAKID-----PRDAQ-AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNI 454 (942)
Q Consensus 382 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l 454 (942)
.+.+...+..+.++..+++++..+. |+... ++-.-+.+++..+++.|+.+|++++.+....+... -.+.+...
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3334444445555555555554432 32222 22223344477789999999999999887653322 23677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
+.++.+...+++|...+.+-....... +..+.....+.....+
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~-------------------------------------~~y~~~~k~~va~ilv 199 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKC-------------------------------------DAYNSQCKAYVAAILV 199 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHH-------------------------------------hhcccHHHHHHHHHHH
Confidence 889999999999988887755421100 0122233445555666
Q ss_pred HhhcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKY----QDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
+.-..++..|..+++..-++. |++..+.-+|.. .+..|+.+++...+..
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVLSS 252 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHHcC
Confidence 777789999999999866532 444555555544 3456888877766643
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00064 Score=74.54 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcC
Q 002286 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124 (942)
Q Consensus 45 ~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~ 124 (942)
.+....--.|+-+.++..|..+..... .. .-+..+..|+....-.+-...+ . ...+...|..++.......
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~---i~----~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~y 263 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSEN---IR----SPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKRY 263 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCC---cc----hHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHhC
Confidence 333344445899999999988765321 11 1122333333222222222211 1 3455668999999999999
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
|+.+-.++..|+++...|+.++|+..|++++..... ...+++.+|.++..+++|++|...+.++.+.+.-+.....
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999999999999999999999988743222 2356788899999999999999999999988877767777
Q ss_pred hhHHHHHHHcCCH-------HHHHHHHHHHH
Q 002286 201 LGIGLCRYKLGQL-------GKARQAFQRAL 224 (942)
Q Consensus 201 ~~la~~~~~~g~~-------~~A~~~~~~al 224 (942)
+..|.|+...|+. ++|...|.++-
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8889999999988 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0082 Score=67.74 Aligned_cols=270 Identities=18% Similarity=0.175 Sum_probs=186.2
Q ss_pred chhHHHHHHHHHhhc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhh
Q 002286 524 KVTVLFNLARLLEQI-----HDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKV 588 (942)
Q Consensus 524 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~l~~ 588 (942)
+......+|.++..- .+++.|+.+++.+... .-.++.+.+.+|.+|.... +...|+.++.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 667777778777653 5899999999998761 1224567888999998743 677899999998776
Q ss_pred cCCChhHHHHhhhhhcccc---chHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHH
Q 002286 589 NGKYPNALSMLGDLELKND---DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (942)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (942)
. ++.+.+.+|.++.... +...|..+|..+...+ ...+.+.++.+ |....... .+...|..+|.
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~-y~~G~gv~--------r~~~~A~~~~k 388 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALC-YELGLGVE--------RNLELAFAYYK 388 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHH-HHhCCCcC--------CCHHHHHHHHH
Confidence 4 6778888999887755 6789999999998876 55667777777 65542222 67899999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh----cCHHHHHHHHHHH
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKMYQNC 740 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~a 740 (942)
++...+ ++.+...++..+... +.++.+...+....+..-.... .+...+.......... .+...+...|.++
T Consensus 389 ~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a 465 (552)
T KOG1550|consen 389 KAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ-SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRA 465 (552)
T ss_pred HHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh-hHHHHHHHhccccccccccccchhHHHHHHHHH
Confidence 999988 556666666555533 7888888777777665421100 1111111111111111 2566777777776
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHc---c-cHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHH
Q 002286 741 LRKFYYNTDAQILLYLARTHYEA---E-QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTV 816 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~ 816 (942)
... .++.+...||.+|+.- + +++.|...|.++-... +...||++.+ ...+. .+
T Consensus 466 ~~~----g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~-~e~g~---------------g~ 522 (552)
T KOG1550|consen 466 AAQ----GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM-HEHGE---------------GI 522 (552)
T ss_pred Hhc----cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH-HhcCc---------------Cc
Confidence 554 4577889999999875 3 5888999999988877 8999999994 43332 12
Q ss_pred HHHHHHHHHHHHHhhCC
Q 002286 817 AELENAVRVFSHLSAAS 833 (942)
Q Consensus 817 ~~l~~a~~~~~~l~~~~ 833 (942)
..+..|.+.+...+..+
T Consensus 523 ~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 523 KVLHLAKRYYDQASEED 539 (552)
T ss_pred chhHHHHHHHHHHHhcC
Confidence 22677777777776644
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0034 Score=65.42 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=119.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHH
Q 002286 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643 (942)
Q Consensus 564 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~ 643 (942)
.+..-..+..+...-++...++++++|+.+.++..++.- ...-..+|...|+++++.... .++.. ....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~- 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ- 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh-
Confidence 444455667777888888888888888888888777643 223456777777777664322 01111 0000
Q ss_pred hhhhcChhHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 002286 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 721 (942)
Q Consensus 644 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la 721 (942)
...-+-..+...+. -+++...+|.+..+.|+.++|++.|..+++..|.. +...++.+|.
T Consensus 242 ----------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLi 302 (539)
T PF04184_consen 242 ----------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLI 302 (539)
T ss_pred ----------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHH
Confidence 00000011111112 34566788999999999999999999999877742 4667999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH-ccc---------------HHHHHHHHHHHHHhCCCChh
Q 002286 722 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~ 785 (942)
.+++.++.|.++...+.+. .....+..+.+.|.-+..-.+ .|+ -..|.+.+.+|++.+|+-|.
T Consensus 303 e~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999998885542 111112234444444333222 122 13477889999999997654
|
The molecular function of this protein is uncertain. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.13 Score=58.16 Aligned_cols=278 Identities=17% Similarity=0.053 Sum_probs=170.6
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch-hhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC-----c
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-----N 375 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~ 375 (942)
+...+.+..-+.-+...|..++|+.+.-.+- +|... ......+.-++..++.. .+...++.-|. +
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhC
Confidence 4446778888888888999999988776553 23222 22222344444444433 33333333343 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
+......+.......++.+|...+.++...-|. . ....-..+.+. ..|+++.|.+..+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 556667777888889999999888887764332 1 22333345555 8899999999999999998876655
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcch
Q 002286 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (942)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (942)
....++..+|.+..-.|++++|..+...+.+...... ......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-------------------------------------~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD-------------------------------------VYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-------------------------------------cHHHHH
Confidence 5667888999999999999999999999877421100 122344
Q ss_pred hHHHHHHHHHhhcCCHHHHH--HHHHHH----HHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh----cCCChh-
Q 002286 526 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 594 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~- 594 (942)
.+....+.++...|+...|. ..+... +...|.........+.++...-+++.+.......++. .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55666688888888433332 333322 2233443223333333333222245444444444433 233222
Q ss_pred --HHHHhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
+.+.++.++...|+.++|...+..+......
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2346788888889999888888877665433
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=75.87 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+++.|+.|+..|.++++++|+.+..+-.++..+++.+++..|+.-+.++++.+|....+++..|......+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCchhhHhhHHHH
Q 002286 186 KRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~ 206 (942)
+......|+. +.+...+..|
T Consensus 96 ~~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 96 EKVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HHhhhcCcCc-HHHHHHHHHH
Confidence 7777777777 4444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.12 Score=52.87 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=64.2
Q ss_pred HhhHHHHHHHcC-CHHHHHHHHHHHHhh----C------CC----CHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 200 RLGIGLCRYKLG-QLGKARQAFQRALQL----D------PE----NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 200 ~~~la~~~~~~g-~~~~A~~~~~~al~~----~------p~----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
.+.+|......+ +++.|..+++++++. . |+ ...++..++.++...+......+|...++.+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 344444444555 555555555555444 1 11 12346677788888777777888888888877777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002286 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (942)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~ 299 (942)
|+.+..+.....+....++.+.+...+.+++...+
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 88777776666666667777777777777776554
|
It is also involved in sporulation []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.11 Score=58.75 Aligned_cols=239 Identities=15% Similarity=0.089 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC--c-------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--Y-------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
.+......+.......++.+|..+..++...-|. . ....-..+.+....|+++.|.++.+.++..-|.+..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3444455566666667777777777766554332 1 233344556677778888888888888777665533
Q ss_pred -----HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhH-----HHhhhhHHHHHHHhhhhcChhHHHHH--HHHHHH
Q 002286 595 -----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA-----TLSLGNWNYFAALRNEKRAPKLEATH--LEKAKE 662 (942)
Q Consensus 595 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 662 (942)
+...+|.+..-.|++.+|......+.+.....+.+- .+.-+.+ .... |+ +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 566677777778888888877777666543333321 1112222 2222 42 223333
Q ss_pred HHH----HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCch-hHHHHHHHHHHHhcCHHHHHHH
Q 002286 663 LYT----RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMP-DVWINLAHVYFAQGNFALAMKM 736 (942)
Q Consensus 663 ~~~----~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 736 (942)
.|. +-+...|...+.....+.++...-+++.+..-.....+.... .+.+..+ -+++.++.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 332 233444665566555555555444466666655555544321 1111222 2335899999999999999999
Q ss_pred HHHHHhhhCCCC-C----HHHHHHHHHHHHHcccHHHHHHHHHH
Q 002286 737 YQNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLR 775 (942)
Q Consensus 737 ~~~al~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 775 (942)
...+......+. . ..+..-....|...|+...|..++.+
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999888765442 2 22222333456668999999988877
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.4e-05 Score=47.52 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCchHHH
Q 002286 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (942)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (942)
|+++++.+|+|+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.27 Score=55.99 Aligned_cols=330 Identities=15% Similarity=0.167 Sum_probs=158.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHH
Q 002286 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYY 117 (942)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~ 117 (942)
.+++.--....+++..+-..+-+++|++++-.. +.|+++ ....+.|...-.+..+ ..-..+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~--S~Fse~----~nLQnLLiLtAikad~------------trVm~YI 1043 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDN--SVFSEN----RNLQNLLILTAIKADR------------TRVMEYI 1043 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC--cccccc----hhhhhhHHHHHhhcCh------------HHHHHHH
Confidence 344444445566777788888888888865432 124432 2222222211111100 1233444
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
++.-..|.. ..|.+....+-|++|...|++.- -+..+...+ .-..++.+.|.++.+++- .+
T Consensus 1044 ~rLdnyDa~------~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VL---ie~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1044 NRLDNYDAP------DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQVL---IENIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred HHhccCCch------hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH---HHHhhhHHHHHHHHHhhC------Ch
Confidence 443322221 23555556666677766665531 112222111 122344444544444331 14
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
.+|..+|.+-.+.|...+|++.|-++ +++..+.....+....|. +++-+.++.-+-+... .+.+-..|...
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 55666666666666666666666543 344445555555555555 5555555544433221 11222233334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCC
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~ 357 (942)
|...++..+.+.+.. .|+. .-.-..|.-++..|.|+.|.-+|...-. |..++..+...|+
T Consensus 1176 yAkt~rl~elE~fi~--------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGE 1235 (1666)
T ss_pred HHHhchHHHHHHHhc--------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHH
Confidence 444444444333321 1211 1223445555555666655555543321 4445556666666
Q ss_pred hHHHHHHHHHHHHhC---------------------C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 358 FRSALTNFEKVLEIY---------------------P----DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~---------------------p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
|..|...-+++-... . -+++-+-.+...|...|-+++-+..++.++.+...+...
T Consensus 1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence 666665555542110 0 013334455556666677777777777776666666666
Q ss_pred HHHHHHHHhcCCHhHHHHHHH
Q 002286 413 FIDLGELLISSDTGAALDAFK 433 (942)
Q Consensus 413 ~~~la~~~~~~~~~~A~~~~~ 433 (942)
+..+|.+|..-.+++-.+.++
T Consensus 1316 fTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1316 FTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHhcCHHHHHHHHH
Confidence 666666664445555544443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.065 Score=54.72 Aligned_cols=234 Identities=14% Similarity=0.095 Sum_probs=138.4
Q ss_pred HHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCC----cchhHHHHHHH
Q 002286 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW----NKVTVLFNLAR 533 (942)
Q Consensus 458 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~la~ 533 (942)
....|+++.|..++.++-.... ...| .-...+++.|.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~---------------------------------------~~~~~~~~~La~~~yn~G~ 43 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN---------------------------------------SLDPDMAEELARVCYNIGK 43 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh---------------------------------------cCCcHHHHHHHHHHHHHHH
Confidence 3567899999999998866320 0122 23567888999
Q ss_pred HHhhcC-CHHHHHHHHHHHHHh----CC------Cc----HHHHHHHHHHHHHcCChh---HHHHHHHHHHhhcCCChhH
Q 002286 534 LLEQIH-DTVAASVLYRLILFK----YQ------DY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNA 595 (942)
Q Consensus 534 ~~~~~g-~~~~A~~~~~~~l~~----~p------~~----~~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~ 595 (942)
.....+ +++.|..+++++... .+ +. ..++..++.++...+.++ +|..+++.+....|+.+.+
T Consensus 44 ~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~ 123 (278)
T PF08631_consen 44 SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV 123 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence 999999 999999999998876 21 11 446677788888877654 4666666777777888888
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC--CC
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH--TS 673 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~ 673 (942)
+...-.+..+.++.+.+.+.+.+++...+-++...-..+..+.-+.. .....|...+...+... |.
T Consensus 124 ~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~------------~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 124 FLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE------------KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh------------hCcHHHHHHHHHHHHHHhCCC
Confidence 87777777778999999999999998765323322222232201111 33455666666655432 33
Q ss_pred CH-HH-HHHHHHHHHhc--CCchHH--HHHHHHHHH---HhcCCCCCC-----chhHHHHHHHHHHHhcCHHHHHHHHHH
Q 002286 674 NL-YA-ANGAGVVLAEK--GQFDVS--KDLFTQVQE---AASGSVFVQ-----MPDVWINLAHVYFAQGNFALAMKMYQN 739 (942)
Q Consensus 674 ~~-~a-~~~la~~~~~~--g~~~~A--~~~~~~~~~---~~p~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~ 739 (942)
.. +. ..-+..++... ++.... ++....+++ ...+.+... ....+.+.|...++.++|+.|+.+|+-
T Consensus 192 ~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 192 EDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 21 11 11122222222 222222 222222222 111111111 112355667777888888888888887
Q ss_pred HHh
Q 002286 740 CLR 742 (942)
Q Consensus 740 al~ 742 (942)
++.
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 764
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.046 Score=58.78 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCC-
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHE- 340 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~- 340 (942)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+......|+..+|+..+...+. .......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3344567778888888888888888888887764322 222567778888888888888888888887776 2111100
Q ss_pred chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcCcHHHHH
Q 002286 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL------GQIEKAQELLRKAAKIDPRDAQAFI 414 (942)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~~~ 414 (942)
........+..+.............. ......++..+|...... +..+++...|..+++.+|....+|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred ccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 00000000000000000000000000 011234556666666665 6777777777777777777777777
Q ss_pred HHHHHH
Q 002286 415 DLGELL 420 (942)
Q Consensus 415 ~la~~~ 420 (942)
.+|..+
T Consensus 297 ~~a~~~ 302 (352)
T PF02259_consen 297 SWALFN 302 (352)
T ss_pred HHHHHH
Confidence 776654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0093 Score=58.16 Aligned_cols=152 Identities=18% Similarity=0.073 Sum_probs=96.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
....-+..+.-....|++.+|...|..++...|.+..+...+|.++...|+.+.|..++...-.................
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 44456667778888888888888888888888888888888888888888888887777654332222211110011122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--CAMALNYLANHFFFTG 282 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g 282 (942)
+.+.....+. ..+++.+..+|++.++.+.++..+...|+ .+.|++.+-..++.+-. +..+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333322 23445556688888888888888888887 78888777777766532 3344444444444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.66 Score=58.51 Aligned_cols=366 Identities=12% Similarity=0.051 Sum_probs=203.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHH-HHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA-ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 44 ~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
.++|.+-++.|.|..|...++.-..... .++.-. .+..+-.+|...+..+.. .-.... ..
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDgV-----------~Gv~~~-r~ 1447 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDGV-----------EGVSAR-RF 1447 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcchh-----------hhHHHH-hh
Confidence 3788889999999999999998411111 112222 334444477766665521 111111 12
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+| .+......+...|++..|..+|+++++.+|+....+.+.-...+..|.+...+...+-.....++........
T Consensus 1448 a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1448 ADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred cCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHH
Confidence 233 5667777888899999999999999999999888888888888999999999887776666555553333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHh--HHHHHHHHHHHHHhCC--------CCHHHHH
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG--IRKGMEKMQRAFEIYP--------YCAMALN 272 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--~~~A~~~~~~~~~~~p--------~~~~~~~ 272 (942)
--.+-|++++++.-..... ..+-.+..+.. +|.+.......+. ..+.++..+..+ ..| .....+.
T Consensus 1524 ~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~ 1598 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYE 1598 (2382)
T ss_pred HHHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHH
Confidence 3344588888877665544 22222222221 4544444332111 112222222211 011 0001111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCCchhhhhcH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPHEFIFPYYGL 348 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~l 348 (942)
.+..... .-+.+.........- ..++...+.+.|-+....-....+..+-+-.++++.-.. .........|+..
T Consensus 1599 ~~~kLH~-l~el~~~~~~l~~~s-~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1599 ILMKLHL-LLELENSIEELKKVS-YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHH-HHHHHHHHHHhhccC-ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 1111110 001111111111100 011111222233333222222223444444555554322 1234556778889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC----------c------HH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PR----------D------AQ 411 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~----------~------~~ 411 (942)
|.+....|+++.|...+-++.+.. -+.+....|......|+...|+..+++.+..+ |+ . ..
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~ 1754 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKK 1754 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhh
Confidence 999999999999998888887765 56788888999999999999999999988653 22 1 12
Q ss_pred HHHHHHHHH-hcCCH--hHHHHHHHHHHHHHHH
Q 002286 412 AFIDLGELL-ISSDT--GAALDAFKTARTLLKK 441 (942)
Q Consensus 412 ~~~~la~~~-~~~~~--~~A~~~~~~a~~~~~~ 441 (942)
+.+.++... ..+++ ..-+.+|..+....+.
T Consensus 1755 ~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1755 AKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 344444444 55553 3456677777777664
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.001 Score=61.96 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLE--------ADRDN----------VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
..++-..|+-++..|+|.+|...|..++. ..|.. ...++..+.|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45667788999999999999998888763 24443 3456677777788888888888888888
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (942)
...|.+ ..+++..|.+....-+..+|...|.++++++|.-.
T Consensus 258 ~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 888877 66677778777777788888888888888877643
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.019 Score=56.58 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhH
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 790 (942)
.+.-+-.-|.-|++.++|..|+..|.+.++.-...++ ...|.+.+-+.+..|+|..|+.-+.+++...|.+...++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4455566688899999999999999999987444444 66677888899999999999999999999999998888888
Q ss_pred HHHH
Q 002286 791 GVAM 794 (942)
Q Consensus 791 a~~~ 794 (942)
|.|+
T Consensus 160 Akc~ 163 (390)
T KOG0551|consen 160 AKCL 163 (390)
T ss_pred hHHH
Confidence 8773
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0001 Score=46.55 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHH
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 148 (942)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00029 Score=72.85 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
-..+...+..+.|+.|+..|.+++.++|+++..+-..+..+.+.++|..|+.-+.++++.+|.. ...|+..|.+...++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3456667777888888888888888888888888888888888888888888888888888888 666888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
.+.+|...|+....+.|+++.+...+..+.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888888888888888888888776666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.01 Score=53.97 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (942)
..+...++..+...|++++|...++.++....+..-...+-..++.+++..|.+++|+..++..... .-.+......|.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhh
Confidence 3445667777778888888888888777532222223445667788888888888888777665321 112344566788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 385 IYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 385 ~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
++...|+.++|+..|.+++...++.
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCCh
Confidence 8888888888888888888776443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0014 Score=60.97 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
..++..-|+-++..|+|.+|...|..|+..-......+......+ ++.+......
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-------------------------~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-------------------------LELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-------------------------HHHHHhhhHH
Confidence 356667788999999999999999998763211111000000000 0022234567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 595 (942)
+.|++.++...|++-++++....++..+|.+..+|++.|......-+..+|..-|.+++.++|.-..+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 78888889889999999999999999999999999999998888888888999999988888865443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00042 Score=44.24 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
.+++.+|.+++..|++++|++.|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.041 Score=57.04 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCCchhhHhhHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHH
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQR-ALQLDPENVEALV 235 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~ 235 (942)
....+-.+|....+|+.-+.+.+.+-.. -++. ..+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444445556666666666666554443 1222 4455566666666 6666777766666 3334445666666
Q ss_pred HHHHHHHhh------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 236 ~l~~~~~~~------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
.+|.+|... .+....++|+..|.+++..+|+.- .-.+++.++...|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g 273 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcC
Confidence 666665432 123347788888888888886443 2233333444444
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.064 Score=51.10 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=144.7
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~-~A~~~~~~~l 189 (942)
.|+.+-..++..+|.+-.+|-.+-.++-..+ +..+-++.++.++..+|+|...|...-.+.-..|++. .-+.+.+.++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776655 6788899999999999999999999988888899988 8899999999
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hc--cHHhHHHHHHHHHHHHHhCCC
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-AN--EAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~--~~~~~~~A~~~~~~~~~~~p~ 266 (942)
..+..+ -.+|...--|....+.++.-+.+-.+.++.+-.|-.+|...-.+... .| +....+.-+.+..+.+...|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988877 56677788888888899999999999999988877777644322222 11 112356667788888999999
Q ss_pred CHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH
Q 002286 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (942)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~a~~~~~~~~ 295 (942)
+..+|+.|..++.. .| .+.+...+.....
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999888875 44 2334444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=53.72 Aligned_cols=116 Identities=19% Similarity=0.029 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 256 KMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 256 ~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
..++....+|.+. .+...++..+...|++++|+..++.++..+.+....+.+-..++++....|.+++|+..+....
T Consensus 74 ~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 74 AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 3334444444433 4456678888999999999999999988777767777888999999999999999999987654
Q ss_pred HhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
. +.-........|.++...|+-.+|+..|++++...++.
T Consensus 154 ~----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 154 E----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred c----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 2 22233345668999999999999999999999987554
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.63 Score=55.08 Aligned_cols=393 Identities=12% Similarity=0.045 Sum_probs=205.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 002286 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (942)
Q Consensus 44 ~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~ 123 (942)
+.+-.++.....|+.|+..+.++..+-| +- .+-.++.+.+|...+...+...+ ...|.+|+..|++.. .
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~ 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFP-----GR-KEGYEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLH-G 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCC-----Cc-ccchHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhc-C
Confidence 4555677888999999999999877644 22 24456788888888877765533 368999999999875 4
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhCCCCch-
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-----GRYSDSLEFYKRALQVHPSCPG- 197 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~- 197 (942)
.|..|--|++.|.+|-..|++++-++++.-+++..|++|..-...-.+-++. .+-..|+...--++..-|....
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 6788999999999999999999999999999999998876544433333332 2233444444445544444311
Q ss_pred ------------------------------hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccH
Q 002286 198 ------------------------------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (942)
Q Consensus 198 ------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 247 (942)
...+.+-..|| .|..---...|+++....|- .++...-.+....|..
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 704 (932)
T PRK13184 628 REEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFW-SGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNW 704 (932)
T ss_pred hHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHH-hcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccH
Confidence 01122222222 33333334555665554432 4444444445555653
Q ss_pred HhHHHHHHHHHHHHHh--CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEI--YPYCA--------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YYNLARSYH 316 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~--~p~~~--------~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~la~~~~ 316 (942)
+-..+....+...+.. .|.+. ..+..-..++.....++++.+.+... ++..... ....+.-..
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 778 (932)
T PRK13184 705 EFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT------DPTLILYAFDLFAIQAL 778 (932)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC------CHHHHHHHHHHHHHHHH
Confidence 3333333333332221 11111 11122233344444555555543332 1111111 111111111
Q ss_pred hcCC---HHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCC
Q 002286 317 SKGD---YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQLGQ 391 (942)
Q Consensus 317 ~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~ 391 (942)
..++ .-.+++.+.+... ..............+|....++++|-+.+...-. ...+...+....|..+.-.++
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (932)
T PRK13184 779 LDEEGESIIQLLQLIYDYVS---EEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTED 855 (932)
T ss_pred HhccchHHHHHHHHHHhccC---ChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCc
Confidence 1122 2222222222211 1111122233345666777777777777643211 123345677777777777777
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (942)
.+-|..+|..+.+-.| .+.++ .+..+ ..|...+...+.++ ..++..+...+.-.|+.++- ..
T Consensus 856 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~ 918 (932)
T PRK13184 856 REAAKAHFSGCREDAL-FPRSL--DGDIFDYLGKISDNLSWWEK-------------KQLLRQKFLYFHCLGDSEER-DK 918 (932)
T ss_pred hhHHHHHHhhcccccc-Ccchh--hccccchhccccccccHHHH-------------HHHHHHHHHHHHHhCChhHh-HH
Confidence 7777777776653211 11222 12222 33333333333222 23344445555566776666 66
Q ss_pred HHHHhh
Q 002286 471 FKDALG 476 (942)
Q Consensus 471 ~~~al~ 476 (942)
|+.+..
T Consensus 919 ~~~~~~ 924 (932)
T PRK13184 919 YRQAYL 924 (932)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0066 Score=63.79 Aligned_cols=175 Identities=19% Similarity=0.187 Sum_probs=120.3
Q ss_pred ChhHHHHHHHhccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHH--HHHcchhhhh
Q 002286 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (942)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--y~~~g~~~~~ 102 (942)
||+.+..+|...|--.+.+++++.++..+|+...|.+++++++-.- ++. .+...... -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----------e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----------ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHH-HHHHhhhhhcccccCccc--
Confidence 8999999999999999999999999999999999999999986321 000 00000000 01111111
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHhcCC
Q 002286 103 QREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~-~~~~a~~~~~~g~ 177 (942)
.--..+.| -.+++.....+.+.|-+..|.+.++-.++++|. ++.. ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 00001222 235556778889999999999999999999998 6654 4444455577788
Q ss_pred hHHHHHHHHHHHHhCC-C---CchhhHhhHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 002286 178 YSDSLEFYKRALQVHP-S---CPGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (942)
Q Consensus 178 ~~~A~~~~~~~l~~~p-~---~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (942)
|+--+.+++....... + ..+..-+..+.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888887655211 1 1234567788888888887 7777777777777664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.028 Score=54.94 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHH
Q 002286 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 639 (942)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y 639 (942)
+.-+.-+.-....|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-.......... ..+.+.+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~--l~a~i~l 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG--LQAQIEL 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH--HHHHHHH
Confidence 44455566678889999999999999999999999999999999999999999999986433322211111 1111101
Q ss_pred HHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 002286 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719 (942)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 719 (942)
...+ ....+ ...+.+.+..+|+|..+...+|..+...|+.+.|.+.+-.++..+.+. .+..+.-.
T Consensus 213 l~qa-----------a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~ 277 (304)
T COG3118 213 LEQA-----------AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARKT 277 (304)
T ss_pred HHHH-----------hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHHH
Confidence 1110 11111 234556677889999999999999999999999999888888876432 44555555
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 002286 720 LAHVYFAQGNFALAMKMY 737 (942)
Q Consensus 720 la~~~~~~g~~~~A~~~~ 737 (942)
+-.++...|.-+.+...|
T Consensus 278 lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 278 LLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 555555555333333333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00053 Score=43.72 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
.+++.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.11 Score=53.75 Aligned_cols=128 Identities=17% Similarity=0.093 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
.+|+...|-.-+..+++..|.+|......+.+....|.|+.|...+..+-..-.....+...+-...+..|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 35777788888888999999999999999999999999999999887776554444556666677888999999999998
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.-++...-++ +.+....+...-.+|-+++|...|++.+.++|.....|
T Consensus 381 ~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 381 EMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 8888765555 34344445556678899999999999999988644433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.26 Score=52.86 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHh-hhCCC--
Q 002286 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 747 (942)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~-- 747 (942)
.......+...+.+..+.|+++.|...+.++....+.... ..|.+.+..+..+...|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3445667888999999999999999999999886532211 2688999999999999999999999998888 22111
Q ss_pred ----------------------CC-------HHHHHHHHHHHHHc------ccHHHHHHHHHHHHHhCCCChhhHhhHHH
Q 002286 748 ----------------------TD-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (942)
Q Consensus 748 ----------------------~~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~ 792 (942)
.. ..++..+|...... +..+++.+.|..+.+..|+....++++|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 01 44555666666666 77888999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 002286 793 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833 (942)
Q Consensus 793 ~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 833 (942)
.+.......-..... .++ .....-+..|++.|-+=...+
T Consensus 301 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 301 FNDKLLESDPREKEE-SSQ-EDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HHHHHHHhhhhcccc-cch-hHHHHHHHHHHHHHHHHHhhC
Confidence 766665422211111 111 233444555666664444333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.53 Score=51.39 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=153.2
Q ss_pred eEEEeCCCCCCChhHHHHHHH--------hccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHH
Q 002286 14 EVRVALDQLPRDASDILDILK--------AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85 (942)
Q Consensus 14 ~~~~~~~~lp~~~~~~~~~l~--------~~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (942)
+|++-+..+. |...|++... ++.+.++.|-.+|..-.+.-.++.|...|-+.-. |.+ +..
T Consensus 659 ii~~~ikslr-D~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d------Y~G-----ik~ 726 (1189)
T KOG2041|consen 659 IIEVMIKSLR-DVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD------YAG-----IKL 726 (1189)
T ss_pred EEEEEehhhh-hHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc------ccc-----hhH
Confidence 4555555544 4445554433 2346678999999999998899999988877543 222 223
Q ss_pred HHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH
Q 002286 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVP 163 (942)
Q Consensus 86 ~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~ 163 (942)
.-.|+.++...-+... ..---|.|++|.+.|-.+.+.| ....++...|+|-...++++..-.-+. .-..
T Consensus 727 vkrl~~i~s~~~q~ae-i~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~ 797 (1189)
T KOG2041|consen 727 VKRLRTIHSKEQQRAE-ISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKED 797 (1189)
T ss_pred HHHhhhhhhHHHHhHh-HhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHH
Confidence 3344444432211110 0112356668888887765543 223456677888776666654321111 1246
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
++..+|..+.....+++|.++|...- -.-+...|++.+.+|++- +.....-|++...+-.+|..+..
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHh
Confidence 88889999999999999999987642 133467788888777653 33344567777788888888888
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (942)
.|- -++|.+.|-+. ..|.-. .......+++.+|..+.++.. -|.........+.-+...++.-+
T Consensus 865 vGM---C~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 865 VGM---CDQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred hch---HHHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHH
Confidence 877 77777766442 122111 112233445555555544321 12111222223334445555666
Q ss_pred HHHHHHHH
Q 002286 324 AGLYYMAS 331 (942)
Q Consensus 324 A~~~~~~a 331 (942)
|++.++++
T Consensus 929 aIe~~Rka 936 (1189)
T KOG2041|consen 929 AIEKDRKA 936 (1189)
T ss_pred HHHHhhhc
Confidence 66655554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00064 Score=43.33 Aligned_cols=31 Identities=35% Similarity=0.653 Sum_probs=17.4
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+++.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3555555555566666666666665555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00093 Score=42.57 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=17.4
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+++.+|.+++.+|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455555555566666666666655555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.68 Score=51.16 Aligned_cols=253 Identities=14% Similarity=0.133 Sum_probs=138.0
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHH-HHhhhhhccccch
Q 002286 537 QIHDTVAASVLYRLILFKY--QDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL-SMLGDLELKNDDW 609 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~--p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~l~~~~~~~g~~ 609 (942)
..|+..+|.+++.-.+-.. |.. ..+++.+|.++...|+- ..+++...++...+.+..+ ..||.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4577778888777666442 111 45778888888777765 7788877777655333211 1234334444432
Q ss_pred HHHHHHHHHhhc---cCCC-CchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHH
Q 002286 610 VKAKETFRAASD---ATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE-LYTRVIVQHTSNLYAANGAGVV 684 (942)
Q Consensus 610 ~~A~~~~~~~~~---~~~~-~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~la~~ 684 (942)
. .+.|+++-. .+.. ....+-++||.+ -... . -.+|++ ++.-+-+..-..+.--.++|..
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~-mlGt------------~-~~eaiedm~~Ya~ETQHeki~RGl~vGia 510 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLL-MLGT------------A-NQEAIEDMLTYAQETQHEKIIRGLAVGIA 510 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhH-hhCc------------C-cHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Confidence 1 223333322 2211 122344556654 3222 1 223333 2222222222233334556777
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHH--HHHHHHHHHHH
Q 002286 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ--ILLYLARTHYE 762 (942)
Q Consensus 685 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~l~~~~~~ 762 (942)
+...|+-++|-.+.+++..... + .-...-.+.+|..|...|+..--..++.-+++. .+.|+. +-..+|.+++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkd-p--ilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~- 584 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKD-P--ILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLF- 584 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCc-h--hhhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEe-
Confidence 7888888899999988876331 0 012344678889999999885555555554553 233333 3334444444
Q ss_pred cccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 002286 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 832 (942)
Q Consensus 763 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~ 832 (942)
.+.+....+..-.-+. .|+.++|..|+++. +-+|-.++.+|+.+++-|-.+
T Consensus 585 -~dp~~~~s~V~lLses--~N~HVRyGaA~ALG----------------IaCAGtG~~eAi~lLepl~~D 635 (929)
T KOG2062|consen 585 -RDPEQLPSTVSLLSES--YNPHVRYGAAMALG----------------IACAGTGLKEAINLLEPLTSD 635 (929)
T ss_pred -cChhhchHHHHHHhhh--cChhhhhhHHHHHh----------------hhhcCCCcHHHHHHHhhhhcC
Confidence 4666666665544433 47889999888755 344455566666666665544
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.62 Score=49.14 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHH
Q 002286 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (942)
Q Consensus 180 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 259 (942)
.-..+|+.++...+.+ ...|........+.+.+.+-..+|..++..+|++++.|+.-+...+..+. +++.|...+.+
T Consensus 89 rIv~lyr~at~rf~~D-~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD-VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--NIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--chHHHHHHHHH
Confidence 4567899999998888 67777777777777779999999999999999999999999987777665 38889999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 002286 260 AFEIYPYCAMALNYLA 275 (942)
Q Consensus 260 ~~~~~p~~~~~~~~la 275 (942)
+++.+|+++..|...-
T Consensus 166 gLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYF 181 (568)
T ss_pred HhhcCCCChHHHHHHH
Confidence 9999999998876543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0058 Score=50.04 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCC
Q 002286 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (942)
Q Consensus 46 ~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p 125 (942)
.|..++++|+.-+|+++++..+....+.. ...-++..-|.++..++....+...|.-.+-.++..|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~------~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDE------SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCC------chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 57889999999999999999887654321 112355666888888887777777778888888888888888888
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 157 (942)
..+..++.+|.-+-..--|+++....++++..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88778888877777777777777777777654
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.074 Score=55.49 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
+.-+.+|++|++.+|++ ..++..+-.+..+..+.+....-|++++..+|++...|...-......-..-.+......|.
T Consensus 48 E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45567788888888877 66677777777777788888888888888888888777665544433211111555555665
Q ss_pred HHHH
Q 002286 259 RAFE 262 (942)
Q Consensus 259 ~~~~ 262 (942)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.053 Score=49.28 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
..+...|......|+...++..+.+++.....+.-..... ..-.......+... ...+...++..
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~------~~~~~~~l~~~ 71 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL------YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3344456667778899999999999987553221111000 00111122222222 24567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHc-CCCCCHH
Q 002286 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA-GEEVPIE 449 (942)
Q Consensus 386 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~ 449 (942)
+...|++++|+..+.+++..+|.+..++..+..++ ..|+...|+..|++....+... |..+++.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999 9999999999999998887753 5444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=1.2 Score=50.17 Aligned_cols=260 Identities=12% Similarity=0.018 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH---HcCCHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKARQA 219 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~ 219 (942)
.-++=+..++.-+..++.+......+..++...|++++-...-..+.+..|.+ +.+|.....-.. ..++...+...
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~-~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLP-PHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccCcchhHHHHH
Confidence 33444444555555555556666666666666666666555555555556655 444443332222 12445555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002286 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~ 299 (942)
|++++. +-.++..|...+......+. .+...++++....+|.+++....
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~------------------------------~~~~~~d~k~~R~vf~ral~s~g 221 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGN------------------------------VAKKSEDYKKERSVFERALRSLG 221 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccc------------------------------cccccccchhhhHHHHHHHhhhh
Confidence 555553 23334444444433333222 11223344445555555544322
Q ss_pred CCCc----hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh----hhhcHH---HHHHHcCChHHHHHH----
Q 002286 300 HGPT----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF----PYYGLG---QVQLKLGDFRSALTN---- 364 (942)
Q Consensus 300 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~la---~~~~~~g~~~~A~~~---- 364 (942)
..-. ..+.+...-..|...-..++-+.++...+.. |.... .+.... .......+++.|...
T Consensus 222 ~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~----~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~ 297 (881)
T KOG0128|consen 222 SHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ----PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKI 297 (881)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHH
Confidence 2111 1122333333333333445555555555531 11111 011111 111223344444444
Q ss_pred ---HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--hcCCHhHHHHHHHHHHHH
Q 002286 365 ---FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTARTL 438 (942)
Q Consensus 365 ---~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~ 438 (942)
++..+...|.....|..+.......|+...-...+++++.-.+.+...|+..+... ..+-...+...+.+++..
T Consensus 298 ~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~ 376 (881)
T KOG0128|consen 298 LFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS 376 (881)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC
Confidence 33334444555556677777777888888888888888888888888888888766 455555555555555443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0062 Score=59.80 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
..+-.-|.-|++..+|..|+.+|...++..-.+ ...|...|-+.+..|+|..|+.-+.+++..+|.. .-.++.-+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhh
Confidence 344556888888888888888888888764333 4567788888888888888888888888888888 66677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 205 LCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
.|++.+.++.+|..+.+..+..+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888888887665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0027 Score=40.07 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
+++.+|.++.+.|++++|+..|++++..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.016 Score=48.95 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred CchhHHHHHHHHHHHhc---CHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 712 QMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
-.....++++|++.... +..+.|.+++..++..+....-+.+|+|+..+++.|+|+.++++....++..|+|+.+.-
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35678899999998765 566789999999984323333788999999999999999999999999999999988665
Q ss_pred hHHHHHHHHHH
Q 002286 789 DAGVAMQKFSA 799 (942)
Q Consensus 789 ~la~~~~~~~~ 799 (942)
---.+..++..
T Consensus 110 Lk~~ied~itk 120 (149)
T KOG3364|consen 110 LKETIEDKITK 120 (149)
T ss_pred HHHHHHHHHhh
Confidence 54444444433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0022 Score=40.47 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (942)
++++++|.++...|++++|+..|+++++.||++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467888888888889999999999988887753
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.3 Score=52.59 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHhcCCCCCchhhh
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPY 345 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~~~~~~~~~~~ 345 (942)
..-.++...+.|+.|+..|+++....+.....-++.+..|.....+ | .+++|+.-|++.- ..+..+.-|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHH
Confidence 3456777788899999999998887766666677888888776643 2 4777777777665 557777779
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
.+.|.+|...|++++-++++.-+++.+|.+|..-...-.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 9999999999999999999999999999887654443333
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.35 Score=46.35 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh-HHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG-AALD 430 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~-~A~~ 430 (942)
+...-..|+.+.+.++..+|.+..+|...-.++..++ +..+-++++..++.-+|.+..+|...-.+. ..|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3344455555555555555555555555444444433 445555555555555555555555544444 444444 3333
Q ss_pred HHHHHH
Q 002286 431 AFKTAR 436 (942)
Q Consensus 431 ~~~~a~ 436 (942)
....++
T Consensus 135 f~~~~l 140 (318)
T KOG0530|consen 135 FTKLML 140 (318)
T ss_pred HHHHHH
Confidence 333333
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.39 Score=46.45 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=80.9
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhH
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (942)
...++.-+..+...++........ ....+-..+..++++.|+|.+|+......+..-.
T Consensus 98 ~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK--------------------- 156 (421)
T COG5159 98 SDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELK--------------------- 156 (421)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---------------------
Confidence 344555555555555544332110 0124445678889999999999999888776211
Q ss_pred hhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH-----hCCCcHHHH--HHHHHHHHHcC
Q 002286 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAY--LRLAAIAKARN 573 (942)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~--~~l~~~~~~~~ 573 (942)
..+..+.-.+++..-..+|....+..++...+..+-. -+|....+- +.-|...+...
T Consensus 157 ----------------k~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 157 ----------------KYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred ----------------hhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Confidence 1114455666777778888888888887776665543 234332222 22344566778
Q ss_pred ChhHHHHHHHHHHhhc
Q 002286 574 NLQLSIELVNEALKVN 589 (942)
Q Consensus 574 ~~~~A~~~~~~~l~~~ 589 (942)
+|..|..+|-++++-.
T Consensus 221 dyktA~SYF~Ea~Egf 236 (421)
T COG5159 221 DYKTASSYFIEALEGF 236 (421)
T ss_pred cchhHHHHHHHHHhcc
Confidence 8999999998887754
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=1.4 Score=48.86 Aligned_cols=275 Identities=15% Similarity=0.075 Sum_probs=136.0
Q ss_pred HHcCChHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH-HHHHHHH-hcCC
Q 002286 353 LKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF-IDLGELL-ISSD 424 (942)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~-~~~~ 424 (942)
+..|+..+|.+.+...+-.. |. ..-+++.+|.++...|+- ..+++...++...+.+..+ ..||.-+ ..|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 35788888888888776442 11 234888899998888875 7788877776654332221 1122222 2222
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (942)
.-.+.|++...............+-..+|.+....++.+--.+.+.-+.+
T Consensus 446 --a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~E---------------------------- 495 (929)
T KOG2062|consen 446 --ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQE---------------------------- 495 (929)
T ss_pred --ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhh----------------------------
Confidence 22344555544433321111112334445554444443332223333322
Q ss_pred hhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-CCc-HHHHHHHHHHHHHcCChhHHHHHH
Q 002286 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDY-VDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~-~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
..-....--...|..+...|+-++|..+.++++.-. |-- ....+.++..|.-.|+...-..++
T Consensus 496 ---------------TQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 496 ---------------TQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred ---------------hhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 111122233344556666677778888777776532 211 234456666677777766555554
Q ss_pred HHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchh-HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 583 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
.-++.--.++..-....+.-+.-..+++....+..-..+.+..+-.| +.+.+|-. +.. .-..+|+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIa-CAG-------------tG~~eAi 626 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIA-CAG-------------TGLKEAI 626 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhh-hcC-------------CCcHHHH
Confidence 44443333333333333333334445555555555444444332222 33344433 222 2245666
Q ss_pred HHHHHHHhcCCCCH---HHHHHHHHHHHhcC
Q 002286 662 ELYTRVIVQHTSNL---YAANGAGVVLAEKG 689 (942)
Q Consensus 662 ~~~~~~l~~~p~~~---~a~~~la~~~~~~g 689 (942)
.+++.+.. ||.+. .|+..+|.++.++.
T Consensus 627 ~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 627 NLLEPLTS-DPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHhhhhc-ChHHHHHHHHHHHHHHHHHhcc
Confidence 66666555 55533 24555555555443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.22 Score=51.68 Aligned_cols=173 Identities=19% Similarity=0.125 Sum_probs=116.2
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc----cc
Q 002286 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----ND 607 (942)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g 607 (942)
...+++..|...+..+-.. ....+...++.++.. ..+..+|..+|..+ ....++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 3456777788887776652 223677777777765 34678899999844 446678888999999877 44
Q ss_pred chHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 002286 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (942)
Q Consensus 608 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 687 (942)
+..+|...|.++..........+...++.+ |.... .... -..+...|...|.++-... ++.+...+|.+|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~~----~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QALA----VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhhc----ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 899999999999988754223446667776 65541 0000 0033457777777776665 66677777776654
Q ss_pred ----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc
Q 002286 688 ----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (942)
Q Consensus 688 ----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g 728 (942)
..++.+|..+|.++.+.. + +...++++ +++..|
T Consensus 200 G~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 200 GLGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 237778888888887765 3 67777777 665555
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.29 Score=50.82 Aligned_cols=189 Identities=18% Similarity=0.176 Sum_probs=133.6
Q ss_pred HHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc----ccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHh
Q 002286 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644 (942)
Q Consensus 569 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~ 644 (942)
....+++..+...+..+-.. .++.....++.+|.. ..+...|...|..+.... ...+.+.||.+ |.....
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~-~~~G~g 124 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLM-YANGRG 124 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHH-HhcCCC
Confidence 34566777888888777652 233566667776654 346888999999665543 55667778888 766421
Q ss_pred hhhcChhHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHhcCCCCCCchhH
Q 002286 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKG-------QFDVSKDLFTQVQEAASGSVFVQMPDV 716 (942)
Q Consensus 645 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (942)
.. .+..+|..+|.++....-.. ..+...++..+..-+ +...|...|.++-... ++.+
T Consensus 125 -v~-------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~~~a 189 (292)
T COG0790 125 -VP-------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------NPDA 189 (292)
T ss_pred -cc-------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------CHHH
Confidence 11 58899999999999886444 455788888887642 3347899999988864 6889
Q ss_pred HHHHHHHHHHh----cCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcc---------------cHHHHHHHHHHHH
Q 002286 717 WINLAHVYFAQ----GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE---------------QWQDCKKSLLRAI 777 (942)
Q Consensus 717 ~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~al 777 (942)
.+++|.+|..- .++.+|+.+|.++... .+ ....+.++ +++..| +...|..++..+.
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 264 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH
Confidence 99999888653 4899999999999986 22 78888888 777766 5555566665555
Q ss_pred HhCCCC
Q 002286 778 HLAPSN 783 (942)
Q Consensus 778 ~~~p~~ 783 (942)
...+..
T Consensus 265 ~~~~~~ 270 (292)
T COG0790 265 ELGFDN 270 (292)
T ss_pred HcCChh
Confidence 554433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.62 E-value=3.6 Score=52.44 Aligned_cols=327 Identities=12% Similarity=0.049 Sum_probs=178.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 273 YLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 273 ~la~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
.++.+-++.+.|..|..++++-. ..+... .....++.+-.+|...++++.-......-. ..+. .......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~s----l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPS----LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCcc----HHHHHHH
Confidence 57888889999999999998862 222222 223445555558888888887766665321 1122 3445566
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--hcCCHhHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAAL 429 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~ 429 (942)
....|++..|..+|+.+++.+|+....+...-......|.+...+...+-.....++...-+..++.-- ..++++.-.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 777899999999999999999998777777777778888888888877777666666666666665533 556665544
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-----HHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh--
Q 002286 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES-----AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF-- 502 (942)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 502 (942)
.+.. . ++.....+.. +|.+.....+-+. .++..+..+-.+....-.++ .........+..
T Consensus 1539 ~~l~------~--~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~----Sy~~~Y~~~~kLH~ 1605 (2382)
T KOG0890|consen 1539 SYLS------D--RNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEG----SYVRSYEILMKLHL 1605 (2382)
T ss_pred hhhh------c--ccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccc----hHHHHHHHHHHHHH
Confidence 4322 0 0000011110 3333333222111 11111111100000000000 000000000000
Q ss_pred -hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHH---HhCC----CcHHHHHHHHHHHHHcCC
Q 002286 503 -KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---FKYQ----DYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 503 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p----~~~~~~~~l~~~~~~~~~ 574 (942)
.+..............+....+..-|.+....-....+..+-+-.+++.+ ..+| ...++|+..|.+....|.
T Consensus 1606 l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1606 LLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 00000000000000000111111122222221111122333333333322 2233 337899999999999999
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccC
Q 002286 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 623 (942)
++.|...+-++.+.. -+.+....|..+...|+...|+..++..++..
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999998887766 57788889999999999999999999999654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.072 Score=56.12 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=104.8
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 169 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p------------~~---~~~~~~~a 169 (942)
..++.+|.+.++++.++.++..+|+...|.+++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999988888621 11 12 23456667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCC-CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 243 (942)
..+.++|-+..|+++.+-++.++|. +|-.+++.+-....+.++++--+..++........ -+...+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7888899999999999999999998 77777777777778888888777777765442111 12334444555555
Q ss_pred hccH------------HhHHHHHHHHHHHHHhCCCC
Q 002286 244 ANEA------------AGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 244 ~~~~------------~~~~~A~~~~~~~~~~~p~~ 267 (942)
.++. ...+.|-..+.+++...|.-
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 5441 11266777777777766643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.041 Score=49.99 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEADRDN----------------------VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 192 (942)
|......|+...++..+.+++...... ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 444445556666666666665543221 1223333444444444444444444444444
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (942)
|-+ ..++..+..++...|+...|+..|+++
T Consensus 93 P~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 93 PYD-EEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 444 444444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.2 Score=47.90 Aligned_cols=221 Identities=14% Similarity=0.149 Sum_probs=126.4
Q ss_pred CChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cC-cHHHHHHHHHHH-hcCC
Q 002286 356 GDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKID-----PR-DAQAFIDLGELL-ISSD 424 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~-~~~~~~~la~~~-~~~~ 424 (942)
.++++|+..|++++++.+... .++..+..++.++|++++-...|.+++..- .+ .......+-... ...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 467778888888887776543 366667777888888887777777766421 11 111222222222 4444
Q ss_pred HhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
.+--...|+..+....+.... .-...-..+|.+++..|+|..-...+++.-..+....-
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG-------------------- 180 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG-------------------- 180 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC--------------------
Confidence 555556666666655543221 11234467899999999998888888777654321000
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcH--H----HHHHHHHHHHHcCChhH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV--D----AYLRLAAIAKARNNLQL 577 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~----~~~~l~~~~~~~~~~~~ 577 (942)
............++..-..+|..+.+...-..+|++++.+...-+ . ..-.-|.++.+.|.+++
T Consensus 181 -----------edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 181 -----------EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEK 249 (440)
T ss_pred -----------chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHH
Confidence 000001122334555556677777888888888888887543221 1 11222445677788888
Q ss_pred HHHHHHHHHhhcCCCh-----h--HHHHhhhhhcccc
Q 002286 578 SIELVNEALKVNGKYP-----N--ALSMLGDLELKND 607 (942)
Q Consensus 578 A~~~~~~~l~~~p~~~-----~--~~~~l~~~~~~~g 607 (942)
|..-|-++++....+. . -+..+++.+++.|
T Consensus 250 AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 250 AHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 8887777776543221 1 2344555555544
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0039 Score=61.54 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=77.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
.+.-.+..|.++.|++.|..++.++|.....+..++.++...++...|+.-|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 44556667788888888888888888888888888888888888888888888888888888 55566778888888888
Q ss_pred HHHHHHHHHHHhhCCC
Q 002286 214 GKARQAFQRALQLDPE 229 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~ 229 (942)
.+|...+..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 8888888888887643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0035 Score=40.35 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
+|.+||.+|..+|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777775543
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.1 Score=44.93 Aligned_cols=247 Identities=13% Similarity=0.097 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hC--cCcHHHHHHHHHHH--hcCCHhHHHHHHHHHHHHHHHcCCCC-CHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAK---ID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEV-PIE 449 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~---~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~ 449 (942)
....+|.+|.+.|+.++-.......-. .- +........+...+ ..+..+.-+..+...+++........ ...
T Consensus 50 ~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~ 129 (411)
T KOG1463|consen 50 SILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQS 129 (411)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445666666666666554443333221 11 11122222233322 33445555566666666544321110 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHH
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (942)
+-..+..+|+..++|.+|+......+..-. ..+..+.-..+..
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L~rElK-------------------------------------KlDDK~lLvev~l 172 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDLLRELK-------------------------------------KLDDKILLVEVHL 172 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------------------------------------hcccccceeeehh
Confidence 445678899999999999999888776211 0113344555666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh-----CCCcH--HHHHHHHHHHHHcCChhHHHHHHHHHHhhcC---CChhHHHH-
Q 002286 530 NLARLLEQIHDTVAASVLYRLILFK-----YQDYV--DAYLRLAAIAKARNNLQLSIELVNEALKVNG---KYPNALSM- 598 (942)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~- 598 (942)
.-..+|....+..+|...+..+-.. .|... ..-+.-|.++....+|..|..+|-++++-+. +++.+...
T Consensus 173 lESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sL 252 (411)
T KOG1463|consen 173 LESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSL 252 (411)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHH
Confidence 6677888888888888877766542 12221 2223335556667899999999999887542 22333322
Q ss_pred --hhhhhccccchHH--HHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 002286 599 --LGDLELKNDDWVK--AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (942)
Q Consensus 599 --l~~~~~~~g~~~~--A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (942)
+-.+-...+..++ ++-.-+.+++ +.+++..+...++.. +.+. .-.+|..|+..|..-+..||-
T Consensus 253 KYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~AmkavAeA-~~nR----------SLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 253 KYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAMKAVAEA-FGNR----------SLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHHHHHHHH-hcCC----------cHHHHHHHHHHhHHHHhcChH
Confidence 2222223344433 3333344445 455567776666655 3322 117889999999888877764
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.007 Score=59.84 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
+++|+..|..++.++|.....+..++.+++..++...|+.-|..++.++|+....+-..+.....+|++.+|...+..+.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 44777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCC
Q 002286 190 QVHPS 194 (942)
Q Consensus 190 ~~~p~ 194 (942)
+++-+
T Consensus 210 kld~d 214 (377)
T KOG1308|consen 210 KLDYD 214 (377)
T ss_pred hcccc
Confidence 66543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0057 Score=38.85 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 781 (942)
+++.+|.+|...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555554
|
... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.6 Score=45.67 Aligned_cols=128 Identities=14% Similarity=0.063 Sum_probs=92.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (942)
....|+.-.|-.-+..++...|..|......+.+....|+|+.|...+.-+-..-... ......+-.....+|+++.|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHHH
Confidence 4456788888888888888888888888888899999999999988877655443332 222333556667788888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHH
Q 002286 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (942)
Q Consensus 218 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 269 (942)
..-.-.+...-.+++....-+......|- ++++...+++.+.++|....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhcc
Confidence 88888777666666665544444444454 88888888888888876543
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.37 E-value=2.5 Score=47.79 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhc
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 604 (942)
..+..+.......|++..-...+++++...+.+...|+..+...- ..+-...+...+.+++...|-...+|...-..+.
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 344444455555666666666666666666666666666554432 2333334444555555555544444433222222
Q ss_pred cccch-HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHh-hhhc----ChhHHHHHHHHHHHHHHHHHhcC-CCCHHH
Q 002286 605 KNDDW-VKAKETFRAASDATDGKDSYATLSLGNWNYFAALR-NEKR----APKLEATHLEKAKELYTRVIVQH-TSNLYA 677 (942)
Q Consensus 605 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~-~~~~----~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a 677 (942)
+.+.. ..-...+.+.+... +.+.+- |+.-.+ .... .-..-+..+..|...+....... -.....
T Consensus 393 R~re~~~vI~~~l~~~ls~~--------~~l~~~-~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~ 463 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSMT--------VELHND-YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEV 463 (881)
T ss_pred hcCcchhhHHHHHHHHHHHH--------HHHHHH-HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 22211 11111222221110 001111 111100 0000 00012356777777776665542 112234
Q ss_pred HHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHH
Q 002286 678 ANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 755 (942)
Q Consensus 678 ~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 755 (942)
+...|.+.+ -.++.+.|+.+.+.+.....+ .....|+.....-...|+...|..++..|+..-..+.+ -.++..
T Consensus 464 ~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~ 539 (881)
T KOG0128|consen 464 LQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEF 539 (881)
T ss_pred HHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHH
Confidence 455566655 457888999888888765431 22337888888888889999999999988886444443 455555
Q ss_pred HHHHHHHcccHHHHHHHH
Q 002286 756 LARTHYEAEQWQDCKKSL 773 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~ 773 (942)
+-+.....|.++.+....
T Consensus 540 ~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 540 FRRFEREYGTLESFDLCP 557 (881)
T ss_pred HHHHHhccccHHHHhhhH
Confidence 556666667766655443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.023 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+.++.++.++++.|++++|+++.+.+++..|+|..+.--...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678999999999999999999999999999998766544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0062 Score=38.67 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=19.3
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+++.+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666666666666666666666653
|
... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.052 Score=48.30 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..++....+-...++.+++..++..+--+.|..+..-..-|.++...|+|.+|+.+++.+....|.. +...-.++.|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3455666677777888888888888888889888888888999999999999999998887777777 666777888888
Q ss_pred HcCCHH
Q 002286 209 KLGQLG 214 (942)
Q Consensus 209 ~~g~~~ 214 (942)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888765
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.43 Score=49.80 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h---cCCHhHHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I---SSDTGAALDAFK 433 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~---~~~~~~A~~~~~ 433 (942)
.+.-+.+|+++++.+|++...+..+-.+..+..+.++....+++++..+|+++..|..+-... . .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999998877755 2 235778889999
Q ss_pred HHHHHHHHcCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 002286 434 TARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (942)
Q Consensus 434 ~a~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 478 (942)
+++.......... -..++..+.....+.|-.+.|+..++..++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888776543221 12556677778889999999999999999864
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.24 Score=44.10 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 002286 655 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~ 732 (942)
+..++|+..|..+-+.+-. -+.+....+.+..+.|+...|+..|..+-...|-+ .+....+...-+..+...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHHHhccccHHH
Confidence 6677888888777665544 34466777889999999999999999997765311 11122345566788889999988
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHH
Q 002286 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (942)
Q Consensus 733 A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 795 (942)
-..-.+..-. ..++-...+.-.||.+-++.|++..|+++|..+.. +.+.|.-.-+-+.++.
T Consensus 151 V~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 151 VSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 7766554332 22333377888999999999999999999999776 4444554445555433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=3.1 Score=45.85 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (942)
+++|...|-.+-+. + .-...+...|+|-.+.++++.--. ..++.....++..+|..+..+..+++|.++|.
T Consensus 750 feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777543221 1 123455667788777777664322 12334456789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
..-. .-+++.+++....|++-. .+...-|++...+-.+|..+...|.-++|.+.|-+.- .|..
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka 883 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA 883 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH
Confidence 7642 224567777777776543 3444459999999999999999999999998886531 2321
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002286 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (942)
Q Consensus 410 ~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 474 (942)
+ +..+-..+++.+|.+..++.. -+.-..+....+.-+...++.-+|++..+++
T Consensus 884 A-----v~tCv~LnQW~~avelaq~~~-------l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 884 A-----VHTCVELNQWGEAVELAQRFQ-------LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 122225566777666544321 1111123333344556677788888877776
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.81 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhc
Q 002286 679 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (942)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (942)
+++..++..-|.+. -|+++...+|
T Consensus 750 FGlTKVFFr~GKFa----EFDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFA----EFDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchH----HHHHHHhcCH
Confidence 34455555666654 3666666555
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.076 Score=51.12 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=64.7
Q ss_pred cCCchHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHhcCHH-------HHHHHHHHHHhhhCCCCC----HHHHH
Q 002286 688 KGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFA-------LAMKMYQNCLRKFYYNTD----AQILL 754 (942)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~~~~~~----~~~~~ 754 (942)
...+++|+..|.-++-... +......+.++..+||+|...|+.+ .|.+.|++++.....+.. ..+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3455666666655544321 0001134667888999999999844 566666666655433221 67889
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 755 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
.+|.+.++.|++++|+++|.+++...-.+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998875443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.9 Score=48.67 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhHHHHHHHcCCHHHHHHHHHH
Q 002286 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKLGQLGKARQAFQR 222 (942)
Q Consensus 146 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (942)
...+.+.......|+++...+..|..+...|+.+.|+..++..+. +.. ..-.++.+|.++..+.++..|...+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444556788877778888888888887777777776665 221 123456677777777888888888887
Q ss_pred HHhhCCCCHHHHHHHH
Q 002286 223 ALQLDPENVEALVALA 238 (942)
Q Consensus 223 al~~~p~~~~~~~~l~ 238 (942)
....+.-..-.+..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 7766544333333333
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=56.35 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002286 870 EQQNRQRQEAARQAAL 885 (942)
Q Consensus 870 e~~~~~~~~~~~~~~~ 885 (942)
++++|+++|.+||...
T Consensus 356 ekkererqEqErk~ql 371 (1118)
T KOG1029|consen 356 EKKERERQEQERKAQL 371 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.4 Score=42.48 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=84.7
Q ss_pred HHHHHHHhhccHHhHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cc--hh
Q 002286 236 ALAVMDLQANEAAGIRKGMEKMQRAFEI----YPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG--PT--KS 305 (942)
Q Consensus 236 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~--~~--~~ 305 (942)
.+..+|...++ |.+|+......++- +.. -..+...-...|+...+..+|...+..+....+.- |. .+
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 44555555555 66666655544432 211 12344444566666666666666665554332211 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh---hhcHHHHHHHcCChHHHHHH--HHHHHHhCCCcHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN--FEKVLEIYPDNCETLK 380 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~--~~~~l~~~p~~~~~~~ 380 (942)
..-..-|..+....+|..|..+|-++.+.+..-.+.+.+ +-.+..+-+..+..++--.. -..+++......+++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 222333555555567777777777777644332222222 22223333444444443333 2334444455566666
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCc
Q 002286 381 ALGHIYVQL--GQIEKAQELLRKAAKIDP 407 (942)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~~~~~l~~~p 407 (942)
..+..+.+. .+|+.|+..|..-+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 666666543 466666666666555544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.044 Score=38.60 Aligned_cols=42 Identities=21% Similarity=0.069 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 171 (942)
.++.+|..+++.|+|++|..+.+.+++.+|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467778888888888888888888888888887776555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.17 Score=45.09 Aligned_cols=83 Identities=14% Similarity=0.025 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
+.+..++.-+--..|..+..-+.-|.+++..|+|.+|+.+|+.+....|..+.+--.++.|++..|+..== .+-..+++
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr-~~A~evle 105 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR-RYADEVLE 105 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH-HHHHHHHh
Confidence 38888888888889999999999999999999999999999999999999999999999999988875421 12334444
Q ss_pred hCCC
Q 002286 191 VHPS 194 (942)
Q Consensus 191 ~~p~ 194 (942)
..++
T Consensus 106 ~~~d 109 (160)
T PF09613_consen 106 SGAD 109 (160)
T ss_pred cCCC
Confidence 4443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.14 Score=41.36 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chhhHhhHHHHHHHcCC
Q 002286 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 148 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~la~~~~~~g~ 212 (942)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+|+. ....+-.+-.++-.+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555556666666666666666666666666666666666655544 23334444444444444
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.17 Score=41.65 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002286 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (942)
Q Consensus 253 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~ 296 (942)
+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 34444444444555555555555554444455555555554443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=47.89 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhh------------cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 002286 109 HFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------- 157 (942)
Q Consensus 109 ~~~~A~~~~~~a~~------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------- 157 (942)
-|.+|...|.-+.. ..|.+.+.++.++.+...+|+.+-|.....+++-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 45566666655543 35777889999999999999998887777776531
Q ss_pred --CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-CchhhHhhHHHHHHHcCCHHHHHHHHHHH-----Hhh
Q 002286 158 --DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQL 226 (942)
Q Consensus 158 --~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~ 226 (942)
.|.|- .+++.....+.+.|-+..|.++++-++.++|. +|-.+.+.+-....+..+|.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 12232 23444455667789999999999999999998 65565665655666677777666666655 223
Q ss_pred CCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 227 ~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
-|+ ...-..++..++.......-..|...+.+|+...|.
T Consensus 413 ~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 343 334456667777766655577888889999888874
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.7 Score=40.99 Aligned_cols=164 Identities=17% Similarity=0.123 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhh-
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPY- 345 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~- 345 (942)
..++..++..|.|.+|+.+....+. ..++.+.....+..-..+|+...+..++...+..+-...+ -.|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567888999999999998887763 3445566677788888889988888888877776653211 112222221
Q ss_pred -hcHHHHHHHcCChHHHHHHHHHHHHhCC---CcHHHHH---HHHHHHHHcCCHHHHHHHHH--HHHH-hCcCcHHHHHH
Q 002286 346 -YGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLK---ALGHIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFID 415 (942)
Q Consensus 346 -~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~---~la~~~~~~g~~~~A~~~~~--~~l~-~~p~~~~~~~~ 415 (942)
..-|.......+|..|..+|-.+++-.. .+..+.. .+-..-...+..++....+. ..++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2224455667789999999988887543 2333332 22222233344444433332 2222 23445667777
Q ss_pred HHHHH---hcCCHhHHHHHHHHH
Q 002286 416 LGELL---ISSDTGAALDAFKTA 435 (942)
Q Consensus 416 la~~~---~~~~~~~A~~~~~~a 435 (942)
.+..+ ...+|..|+..|..-
T Consensus 289 vaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHH
Confidence 77777 344666776666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.028 Score=36.12 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 780 (942)
++..||.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.29 Score=41.65 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHH-hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 161 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
.....+.+|.++.... +..+.+.+++..++ ..|.......+.++..++++++|++++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4566777888887664 46678889998886 5676667777889999999999999999999999999998887554
Q ss_pred HHH
Q 002286 237 LAV 239 (942)
Q Consensus 237 l~~ 239 (942)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.1 Score=40.17 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=130.6
Q ss_pred cCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcC
Q 002286 389 LGQIEKAQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKG 462 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g 462 (942)
..+.++|+..|++++++.|.-. .++-.+..+. ..+++++-...|.+.+......-.. .+....+.+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3578999999999999987653 3455566677 8999999999999988776553211 12233344433333444
Q ss_pred CHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHH
Q 002286 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542 (942)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 542 (942)
+.+--..+|+..++.-. + .........+...+|.+|...|.+.
T Consensus 120 ~m~LLQ~FYeTTL~ALk---------------------------------d----AKNeRLWFKTNtKLgkl~fd~~e~~ 162 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALK---------------------------------D----AKNERLWFKTNTKLGKLYFDRGEYT 162 (440)
T ss_pred hhHHHHHHHHHHHHHHH---------------------------------h----hhcceeeeeccchHhhhheeHHHHH
Confidence 44444455554443100 0 0011122334456899999999999
Q ss_pred HHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC--hhH----HHHhhhhhc
Q 002286 543 AASVLYRLILFKYQDY------------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--PNA----LSMLGDLEL 604 (942)
Q Consensus 543 ~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~----~~~l~~~~~ 604 (942)
.-.++++++-..+... .+.|..-..+|..+++...-..+|++++.+...- |.+ .-.=|..++
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 8888888776543221 4556666677888888888888999998876433 332 223456688
Q ss_pred cccchHHHHHHHHHhhccCCC
Q 002286 605 KNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~ 625 (942)
+.|+|++|-..|-.+.+.++.
T Consensus 243 reg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchHHHHHhHHHHHHhcccc
Confidence 889999999988888887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=5.2 Score=43.81 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRL 550 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (942)
.+.+++..|+.+....++++|.+.|.+
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 445666666666666666666665544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.2 Score=38.33 Aligned_cols=123 Identities=14% Similarity=0.099 Sum_probs=56.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhHHHHHHHc
Q 002286 136 QLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKL 210 (942)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~ 210 (942)
.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+-..|+..|..+-...|.. ....++.-+.++...
T Consensus 66 L~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 66 LKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 33444455555555555554433222 2344555555555566666666665555443322 122344445555555
Q ss_pred CCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 211 GQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 211 g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
|-|+.-..-.+-.- .-+|-...+.-.||....+.|+ +.+|...|..+.
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia 194 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIA 194 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHH
Confidence 55554443333211 1122233344444444444554 555555554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.67 Score=40.60 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
++......+..++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+.+++.+....+.. +...-.++.|+..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 34444455557888888888888888888888888888888888888888888888888776666 55566788888888
Q ss_pred CCHH
Q 002286 211 GQLG 214 (942)
Q Consensus 211 g~~~ 214 (942)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.22 Score=40.16 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCChH
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYS 179 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~ 179 (942)
.+..+.+.+..+|++..+.+.+|..++..|++++|++.+-.+++.+|+. ..+.-.+-.++-..|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4566788889999999999999999999999999999999999998765 444444444444444433
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.54 Score=45.36 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=60.0
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.+++|+..|.-++-...-.+.... ..++..+|++|...|+.+....++++|+....
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~---------------------- 149 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE---------------------- 149 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH----------------------
Confidence 445555555554444332222211 45677778888888886666666666554211
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
............-+...+.+.+|.+..+.|++++|..+|.+++....
T Consensus 150 --------~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 150 --------EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred --------HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 00000000001223567888899999999999999999999887443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=7.1 Score=42.19 Aligned_cols=252 Identities=17% Similarity=0.107 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002286 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (942)
Q Consensus 251 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (942)
....+.+.......|+++.-....+..+...|+.+.|+..++..+. ..-.......++.+|.++....+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555566666677888888888888888888886667777776654 111122344567777778888888888888887
Q ss_pred HHHhcCCCCCchhh-hhcHH-HHHHH--------cCChHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002286 331 SVKEINKPHEFIFP-YYGLG-QVQLK--------LGDFRSALTNFEKV---LEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (942)
Q Consensus 331 a~~~~~~~~~~~~~-~~~la-~~~~~--------~g~~~~A~~~~~~~---l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (942)
..+. .+...+ |..++ .++.. .|+-+.|-.+++.. +...|.+..+-. .-..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHH
Confidence 7752 222222 22222 33321 22333333333322 222222211100 00111111
Q ss_pred HHHHHHHhCcCcHH--HHHHHHHHH---hcCCHhHHHHHHHHHHHH--HHHcCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 002286 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTL--LKKAGEEVPI--EVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 398 ~~~~~l~~~p~~~~--~~~~la~~~---~~~~~~~A~~~~~~a~~~--~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~ 468 (942)
.-.+.- .++..+. .+..++.++ .....++.. ++... .+... +.+. -.+..+|.++...|+...|.
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~ 469 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAP 469 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 111110 1111111 234455444 222222222 22211 12222 2222 34556799999999999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCC-HHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVL 547 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 547 (942)
.+|...++.... ........|.++|.+|.++...|. ..++..+
T Consensus 470 ~~f~i~~~~e~~------------------------------------~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~ 513 (546)
T KOG3783|consen 470 KCFKIQVEKESK------------------------------------RTEDLWAVPFALYELALLYWDLGGGLKEARAL 513 (546)
T ss_pred HHHHHHHHHHHh------------------------------------hccccccccHHHHHHHHHHHhcccChHHHHHH
Confidence 999998863110 001334567899999999999988 9999999
Q ss_pred HHHHHHhCCCc
Q 002286 548 YRLILFKYQDY 558 (942)
Q Consensus 548 ~~~~l~~~p~~ 558 (942)
+.++-....++
T Consensus 514 L~kAr~~~~dY 524 (546)
T KOG3783|consen 514 LLKAREYASDY 524 (546)
T ss_pred HHHHHhhcccc
Confidence 99988766555
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.23 Score=49.57 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 167 (942)
.|+.+.+.++..+|+++.-+--+|.+|.+.|.+..|...++..+...|+++.+-..
T Consensus 199 ~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 199 LALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 45555555555555555444445555555555555555555555555544444333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.24 Score=49.42 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=67.3
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
..++-.++...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999999988766555543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.14 Score=49.77 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=32.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
....|+.++|..+|+.++...|+++.++...|...-..++.-+|-.+|-+++..+|.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 3445555555555555555555555555555555555555555555555555555554
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.96 Score=37.54 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC----CCC--
Q 002286 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD-- 749 (942)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~-- 749 (942)
.-....|-|++|...+.++.+.....+.. .+.-++-.|+..+..+|+|++++..-+.+|..|.. ..|
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 33445677788888888777765321110 13445667788899999999999999998876632 233
Q ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 750 ---AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 750 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
..+.+..+.++...|+.++|++.|+.+-++
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445577788889999999999999887664
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.11 Score=50.64 Aligned_cols=63 Identities=32% Similarity=0.344 Sum_probs=34.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
...|+.++|...|+.++.+.|++++++..+|.+....++ .-+|-.+|-+++.++|.+..++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCCchHHHhh
Confidence 345555555555555555555555555555555554444 555555555555555555544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.55 Score=41.10 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 178 (942)
.++..++.-+--..|+.+..-+.-|.++...|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+.
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 37888888887888999999999999999999999999999999988888888889999999888874
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.31 Score=45.49 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.++..+|..|...|+.+.|.+.|.++...........+.++.+.++....|++.....+..++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666666666666666665554444444455666666666666666666666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.2 Score=34.59 Aligned_cols=89 Identities=25% Similarity=0.178 Sum_probs=56.3
Q ss_pred cCCHHHHHHHHHHHHHhC---c---------CcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC------HH
Q 002286 389 LGQIEKAQELLRKAAKID---P---------RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP------IE 449 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~---p---------~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~ 449 (942)
-|-+++|...+.+++... | -+...+..|+..+ ..|+|++++.....++..+...+.-.. ..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 356666666666665542 1 1244566666677 777777777777777777766544322 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+.++.+..+...|..++|+..|+.+-..
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4566688888999999999999988763
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.11 Score=32.06 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.+++++|.++...|+++.|+..|+.+++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35566666666666666666666666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=8.3 Score=38.54 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=105.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
+.+...-++..+...-+..-..+++++|.+..++..|+.-.... ..+|...++++++...... ........
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~y----r~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIY----RQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHH----hhHHHHhh
Confidence 44556667777777778888889999999999988888655444 7778888888776532111 11111111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.|...+|.. + .+......+-..++.+..++|+..+|++.++...+.++. ......+-++...+....-|..
T Consensus 259 ~~~~~da~~------r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL------R--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh------h--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0 011112233456788888889999999999888764321 1112223344455555444444
Q ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHH-------------HcCC---HHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 361 ALTNFEKVLEIY-PDNCETLKALGHIYV-------------QLGQ---IEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 361 A~~~~~~~l~~~-p~~~~~~~~la~~~~-------------~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
....+-+.-++. |......+.-+.+-. +.|- --.|++.+.++++.+|.-+..+..+-
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 333333322221 333322222221111 1121 12466777777777777766555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.12 Score=31.83 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 159 (942)
+++.+|.++...|+++.|+..|..+++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=17 Score=41.97 Aligned_cols=213 Identities=10% Similarity=-0.029 Sum_probs=113.4
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 421 (942)
.++..-....+.+.|...+.+.....+-+. .+...+|.-....+...+|...+..+..... +.........+- .
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHH
Confidence 344445567778888888887655443322 2334444444443335677777776553322 222233333333 7
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.++++.....+..+-.... ......+-+|..+...|+.++|..+|+++......-+.+. ... +.
T Consensus 325 ~~dw~~~~~~i~~L~~~~~-----~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LA---------a~~--Lg 388 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAK-----EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVA---------AQR--LG 388 (644)
T ss_pred ccCHHHHHHHHHhcCHhhc-----cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHH---------HHH--cC
Confidence 7888877666666422221 2467888889998889999999999999855211000000 000 00
Q ss_pred hhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 581 (942)
....+ ....................+..+...|....|...+..++.. .+......++.+....|.++.++..
T Consensus 389 -~~~~~----~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 389 -EEYPL----KIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred -CCCCC----CCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000 0000000000001112344566666777777777777766654 2245566666777777777777665
Q ss_pred HH
Q 002286 582 VN 583 (942)
Q Consensus 582 ~~ 583 (942)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 54
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.8 Score=42.78 Aligned_cols=105 Identities=10% Similarity=0.174 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH----H
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA----Q 751 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~ 751 (942)
.++..+|..|.+.|+++.|+..|.++++..... ....++++++..+.+..|++.....+..++-.......+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 467899999999999999999999999876321 1356788899999999999999999999987765454442 3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
....-|..+...|+|.+|-+.|-.+..-+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 4455677788899999999998777655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=13 Score=40.44 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc----------------
Q 002286 538 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 589 (942)
Q Consensus 538 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---------------- 589 (942)
...|++|...|.-+... +|-..+.++.++.+...+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44566777777766653 35558899999999999999999888887775321
Q ss_pred -----CCChh---HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHH
Q 002286 590 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (942)
Q Consensus 590 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (942)
|.+-. +++.....+.+.|=|..|.++.+-++++.|..|+++...+.++ |...+ .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2333444556789999999999999999999899988888888 54442 6677777
Q ss_pred HHHHHH-----HhcCCCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhc
Q 002286 662 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 706 (942)
Q Consensus 662 ~~~~~~-----l~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 706 (942)
++++.. +..-|+-.+. ..+|..|.+... -..|...+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 776655 3344554432 345566665544 5678888888888775
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=20 Score=41.43 Aligned_cols=382 Identities=9% Similarity=-0.030 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+.-|...++.|++..+..+.....+ .|.. ..+-+..+..+... .....+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d-~pL~-------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKD-YPLY-------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccC-CCcH-------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 4678899999999999999988887632 2211 11122221111111 011234445
Q ss_pred hhcCCCCcchHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 121 SRIDMHEPSTWVGKGQLLL---AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
+..+|+.|..-..+..... ..+++..-+.++ ...|.+.......+......|+-++|.....++-...... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 5667777766665554433 344555444422 2347777776777777888898888877777665544332 1
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHH-----------Hhh-ccHHhHHHHHHHHHHHHHhC
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRA-LQLDPENVEALVALAVMD-----------LQA-NEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~-----------~~~-~~~~~~~~A~~~~~~~~~~~ 264 (942)
...-.+-..+...|...... +++++ +.+..++......+.... ... .+ ...... .+...
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~----~~~~~ 235 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVET----FARTT 235 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHH----Hhhcc
Confidence 11222222222223222221 11111 111111111111111111 000 00 111111 11111
Q ss_pred -CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc
Q 002286 265 -PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (942)
Q Consensus 265 -p~~~-~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 341 (942)
|... .....++..-....+.+.|...+.......... .....++..+|......+...+|..++..+... ...
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~----~~~ 311 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR----SQS 311 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc----cCC
Confidence 1111 111222333334556666777776553322211 112233344444444433245566666554421 111
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----------
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA----------- 410 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------- 410 (942)
....-....+.+..++++.+...+..+-..........+.+|..+...|+.++|...|.++... .+.
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa~~Lg~ 389 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAAQRLGE 389 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHHHHcCC
Confidence 1122222334446677776666666654333345567777777777777777777777776431 110
Q ss_pred ------------------HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 411 ------------------QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 471 (942)
Q Consensus 411 ------------------~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (942)
......+..+ ..|....|...+..+... .++.-...++.+....|.++.++...
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-------~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 390 EYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-------RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred CCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0112222333 556666665555544432 12344555666666777777766655
Q ss_pred HH
Q 002286 472 KD 473 (942)
Q Consensus 472 ~~ 473 (942)
..
T Consensus 463 ~~ 464 (644)
T PRK11619 463 IA 464 (644)
T ss_pred hh
Confidence 43
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.02 E-value=16 Score=39.69 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHhccCChH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----cchhhhhhhHHHHHHHHHHHHHHHHHc
Q 002286 23 PRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYTYL 96 (942)
Q Consensus 23 p~~~~~~~~~l~~~~~~~~--~~~~~a~~y~~~g~~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~y~~~ 96 (942)
.+|...+.-+-....-++. +-+-+...||..|.|++|+..--.+-.. +...++..-.+..+.++.-...-....
T Consensus 40 sddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~ 119 (926)
T COG5116 40 SDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIG 119 (926)
T ss_pred hchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhC
Confidence 3333333333333344444 6678889999999999999986655442 111222222334445544333333333
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 002286 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFN 174 (942)
Q Consensus 97 g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~ 174 (942)
|....-.. .-.-.++.+....-.+...-+.+|.... |-. +...+.+++...+. ...++.++.....
T Consensus 120 ~~~d~iD~-------~l~~v~e~i~~kc~~~se~~~~lgIa~e--g~r---ldiie~~l~~~~d~di~~ylL~Lait~v~ 187 (926)
T COG5116 120 GDKDIIDR-------ILDFVLEVIGAKCVDDSEIGYLLGIAAE--GLR---LDIIEKYLSDGNDCDIINYLLDLAITLVE 187 (926)
T ss_pred CCcccchH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHH---HHHHHHHHhCCCcccHHHHHHHHHHHHhh
Confidence 33111100 1112222222222222233333333322 111 23344444433221 2345555555544
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
...+.. +++....+..|..+..-++..+.|+..+++.+.|...+++..+.+.
T Consensus 188 ~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 188 EEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 433333 3566667777776444477889999999999999999999877543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=8.7 Score=42.18 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA-------------DRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
-|-.+|...+..=+++-|.+.|.++-.. .....+--..+|.++.-.|+|.+|.++|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4666666666666777777777665211 011112234456666666777777766654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.68 Score=37.93 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=46.4
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 686 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
.+.|++..|++.+.+..+....+.... ...+..++|.++...|++++|+..++++++......|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 357888888888888777664332211 2456778888888888888888888888887766666
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.16 Score=47.50 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=32.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 172 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
....++.+.|.+.|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555 4445555555555555555555555555555543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.7 Score=35.29 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 002286 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
..-|--++...+..+|+..++.++++.+++++ -.++-++..+|...|++.+.+++...=+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454466788899999999999999777666 67888899999999999998877644443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.72 E-value=15 Score=38.71 Aligned_cols=190 Identities=14% Similarity=0.019 Sum_probs=114.9
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCC
Q 002286 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672 (942)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 672 (942)
.+....-|..-+-.|+..++.+.+..+....-+.....++.|.....+.. .+..+|+.+|+.+--.-|
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLlaP 179 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLAP 179 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhCC
Confidence 33444445555567777777777776554443333333433333322222 678888888888888888
Q ss_pred CCHH--HHH-HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 673 SNLY--AAN-GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 673 ~~~~--a~~-~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
.... +.. .-..+....|+.+++..+-.+....+..|++..+..-. +...+...++-. -...+..++..++....
T Consensus 180 GTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~--F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q 256 (421)
T PRK12798 180 GTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQR--FVDLVVRLDDEI-RDARLVEILSFMDPERQ 256 (421)
T ss_pred chHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHH--HHHHHHhccccc-cHHHHHHHHHhcCchhH
Confidence 7543 333 33444467889999888888888888766554333333 333333333221 22336666776544444
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHH
Q 002286 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 798 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 798 (942)
..+|..+++.-.-.|+.+-|.-.-.+++.+.+. ...-.-.+..|+-.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa 304 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAA 304 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHH
Confidence 778888888888899999999888998888743 233333444454444
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=12 Score=37.42 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC---HHH
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---AQI 752 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~ 752 (942)
+.-..++.+-.+.|+..+|.+.|+...+..|-. ..-.++.|+...++...-|.+- +.++.+|.+-.. +.+
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~---t~lniheNLiEalLE~QAYADv----qavLakYDdislPkSA~i 348 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL---TMLNIHENLLEALLELQAYADV----QAVLAKYDDISLPKSAAI 348 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhccccCcchHHH
Confidence 334456666667777777777777766655411 2334555665555554444332 233333322111 111
Q ss_pred HHHHHH-------------HHHHccc---HHHHHHHHHHHHHhCCCChhhH
Q 002286 753 LLYLAR-------------THYEAEQ---WQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 753 ~~~l~~-------------~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 787 (942)
-|.-+. +-.+.|- -..|++...++++.+|.-|...
T Consensus 349 cYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 349 CYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 111111 1122232 1258888999999999876543
|
|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.1 Score=47.58 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 845 INTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA 886 (942)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 886 (942)
+....+.|..+..+.+..-++..+.|++.++.+|+.|+++.+
T Consensus 202 i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~ 243 (591)
T KOG2412|consen 202 IQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDE 243 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333444554444443333333444455555555555555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.54 E-value=24 Score=40.54 Aligned_cols=248 Identities=13% Similarity=0.085 Sum_probs=137.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 353 (942)
....++.+..|.-|+.+.+.--. +.....+.....|..++..|++++|...|-+.+... .|..+. .-+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~Vi------~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEVI------KKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHHH------HHhc
Confidence 34556677777777777665321 123345678888999999999999999999988532 122221 2233
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHhcCCHhHHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA---QAFIDLGELLISSDTGAALD 430 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~A~~ 430 (942)
......+-..+++.+.+..-.+.+--..|-.+|.++++.++-.+..++ .+.-. +.-..+-.++..+-.+.|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHH
Confidence 444455556677777766555556666778899999998875554443 33110 01111111113333333332
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhh
Q 002286 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (942)
...+. +. +. ..+-.++...|+|++|+.++...--
T Consensus 485 LA~k~-------~~--he---~vl~ille~~~ny~eAl~yi~slp~---------------------------------- 518 (933)
T KOG2114|consen 485 LATKF-------KK--HE---WVLDILLEDLHNYEEALRYISSLPI---------------------------------- 518 (933)
T ss_pred HHHHh-------cc--CH---HHHHHHHHHhcCHHHHHHHHhcCCH----------------------------------
Confidence 22221 11 11 2234567788999999999876421
Q ss_pred hccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHh-CCCc-HHH----HHHHHHHHHHcCChhHHHHHHHH
Q 002286 511 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-YQDY-VDA----YLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~-~~~----~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
+.........|+.+.. ..+++-..++-+.... ++.. ... ....-.+..-.+++..-..+++.
T Consensus 519 -----------~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~ 586 (933)
T KOG2114|consen 519 -----------SELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLES 586 (933)
T ss_pred -----------HHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHH
Confidence 2233455556666665 3455555554444432 2111 000 01122334445677777777777
Q ss_pred HHhhcCCChh
Q 002286 585 ALKVNGKYPN 594 (942)
Q Consensus 585 ~l~~~p~~~~ 594 (942)
..+..|+.++
T Consensus 587 ~~E~s~~s~e 596 (933)
T KOG2114|consen 587 MSEISPDSEE 596 (933)
T ss_pred HHhcCCCchh
Confidence 7777777665
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.42 Score=46.88 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 152 ~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.++....|+++..|...+.-....|-|.+--.+|.+++..+|.+ .++|.. -+.-+...++++.++..|.+++..+|++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 33444567788888888877778888888888899999999988 666655 5666777889999999999999999998
Q ss_pred HHHHHHHHHH
Q 002286 231 VEALVALAVM 240 (942)
Q Consensus 231 ~~~~~~l~~~ 240 (942)
+..|...-.+
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 8887665543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.32 Score=45.56 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=42.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.....|+.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556677777777777777777777777777777777777777777777777777766
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.5 Score=45.90 Aligned_cols=128 Identities=23% Similarity=0.170 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhcCCCCcchHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-H
Q 002286 112 LATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-A 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-~ 188 (942)
-++..+...+.++|.++..++.. ...+...+....+.-.+...+..+|.++.+...++......|....++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35556666666788888775544 67777778888999999999999999999999999988888777777666655 7
Q ss_pred HHhCCCCchhh------HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 189 LQVHPSCPGAI------RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 189 l~~~p~~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
....|.+ ... ++.++.....+|+..++....+++....|.++.....+...
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7777777 222 23358888888999999999999999999987766555544
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.99 Score=53.86 Aligned_cols=11 Identities=9% Similarity=-0.206 Sum_probs=5.3
Q ss_pred HHhhhhhhhhc
Q 002286 922 RVKARIFYICS 932 (942)
Q Consensus 922 ~~~~~~~~~~~ 932 (942)
+.+..|.-+..
T Consensus 525 r~~~~~~~~~~ 535 (1021)
T PTZ00266 525 RNSYFLKGMEN 535 (1021)
T ss_pred hhhhhhhhccc
Confidence 44555555443
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.63 E-value=25 Score=38.90 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 599 (942)
.++.+-|.-..+..+|..++++|...+.-.|.+ +.....++.+|....+.+.|.+++.++-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Q ss_pred hhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002286 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (942)
-.+....|.-++|+...........+....+......- +.+.--+.++....-.+..++.+-.
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~-----------------~~PTt~lsv~~~l~~~n~Q~I~sE~ 497 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAE-----------------CKPTTDLSVQGLLMIFNSQTISSES 497 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhc-----------------CCCchHHHHHHHHHHHhcchhhhcc
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHH---------HHHHhhhCCCCC-
Q 002286 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY---------QNCLRKFYYNTD- 749 (942)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---------~~al~~~~~~~~- 749 (942)
.+-.+-.....-......-+..++ ..-...-.+-...-+...+.+-.+++ +.++..-...+.
T Consensus 498 ~~~~l~~~~~~q~~v~~~~~e~L~--------F~L~~~~~~~~~~~ka~e~~~~~~Cln~~~~~~FGe~~~~~E~~~nE~ 569 (872)
T KOG4814|consen 498 SSQTLSILYTLQMIVKVSEEEPLE--------FFLNYLPTVQKLLQKAVEFLKTVKCLNQLPPDVFGEAIYQQEVAVNEI 569 (872)
T ss_pred hHHHHHHHhHHHHHHHHHHHhHHH--------HHHhhccchhHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHHhhhhHH
Q ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCCh------hhHhhHHHHHHHHHH-hhhhhcCCCHHHHHHHH
Q 002286 750 ---AQILLYLARTHYEAEQWQDCKKSLLRAIHL---APSNY------TLRFDAGVAMQKFSA-STLQKTRRTADEVRSTV 816 (942)
Q Consensus 750 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~------~~~~~la~~~~~~~~-~~l~~~~~~~~~~~~a~ 816 (942)
..+--+||.-+.+...++-..+.+.-+.+. -|.|. .++-..+++++-+.. +.-++..-+-++..-+.
T Consensus 570 ~WFa~T~WNLav~C~Kd~~~e~~~EF~~L~~~f~~~ip~D~~~~~~~~I~R~~~L~~~~~IaLEk~~K~~~~~~Q~~~~s 649 (872)
T KOG4814|consen 570 EWFASTSWNLAVKCLKDQSCESISEFPQLCIQFIDLIPVDDFTMYHFTIWRFKALILQLIIALEKAKKDQHQKDQDIYES 649 (872)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHccCCcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q ss_pred HHHHHHHHH
Q 002286 817 AELENAVRV 825 (942)
Q Consensus 817 ~~l~~a~~~ 825 (942)
..|...+.+
T Consensus 650 e~L~~s~~~ 658 (872)
T KOG4814|consen 650 EELVNSINV 658 (872)
T ss_pred HHHHhhhhh
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.46 E-value=9.6 Score=39.79 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-- 177 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-- 177 (942)
+++..=.+.+..+|....+|..+-.++. .+.-+++-+.+...+++.+|+...+|..+..++.+.+.
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 5666667777778876666655433222 22245666778888899999999999999999987764
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh------cc--
Q 002286 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---GQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE-- 246 (942)
Q Consensus 178 ~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------~~-- 246 (942)
+..=+.+++++++.+|.+.-...+..-.+-... ....+=+.+..+++..++.|..+|.....+.... |.
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~ 206 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFM 206 (421)
T ss_pred HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccC
Confidence 688899999999999988333323222222222 2355667788888888999999998877766532 21
Q ss_pred -HHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 247 -AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 247 -~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
..-...-+.....++-.+|++..+|..
T Consensus 207 ~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 207 PKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CHHHHHHHHHHHHHHHhcCccccceeee
Confidence 223556666777777788888877765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.4 Score=31.91 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.++.++|.+|..+|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.8 Score=40.40 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=61.7
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHccc
Q 002286 688 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQ 765 (942)
Q Consensus 688 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~l~~~~~~~g~ 765 (942)
.-.-..|...|-++-... ..++++..+.+|..|. ..+.++|+.++.++++..+.. .++.++..|+.++++.|+
T Consensus 119 r~~d~~A~~~fL~~E~~~----~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTP----ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred ccCcHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 334467777776664432 2378999999998887 588999999999999987544 349999999999999999
Q ss_pred HHHHH
Q 002286 766 WQDCK 770 (942)
Q Consensus 766 ~~~A~ 770 (942)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99885
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.99 Score=31.57 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002286 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (942)
Q Consensus 714 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~ 760 (942)
..+|..+-+.+.+.|++++|.++|+++.+. +-.++..++..+..++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGL 48 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 456677777777777777777777777764 3455666666655554
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.06 E-value=2.3 Score=32.60 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=42.7
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
.+.-|.-++...+..+|+..|+++++..++...-+..+|.+.....+.|.+.+.+...-+-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888888888888888877777777765555544444777766554433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.51 Score=31.37 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
.++.+||.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57899999999999999999999999876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.53 Score=29.67 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 002286 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (942)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~a~~~l~~~ 66 (942)
++...|..+...|++.|++++|.++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44558999999999999999999999875
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.6 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 848 HVEYCKHLLDAAKIHREAAEREEQQ 872 (942)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~e~~ 872 (942)
+...++.+|.+.+..-+++++.++|
T Consensus 215 gv~~~qe~La~~qe~eE~qkreeEE 239 (1064)
T KOG1144|consen 215 GVRAMQEALAKRQEEEERQKREEEE 239 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544443333333333
|
|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.9 Score=39.29 Aligned_cols=7 Identities=43% Similarity=0.734 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 002286 903 KRKLEDE 909 (942)
Q Consensus 903 ~~~~~~~ 909 (942)
.|+..+|
T Consensus 161 ~RkakEE 167 (299)
T KOG3054|consen 161 ERKAKEE 167 (299)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.70 E-value=11 Score=41.30 Aligned_cols=129 Identities=17% Similarity=0.052 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHH-H
Q 002286 147 ASSAFKIVLEADRDNVPALLG--QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-A 223 (942)
Q Consensus 147 A~~~~~~~l~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 223 (942)
++..+...+..+|.++..++. +...+...+....+.-.....+..+|+. ......+|......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556666666678888776544 3666777888889999999999999998 55677788888778877777766666 8
Q ss_pred HhhCCCCHHHHHHH------HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 224 LQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 224 l~~~p~~~~~~~~l------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
....|++......+ +......+. ..++...+.++....|.++.+...+.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 88899988876666 666666666 777777788888888888766665555433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.63 Score=49.20 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
....|+..|.+++...|.....+...|.++++. |+.-.|+.-...+++++|.. ...++.++.++..++++.+|+.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHhhhh
Confidence 344455555555555555554444444444433 33334444444444445444 33445555555555555555554
Q ss_pred HHHHHhhCC
Q 002286 220 FQRALQLDP 228 (942)
Q Consensus 220 ~~~al~~~p 228 (942)
...+....|
T Consensus 468 ~~alq~~~P 476 (758)
T KOG1310|consen 468 HWALQMSFP 476 (758)
T ss_pred HHHHhhcCc
Confidence 444444444
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.16 E-value=9.5 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 002286 838 HGFDEKKINTHVEYCKHLLDAAKIHR 863 (942)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (942)
++|.++.+.+..+.|.+-.+.+-.++
T Consensus 313 mGfeesdaRlaLRsc~g~Vd~AvqfI 338 (568)
T KOG2561|consen 313 MGFEESDARLALRSCNGDVDSAVQFI 338 (568)
T ss_pred cCCCchHHHHHHHhccccHHHHHHHH
Confidence 57777888888888877666655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.10 E-value=10 Score=41.43 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=66.9
Q ss_pred HHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 135 GQLLLAKGEVEQASSAFK--IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
=......|+++++..... +++..-| ..-....+..+.++|.++.|+.+.+. +..++.++ .++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~rFeLA---l~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------PDHRFELA---LQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHH---HHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hHHHhHHH---HhcCC
Confidence 344556677777666654 1221122 23344555566666777666654321 33445443 45777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~ 292 (942)
.+.|.+... ..+++..|..||...+..|+ ++-|..+|.++-. +..|..+|...|+.+.-.++.+
T Consensus 334 L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAK-----ELDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHH-----hcCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHH
Confidence 777766533 23466778888888888877 7777777765421 2334445556666655555555
Q ss_pred HHH
Q 002286 293 TAL 295 (942)
Q Consensus 293 ~~~ 295 (942)
.+.
T Consensus 398 ~a~ 400 (443)
T PF04053_consen 398 IAE 400 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.87 E-value=2.5 Score=50.57 Aligned_cols=173 Identities=21% Similarity=0.196 Sum_probs=123.3
Q ss_pred hcHHHHHHHcCChHHHHH------HHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcH
Q 002286 346 YGLGQVQLKLGDFRSALT------NFEKV-LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDA 410 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~ 410 (942)
...|+.....|.+.+|.+ .+... ....|+....+..++.++...|+.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 345666666777777766 55533 3457888999999999999999999999988776533 25667
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccc
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG-E--EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 486 (942)
..+..++... ..+....|+..+.++..+..-.. . +....+..+++.++...++++.|+.+++.|+...... ..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--~g- 1092 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--LG- 1092 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--cC-
Confidence 7778888776 77889999999988887754332 2 2223556788888999999999999999998832100 00
Q ss_pred cccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 002286 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (942)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (942)
...-.....+..+++++...+++..|....+....
T Consensus 1093 --------------------------------~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1093 --------------------------------PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred --------------------------------ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 01123455667778888888888887776665544
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.54 Score=46.18 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=72.4
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
.|.++....|+++..|...+....+.|.|.+--..|..+++.+|.|++.|.. -+.-+...++++.+...|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444445568899999999999999999999999999999999999999977 555677889999999999999999999
Q ss_pred CchhhHh
Q 002286 195 CPGAIRL 201 (942)
Q Consensus 195 ~~~~~~~ 201 (942)
. +.+|+
T Consensus 175 ~-p~iw~ 180 (435)
T COG5191 175 S-PRIWI 180 (435)
T ss_pred C-chHHH
Confidence 9 55554
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.49 E-value=2.8 Score=34.27 Aligned_cols=60 Identities=27% Similarity=0.289 Sum_probs=46.7
Q ss_pred HHhcCCHhHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 002286 419 LLISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (942)
Q Consensus 419 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 478 (942)
.+..||+..|++.+.+............ -...+.+++.++...|++++|+..+++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3377888888888888887766554333 13567788999999999999999999999853
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.57 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 002286 716 VWINLAHVYFAQGNFALAMKMY 737 (942)
Q Consensus 716 ~~~~la~~~~~~g~~~~A~~~~ 737 (942)
+.+++|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.20 E-value=5.8 Score=47.71 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--- 335 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 335 (942)
.|.....+..++.++...|++++|+....++.- ...+.|.....+..++...+..++...|...+.++....
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 455555566666666666666666655555442 122334444555555555555555555555555544311
Q ss_pred --CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH
Q 002286 336 --NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (942)
Q Consensus 336 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (942)
+..|........++.++...++++.|+.+++.+++
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 12333333344444444444555555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.03 E-value=8.1 Score=38.69 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
++..++..+...|+++.+...+++.+..+|.+-..|..+...|...|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666666666777777777777777777766777776777777777777777766655
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.83 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~ 65 (942)
.+.+.+|..++.+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.71 E-value=2.1 Score=47.67 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 002286 857 DAAKIHREAAE 867 (942)
Q Consensus 857 ~~~~~~~~~~~ 867 (942)
+..+..|++.+
T Consensus 217 ~~~qe~La~~q 227 (1064)
T KOG1144|consen 217 RAMQEALAKRQ 227 (1064)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=88.66 E-value=28 Score=34.80 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccH
Q 002286 692 DVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQW 766 (942)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~ 766 (942)
...++++.++.+........ ....+...+|..|+..|++++|+.+|+.+...|....- ..++..+..|....|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 34566666666655322111 23456678899999999999999999999887754332 66778888999999999
Q ss_pred HHHHHHHHHHH
Q 002286 767 QDCKKSLLRAI 777 (942)
Q Consensus 767 ~~A~~~~~~al 777 (942)
+..+.+.-+++
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 99887765544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.58 E-value=48 Score=37.42 Aligned_cols=21 Identities=0% Similarity=0.052 Sum_probs=14.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHH
Q 002286 663 LYTRVIVQHTSNLYAANGAGV 683 (942)
Q Consensus 663 ~~~~~l~~~p~~~~a~~~la~ 683 (942)
-|+++++.||.+...+.....
T Consensus 764 EFDqiMksDPe~m~~lv~kVn 784 (1259)
T KOG0163|consen 764 EFDQIMKSDPETMLELVAKVN 784 (1259)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 478888889987766554433
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.6 Score=27.87 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 002286 166 LGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~ 184 (942)
+++|..+..+|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3333333333444444333
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.3 Score=28.28 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFK--IVLEADRDN 161 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~ 161 (942)
+.++.+|..+..+|++++|+..|. -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 468889999999999999999944 777777654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.40 E-value=35 Score=35.64 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhcC-CCC--------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHH-HHHHHHH
Q 002286 655 THLEKAKELYTRVIVQH-TSN--------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW-INLAHVY 724 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~-p~~--------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~la~~~ 724 (942)
+.+.+|..+-+..+... -.| ...++.+..++...|+...-...+...+....-........++ ..+-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 77888887776655432 112 2234555666677788766666666655543110000223333 4456889
Q ss_pred HHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 725 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 725 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
+..+.|+.|-....+..--...+++ +..++++|++..-.++|..|.+++-.++...|++..+=|...
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~ 288 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQ 288 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHH
Confidence 9999999998886554311111222 677899999999999999999999999999999766655433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.1 Score=29.07 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
+++..||.+-+..++|++|+.-|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.34 E-value=4 Score=38.21 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002286 409 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 409 ~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (942)
++...+.+|..|...|.++++..+.+++++.+. +..++++++..++.++...|+++.|-
T Consensus 140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555555666666666666655433 22456677777777777777776653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=88.10 E-value=1 Score=28.37 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 002286 748 TDAQILLYLARTHYEAEQWQDCKKSLLR 775 (942)
Q Consensus 748 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 775 (942)
+|..++..+...|.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455555555555555555555555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.78 E-value=34 Score=37.46 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=14.3
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKV 368 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (942)
...|..||......|+++-|..+|.++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 334555555555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.9 Score=45.90 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
......|+..|.+++...|.....+..++.++++.+ +.-.|+..+..+++.+|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 445568999999999999999999999999998874 66678888888999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 002286 184 FYKRALQVHPSC 195 (942)
Q Consensus 184 ~~~~~l~~~p~~ 195 (942)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.1 Score=31.28 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=30.3
Q ss_pred hhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhH
Q 002286 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 637 (942)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 637 (942)
...|..+...+.+.|++++|.+.|+++.+.+-.++.+++..+-+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445666777777777777777777777776666666666555443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=87.42 E-value=34 Score=34.41 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 428 ALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (942)
Q Consensus 428 A~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (942)
-....+++++..... ....+++++..+|..+++.|++.+|..+|-.
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 445556666666211 2234578888888888888888888877753
|
; PDB: 3LKU_E 2WPV_G. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.38 E-value=10 Score=38.06 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHH
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 438 (942)
..++..++..+...|+++.++..+++.+..+|.+...|..+...| ..|+...|+..|++..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456677777777788888888888888888888888888888877 888888888888877764
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.35 E-value=3.3 Score=40.75 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~ 170 (942)
+.++.|....++.+..+|.++..+--+|.+|.+.|.+.-|+..+...+...|+.+.+-...+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 344477777777777778777777777888888888888888887777777777766555444
|
|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.22 E-value=4.5 Score=42.46 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 845 INTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEA 889 (942)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 889 (942)
+..|+.+.....++++....+-...|.|...|.|++|++.+++.+
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer~ 434 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEERA 434 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 444555555555555444333334444555556666655555433
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=87.16 E-value=13 Score=38.83 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCC--------CC---------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQVHP--------SC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
+.-|..++++|+|..|..-|..++++.. .. ...+--.+..||..+++.+.|+..--+.+-++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3345566777777777777776666521 11 012334578899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccHHhHHHHHHHH
Q 002286 229 ENVEALVALAVMDLQANEAAGIRKGMEKM 257 (942)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 257 (942)
.+...+..-+.+.....+ |.+|-..+
T Consensus 260 ~~frnHLrqAavfR~LeR---y~eAarSa 285 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLER---YSEAARSA 285 (569)
T ss_pred chhhHHHHHHHHHHHHHH---HHHHHHHH
Confidence 888888888888777766 66665443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.96 E-value=3.6 Score=42.53 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=75.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH
Q 002286 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 534 (942)
|..++++++|..|..-|..+++.+.....++.......- +.......+-..+..|
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~-------------------------di~~vaSfIetklv~C 237 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAE-------------------------DISSVASFIETKLVTC 237 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChh-------------------------hHHHHHHHHHHHHHHh
Confidence 566788888888888888888865433322221110000 0001122345567889
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
|..+++++.|+....+.+..+|.+..-+++.+.++..+.+|.+|...+--+
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887665443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.77 E-value=25 Score=36.83 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=99.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----C
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNR----G 176 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----g 176 (942)
...+...+++-+.+...+++.+|++..+|..+..++.+.+ ++..=+.+++++++.+|.|..+|...=.+.-.. .
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 3455667788899999999999999999999999999887 468889999999999999988886554444332 2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH------cCC------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 177 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
...+=+.+..+++..++.+ -.+|.....++.. .|+ ...-+.....++-.+|++..+|+..-.
T Consensus 164 ~~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred cchhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 3567788899999988888 4445555544442 231 123344455566679999999877333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.48 E-value=52 Score=35.57 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 158 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
.|-+-.++..+-.++...-.+.-...++.+++....+- ..++.++.||... ..++-...|++.++.+-++...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 44455566666666666666666667777887766543 4577788888877 55666778888888887777777777
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
+..|.. ++ ..++...|.+++..
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHHH
Confidence 777766 44 67777777777644
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.5 Score=29.46 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSP 69 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~ 69 (942)
-+.+|.+|...|+.+.|..+|++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367999999999999999999999854
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.46 E-value=54 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=15.4
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHh
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (942)
...|+.++..-.-.|+.+-|.-.-++++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 334555555555555555555555555444
|
|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.00 E-value=17 Score=34.90 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=4.2
Q ss_pred CCHHHHHHH
Q 002286 807 RTADEVRST 815 (942)
Q Consensus 807 ~~~~~~~~a 815 (942)
|.+.+++-|
T Consensus 268 rhlsevqia 276 (445)
T KOG2891|consen 268 RHLSEVQIA 276 (445)
T ss_pred hhhhHHHHH
Confidence 444555443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.72 E-value=55 Score=34.28 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCCchhhh
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVT---NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPY 345 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~ 345 (942)
.|+.+..++...|+...-..++...+... .+....+...+.+-+.|...+.|+.|-....+..- ....+.....-.
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL 250 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence 34444455555555444444444443221 12233344555666667777777777666655541 000111223335
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
+.+|.+..-.++|..|.++|-.++...|.+
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 566777777777777777777777777753
|
|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=84.05 E-value=14 Score=40.79 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhhhh
Q 002286 916 QEEHFQRVKARIFYI 930 (942)
Q Consensus 916 ~~~~~~~~~~~~~~~ 930 (942)
+|++-++-.+...++
T Consensus 364 ~E~rkkr~~aei~Kf 378 (811)
T KOG4364|consen 364 QELRKKRHEAEIGKF 378 (811)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555555555444
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=83.91 E-value=35 Score=31.31 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHHH
Q 002286 691 FDVSKDLFTQVQEA 704 (942)
Q Consensus 691 ~~~A~~~~~~~~~~ 704 (942)
..+|++++.++-+.
T Consensus 128 ~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 128 SEKAERYMTRACDL 141 (248)
T ss_pred cHHHHHHHHHhccC
Confidence 44555555555543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.77 E-value=8.9 Score=37.87 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
.+...++++.|+...++.+.++|.+ +.-..-.|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~d-p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPED-PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCC-hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4455566677777777777777766 333455667777777777777777766666666655543
|
|
| >PRK06568 F0F1 ATP synthase subunit B; Validated | Back alignment and domain information |
|---|
Probab=83.30 E-value=35 Score=30.84 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=28.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 839 GFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (942)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 884 (942)
+|-...+..|...+.+-++.+....++++....+...++..+|+.+
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA 72 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLR 72 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333567777777777777777766666665555555555555544
|
|
| >PRK09174 F0F1 ATP synthase subunit B'; Validated | Back alignment and domain information |
|---|
Probab=83.11 E-value=28 Score=33.35 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 884 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 884 (942)
..+..|...+.+-++.+.....++++...+.+.++.++|+..
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666766666666666666555555555555555443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=82.83 E-value=49 Score=33.05 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=61.2
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
.....+..+.++...+...+.... ..+...+|..|+..|++++|+.+|+.+.......+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------------------- 212 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------------------- 212 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 345567777777777776544222 35667889999999999999999999965321000
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHH
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (942)
-......++..+..++...|+.+..+...-++
T Consensus 213 -----------------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 213 -----------------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11224556777788888888888777655444
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
Probab=82.68 E-value=25 Score=28.74 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002286 853 KHLLDAAKIHREAAERE 869 (942)
Q Consensus 853 ~~~~~~~~~~~~~~~~~ 869 (942)
-++|+....-+..++-+
T Consensus 58 h~ILDd~~~~l~~sk~~ 74 (105)
T PF11214_consen 58 HSILDDTESKLNDSKWY 74 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
|
Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ]. |
| >PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family | Back alignment and domain information |
|---|
Probab=82.51 E-value=2.4 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=32.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhhh--hceeeeec
Q 002286 901 LEKRKLEDEQKRLRQQEEHFQRVKARIFYI--CSIKIFKF 938 (942)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 938 (942)
+-+.+..++.++.++.-++.++-.-.|-++ +|++|||.
T Consensus 8 ETRsr~KddiKrv~~~iekVr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 8 ETRSRAKDDIKRVMASIEKVRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHhhceEEeccceEEEEEE
Confidence 344556789999999999999999999988 68999985
|
The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome []. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=82.30 E-value=59 Score=32.76 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHhcCChHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLE 183 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~~a~~~~~~g~~~~A~~ 183 (942)
+..-.+.|+.+- +.-...-.+|..+...|..+...|++.+|...|-.. +++.... .+-..
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~------------ 130 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEE------------ 130 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHH------------
Confidence 344445556555 322222246778888888888888887777666322 1111111 11111
Q ss_pred HHHHHHHhCCCCchhhHhh-HHHHHHHcCCHHHHHHHHHHHHhh----CCC----------CHHHHH--HHHHHHHhhcc
Q 002286 184 FYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALV--ALAVMDLQANE 246 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~~~~--~l~~~~~~~~~ 246 (942)
-.....|.. .+.+.. ....|..+++...|...+...++. +|+ +...+. .+-..-+..++
T Consensus 131 ---~~~~~~~~e-~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 131 ---WSTKGYPSE-ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp ---HHHHTSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred ---HHHhcCCcc-hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Confidence 111223443 333333 334566678888888877766655 332 222111 11122233333
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
...+..-.+.|...++.+|.....+..+|..|+..
T Consensus 207 ~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 207 LPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence 33344445555555555565666666666666553
|
; PDB: 3LKU_E 2WPV_G. |
| >COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.30 E-value=39 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQ 882 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 882 (942)
.....|...+.+-+..++...+.++....+..++++++|.
T Consensus 33 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~ 72 (161)
T COG0711 33 KALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEARE 72 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655555555555555555553
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=82.14 E-value=22 Score=35.17 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
+..+|.+..+.|+|++.+.++++++..+|.....-+..+..+|-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayK 47 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYK 47 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 45566777777777777777777777766654444555555553
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.94 E-value=21 Score=34.31 Aligned_cols=7 Identities=0% Similarity=0.311 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 002286 919 HFQRVKA 925 (942)
Q Consensus 919 ~~~~~~~ 925 (942)
+.+++.|
T Consensus 408 kikelee 414 (445)
T KOG2891|consen 408 KIKELEE 414 (445)
T ss_pred HHHHHHH
Confidence 3334433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.90 E-value=1.8 Score=29.16 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 718 INLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 718 ~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
+++|.+|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455555555555555555555553
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK13454 F0F1 ATP synthase subunit B'; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=39 Score=31.71 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002286 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQA 883 (942)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 883 (942)
..+..|...+.+.+..+....+++++...+...++..+|+.
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~E 98 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAE 98 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665555555444444444444443
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=81.45 E-value=3 Score=44.23 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH-------HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~-------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (942)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.+|..+++|.+|++.|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888899999999887643 2223444466788899999999999999999998764
|
|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
Probab=80.27 E-value=29 Score=42.36 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=5.2
Q ss_pred HHHHHHhhcCCCC
Q 002286 115 QYYNKASRIDMHE 127 (942)
Q Consensus 115 ~~~~~a~~~~p~~ 127 (942)
..|+-.+..-|.+
T Consensus 137 AMyqGlf~~CP~~ 149 (2084)
T PTZ00121 137 AMYQGLFKRCPLD 149 (2084)
T ss_pred HHHhchhhcCCCc
Confidence 3334444444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 942 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-13 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 7e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-12 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 1e-10 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-09 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-06 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 6e-07 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-06 | ||
| 3zgq_A | 482 | Crystal Structure Of Human Interferon-induced Prote | 3e-05 | ||
| 4hoq_A | 482 | Crystal Structure Of Full-length Human Ifit5 Length | 2e-04 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 2e-04 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 3e-04 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 3e-04 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 4e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 4e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 1e-42
Identities = 65/367 (17%), Positives = 141/367 (38%), Gaps = 22/367 (5%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A ++ + R + + + +++++ + ++ + A V
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
RG+ +++E Y+ AL++ P + + G + A QA+ ALQ +P+
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDG-YINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 233 ALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
L L E A +A E P A+A + L F G+ +L
Sbjct: 137 VRSDLGNLLKALGRLEEA-----KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E A+ + P +Y NL +++A Y+ ++ ++ P+ + L
Sbjct: 192 FEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS-PN-HAVVHGNLAC 245
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V + G A+ + + +E+ P + L + + G + +A++ A ++ P A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 468
+ +L + + A L +KA E P +N+ + ++G+ + A
Sbjct: 306 DSLNNLANIK------REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 469 QSFKDAL 475
+K+A+
Sbjct: 360 MHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-41
Identities = 73/349 (20%), Positives = 138/349 (39%), Gaps = 22/349 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G+ E A + + DN LL + + F R S F A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
+P A +G + GQL +A + ++ AL+L P+ ++ + LA + E A
Sbjct: 62 QNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
++ A + P + L N G+ + A+ P + ++
Sbjct: 121 -----VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAW 172
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
NL ++++G+ A ++ +V ++ P F+ Y LG V + F A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV-TLD-P-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
L + P++ L +Y + G I+ A + R+A ++ P A+ +L L
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL------KE 283
Query: 429 LDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ A A P + LNN+ I E+G E A + ++ AL
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-39
Identities = 75/404 (18%), Positives = 150/404 (37%), Gaps = 48/404 (11%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALG-------- 90
+ +A ++ G E Q+ + V +I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 91 ------------VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y+ LG + ++ + +E A ++Y A R+ ++ L
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+A G++E A A+ L+ + D + GR ++ Y +A++ P+ A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
+G G++ A F++A+ LDP ++A + L + + + A +
Sbjct: 172 -WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-----VAA 225
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
RA + P A+ LA ++ G L A+ P +Y NLA +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALK 282
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
KG +A Y ++ + L ++ + G+ A+ + K LE++P+
Sbjct: 283 EKGSVAEAEDCYNTAL-RLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L + Q G++++A ++A +I P A A+ ++G L
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-34
Identities = 72/457 (15%), Positives = 148/457 (32%), Gaps = 95/457 (20%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
+ +P EA L + + + A +E + A + P LA G
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEA-----IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
Q +AL P +L + G E+A Y+ +++ +P F
Sbjct: 116 DMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP-NFA 169
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
+ P A N+ +++E+G
Sbjct: 230 LSLSPNHAVV--------------------------------------HGNLACVYYEQG 251
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A +++ A+ E + +
Sbjct: 252 LIDLAIDTYRRAI------------------------------------ELQPHFPD--- 272
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
NLA L++ A Y L + D+ LA I + + N++ ++ L
Sbjct: 273 ----AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+AL+V ++ A S L + + +A ++ A
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 72/436 (16%), Positives = 143/436 (32%), Gaps = 71/436 (16%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA + GD+E A + M ++ +P + L + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ--EP-DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ P E LG++Y + GQ+++A E R A ++ P +I+L L++ D
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
A+ A+ +A V +++G + G E A + A+
Sbjct: 119 GAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAI----------- 162
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E N NL + + A
Sbjct: 163 -------------------------ETQPNFAV-------AWSNLGCVFNAQGEIWLAIH 190
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ + +++DAY+ L + K ++ AL ++ + L + +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
A +T+R A A +L N AL+ + + +A++ Y
Sbjct: 251 GLIDLAIDTYRRAI-ELQPHFPDAYCNLAN-----ALKEKGS--------VAEAEDCYNT 296
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726
+ ++ + N + E+G + + L+ + E NLA V
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQ 351
Query: 727 QGNFALAMKMYQNCLR 742
QG A+ Y+ +R
Sbjct: 352 QGKLQEALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 89/489 (18%), Positives = 161/489 (32%), Gaps = 104/489 (21%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+ + Y+ G A + + + +P+N L+ L+ + Q + + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLA 59
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+ P A A + L N + GQ + AL + P Y NLA + + GD
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGD 116
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
E A Y++++ + N P LG + LG A + K +E P+
Sbjct: 117 MEGAVQAYVSAL-QYN-PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440
LG ++ G+I A KA +DP A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--------------------------- 206
Query: 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500
N+G + E F+ A ++ AL
Sbjct: 207 -----------INLGNVLKEARIFDRAVAAYLRAL------------------------- 230
Query: 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560
L N V NLA + + A YR + + D
Sbjct: 231 ------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620
AY LA K + ++ + + N AL++ + ++L+ L +++ + + +A +R A
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 621 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680
+ + A +L + L+ + + L++A Y I + A +
Sbjct: 333 -EVFPEFAAAHSNLAS-----VLQQQGK--------LQEALMHYKEAIRISPTFADAYSN 378
Query: 681 AGVVLAEKG 689
G L E
Sbjct: 379 MGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 76/454 (16%), Positives = 153/454 (33%), Gaps = 72/454 (15%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + + GDF +A + ++ PDN L L I+ Q +++++ A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+P A+A+ +LG + + A + A P I+ N+ G
Sbjct: 62 QNPLLAEAYSNLGNVY------KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ E A Q++ AL + + +
Sbjct: 116 DMEGAVQAYVSAL------------------------------------QYNPDLYC--- 136
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
V +L LL+ + A Y + ++ A+ L + A+ + L+I
Sbjct: 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A+ ++ + +A LG++ + + +A + A + + +L
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLAC-----V 246
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ ++ A + Y R I A L EKG ++D +
Sbjct: 247 YYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
D NLA++ QGN A+++Y+ L + A LA +
Sbjct: 299 RLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ Q+ AI ++P+ + G +++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 74/458 (16%), Positives = 149/458 (32%), Gaps = 76/458 (16%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
LA+ + G E+ P + L+ + +++ + ++K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
+ P Y LG V + G + A+ ++ L + PD + L V G +E
Sbjct: 62 Q--NP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVL 451
A + A + +P DLG LL AL + A+ KA E P
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLL------KALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511
+N+G + +GE A F+ A+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV------------------------------------ 196
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
L N + NL +L++ A Y L ++ + LA +
Sbjct: 197 -------TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631
+ + L+I+ A+++ +P+A L + + +A++ + A + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSL 308
Query: 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 691
+L N R + +E+A LY + + A + VL ++G+
Sbjct: 309 NNLAN-----IKREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729
+ + + + D + N+ + +
Sbjct: 356 QEALMHYKEAIRISP-----TFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-21
Identities = 59/306 (19%), Positives = 119/306 (38%), Gaps = 45/306 (14%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D ++ +A G +E + L+ + VR + +L ALG
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQ------YNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 93 ----------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQ 136
++ LG + Q E A ++ KA +D + ++ G
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL----AIHHFEKAVTLDPNFLDAYINLGN 211
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196
+L ++A +A+ L ++ ACV + +G +++ Y+RA+++ P P
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
A + + G + +A + AL+L P + ++L LA + E A +
Sbjct: 272 DA-YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-----V 325
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
++A E++P A A + LA+ G+ + A+ ++ PT + +Y N+ +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNT 382
Query: 315 YHSKGD 320
D
Sbjct: 383 LKEMQD 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 2e-38
Identities = 53/408 (12%), Positives = 123/408 (30%), Gaps = 42/408 (10%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILE----------------EGSSPEIDEYYADVRY 80
+ + + Y ++ +++ L ++ E + + Y
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 81 ERIAILNA--LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
+ +A L Y + + E + Y + + K L
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELR-----RAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ + +LE D N+ G + + HP
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
L +G+ + ++ +AR+ F ++ +DP+ A + A ++ A +
Sbjct: 376 -WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA-----ISA 429
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
A ++ + +L G L + +++ A+ L
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAF 486
Query: 317 SKGDYEKAGLYY----MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+K D + A ++ + K + + + LG KL + +A+ + L +
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
++ A+ +Y+ A L ++ I P + A L L
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-36
Identities = 61/468 (13%), Positives = 136/468 (29%), Gaps = 44/468 (9%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
A +L + A K + +L E + DE A+ +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID--MHEPSTWVGKGQLLLAKGE 143
+ G++ T + A + Y +A +D +E + LL A E
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDR----AKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251
Query: 144 VEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + + D + +L + + E Y ++ + L
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL-LC 310
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRA 260
+ + + L++DP N++ +
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-----YLISNDL 365
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYH 316
+ +P A+ + ++ + A + P ++ A S+
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKI-------SEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
+G++++A Y + + + PY LG ++LG+ A + ++ +
Sbjct: 419 IEGEHDQAISAYTTAA-RLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKI-------DPRDAQAFIDLGELLISSDTGAAL 429
L LG + ++ A + A + + A + +LG L
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY------RKL 529
Query: 430 DAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ A L + V I +++ K A ++L
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 8e-33
Identities = 70/541 (12%), Positives = 154/541 (28%), Gaps = 68/541 (12%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACV 171
A K I P+ Q+ G+ +A +R + L V
Sbjct: 103 AAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161
Query: 172 E---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216
+ R ++ + + + ++ G L +A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE--ASMCYLRGQVYTNLSNFDRA 219
Query: 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
++ ++ AL +D + EA L L + + +L L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336
+ + E L+ N S A + + + ++
Sbjct: 280 NKTSHEDEL---RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-- 334
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P+ + Y + G+ +++ +P+ T A+G Y+ + +I +A+
Sbjct: 335 DPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 397 ELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455
K++ +DP+ A+I I + A+ A+ TA L + +G
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLG 448
Query: 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515
+ H + G A++ + +
Sbjct: 449 MQHMQLGNILLANEYLQSSY------------------------------------ALFQ 472
Query: 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575
L V FN + + I+ A +L + + + + L +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635
+I+ +N+ L ++ N + + + L A + A + A+ L
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMASDLLK 591
Query: 636 N 636
Sbjct: 592 R 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-27
Identities = 66/541 (12%), Positives = 137/541 (25%), Gaps = 83/541 (15%)
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
+LA + TG + + L S Y A D++ A +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 333 KEINKPHEFIFP-------------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y GQV L +F A +++ L + E
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439
L ++ E L + DA L L ++ + D + A L
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK--TSHEDELRRAEDYL 295
Query: 440 KKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497
+ + ++L F + F L
Sbjct: 296 S-SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL---------------------- 332
Query: 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557
E D +++ V L + + ++ ++ ++ +
Sbjct: 333 --------------EIDPYNLD-------VYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
+L + N + + +++ ++ ++ A + +A +
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431
Query: 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677
A+ L LG + A E +
Sbjct: 432 TAARL-FQGTHLPYLFLGM-----QHMQLGN--------ILLANEYLQSSYALFQYDPLL 477
Query: 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMK 735
N GVV K + + F + + W NL H Y + A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795
L DA + +A + + L ++ ++P+ A++
Sbjct: 538 ALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
Query: 796 K 796
+
Sbjct: 596 E 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-22
Identities = 61/578 (10%), Positives = 134/578 (23%), Gaps = 104/578 (17%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +Y + ++ L + + A L G +A+ + + +
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLA--QVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 234 LVALAVMDL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288
+A + A G K ++ + A+ + GQ +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213
Query: 289 QLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ A ++ L ++ D E + + + F+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + D ++ + + + L + + K +
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
IDP + +V E GE
Sbjct: 334 IDPYNL--------------------------------------DVYPLHLASLHESGEK 355
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ D + + W
Sbjct: 356 NKLYLISNDLV------------------------------------DRHPEKAVT-WLA 378
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
V + + + + A + + A++ A +I
Sbjct: 379 VGIYYLCVNKISE-----ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644
A ++ LG ++ + + A E +++ A D LG
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY-ALFQYDPLLLNELGV-----VAF 486
Query: 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704
N+ H + A L + G + +D + D Q
Sbjct: 487 NKSDMQTAIN-HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Query: 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
++ +V +A VY + LA+ L
Sbjct: 546 ST-----NDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 5e-22
Identities = 68/538 (12%), Positives = 139/538 (25%), Gaps = 91/538 (16%)
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSY---YNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L++Q + A V + + + LA+ Y GDY +A + N+
Sbjct: 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARA-KCLLTKEDLYNRSS 150
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LG 383
Y +KL D++ AL + D K G
Sbjct: 151 AC---RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 443
+Y L ++A+E ++A +D + +AF L + + K + K
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503
+ + E A
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----------------------------- 298
Query: 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563
+ +L A L + + IL +D Y
Sbjct: 299 --------NGLEKSSD-------LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623
A + N+ + + + +G L + +A+ F +S
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM- 402
Query: 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683
D + A + + + E ++A YT G+
Sbjct: 403 DPQFGPAWIGFAH-----SFAIEGE--------HDQAISAYTTAARLFQGTHLPYLFLGM 449
Query: 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743
+ G ++ + P + L V F + + A+ +QN L
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYD-----PLLLNELGVVAFNKSDMQTAINHFQNALLL 504
Query: 744 FYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
A L + + + + +L + + L+ ++ + +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-22
Identities = 65/455 (14%), Positives = 140/455 (30%), Gaps = 41/455 (9%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-----------EVLNNIG 455
A ++ L+ D AL+ K + + G
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEND 514
++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 208 QVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 574
+ + + L+ L D + + Y + + D L A R+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634
+ + + L+++ + + ++ + K D + + L++
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLAV 379
Query: 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694
G Y+ + + +A+ +++ A G A +G+ D +
Sbjct: 380 G--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 427 ISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLN 479
Query: 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789
L + Q A+ L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 8e-35
Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 18/302 (5%)
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
V + + + +V+E D + L + ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLG-KARQAFQRALQLDPENVEALVALAV--MDLQA 244
+ ++PS P + +G +G AR+ +A L+ A +A
Sbjct: 82 LVDLYPSNPVS-WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
++ A M A ++ C + + Y+ + T L E+ AL++ P
Sbjct: 141 HDQA-----MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED 192
Query: 305 SHSYYNLARSYHSKGDYEKAGLYY------MASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + G+++ A ++ + ++ ++ LG V KL +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
AL + L + P N T A+G+I+ +G E A + A + D + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 419 LL 420
+
Sbjct: 313 CI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-30
Identities = 60/375 (16%), Positives = 109/375 (29%), Gaps = 64/375 (17%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ I + + Q LD+ + +A ++ + ++E D ++A
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVME------KDPFHASCLPV 61
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
I L L + E +K + P +W G L
Sbjct: 62 HIGTLVELN--------------KANE----LFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103
Query: 142 GE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
G E A ++ PA + + ++ Y A Q+ C +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM- 162
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L IGL A + F +AL + PE+ + + V+ Q E + + A
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDA 219
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
E A+ NL
Sbjct: 220 LEKIK----------------------------AIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y +A Y+ + P Y +G + +G+F +A+ F L + D+ ++
Sbjct: 252 YAEALDYHRQ-ALVLI-PQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 381 ALGHIYVQLGQIEKA 395
LGH +A
Sbjct: 309 MLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 54/339 (15%)
Query: 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ + + ++ ++N+ ++ A + + + ++ P + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI 63
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL---QANEAAGIRKGMEKMQRAF 261
+L + + + + L P N + A+ L NE A + +A
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA-----RRYLSKAT 118
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A + S+ + ++
Sbjct: 119 TLEKTYGPA-------------------------------------WIAYGHSFAVESEH 141
Query: 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381
++A Y + ++ K P +G + + A F + L I P++ +
Sbjct: 142 DQAMAAYFTAA-QLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA---FKTARTL 438
+G + Q G+ + A++ A + + ++ G + A
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
++A +P + IG IH G FE+A F AL
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 4e-22
Identities = 48/349 (13%), Positives = 101/349 (28%), Gaps = 49/349 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+ + + + LA ++ + +LT + P + +
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGT 65
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYP 373
+ V P + ++ +G L +G A K +
Sbjct: 66 LVELNKANELFYLSHKLVD--LYPSNPV-SWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 433
A GH + + ++A AA++ + +G + K
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY------GLTNNSK 176
Query: 434 TARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491
A +A P V++ +GV+ F+ GE+++A + F DAL
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL---------------- 220
Query: 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551
+ +L NL + ++ A +R
Sbjct: 221 ------------------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
L Y + I N + +++ + AL + +++MLG
Sbjct: 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 41/307 (13%), Positives = 88/307 (28%), Gaps = 34/307 (11%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P + ++ +G G + AR L KA G +
Sbjct: 85 LYPSNPVSWFAVGCYY--LMVGHKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVES 139
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM---LQFKDMQLFHRFENDGNH-V 518
E + A ++ A L + L++ E + +
Sbjct: 140 EHDQAMAAYFTAA-------QLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
Query: 519 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---------FKYQDYVDAYLRLAAIA 569
+ V+ + + Q + A + L + L +
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629
+ +++ +AL + + + S +G + ++ A + F A D++
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTF 305
Query: 630 ATLSLGN 636
+ LG+
Sbjct: 306 SVTMLGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 7e-14
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 64/381 (16%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ T + ++ +N + + +L + + +L + DP A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGI 479
+ A + F + L+ +G + G E A + A
Sbjct: 67 --VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKA----- 117
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
T L+ A W
Sbjct: 118 --TTLEKT------YGPA------------------------WI------AYGHSFAVES 139
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
+ A Y + L + NN +L+ ++AL + + P + +
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF---AALRNEKRAPKLEATH 656
G + +N +W A++ F A + + T+ R K+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-------- 251
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
+A + + + +V N + G + + G F+ + D F
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-----DDTFS 306
Query: 717 WINLAHVYFAQGNFALAMKMY 737
L H + A
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 37/278 (13%), Positives = 78/278 (28%), Gaps = 27/278 (9%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
V+ +LA D L +++ K + N L ++ +
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 587 KVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 645
+ P + +G + A+ A+ + A ++ G+ +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTYGPAWIAYGH-----SFAV 137
Query: 646 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705
E ++A Y G+ +++ F+Q A
Sbjct: 138 ESE--------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189
Query: 706 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-------AQILLYLAR 758
P V + V F G + A K + + L K + +L L
Sbjct: 190 PED-----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 759 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ +++ + +A+ L P N + G
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 39/371 (10%), Positives = 108/371 (29%), Gaps = 66/371 (17%)
Query: 433 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 490
K + T++ ++ + + ++V+ ++ H+ +F+ ++ +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM--------------- 49
Query: 491 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550
E D H + L L + E L
Sbjct: 50 ---------------------EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHK 81
Query: 551 ILFKYQDYVDAYLRLAAIAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 609
++ Y ++ + + + + +++A + Y A G +
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669
+A + A+ L +G + A+ +++ +
Sbjct: 142 DQAMAAYFTAAQL-MKGCHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALS 187
Query: 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYF 725
+ + + GVV + G++ ++ F ++ + + + NL HV
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785
+A A+ ++ L +A + H +++ A+ L +
Sbjct: 248 KLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 786 LRFDAGVAMQK 796
G ++
Sbjct: 306 SVTMLGHCIEM 316
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-34
Identities = 82/578 (14%), Positives = 164/578 (28%), Gaps = 69/578 (11%)
Query: 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112
Q+ SP + YA L G ++
Sbjct: 4 MNGEPDIAQLKG--LSPSQRQAYAVQ-------LKNRGNHFFTAKNFN-----------E 43
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A +YY A +D +EP + ++ G++E+ LE D+ ALL +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPE 229
+ G ++D++ +I + K + R Q+ P
Sbjct: 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Query: 230 NVEALVAL-----AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + N ++ + A + +AN
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
L+ + + + + K + A + S+ ++
Sbjct: 224 MYHSLLSANTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESI-NLHPTPNS--- 278
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
++P + +I L LL F + + + P EV I ++G
Sbjct: 339 LNPENVYPYIQLACLL------YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+F++A + + A L + + K +V +
Sbjct: 393 DFDTAIKQYDIA------KRLEEVQEKIHVGIGPL--------------IGKATILARQS 432
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
++ + + A L A + LA + + +IEL
Sbjct: 433 SQDPTQLDEEKFNA-------AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 583 NEALKVNGKYPNALSMLGDLEL-KNDDWVKAKETFRAA 619
++ + L E K ++A A
Sbjct: 486 EDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-31
Identities = 70/460 (15%), Positives = 132/460 (28%), Gaps = 55/460 (11%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
+ I+ Y G +E+ + LE I ++ R + +LG +
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLGNFTDAM 113
Query: 93 --YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L E + ++ + Q+L + +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
F LE N Y + ALQ S + L
Sbjct: 174 FDSHLEVSSVN------------TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
A L AL + A +Q + ++P
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT- 275
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ +LA + + A+ P +YY+ + Y DY+ A
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVD---LNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
+ + +N E ++PY L + K G F + F + +P E I
Sbjct: 333 FQKAQ-SLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL----------ISSDTGAALDAFKTART 437
G + A + A +++ + + +G L+ T + F A
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 438 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
LL KA E P + + + + + + A + F+D+
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 5e-30
Identities = 58/391 (14%), Positives = 118/391 (30%), Gaps = 31/391 (7%)
Query: 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG----KI 99
L + ++ + L + + ++E + +L + ++ G +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178
Query: 100 ETKQREKEEHFILATQYYNKASRIDMHEPSTWV--GKGQLLLAKGEVEQASSAFKIVLEA 157
E ++ A + A + L + SA +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217
+ AL F + D+ + ++ +HP+ I L + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL--TLADKENSQEFF 296
Query: 218 QAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ FQ+A+ L+PE M LQ + A E Q+A + P LA
Sbjct: 297 KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA-----KEDFQKAQSLNPENVYPYIQLA 351
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-- 333
+ G+ E PT A +GD++ A Y + +
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 334 -----------EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + QL F +A+ K E+ P + + L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+ +Q+ +I++A EL +A + +
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-25
Identities = 68/484 (14%), Positives = 147/484 (30%), Gaps = 40/484 (8%)
Query: 319 GDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
G + ++ + G +F A+ ++ +E+ P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTAR 436
+ Y+ G +EK E KA +I P ++A + S + A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VL 119
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
+L +L K E+ + T L S +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL--EQIHDTVAASVLYRLILFK 554
S + + + ++ ++ + +A L + + +
Sbjct: 180 VSSVN-TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614
++ A +NNL + L+ E++ ++ N+ L ++ + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297
Query: 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674
F+ A + + G + + AKE + + + N
Sbjct: 298 FFQKAV-DLNPEYPPTYYHRGQ-----MYFILQD--------YKNAKEDFQKAQSLNPEN 343
Query: 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734
+Y +L ++G+F S+ F + + F +P+V A + +G+F A+
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKL-----KFPTLPEVPTFFAEILTDRGDFDTAI 398
Query: 735 KMYQNCLR------KFYYN--------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
K Y R K + T T + E++ K L +A L
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 781 PSNY 784
P +
Sbjct: 459 PRSE 462
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 9e-25
Identities = 68/681 (9%), Positives = 170/681 (24%), Gaps = 164/681 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168
+ + + + +G +A ++ +E D +
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228
+ + G +EF +AL++ P A L LG A L L+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKA-LLRRASANESLGNFTDAMFDLS-VLSLNG 123
Query: 229 ENVEALVALAVMDLQANEAAGIRKGM--EKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
+ A + + +A + + R ++ P ++
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----------- 172
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ S ++ +Y+ A +++ + + +
Sbjct: 173 ------------------IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY-LV 213
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + S L+ + + L G + + AQ LL+++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 466
P + + +K +
Sbjct: 274 PTP---------------------------------------NSYIFLALTLADKENSQE 294
Query: 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526
+ F+ A+ + + +
Sbjct: 295 FFKFFQKAV------------------------------------DLNPEYPP------- 311
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
++ ++ + D A ++ + V Y++LA + + S NE
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
P + ++ D+ A + + A
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK-------------------------- 405
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ E H+ ++ + L + ++ +F+ + L T+ E
Sbjct: 406 RLEEVQEKIHVGIG------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459
Query: 707 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766
+ I LA + A++++++ T + A T EA +
Sbjct: 460 -----RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE--KLQATTFAEAAKI 510
Query: 767 QD---CKKSLLRAIHLAPSNY 784
Q + + L + Y
Sbjct: 511 QKRLRADPIISAKMELTLARY 531
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 65/398 (16%), Positives = 125/398 (31%), Gaps = 73/398 (18%)
Query: 43 WLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98
L + ++ G+ + QF ++ D Y R + +GK
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRR-------ATVFLAMGK 52
Query: 99 IETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158
+ A K + M + + +G LLL +G++++A FK VL+++
Sbjct: 53 SK-----------AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 159 RDNVPA---------------LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
L QA F+ Y+ ++ F + L+V R
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELR 160
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
C K G+ KA + A +L +N EA ++ + Q + + +++ ++
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKL 217
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ K + A G Y
Sbjct: 218 DQDHKRCFAHYKQ-------------------------VKKLNKLIESAEELIRDGRYTD 252
Query: 324 AGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A Y + +K E + + + K A+ +VL++ PDN LK
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Y+ ++A + A + + D Q L +
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 61/366 (16%), Positives = 124/366 (33%), Gaps = 51/366 (13%)
Query: 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186
+ + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + + A RL G K G+L +A F++ L+ +P E A +
Sbjct: 62 KVIALKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES-------- 112
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ +A E+ + AL+ + + L V +
Sbjct: 113 ---------QLVKADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEV---CVWDAE 155
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
A + +G+ KA A+ K K + +Y + + +LGD +L+
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKL--KS-DNTEAFYKISTLYYQLGDHELSLSEVR 212
Query: 367 KVLEIYPDNCETLKALGHI------------YVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
+ L++ D+ + ++ G+ A K +P A+ +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 415 DLGELLISSDTGAALDA---FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 469
E + A + + + P + L + + + ++ A Q
Sbjct: 273 RSKERI-----CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Query: 470 SFKDAL 475
++ A
Sbjct: 328 DYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 1e-21
Identities = 58/465 (12%), Positives = 138/465 (29%), Gaps = 120/465 (25%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ L + + G A + A+V + + P + YY V L +G ++AL +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAV-DGD-P-DNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
KV+ + D GH+ ++ G++++A++ +K K +P + + +L+ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-- 119
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
++ L + + F+ ++ +A L
Sbjct: 120 ---------------------MQRLRSQALDAFDGADYTAAITFLDKIL----------- 147
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E EL + + I D
Sbjct: 148 -------------------------EVCVWDAELRELRAECFIKEGEPRKAISD------ 176
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ D +A+ +++ + + +LS+ V E LK++ + + +
Sbjct: 177 -LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---- 231
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
K + L + R A Y
Sbjct: 232 -------------------KKLNKLIESAE-----ELIRDGR--------YTDATSKYES 259
Query: 667 VI------VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
V+ ++T ++ + + + ++V + + + +
Sbjct: 260 VMKTEPSVAEYTVRSK--ERICHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDR 312
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765
A Y + + A++ Y+ + D QI L + +Q
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 1e-20
Identities = 55/434 (12%), Positives = 120/434 (27%), Gaps = 129/434 (29%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAF 261
G GQL A F A+ DP+N A A + + ++AA + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVI 64
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A +G
Sbjct: 65 ALKMDFTAA-------------------------------------RLQRGHLLLKQGKL 87
Query: 322 EKAGLYY------------MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
++A + + + + D+ +A+T +K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF---------------- 191
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
I ++++ G+ E + ++ L LD
Sbjct: 192 ----------------------YKISTLYYQLGDHELSLSEVRECL-------KLDQ--- 219
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549
D +K ++ ++ L R + A+ Y
Sbjct: 220 ----DHKRCFAHYKQVKKLNKLIESAE----------ELIRDGRYTD-------ATSKYE 258
Query: 550 LILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605
++ + + R+ +I + +E L++ NAL + L
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 606 NDDWVKAKETFRAA 619
+ + +A + + AA
Sbjct: 319 EEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-19
Identities = 55/455 (12%), Positives = 115/455 (25%), Gaps = 108/455 (23%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ A G + ++G+
Sbjct: 66 LKMDFTAA--------------------------------------RLQRGHLLLKQGKL 87
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ A FK L + S + + QL + ++ ++
Sbjct: 88 DEAEDDFKKVL----------------KSNPSEQEEKEAESQLVK-----ADEMQRLRSQ 126
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
F+ A I IL + A + +I +
Sbjct: 127 ALDAFDGADYTAAITF-------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644
A K+ A + L + D + R L L + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCFA 226
Query: 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704
+ K+ KL L G++ + + V +
Sbjct: 227 HYKQVKKLNKLIES-----------------------AEELIRDGRYTDATSKYESVMKT 263
Query: 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764
SV + H + A+++ L+ + L A + E
Sbjct: 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEE 320
Query: 765 QWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQK 796
+ + + A ++ A +++
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 619 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 789
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 790 AGVAMQKFSASTLQKTRR 807
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-33
Identities = 42/373 (11%), Positives = 100/373 (26%), Gaps = 22/373 (5%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ + V A+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 228 PENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P+ V A+ L+ + + + +A + P +A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ + A +T P + + + + + ++ + + + +
Sbjct: 260 RLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQAH-GLT--PQQVVAI 313
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + L + L + + P + + L +++ +L +A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 463
P A G AL+ + +L +A P + + +
Sbjct: 374 TPEQVVAIASNGGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427
Query: 464 FESAHQSFKDALG 476
+ A G
Sbjct: 428 VQRLLPVLCQAHG 440
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 43/374 (11%), Positives = 100/374 (26%), Gaps = 28/374 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V + + +A + + G A V++
Sbjct: 141 VAIASHDGGKQALETVQA----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
V A+ + L +A + P AI G + L
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQAL 255
Query: 211 GQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268
+ + +A L P+ V A+ + L+ + + + +A + P
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL-----LPVLCQAHGLTPQQV 310
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+A+ + + A +T P + + + + ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388
+ + E + G + L + L + + P+ + +
Sbjct: 368 CQAH-GLT--PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 448
L +++ +L +A + P+ A G AL++ + A +
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGR------PALESIVAQLSRPDPALAALT- 477
Query: 449 EVLNNIGVIHFEKG 462
N+ V G
Sbjct: 478 ---NDHLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-31
Identities = 40/364 (10%), Positives = 94/364 (25%), Gaps = 22/364 (6%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ + A V++ V A+ +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
L +A + P AI + L + +A L PE V A+ +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 237 LAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
L+ + + + +A + P +A+ + + A
Sbjct: 180 NGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+T P + + + + ++ + + + +
Sbjct: 235 HGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQA 288
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
L + L + + P + + G L +++ +L +A + P+ A
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348
Query: 415 DLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 472
AL+ + +L +A P + + + G +
Sbjct: 349 SHDGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
Query: 473 DALG 476
A G
Sbjct: 403 QAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 7e-31
Identities = 55/512 (10%), Positives = 132/512 (25%), Gaps = 65/512 (12%)
Query: 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171
+A + ++D + +G + + ++ L + V A+
Sbjct: 22 VAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG 81
Query: 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231
+ L +A + P AI + L + + +A L PE V
Sbjct: 82 KQALETVQRLLPVLCQAHGLTPQQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 232 EALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
A+ + L+ +A + + +A + P +A+ +
Sbjct: 141 VAIASHDGGKQALETVQAL-----LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A +T P + + + + ++ + + + G
Sbjct: 196 VLCQAHGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNG 249
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L + L + + P + + L +++ +L +A + P+
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Query: 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 467
A G AL+ + +L +A P + + + +
Sbjct: 310 VVAIASNGGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527
A V +
Sbjct: 364 LPVLCQAH------------------------------------GLTPEQVVAIASNGGG 387
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
L + + A L + V A +A +Q + ++ +A
Sbjct: 388 KQALETVQRLLPVLCQAHGLT-------PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440
Query: 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+ + A++ G + V A
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 9e-24
Identities = 52/534 (9%), Positives = 120/534 (22%), Gaps = 87/534 (16%)
Query: 211 GQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
L A + LQLD + + AV + A A + P
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA-------PLNLTPE 70
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+A+ + + A +T P + + + + ++
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLP 127
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
+ E + + L ++ L + + P+ + + G
Sbjct: 128 VL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 446
L +++ +L +A + P+ A G AL+ + +L +A
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK------QALETVQRLLPVLCQAHGLT 238
Query: 447 P--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504
P + + + G + A
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAH----------------------------- 269
Query: 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564
V + L + + A L V A
Sbjct: 270 -------GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIAS 315
Query: 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624
+A +Q + ++ +A + + A++ + + + A
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT 374
Query: 625 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684
+ A S G K +++ + + + A
Sbjct: 375 PEQVVAIASNGG-------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
+ Q Q + A + +
Sbjct: 422 KQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGRPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 45/529 (8%), Positives = 113/529 (21%), Gaps = 78/529 (14%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317
++ + + H LT L +T P + + + +
Sbjct: 28 GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT---PEQVVAIASHDGGKQA 84
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
++ + + + + L + L + + P+
Sbjct: 85 LETVQRL---LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437
+ + L ++ +L +A + P A G AL+ +
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK------QALETVQRLLP 195
Query: 438 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495
+L +A P + + + G + A G L
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG-------LTP--------- 239
Query: 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555
V + L + + A L
Sbjct: 240 --------------------QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP------ 273
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
V A + +A +Q + ++ +A + + A++ G + + +
Sbjct: 274 -QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
A + A S K +++ + + +
Sbjct: 333 LCQAH-GLTPQQVVAIASHDG-------------GKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
A G + Q + + A +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQRLLP 433
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
+ + E A+ +++
Sbjct: 434 VLCQAHG--LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 39/454 (8%), Positives = 90/454 (19%), Gaps = 38/454 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ + A L++ + G + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A AL+ + +L +A P + + +
Sbjct: 67 LTPEQVVAIASHDGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A G L + L L
Sbjct: 121 TVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQALLPVLCQA---HGLTP 171
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
+V + + + + + V A +A +Q + ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A + + A++ G + + + A + A S
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASNSG-----G 285
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + +++ + + + A G + Q
Sbjct: 286 KQALET--------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
Q + A + + +
Sbjct: 338 GLTP-----QQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGGGKQA 390
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
E Q L +A L P Q
Sbjct: 391 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 41/492 (8%), Positives = 102/492 (20%), Gaps = 105/492 (21%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H ++ + + + AG +++ G + +R+ALT
Sbjct: 4 HHHHHQWSGARALEALLTVAGELR-GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
L + P+ + + L +++ +L +A + P+
Sbjct: 63 --APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ--------------- 105
Query: 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484
+ + + + A
Sbjct: 106 -----------------------VVAIASHDGGKQALETVQRLLPVLCQAH--------- 133
Query: 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544
L +V + + + + A
Sbjct: 134 ----------------------------------GLTPEQVVAIASHDGGKQALETVQAL 159
Query: 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604
+ + V A +A +Q + ++ +A + + A++ G +
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664
+ + A + A S G + + +++ +
Sbjct: 220 ALETVQRLLPVLCQAH-GLTPQQVVAIASNGG-----GKQALET--------VQRLLPVL 265
Query: 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ + A + Q V +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQV-----VAIASNGGGK 320
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
A + + + E Q L +A L P
Sbjct: 321 QALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 785 TLRFDAGVAMQK 796
G Q
Sbjct: 379 VAIASNGGGKQA 390
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 61/383 (15%), Positives = 120/383 (31%), Gaps = 39/383 (10%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFIL------------ATQYYNKASRIDMHEPSTWVGK 134
++ GV + E+H L A ++ A D + +
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ LA G+ + A V++ D A L + + +G+ ++ + +K+ L+ +PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 195 CPGAIR--------------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
L + G A + L++ + E A
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL----- 295
++ E RK + ++ A ++ A ++ ++ G H L L
Sbjct: 187 FIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 296 ---AVTNHGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQ 350
++ K A G Y A Y + +K E + + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K A+ +VL++ PDN LK Y+ ++A + A + + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 411 QAFIDLGELLISSDTGAALDAFK 433
Q L + D +K
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYK 386
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 64/511 (12%), Positives = 131/511 (25%), Gaps = 115/511 (22%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
G L + Q+ + + L G+ +D+L + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A +G+ A + +QL + A + + + A
Sbjct: 55 GDPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ ++ + P + +
Sbjct: 114 -----EDDFKKVLKSNPSENEEKEAQSQL----------------------IKSDEMQRL 146
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
+ A + GDY A + ++ E + +K G+ R A+++ +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---RELRAECFIKEGEPRKAISDLKAA 203
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
++ DN E + +Y QLG E + +R+ K+D + F
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-------------- 249
Query: 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488
+K + L K G + A ++ +
Sbjct: 250 --HYKQVKKLNKL----------IESAEELIRDGRYTDATSKYESVM------------- 284
Query: 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548
+ + + E V + + V A +
Sbjct: 285 -----------------------KTEPSIAEY---TVRSKERICHCFSKDEKPVEAIRVC 318
Query: 549 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL---- 604
+L D V+A A +I+ A + N L +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378
Query: 605 -KNDDWVKAKETFRAASDATDGKDSYATLSL 634
+ D+ K R A + +Y L+L
Sbjct: 379 SQKRDYYKILGVKRNAKKQ-EIIKAYRKLAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 5e-22
Identities = 58/492 (11%), Positives = 127/492 (25%), Gaps = 119/492 (24%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H +++ ++ Y ++ + ++ K + LG+ L G AL+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-------MADVEK-------HLELGKKLLAAGQLADALSQ 48
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
F ++ PDN +++ +G+ + A L K ++ A
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA------------ 96
Query: 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484
G + ++G+ + A FK L
Sbjct: 97 --------------------------RLQRGHLLLKQGKLDEAEDDFKKVL--------- 121
Query: 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544
K+ + + Q ++ L + A D AA
Sbjct: 122 --KSNPSENEEKEAQSQLIKSD-----------------EMQRLRSQALNAFGSGDYTAA 162
Query: 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604
IL + A + +I + A K+ A + L
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664
+ D + R L L + ++ + K+ KL
Sbjct: 223 QLGDHELSLSEVREC------------LKL-DQDHKRCFAHYKQVKKLN----------- 258
Query: 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ L G++ + + V + + + H +
Sbjct: 259 ------------KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR-SKERICHCF 305
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
A+++ L+ + L A + E + + + A ++
Sbjct: 306 SKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 785 TLRFDAGVAMQK 796
+R A +
Sbjct: 364 QIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 6e-19
Identities = 49/374 (13%), Positives = 110/374 (29%), Gaps = 49/374 (13%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY-YTYLG 97
L KQGK+++ F+++L+ + + + + ++ + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
+ A + +K + + + + + + +GE +A S K +
Sbjct: 151 LNAFGSGDYTA----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-----------GIGLC 206
DN A + + + G + SL + L++
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ G+ A ++ ++ +P E V + + ++ P
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
AL A + + ++ + H L ++ +K
Sbjct: 327 DNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
Y + VK K E I Y L L+ +PDN + +
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLA-------------------LQWHPDNFQNEEEKKKA 424
Query: 386 YVQLGQIEKAQELL 399
+ I A+E+L
Sbjct: 425 EKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 558 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 594
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 649
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 650 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 769
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 770 KKSLLRAIHLAPSN 783
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 68/447 (15%), Positives = 133/447 (29%), Gaps = 80/447 (17%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
L + E + E+ T++ N+ + M L KG+ E A +
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCN-----LLAYLKHLKGQNEAALECLRKAE 78
Query: 156 EADRDNVPALLGQ---------ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR------ 200
E + A V ++ GR SD + + V R
Sbjct: 79 ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138
Query: 201 ---LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257
G + Q +A+ F++AL+ P+N E LA+ + + + ++ +
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 258 QRAFEIYPYCAMALNYLANHFF----FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
++A + P LA + E+L E AL P + + A+
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAK 255
Query: 314 SYHSKGDYEKA---------------------GLYYMASVKEINKPHEFIFPYYGLGQVQ 352
Y K + +KA G Y A V ++ E G+ +
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE-----NGMYGKR 310
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-- 410
L A+ + +K E + L ++ Q E+A+ +K +
Sbjct: 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Query: 411 -QAFIDLGELL-------------------ISSDTGAALDAFKTARTLLKKAGEEVP--I 448
+ G I+ + + + K +
Sbjct: 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS 430
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDAL 475
E L+ + + + + A + + L
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 4e-29
Identities = 64/433 (14%), Positives = 143/433 (33%), Gaps = 51/433 (11%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
+ + + ++A +G+ E + L + E+ +
Sbjct: 44 FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y ++G++ Q ++ + ++ + RI+ E G +L + E+A F+
Sbjct: 104 YYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 153 IVLEADRDNVPALLGQACVEF---NRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGL--C 206
LE N G A + N ++++ ++A++++P + L + L
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
R + + G+ + + AL+ P + L + A + +E K +E +++A E P
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN 279
Query: 267 CAMALNYLANHFFFTGQHFL------------VEQLTETALA----VTNHGPTKSHSYYN 310
A + + + + +L A+A
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL-KLGDFRSALTNFEKVL 369
LA + YE+A Y+ + P + G QL ++ A+ +F + +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 370 EIYPDNCETLKA------------------------LGHIYVQLGQIEKAQELLRKAAKI 405
+I + E K L + ++++A E + +
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 406 DPRDAQAFIDLGE 418
A GE
Sbjct: 460 GSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 3e-21
Identities = 68/494 (13%), Positives = 145/494 (29%), Gaps = 74/494 (14%)
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPS 194
L+ + ++ E A + A ++ +G+ +LE ++A ++
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 195 CPGA--------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Y +G+L + + + + +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ G + +RA + E AL P
Sbjct: 144 WTRLKCGGNQNERAKVCF---------------------------EKALEKK---PKNPE 173
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG----QVQLKLGDFRSAL 362
LA + + ++ + + I + + L +++ + +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 420
E+ LE P + L++ Y + + +KA ELL+KA + P +A +G
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 421 -----------ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 467
L+ A LKKA E V + + +H ++E A
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527
F+ L K + + ++ + V++ K
Sbjct: 354 EYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSRE 407
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
+ L++I ++ L K +A LA + + +Q + E L+
Sbjct: 408 KEKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 588 VNGKYPNALSMLGD 601
P+A S G+
Sbjct: 459 SGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 4e-17
Identities = 64/492 (13%), Positives = 131/492 (26%), Gaps = 116/492 (23%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH------EFIFPYYGLGQVQLKL 355
K+ LA H KG E A + + I + H + + V +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 356 GDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLG--QIEKAQELLRKAAKI 405
G +KV + ++ E G ++ G Q E+A+ KA +
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGV----IHF 459
P++ + L D + A L++A P + + + +
Sbjct: 168 KPKNPEFTSGLAIASYRLD---NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519
E E + ++AL E +
Sbjct: 225 EGEEEGEGEKLVEEAL------------------------------------EKAPGVTD 248
Query: 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI----------- 568
VL + A+ + + A L + L + + ++
Sbjct: 249 -------VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301
Query: 569 --------AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA- 619
K + ++ + +A + N S+L L D + +A+ F+
Sbjct: 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 620 -SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 678
+ T L GN+ + ++ E +A H + ++
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQ-MKCEDKA----IHHFIEGVKIN--------QKSREK 408
Query: 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
L + + +SK+ + LA + A + +
Sbjct: 409 EKMKDKLQKIAKMRLSKN--------------GADSEALHVLAFLQELNEKMQQADEDSE 454
Query: 739 NCLRKFYYNTDA 750
L A
Sbjct: 455 RGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 4e-11
Identities = 63/486 (12%), Positives = 126/486 (25%), Gaps = 92/486 (18%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
L + + L DF + + L ++ GQ E A E LRKA ++
Sbjct: 23 NLMEGENSLDDFEDKVFY-RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 407 PRDAQAFIDLGELLISSDTGAA---LDAFKTARTLLKKAGEEVP----------IEVLNN 453
++ ++ L+ + + + + K E+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 454 IG--VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511
G + + E A F+ AL
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKAL------------------------------------ 165
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY----LRLAA 567
E + E + L + + A R + D L+L
Sbjct: 166 EKKPKNPEFTSGLAIASYRL----DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221
Query: 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627
+ + +LV EAL+ + L + D+ KA E + A + +
Sbjct: 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NN 280
Query: 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT-------RVIVQHTSNLYAANG 680
+Y +G Y A + + K EL + + + +
Sbjct: 281 AYLHCQIGC-CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740
+ A Q++ ++ F + V Q+ + + A+ +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEG 398
Query: 741 LR---KFYYNT-------------------DAQILLYLARTHYEAEQWQDCKKSLLRAIH 778
++ K D++ L LA E+ Q + R +
Sbjct: 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 779 LAPSNY 784
Sbjct: 459 SGSLIP 464
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 590 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 693
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 749
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 7e-29
Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 62/401 (15%)
Query: 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80
P + S + ++ + +F K E +E + + +
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
+ + Y R EE N+ ++ + G
Sbjct: 198 YK----RSPESYDKADESFTKAARLFEE----QLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
K + A K +E V + + A + +R ++ ++ +AL++ +
Sbjct: 250 KNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-Y 307
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
G + L +A + F +A +LDPEN+ + LA + + N+ A
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK---FDDCETLFSEA 364
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+P A K D
Sbjct: 365 KRKFPEAPEV-------------------------------------PNFFAEILTDKND 387
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---------LGDFRSALTNFEKVLEI 371
++KA Y ++ E+ + Y G+ + K + +F A EK ++
Sbjct: 388 FDKALKQYDLAI-ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
P + + L + +Q I++A L ++A + +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-27
Identities = 50/448 (11%), Positives = 134/448 (29%), Gaps = 74/448 (16%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V+Y+ L + ++ + KA + + + G+ A
Sbjct: 40 VFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Query: 151 FK---IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--------- 198
+ + + ++ +L + + + + A
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 199 ---IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG------ 249
+ + + + + + + D E + L L ++ + A
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 250 ---IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
+ ++K ++ A++L + F + + A+ + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVN 271
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
SY +A + D + Y+ ++ +++ YY GQ+ L ++ A +F+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKAL-KLDS--NNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL------ 420
K E+ P+N L + + + + + L +A + P + E+L
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 421 -------------------------------ISSDTGAALDAFKTARTLLKKAGEEVP-- 447
++ F A LL+KA + P
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448
Query: 448 IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ + + ++ + + A F+++
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-25
Identities = 59/391 (15%), Positives = 130/391 (33%), Gaps = 42/391 (10%)
Query: 69 PEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP 128
+ ++ + ER A+ G I+T E L+TQ + + P
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE---LSTQPAKERKDKQENLP 159
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------QACVEFNR--G 176
S + E + + EAD++ + L +A F +
Sbjct: 160 SV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV- 235
+ + L+ ++ ++ G+ ++ A + ++A++L P V + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISL-EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 236 -ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
AL + D + +A ++ + + F + + + A
Sbjct: 276 MALIMADRNDSTEY-----YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+ P Y LA + + ++ + + + P E ++
Sbjct: 331 KELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFP-EAPEVPNFFAEILTD 384
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---------LGQIEKAQELLRKAAKI 405
DF AL ++ +E+ + + + + +A LL KA+K+
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 406 DPRDAQAFIDLGELLISS-DTGAALDAFKTA 435
DPR QA I L ++ + D A+ F+ +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 4e-24
Identities = 75/506 (14%), Positives = 157/506 (31%), Gaps = 50/506 (9%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ + + + Y+ A YY ++ E+ + F Y L + +GD +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKEDPVF---YSNLSACYVSVGDLKKV 58
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELL 420
+ K LE+ PD + L LG+ A L + D DA L L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVL-----------NNIGVIHFEKGEFESAHQ 469
+ F T E F + E
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 470 SFKDAL-GDGIWLTLLDSKTKTYVIDASASMLQF-KDMQLFHRFENDGNHV-ELPWNKVT 526
++ ++ D + L + K + F K +LF + N +L
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L + +D + A + + + V++Y+ +A I RN+ ++AL
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
K++ + G + ++ +A + F A + D ++ + + L E
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC-----LAYRE 351
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ + + L++ + N +L +K FD + + E +
Sbjct: 352 NK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 707 GSVFVQMPDVWINLAHVY---------FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
++ +++ +A + NF A + + + Q + LA
Sbjct: 404 -----KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLA 456
Query: 758 RTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ + E + + LA +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTM 482
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 63/468 (13%), Positives = 133/468 (28%), Gaps = 44/468 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G + + A+ + LE+ D L YV +G ++K E+ KA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463
+ P ++ + A+ IE + + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS--IEPMLERNLNKQAMSK 125
Query: 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523
+ A L+ +K + + S+ F F+ +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA--SFFGIFKPELT------- 176
Query: 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583
N E ++ L + + KA + ++ N
Sbjct: 177 ----FANYDESNEA-----DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643
E K+ K +L G + +D + A E + A + +SY Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY--------IYMALI 279
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
++ + + + + ++N G + +D + F + +E
Sbjct: 280 MADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ +I LA + + + F ++ RKF ++ + A +
Sbjct: 333 LDPEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDK 385
Query: 764 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 811
+ K AI L + + K + T T E
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-21
Identities = 60/479 (12%), Positives = 139/479 (29%), Gaps = 73/479 (15%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
KG + + A + LE D V + + G +E +AL+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVALAVMDLQANEAAG 249
+ P + L LG+ A +L D + L E
Sbjct: 68 LKPDYSKVL-LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML--------ERNL 118
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
++ M K++ F L+ + + T++A S++
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA----------SFF 168
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEK 367
+ + + +Y+++ + ++ ++ Y F L +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDST 287
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
+ F A LK V + G ++F ++ A + F A
Sbjct: 288 EYYNYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAK----------- 331
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E D ++ + + + +
Sbjct: 332 -------------------------ELDPENIFPYIQLACLAYRENKFDDCETL------ 360
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605
+ K+ + + A I +N+ +++ + A+++ K + L K
Sbjct: 361 -FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-20
Identities = 75/503 (14%), Positives = 156/503 (31%), Gaps = 74/503 (14%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
AL + F +Y D++++Y AL++ + C +G L K +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEM 61
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------PYCAMAL 271
+AL+L P+ + L+ A +G+ K A A
Sbjct: 62 STKALELKPDYSKVLLRRAS----------ANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHG-------------------PTKSHSYYNLA 312
L + L E+ + A T S++ +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEKVLE 370
+ + +Y+++ + ++ ++ Y F L + +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAAL 429
+ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYY 290
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
+ F A LK V + G ++F ++ A + F A L
Sbjct: 291 NYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKA------KELDPENIF 339
Query: 490 TYVIDASA--SMLQFKD-MQLFHR-FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 545
Y+ A +F D LF E+P +L + + +
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ----- 394
Query: 546 VLYRLILFKYQDYVDAYLRLAAI---------AKARNNLQLSIELVNEALKVNGKYPNAL 596
Y L + Y+ +A + N + L+ +A K++ + A
Sbjct: 395 --YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452
Query: 597 SMLGDLELKNDDWVKAKETFRAA 619
L ++L+ +D +A F +
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 3e-19
Identities = 57/586 (9%), Positives = 138/586 (23%), Gaps = 138/586 (23%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G ++ + A + + AL+L +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKED---------------------------------- 38
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ + L+ + G V +++ AL + P S A + G +
Sbjct: 39 ----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A + I P + + + + + +
Sbjct: 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Query: 384 HI-------------YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA--- 427
+ + + E ++ + D +L + S A
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 428 ---ALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482
A F+ + + L + G+ F K + AH+ K A+
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI------- 264
Query: 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542
L + +Y+ ++ + E +
Sbjct: 265 ELFPRVNSYI------------------------------YMALIMADRNDSTEYYNY-- 292
Query: 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
+ L + Y + N + + ++A +++ + L L
Sbjct: 293 -----FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662
+ + + + F A + L ++ +KA +
Sbjct: 348 AYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAE-----ILTDKND--------FDKALK 393
Query: 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--------- 713
Y I G ++ + + + EA +
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEA------TNLLEKASKLDP 446
Query: 714 --PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
I LA + Q + A+ +++ + + A
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 8/271 (2%)
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L + + A Y L +D V Y L+A + +L+ +E+
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+AL++ Y L + A S D D+ L A
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 643 LRNEKRAPKLEATHLEKAKEL--YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700
+ K T EL + + + + +++ + +
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-----YYNTDAQILLY 755
EA + + A +F A ++++ L K A L +
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242
Query: 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786
+ + + +AI L P +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 7e-28
Identities = 69/683 (10%), Positives = 158/683 (23%), Gaps = 83/683 (12%)
Query: 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162
R E A + ++D + +G + + ++ L V
Sbjct: 133 ARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192
Query: 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
A+ + L +A + P+ AI + L + + +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI-ASHDGGKQALETMQRLLPVLCQ 251
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A L P+ V A+ G ++ +E +QR +
Sbjct: 252 AHGLPPDQVVAI----------ASNIGGKQALETVQRLLPVL------------------ 283
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
A +T P + + + + ++ + + +
Sbjct: 284 ---------CQAHGLT---PDQVVAIASHGGGKQALETVQRLLPVL---CQAHGLTPDQV 328
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ L + L + + PD + + G L +++ +L +A
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 388
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFE 460
+ P A G AL+ + +L +A P + + +
Sbjct: 389 HGLTPDQVVAIASNGGKQ-------ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 441
Query: 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520
+ G L ++ QL L
Sbjct: 442 LETVQRLLPVLCQTHG------LTPAQVVAIASHDGGKQALETVQQLLPVLCQA---HGL 492
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
++V + + + + + D V A +A +Q +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
++ +A + A++ G + + + A A S
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTQVQVVAIASNIG---- 607
Query: 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700
K +++ + + + + A + Q
Sbjct: 608 ---------GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658
Query: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760
+ A + + +
Sbjct: 659 AHGLTP-----DQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQEQVVAIASNNGGK 711
Query: 761 YEAEQWQDCKKSLLRAIHLAPSN 783
E Q L +A L P
Sbjct: 712 QALETVQRLLPVLCQAHGLTPDQ 734
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-22
Identities = 39/368 (10%), Positives = 96/368 (26%), Gaps = 22/368 (5%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ + + A V+Q D V A+ +
Sbjct: 448 LLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
L +A + P AI G + L + + +A L P+ V
Sbjct: 508 QALATVQRLLPVLCQAHGLTPDQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 233 ALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
A+ + L+ + + + +A + +A+ + +
Sbjct: 567 AIASNGGGKQALETVQRL-----LPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
A +T P + + + + ++ + + + + G
Sbjct: 622 LCQAHGLT---PAQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT--PDQVVAIASNGG 675
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ L + L + + + + + L +++ +L +A + P
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 468
A G AL+ + +L +A P + + + +
Sbjct: 736 VAIASNGGGK------QALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 469 QSFKDALG 476
G
Sbjct: 790 PVLCQDHG 797
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-14
Identities = 41/454 (9%), Positives = 96/454 (21%), Gaps = 73/454 (16%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L + L + + P + + L +++ +L +A
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A AL+ + +L +A P + + + G
Sbjct: 255 LPPDQVVAIASNIGGK------QALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A L
Sbjct: 309 TVQRLLPVLCQAH-------------------------------------------GLTP 325
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
++V + + + + + D V A +A +Q + ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A + A++ G +A ET + + A
Sbjct: 386 CQAHGLTPDQVVAIASNGG--------KQALETVQRLLPVLCQAHGLTP------DQVVA 431
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + K +++ + + + + A + Q
Sbjct: 432 IASHDGG-KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH 490
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
+ + A + + +
Sbjct: 491 G-----LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQA 543
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
E Q L +A L P G Q
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 577
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 2e-13
Identities = 43/363 (11%), Positives = 89/363 (24%), Gaps = 33/363 (9%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + G A V++ ++ V A+
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 228 PENVEAL-----------------------VALAVMDLQA-NEAAGIRKGMEKMQRAFEI 263
P V A+ L + + A G ++ +E +QR +
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKG 319
+ + L V P + + + +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
++ ++ + + G Q L + L + + PD +
Sbjct: 886 TVQRLLPVL---CQDHGLTLDQVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAI 941
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439
+ L +++ +L + + P A G A L A L
Sbjct: 942 ASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAAL 1001
Query: 440 KKA 442
Sbjct: 1002 TND 1004
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 24/322 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W+ + Q + V + + E + P + G ++ F + A+
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A + +G+ + + A A QR L+L P N++AL+ALAV + + A
Sbjct: 94 QDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---------N 299
E ++ + P + T + + V N
Sbjct: 153 -----CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L +H G++ +A + A++ +P E + LG
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRP-EDYSLWNRLGATLANGDRSE 264
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A+ + + LEI P + LG + LG +A A + +
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 420 LISSDTGAALDAFKTARTLLKK 441
+ +G A + A +L+ +
Sbjct: 325 I----SGNIWAALRIALSLMDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 9e-21
Identities = 59/403 (14%), Positives = 120/403 (29%), Gaps = 66/403 (16%)
Query: 252 KGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV----TNHGPTKSH 306
+ ++ E + +A + + Q + + T +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ +GD L+ A++ + P + LG Q + + ++A+ +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG-DAEAWQFLGITQAENENEQAAIVALQ 123
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS---- 422
+ LE+ P+N + L AL Y + A E L+ K +P+ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 423 SDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478
S + + + L +A G+ + ++ +GV+ GEF A +F AL
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL--- 240
Query: 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQ 537
L WN++ L N R E
Sbjct: 241 ---------------------------------TVRPEDYSL-WNRLGATLANGDRSEEA 266
Query: 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597
+ Y L ++ + L + ++ AL + K N
Sbjct: 267 VEA-------YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
+ + + W R A D + + +LG+ +
Sbjct: 320 VPHP-AISGNIW----AALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 7e-18
Identities = 56/395 (14%), Positives = 113/395 (28%), Gaps = 60/395 (15%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
A ++ + W + E+ + + + E + + +
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ G K+ + + A D + W G + A A +
Sbjct: 69 F-EEGLKRLKEGDLPV----TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYK-- 209
LE +N+ AL+ A N D+ E K ++ +P ++ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 210 ------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
L ++ + A + + ++ DLQ + + RA +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDP-------DLQTGLGV-LFHLSGEFNRAIDA 235
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ AL V P + L + + E+
Sbjct: 236 F---------------------------NAALTVR---PEDYSLWNRLGATLANGDRSEE 265
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A Y ++ EI +P FI Y LG + LG +R A++NF L + + +
Sbjct: 266 AVEAYTRAL-EI-QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 384 -----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+I+ L + + D
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 45/371 (12%), Positives = 101/371 (27%), Gaps = 47/371 (12%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
++ + + ++ + Y P + + G +LK GD +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYY---FHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
E + P + E + LG + + A L++ ++ P + +A + L
Sbjct: 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT--- 144
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482
+ A LK ++ P ++ N + G
Sbjct: 145 ---NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG------ 195
Query: 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542
V + G+ ++ + L L +
Sbjct: 196 ---------VKELYLEAAHQN-----------GDMID-----PDLQTGLGVLFHLSGEFN 230
Query: 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
A + L + + RL A + + ++E AL++ + + LG
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290
Query: 603 ELKNDDWVKAKETFRAA-----SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657
+ + +A F A + + +S W + P+L
Sbjct: 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350
Query: 658 EKAKELYTRVI 668
++ R
Sbjct: 351 LGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 520
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 641 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 696
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 697 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 750
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 805
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 51/420 (12%), Positives = 95/420 (22%), Gaps = 94/420 (22%)
Query: 355 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 407 PRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 463
+D + G + D + + A + P E +G+ E
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFM-------EAAILQDPGDAEAWQFLGITQAENEN 114
Query: 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523
++A + + L E N+++
Sbjct: 115 EQAAIVALQRCL------------------------------------ELQPNNLK---- 134
Query: 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583
L LA A + + + Y + S +
Sbjct: 135 ---ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 584 EALKVNGKYPNALSM------------LGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631
V Y A LG L + ++ +A + F AA +D
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPEDYSLW 250
Query: 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 691
LG L N R E+A E YTR + + + G+ G +
Sbjct: 251 NRLGA-----TLANGDR--------SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 692 DVSKDLFTQV-------QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744
+ F + ++W L L L
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-26
Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 66/375 (17%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQLLL 139
L+A + LG T ++ S+ +G+ L
Sbjct: 9 LSASAENVSSLGLGSGGG---------GTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 140 AKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRALQVHP 193
G+ + F+ ++A +++ L LG A F G Y+ +++++K L +
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY--FYLGDYNKAMQYHKHDLTLAK 117
Query: 194 SCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------NV-- 231
S A G +G +G+ +A +R L L + NV
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177
Query: 232 ---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHFFFTG 282
+ L + + + +E Q ++ A L N ++ G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 283 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS---VKEIN 336
+ + L + + + NL S+ G +E A +Y + E+
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 390
+ Y LG L +F +A+ + L I +LG+ + +G
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357
Query: 391 QIEKAQELLRKAAKI 405
E+A + + ++
Sbjct: 358 GHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-26
Identities = 62/387 (16%), Positives = 119/387 (30%), Gaps = 74/387 (19%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ +G G + S + L + N G + F++ A+
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGS-GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 190 QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Q AI +G + LG KA Q + L
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------------- 114
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGP 302
+ ++ A + L N G+ E L + +
Sbjct: 115 ----------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-L 163
Query: 303 TKSHSYYNLARSYHSKGDY-----------------EKAGLYYMAS---VKEINKPHEFI 342
++ + YNL YH+KG + +A +Y + ++++
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
LG LGDF++A+ + ++ L I LG+ ++ LGQ E A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 397 ELLRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI- 448
E ++ + +AQ+ LG + A++ + ++ G+ +
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDAL 475
++G H G E A + + L
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 15/190 (7%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGD 357
G S S S G + + + G+ GD
Sbjct: 4 GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 358 FRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKI-----DPR 408
R+ + F+ ++ ++ LG+ Y LG KA + + + D
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 409 D-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFE 465
A++ +LG L A + TL ++ G+ + L N+G ++ KG+
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183
Query: 466 SAHQSFKDAL 475
K
Sbjct: 184 GQRNPGKFGD 193
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 58/462 (12%), Positives = 121/462 (26%), Gaps = 129/462 (27%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 400
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 401 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460
A + D + + + +G +F
Sbjct: 73 AAIQAGTEDLRT---------------------LSAIY-------------SQLGNAYFY 98
Query: 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520
G++ A Q K LTL ++ + +
Sbjct: 99 LGDYNKAMQYHKHD------LTL---------------------------AKSMNDRLGE 125
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
NL L+ + A++ L + D + +A NL
Sbjct: 126 ----AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGN--- 174
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGN- 636
GK+ + + + +A E ++ + + + GN
Sbjct: 175 ----VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR-ACGNL 229
Query: 637 ---W----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEK 688
+ ++ AA+ + + L A+E R + SNL G
Sbjct: 230 GNTYYLLGDFQAAIEHHQER-------LRIAREFGDRAAERRANSNL------GNSHIFL 276
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL- 741
GQF+ + + + + + ++ V++ + +L + Y F A++ + L
Sbjct: 277 GQFEDAAEHYKR-----TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 742 --RKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
++ A+ L H + K + + LA
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 16/247 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++E Y +A ++H Y+ G+ A A++ E
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 233 A--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+++ + + + +++ E Y ++ + A+ +
Sbjct: 74 DYKVISKSFARIGNAYHK-----LGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKK 127
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E V P K+ + Y +K D+ A Y +K P E Y
Sbjct: 128 AEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-P-EDARGYSNRAA 181
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 411 QAFIDLG 417
Sbjct: 242 NGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 24/268 (8%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+G + ++A + E +D L +A E+ +G Y ++ A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQANEAAG 249
++ I ++G ++ ++ +++ A + L+ E
Sbjct: 67 QGREMRADYKV-ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE- 124
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKS 305
++K + + P A +F A+ P +
Sbjct: 125 ----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDW-------PNAVKAYTEMIKRAPEDA 173
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
Y N A + + +A ++ E + F+ Y Q+ + ++ SAL
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDP--NFVRAYIRKATAQIAVKEYASALETL 230
Query: 366 EKVLEIYPDNCE--TLKALGHIYVQLGQ 391
+ + + + + +Y + Q
Sbjct: 231 DAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 8e-19
Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 56/302 (18%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + + ++ +++A +Y + E++K + + + G++ +
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITY---LNNRAAAEYEKGEYET 56
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A++ +E + K + + ++G L+K + + ++L
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADIL 115
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478
L + + P E G +F K ++ +A +++ + +
Sbjct: 116 ------TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--- 166
Query: 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538
+ N+ L L E I
Sbjct: 167 ---------------------------------KRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 539 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598
D + K ++V AY+R A A ++E ++ A + + N S
Sbjct: 194 AD-------CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246
Query: 599 LG 600
Sbjct: 247 RE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 42/274 (15%), Positives = 77/274 (28%), Gaps = 53/274 (19%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G YK Q +A + + +A +L ++ L A + + A
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAA----------AEYEKGEYETAIST 60
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A+ G Y +++S+ G+
Sbjct: 61 L---------------------------NDAVEQ---GREMRADYKVISKSFARIGNAYH 90
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+++ K + + KL + L E + P+ E + G
Sbjct: 91 KLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 443
Y A + + K P DA+ + + L A L +F A KA
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL------AKLMSFPEAIADCNKAI 200
Query: 444 EEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
E+ P + E+ SA ++ A
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 50 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK----IET 101
+++G+ + +E+G E+ Y +G Y LG IE
Sbjct: 48 EYEKGEYETAISTLNDAVEQG--REMRADY----KVISKSFARIGNAYHKLGDLKKTIEY 101
Query: 102 KQREKEEH-----------FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
Q+ EH + + ++ + +G+ K + A A
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ +++ ++ +A + +++ +A++ P+ A IR +
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT--AQIA 219
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ + A + A D E A + L
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 26/275 (9%), Positives = 54/275 (19%), Gaps = 83/275 (30%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G K F A+ ++ K E++ D L + G+ E A L A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ I G
Sbjct: 67 QGREMRADY--------------------------------------KVISKSFARIGNA 88
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
K + K+ T
Sbjct: 89 YHKLGDLKKTI-------EYYQKSLTE------------------------------HRT 111
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
+L L +++ + + + +++ +++ E
Sbjct: 112 ADILTKLRNAEKELKK-------AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+K + S K + +A A
Sbjct: 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 620 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 740 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 794 MQKFSAS 800
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 569 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 622
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 623 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 743 KFYYNTDAQILLYLARTHYEAEQ 765
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 28/273 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR---QAF 220
A F Y++++E + + + P +C Y+L + A+ + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETY 63
Query: 221 QRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278
+ M + A +++ Q A + + ++F
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLA-----IQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ G L Q E + T T +Y L ++Y+ +Y KA ++ + E+
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKP- 173
Query: 339 HEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYV 387
Y + A +EK++E+ K + + Y
Sbjct: 174 -NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
KA + +DP + +A L L
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 5e-22
Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 44/304 (14%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
K E A + +NK + P + + + + A +
Sbjct: 6 EFRYADFLFKNNNYAE----AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 153 IVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
+ + +G+ S +++ Y+ A+ + IG Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG-QIGSYFYN 120
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
G A Q ++ ++ + + L + A + E+ P
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA-----DSSFVKVLELKPNI 175
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ + A + LA K YEK +
Sbjct: 176 YIGYLWRARANAAQDPD----------------------TKQGLA-----KPYYEKL-IE 207
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
A K E I + D A ++ +L + P N + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 388 QLGQ 391
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 6e-20
Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 22/215 (10%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAG 325
A+ F + A+ V N + Y A Y+ Y+ A
Sbjct: 5 VEFRYADFLFKNNNY-------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
++N + G++ +K G A+ ++ ++ + +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE 445
+ G A + + K + D + F +LG+ + A + K E
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY------NKEYVKADSSFVKVLEL 171
Query: 446 VP--IEVLNNIGVIHFEKG---EFESAHQSFKDAL 475
P + + + A ++ +
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 65/291 (22%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ---ELLRK 401
+ K ++ A+ F K+ ++ Y +L + + AQ E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 402 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHF 459
+ F G++L A + A + +++ IG +
Sbjct: 66 KVNATKAKSADFEYYGKIL------MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519
KG F A Q + + +
Sbjct: 120 NKGNFPLAIQYMEKQI------------------------------------RPTTTDPK 143
Query: 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL---Q 576
V + L + + V A + +L + YL A A++
Sbjct: 144 -------VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 577 LSIELVNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
L+ + ++V + A + N D VKA ++
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 37/282 (13%), Positives = 70/282 (24%), Gaps = 52/282 (18%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D+ A FK +E F ++ + R L Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA------KKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 93 -------------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVG 133
+ Y GKI K+ + A Q Y A D +
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQ 113
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G KG A + + + + Y + + + L++ P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 194 SCPGAIRLGIGLCRYKLGQLGK---ARQAFQRALQLDPEN--------VEALVALAVMDL 242
+ L K A+ +++ +++ +EA +A
Sbjct: 174 NIYIGY-LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ K + + P A++ L H
Sbjct: 233 INRD---KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 620 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 678
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 783
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 31/324 (9%), Positives = 62/324 (19%), Gaps = 63/324 (19%)
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 433
N + + +A E+ K + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 434 TARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491
T G I +KG+ A Q ++ A+
Sbjct: 62 T----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---------------- 101
Query: 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551
+ D ++ + + + A
Sbjct: 102 --------------------DRDTTRLD-------MYGQIGSYFYNKGNFPLAIQYMEKQ 134
Query: 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611
+ + L + + L++ D K
Sbjct: 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Query: 612 ---AKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
AK + A G L N + KA +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------KVKADAAWKN 246
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQ 690
++ +N A +G + L
Sbjct: 247 ILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 9e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 583
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 754
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 27/314 (8%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + Q ++ + + + +++ ++ Q P A R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+GL + + + G A A A LDP+++ ALAV + AA + ++
Sbjct: 61 -LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRA 114
Query: 260 AFEIYPYCAMALNYLAN--------HFFFTGQHFLVEQLTETALAVTNH----GPTKSHS 307
P + + F + + P +
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +L Y+ +Y+ A +V+ +P + + LG + AL + +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVE--LRP-DDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427
L+I P + + Y + Q + A + L +A + + T +
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA----TRS 287
Query: 428 ALDAFKTARTLLKK 441
D F+ ++ +
Sbjct: 288 MWDFFRMLLNVMNR 301
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 8e-20
Identities = 33/357 (9%), Positives = 79/357 (22%), Gaps = 76/357 (21%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+ L + A + + W G +
Sbjct: 25 MEEGLSMLKLANLA-----------EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------- 198
A A D ++ A N + +L + L P
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 199 ------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
+ + R AL+++P + + +L V +
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV----------LYN 183
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A A+ + P + + L
Sbjct: 184 LSNNYDSAAANL---------------------------RRAVELR---PDDAQLWNKLG 213
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ + ++A Y ++ +IN P ++ Y + + + A + + +
Sbjct: 214 ATLANGNRPQEALDAYNRAL-DIN-P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 373 PDNCETLKALG-----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF---IDLGELLI 421
++ + ++ + F L +L+
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSMLL 327
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 7e-19
Identities = 59/303 (19%), Positives = 99/303 (32%), Gaps = 39/303 (12%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235
G + Y + GL KL L +A AF+ Q PE EA
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP-MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295
+L + NE + + A + P LA AL
Sbjct: 60 SLGLT-QAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAAL 109
Query: 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355
A YE+ G + + +I+ +
Sbjct: 110 A-----------SLRAWLLSQP--QYEQLGSVNLQADVDIDDLN-----VQSEDFFFAAP 151
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 416 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 472
LG L + ALDA+ A + P + V+ N+ V + +++ A +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLV 264
Query: 473 DAL 475
A+
Sbjct: 265 RAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 22/173 (12%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ--------YYNKAS 121
+D V AL V +T
Sbjct: 83 MLDPKDIAV-------HAALAVSHTNEHNAN----AALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
+ + A E + + LE + ++ + Y +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 182 LEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+RA+++ P +LG L + +A A+ RAL ++P V
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATL--ANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 40/301 (13%), Positives = 85/301 (28%), Gaps = 27/301 (8%)
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
N + E P + + LA L E A++ + + + +A+ L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAE-------AALAFEAVCQAAPEREEAWRSLGLTQAE 67
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 630
L+I +N A ++ K + L + A + RA + +
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690
+ + + + + L + + ++ GV+
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KF 744
+D + + E +W L A+ Y L +
Sbjct: 188 YDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Query: 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 804
YN +A ++ Q+ K L+RAI++ T +A + +
Sbjct: 243 MYN--------MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294
Query: 805 T 805
Sbjct: 295 L 295
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 23/156 (14%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 129
E++ A + +LGV Y + A +A + +
Sbjct: 166 EMNPNDAQL-------HASLGVLYNLSNNYD-----------SAAANLRRAVELRPDDAQ 207
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKR 187
W G L ++A A+ L+ + V + + + N +Y + + R
Sbjct: 208 LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS--NMSQYDLAAKQLVR 265
Query: 188 ALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQR 222
A+ + R R
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 15/255 (5%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ V + + + A + +GL + G +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDA-YIQLGLGYLQRGNTEQAKVP 59
Query: 220 FQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
++AL++DP + +A ALAV + A E+ ++A A LN
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLA-----DEEYRKALASDSRNARVLNNYGGF 114
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ ++ Q A T + P +S + NL +A Y+ S+ +N+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKSL-RLNR 172
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+ + K ++ A ++ + N +L + + A
Sbjct: 173 --NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 398 LLRKAAKIDPRDAQA 412
+ ++ P +
Sbjct: 231 YGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 47/300 (15%), Positives = 85/300 (28%), Gaps = 53/300 (17%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + H +++ ++ +K E Y LG L+ G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQN------PLKTDKGRDEARDAYIQLGLGYLQRGNTEQ 55
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A K LEI P + + AL ++ + + A E RKA D R+A+ + G L
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115
Query: 421 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
A A + V N+G++ + + A + F+ +L
Sbjct: 116 YEQKRYEEAYQRLLEA---SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL---- 168
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
+ N V +A LL +
Sbjct: 169 --------------------------------RLNRNQPS-------VALEMADLLYKER 189
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
+ V A Y L + L +AK + + + ++
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 19/237 (8%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q K + ++ G L +G EQA + LE D + A A V
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF 81
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYKLGQLGKARQAFQRALQ--LDPE 229
+ E Y++AL + G L + + +A Q A Q L PE
Sbjct: 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY--EQKRYEEAYQRLLEASQDTLYPE 139
Query: 230 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
L ++ LQ + A + E +++ + +A+ + ++ Q
Sbjct: 140 RSRVFENLGLVSLQMKKPA---QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ G + S R D + A Y + + ++P
Sbjct: 197 YYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--------LYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ L K D ++ + Y ++G EQ R+ LE ID AD
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE------IDPSSADA--- 73
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
AL V + + + LA + Y KA D G L +
Sbjct: 74 ----HAALAVVFQTEMEPK-----------LADEEYRKALASDSRNARVLNNYGGFLYEQ 118
Query: 142 GEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
E+A + + V + + + E+++++L+++ + P
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + YK + ARQ + Q +N +L+ + + +
Sbjct: 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA---SYGLQ 234
Query: 260 AFEIYPYCAMALNYLAN 276
+YP + A
Sbjct: 235 LKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 93/322 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
IDP A A + V+ + E
Sbjct: 66 IDPSSADAH--------------------------------------AALAVVFQTEMEP 87
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ A + ++ AL +D +
Sbjct: 88 KLADEEYRKAL------------------------------------ASDSRNAR----- 106
Query: 525 VTVLFNLARLLEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
VL N L + A Y + + L ++ + E
Sbjct: 107 --VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
++L++N P+ + DL K ++V A++ + + G + +L LG
Sbjct: 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLG-IRLAKV 221
Query: 643 LRNEKRAPKLEATHLEKAKELY 664
+ A A++ + K LY
Sbjct: 222 FEDRDTA----ASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 676 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 589 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 647
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 648 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 47/281 (16%)
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +S +G+ G Y + E + +A++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
+ + +L +A + +AL+LD A + E +
Sbjct: 61 -INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----------VYVVKEMYKE 109
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
A +++ E AL G +Y L
Sbjct: 110 AKDMF---------------------------EKALRA---GMENGDLFYMLGTVLVKLE 139
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A Y +V E+N + G G AL+ F V E P + +
Sbjct: 140 QPKLALPYLQRAV-ELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
G Y EKA E+L KA I P A L
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 51/266 (19%), Positives = 84/266 (31%), Gaps = 49/266 (18%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMAL 271
+G + + L P + G K E +A E A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP- 59
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
Y N A S + E+A +Y +
Sbjct: 60 ------------------------------------YINFANLLSSVNELERALAFYDKA 83
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ E++ YYG G V + ++ A FEK L +N + LG + V+L Q
Sbjct: 84 L-ELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IE 449
+ A L++A +++ D +A G L A A + E+ P +
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCL------ANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 450 VLNNIGVIHFEKGEFESAHQSFKDAL 475
N GV + K E A + A+
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y + + E E A +Y+KA +D + + G G + + K ++A F+
Sbjct: 60 YINFANLLSSVNELER----ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L A +N V + +L + +RA++++ + A R G+C G
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-RFQFGMCLANEGM 174
Query: 213 LGKARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
L +A F + DP + +A + + E A +E + +A +I P +A
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-----LEMLDKAIDIQPDHMLA 229
Query: 271 LNYLANHFFFTGQH 284
L+ H
Sbjct: 230 LHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
+ G E A + + KA + + ++ LL + E+E+
Sbjct: 27 GQQMGRGSEFGDYEK-----------AAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A + + LE D A G V + Y ++ + +++AL+ +G
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIY 264
KL Q A QRA++L+ + EA + + + + A + + E
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA-----LSQFAAVTEQD 189
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
P A A + + ++ + A+ + P + + H +
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 55/266 (20%)
Query: 360 SALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
S+ + + P T + G EKA E KA + + DA +I+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 473
LL ++++ + A KA E G ++ K ++ A F+
Sbjct: 63 FANLL------SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533
AL + +L + TVL L +
Sbjct: 117 AL------------------------------------RAGMENGDLFYMLGTVLVKLEQ 140
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + + ++ +A + L ++ + + +
Sbjct: 141 PKLALPY-------LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193
Query: 594 NALSMLGDLELKNDDWVKAKETFRAA 619
+A G ++ KA E A
Sbjct: 194 DAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 39/335 (11%), Positives = 74/335 (22%), Gaps = 98/335 (29%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ + + + G EKA E KA + + DA +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY-- 60
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
N + E E A + AL
Sbjct: 61 ------------------------------------INFANLLSSVNELERALAFYDKAL 84
Query: 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535
E D + + V
Sbjct: 85 ------------------------------------ELDSSAATAYYGAGNVYVVKEMYK 108
Query: 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595
E + L + D + L + +L++ + A+++N A
Sbjct: 109 EAKDM-------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655
G +A F A + D + A + G ++
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVT-EQDPGHADAFYNAGV-----TYAYKEN------- 208
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690
EKA E+ + I ++ A + ++
Sbjct: 209 -REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 749
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 56/323 (17%), Positives = 100/323 (30%), Gaps = 54/323 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRA 188
G+ L G+ S F+ ++ +++ L LG A F Y+ +LE++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY--FYLHDYAKALEYHHHD 69
Query: 189 LQVHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE-------------- 229
L + + A G +G LG +A QR L + E
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 230 ---------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYL 274
+ + + ++ ++ + + A L
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 275 ANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 332 ---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKAL 382
+++ Y LG L D+ A+ K L I +L
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 383 GHIYVQLGQIEKAQELLRKAAKI 405
G+ Y LG ++A K +I
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 62/357 (17%), Positives = 104/357 (29%), Gaps = 78/357 (21%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQA 219
L + G + F++ A+QV + AI +G + L KA +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-LSAIYSQLGNAYFYLHDYAKALEY 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
L L G + G A A L N
Sbjct: 66 HHHDLTL------------------ARTIGDQLGE-------------AKASGNLGNTLK 94
Query: 280 FTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGD--------------- 320
G + L + + ++ + YNL YH+KG
Sbjct: 95 VLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 321 -----YEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ A Y + V + + LG LG+FR A+ E+ L I
Sbjct: 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213
Query: 373 ------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELL 420
LG+ Y+ LG+ E A E +K + +AQ+ LG
Sbjct: 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273
Query: 421 IS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
D A+D + ++ + + ++G + G + A + L
Sbjct: 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 452
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
N+G ++ KG+ L
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-22
Identities = 59/382 (15%), Positives = 128/382 (33%), Gaps = 53/382 (13%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G+ L G+ S F+ ++ +++ F Y+ +LE++ L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 191 VHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAV 239
+ + A G +G LG +A QR L + AL L
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
+ ++ G + + E+ A+++ E+ A+ +
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY-------------EENLSLVTALGD 182
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLG 356
+ ++ NL +++ G++ A + + + KE Y LG + LG
Sbjct: 183 R-AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241
Query: 357 DFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID---- 406
+F +A ++K L + ++ +LG+ Y L EKA + K I
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301
Query: 407 --PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI--------EVLNNIG 455
+ +A LG + + A+ + + ++ G++ ++ +G
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361
Query: 456 VIHFEKGEFESAHQSFKDALGD 477
+ + S + +L
Sbjct: 362 LSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 8e-17
Identities = 48/246 (19%), Positives = 82/246 (33%), Gaps = 38/246 (15%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 327 YY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 378 TLKALGHIYVQLGQI--------------------EKAQELLRKAAKID------PRDAQ 411
L LG++Y G+ + A + + + +
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 412 AFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQ 469
AF +LG + A+ A + + K+ G++ +N+G + GEFE+A +
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 470 SFKDAL 475
+K L
Sbjct: 249 YYKKTL 254
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 58/403 (14%), Positives = 112/403 (27%), Gaps = 88/403 (21%)
Query: 46 IAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101
K G V F ++ + AI + LG Y YL
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQ---------VGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
A +Y++ + + ++ +A +
Sbjct: 66 -----------ALEYHHHD--LTLAR-----------TIGDQLGEAKA------------ 89
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
G + +++ +R L + ++G Y LG + A+
Sbjct: 90 ---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKG--- 141
Query: 222 RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLA 275
++ V + ++ ++ + + A L
Sbjct: 142 -------KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLG 194
Query: 276 NHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS- 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Query: 332 --VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALG 383
+++ Y LG L D+ A+ K L I +LG
Sbjct: 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314
Query: 384 HIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELL 420
+ Y LG ++A K +I + A ++L +L
Sbjct: 315 NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 452
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
N+G ++ KG+ L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGA 427
+C L G + G A ++ D + + LG D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 428 ALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
AL+ TL + G+++ + N+G G F+ A + L
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-21
Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 46/346 (13%)
Query: 145 EQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
+ S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 258
+G + + Q A A +R L+L P+N AL+ALAV + A E ++
Sbjct: 103 Y-LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILR 156
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
P A + GP+ + S S
Sbjct: 157 DWLRYTPAYAHLVTPAEE-----------------GAGGAGLGPS-----KRILGSLLSD 194
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
+ + ++A+V ++ GLG + G++ A+ F L + P++
Sbjct: 195 SLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA---ALDAFKTA 435
LG Q E+A R+A ++ P ++ +LG I + GA A++ F A
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAVEHFLEA 311
Query: 436 RTLLKKAGE------EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ +K+ + + + + + G+ ++ + L
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 49/327 (14%), Positives = 101/327 (30%), Gaps = 36/327 (11%)
Query: 112 LATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
L + Y+K + + + + +G L +G++ A F+ ++ D ++ A
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ +R L++ P A + + + +A + + L+
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTA-LMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 228 PENVEALVALAVMDLQANEAAGIRKG------------MEKMQRAFEIYP--YCAMALNY 273
P + A R E A + P
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L F +G++ AL+V P + L + + E+A Y ++
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRAL- 278
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY------- 386
E+ P +I Y LG + LG R A+ +F + L + + G +
Sbjct: 279 ELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336
Query: 387 ----VQLGQIEKAQELLRKAAKIDPRD 409
LGQ + +
Sbjct: 337 RLALSMLGQSDAYGAADARDLSTLLTM 363
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 56/374 (14%), Positives = 104/374 (27%), Gaps = 77/374 (20%)
Query: 308 YYNLARSYHSKGDYEKAGL--YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
A ++ DY+ Y E P + G +L+ GD +A+ F
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425
E ++ P + E + LG + Q A LR+ ++ P + A
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA------------- 134
Query: 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
L + V + A + +D L
Sbjct: 135 -------------------------LMALAVSFTNESLQRQACEILRDWL-------RYT 162
Query: 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP-WNKVTVLFNLARLLEQIHDTVAA 544
Y + + L G+ + + +V LF A + ++
Sbjct: 163 PA---YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDP 217
Query: 545 SVLYRL-ILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEA 585
V L +LF + + +L A N + ++ A
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Query: 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----SDATDGKDSYATLSLGNWNYFA 641
L++ Y + LG + +A E F A + + +S W+
Sbjct: 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337
Query: 642 -ALRNEKRAPKLEA 654
AL ++ A
Sbjct: 338 LALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 630
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 688
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 742
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 743 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-21
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 62/265 (23%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ K + G+ QA S F+ + + D +Y +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YYWTNV 46
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ + + L K KA ++ LQ P NV+ L A A M + +
Sbjct: 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--- 103
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + ++ ++ A
Sbjct: 104 EKDALRMYEKILQLEADNLAA-------------------------------------NI 126
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L Y+ + EK L + + Y G +L + A + +KV+
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPT--KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 370 EIYPDNCETLKALGHIYVQLGQIEK 394
+P E K L I ++ +
Sbjct: 185 LRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 7e-21
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 26/186 (13%)
Query: 308 YYNLARSYHSKGDYEKA----------------GLYYMASVKEINKPHEFIFPYYGLGQV 351
+ G +A Y+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---ATELALA 63
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
K ++ A ++++L+ P+N + L+A + V GQ + A + K +++ +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 412 AFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469
A I LG + L+ + K G+ +E A
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----QYARYRDGLSKLFTTRYEKARN 178
Query: 470 SFKDAL 475
S + +
Sbjct: 179 SLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 6e-18
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 19/213 (8%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV--YYT 94
D L + G+ V FRQ + ++ ++ Y N+ T
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
L K R ++ A +Y + + + ++ + +G+ + A ++ +
Sbjct: 59 ELALAYKKNRNYDK----AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 155 LEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213
L+ + DN+ A + + + LE + L A R GL + +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLSKLFTTRY 173
Query: 214 GKARQAFQRALQLDPENVEALVALAVMDLQANE 246
KAR + Q+ + P + EA L + E
Sbjct: 174 EKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 28/212 (13%)
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + GQ G+A F++ + L+ + E
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY---------------------YWTN 45
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ + LA + + + L P A +G
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRG 102
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD-FRSALTNFEKVLEIYPDNCET 378
+ A Y + ++ + + LG + + L K L
Sbjct: 103 QEKDALRMYEKIL-QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
G + + EKA+ L+K P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-15
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175
Y+ + ++A +K +L+ +NV L A ++ R
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL-GKARQAFQRALQLDPENVEAL 234
G+ D+L Y++ LQ+ A + +G Y + K + + L + A
Sbjct: 102 GQEKDALRMYEKILQLEADNLAA-NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273
+ L K +Q+ +P
Sbjct: 161 YRDGLSKLFTTR---YEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-11
Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 66/244 (27%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ + ++ GQ +A R+ ++ + + S
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS-------------- 50
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
E+ ++ + + + + ++ A+ +K+ L
Sbjct: 51 --------EISSKLATELALAYKKNRNYDKAYLFYKELL--------------------- 81
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
+ N+V+ L A + A +Y IL
Sbjct: 82 ---------------QKAPNNVD-------CLEACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 557 DYVDAYLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
D + A + L + +E + L K A G +L + KA+ +
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179
Query: 616 FRAA 619
+
Sbjct: 180 LQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 736
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 9e-07
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 626
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 687 EKGQFD 692
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 722
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 723 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 781
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 782 SNYTLRFDAGVAMQK 796
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 16/253 (6%)
Query: 174 NRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ L ++ L + G+ LG AR F +AL + P+
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLL-YERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 230 NVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
E L + +AA E E+ P A ++ G+ L
Sbjct: 76 MPEVFNYLGIYLTQAGNFDAA-----YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
+ P L + + + + K + + +
Sbjct: 131 QDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG + + + + ET LG Y+ LG ++ A L + A +
Sbjct: 188 LGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 408 RDAQAFIDLGELL 420
+ L
Sbjct: 247 HNFVEHRYALLEL 259
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 9e-19
Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 8/275 (2%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L ++E Q + D +G L + G A + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L D G + + E + L++ P+ A L G+ Y G+
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGR 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
A+ Q DP + + L + + + +E + +++ + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
YL N ++ ++ S + + L + Y S GD + A + +V
Sbjct: 187 YLGN-ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
N H F+ + LG + L ++
Sbjct: 243 A--NNVHNFV-EHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 12/263 (4%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L + + + D + L + + + G + + + +AL + P
Sbjct: 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRK 252
P +G+ + G A +AF L+LDP A + +A+ ++ A
Sbjct: 76 MPEV-FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA---- 130
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
+ + ++ P +L + E L + + + L
Sbjct: 131 -QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ E+ + + + LG+ L LGD SA F+ +
Sbjct: 190 N-ISEQTLMERLKADATDNT-SLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 373 PDNCETLKALGHIYVQLGQIEKA 395
N + LGQ +
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 7e-17
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 9/176 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ Y Y S G A + ++ I + + LG + G+F +A
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR--PDMPEVFNYLGIYLTQAGNFDAA 96
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
F+ VLE+ P G G+ + AQ+ L + DP D + L
Sbjct: 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
D A + K +K+ +E V +G I E+ E D
Sbjct: 157 KLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNT 208
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 69/326 (21%)
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431
+ + L Q + + +++L A D AQ + G L +L
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLY------DSLGL 58
Query: 432 FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
AR +A P EV N +G+ + G F++A+++F L
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-------------- 104
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549
E D + N+ L+ R D
Sbjct: 105 ----------------------ELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LL 135
Query: 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIEL---VNEALKVNGKYPNALSMLGDLELKN 606
+ L L + + Q L ++ K + LG++ +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQ 194
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
+ K + S LG + L+ A L+
Sbjct: 195 TLMERLKADATDN-TSLAEHLSETNFYLGK-----YYLSLGD--------LDSATALFKL 240
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFD 692
+ + N A + L+ GQ
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 707 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 767 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 3e-20
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 45/245 (18%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
I+ + + + +A + + AL+ DP+N A + A L+ N+ A E
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA-----QES 64
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
++A I P A N FL +L
Sbjct: 65 FRQALSIKPDSAEINNNYGW--------FLCGRL-------------------------- 90
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
++ Y+ ++ + P G K G F A ++ L P
Sbjct: 91 --NRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
K L + GQ+ A +K + LG I+ G A A++
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG-WKIAKALGNAQAAYEYEA 206
Query: 437 TLLKK 441
L
Sbjct: 207 QLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 405 IDPRDAQAFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
I P A+ + G L ++ F A L P N G+ ++G
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAKQG 127
Query: 463 EFESAHQSFKDAL 475
+F A K +L
Sbjct: 128 QFGLAEAYLKRSL 140
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 5e-14
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 14/173 (8%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA Y DY +A ++K P + + ++ L A +F +
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKS--DP-KNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 368 VLEIYPDNCETLKALGHI-YVQLGQIEKAQELLRKAAK--IDPRDAQAFIDLGELLISSD 424
L I PD+ E G +L + ++ KA P A ++ G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS---- 123
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A F A LK++ P + G+ A FK
Sbjct: 124 --AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 76 ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135
A+ + I L + Y AT A + D W+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYR-----------QATASIEDALKSDPKNELAWLVRA 49
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKRALQVH- 192
++ ++A +F+ L D+ G R ++S+ ++ +AL
Sbjct: 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPT 108
Query: 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251
P+ A L G+C K GQ G A +R+L P+ A LA + A + +
Sbjct: 109 YPTPYIA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LG 164
Query: 252 KGMEKMQRAFEIYPYCAMALNYLA 275
++ L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 26/219 (11%)
Query: 35 AEQAP--LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
AE+A ++ +A EY + Q +E+ + + D
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIED--ALKSDPKNELA-------WLVRAEI 51
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-GEVEQASSAF 151
Y YL + A + + +A I G L + ++ + F
Sbjct: 52 YQYLKVND-----------KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100
Query: 152 KIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
L A L + +G++ + + KR+L P P A + +
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF-KELARTKML 159
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
GQLG A F++ + L +A A
Sbjct: 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 614 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 674 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 731
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 732 LAMKMYQNCLRKFYYNTDAQILL 754
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 32/269 (11%), Positives = 61/269 (22%), Gaps = 85/269 (31%)
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E L Y++ +A + A K DP++ A+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW---------------- 45
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
I+ + A +SF+ AL
Sbjct: 46 ----------------------LVRAEIYQYLKVNDKAQESFRQAL-------------- 69
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLY 548
+ E + N L +++ + +
Sbjct: 70 ----------------------SIKPDSAE-------INNNYGWFLCGRLNRPAESMAYF 100
Query: 549 R--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
L Y A L + + L+ + +L ++P A L ++
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLG 635
A F+ + L LG
Sbjct: 161 GQLGDADYYFKKY-QSRVEVLQADDLLLG 188
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 1e-18
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
P A +LN LAN G +L AL V P + ++ NLA +G ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEA 62
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
++Y +++ P F Y +G ++ D + AL + + ++I P + L
Sbjct: 63 LMHYKEAIRI--SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAG 443
I+ G I +A R A K+ P A+ +L L D + K +++
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
E+ N + +H F+ A
Sbjct: 180 EK------NRLPSVHPHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 1e-14
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L I+ +Q EE A + Y KA + + +L +G++++A +K
Sbjct: 12 LNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ A +L+ Y RA+Q++P+ A + G
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-NLASIHKDSGN 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
+ +A +++ AL+L P+ +A LA E+M++ I
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHC---LQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 273 YLANHFFFT 281
+ H +
Sbjct: 184 LPSVHPHHS 192
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 1e-13
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 45/243 (18%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ +L A ++ +G +++ Y++AL+V P A + + G+L +A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-HSNLASVLQQQGKLQEALMH 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
++ A+++ P +A + K M+ +Q A + Y A+ +N
Sbjct: 66 YKEAIRISPTFADAYSNMGN----------TLKEMQDVQGALQCY-TRAIQIN------- 107
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
P + ++ NLA + G+ +A Y ++K KP
Sbjct: 108 ----------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP- 142
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399
+F Y L + D+ +K++ I D E L ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGF 201
Query: 400 RKA 402
RKA
Sbjct: 202 RKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P + ++L LA + + I + + ++A E++P A A + LA+ G+
Sbjct: 4 SCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ A+ ++ PT + +Y N+ + D + A Y ++ +IN F +
Sbjct: 61 EALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QIN--PAFADAH 114
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + G+ A+ ++ L++ PD + L H + E ++K I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ S F+ A
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAI 205
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 1e-12
Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 11/268 (4%)
Query: 80 YER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y + + + ++ L + +Q + +E A +Y +A RI + G L
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+V+ A + ++ + A A + + G +++ Y+ AL++ P P A
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ C + + ++ + + + +E +V + +
Sbjct: 148 -YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS----HGFR 202
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A H ++ +H +L +S
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGM 262
Query: 319 GDYEK-AGLYYMASVKEINKPHEFIFPY 345
+ +K Y S + +
Sbjct: 263 HNPDKFEVFCYALSPDDGTNFRVKVMAE 290
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 6e-08
Identities = 31/186 (16%), Positives = 70/186 (37%), Gaps = 19/186 (10%)
Query: 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616
+ D+ LA I + + N++ ++ L +AL+V ++ A S L + + +A +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676
+ A + A ++GN L+ + ++ A + YTR I + +
Sbjct: 67 KEAI-RISPTFADAYSNMGN-----TLKEMQD--------VQGALQCYTRAIQINPAFAD 112
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
A + + + G + + + PD + NLAH ++ +
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDF-----PDAYCNLAHCLQIVCDWTDYDER 167
Query: 737 YQNCLR 742
+ +
Sbjct: 168 MKKLVS 173
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
+ E+G + + L+ + E NLA V QG A+ Y+ +
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
R T A + T E + Q + RAI + P+ + +
Sbjct: 71 R--ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 627
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 628 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
D NLA++ QGN A+++Y+ L F A LA + + Q+
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHY 66
Query: 774 LRAIHLAPSNYTLRFDAGVAMQK 796
AI ++P+ + G +++
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKE 89
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 2e-18
Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ Y + S+ G Y +A + + + + LG +K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVY-DAD-A-FDVDVALHLGIAYVKTGAVDRG 61
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
E+ L PDN + LG YVQ+ + + A LL K A+ +P + LG L
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL- 120
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L F A K A P +V I + + G E A FK A
Sbjct: 121 -----DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 1e-16
Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 43/210 (20%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ K G+ +A ++ D +V+ + L + + R E
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI----------AYVKTGAVDRGTE 63
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ ++A P L +Y Y+
Sbjct: 64 LL-ERSLADA-----------------------------PDNVKVATVLGLTYVQVQKYD 93
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A + E N P + LG LG F A+ +F+ L + P+ + +A+
Sbjct: 94 LAVPLLIKVA-EAN-P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
Y Q+G+ E+A +KA ++D +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 2e-12
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 14/187 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
VYY G K + A + D + + G + G V++ +
Sbjct: 9 VYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ L DNV +Y ++ + + +P RLG+ L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DN 122
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
LG+ +A +F+ AL L P + A+A + +E A + ++A E+
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-----LPHFKKANELDEGA 177
Query: 268 AMALNYL 274
++ L +
Sbjct: 178 SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 57.8 bits (141), Expect = 9e-10
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ KG G QA + V +AD +V L G E +R+L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEA 247
P LG+ ++ + A + + +P N L V +L +
Sbjct: 71 DAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
A ++ + A + P +A + G+H
Sbjct: 129 A-----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 3e-18
Identities = 47/324 (14%), Positives = 94/324 (29%), Gaps = 44/324 (13%)
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPS 194
+ + E+E+ + VL + + AL+ + YS +A+++ P
Sbjct: 76 KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV------MDLQANEAA 248
A +G +K G + A F AL N +L L++ D +
Sbjct: 136 LVEA-WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSR 193
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ + + + A ++ + L N + +
Sbjct: 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP------------------- 234
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++A Y + K K + + + AL F +
Sbjct: 235 ----------KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
+ P E + + L + LL K P+ Q+ + L + G
Sbjct: 285 AALDPAWPEPQQREQQLLEFLS---RLTSLLESKGKTKPKKLQSML---GSLRPAHLGPC 338
Query: 429 LDAFKTARTLLKKAGEEVPIEVLN 452
D + + K E P+ L
Sbjct: 339 GDGRYQSASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 3e-15
Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 19/190 (10%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ + ++ + DY ++ ++ + LG+V K GD SA
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSA 156
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKAAKIDPRDAQA 412
T F L + +L+ L + QL + + + A ++D D ++
Sbjct: 157 HTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 413 FIDLGELLIS--SDTGAALDAFKTARTLLKKAGEEVPI-----EVLNNIGVIHFEKGEFE 465
+ LG +S +TG + A + +A + ++ N +H + +
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 466 SAHQSFKDAL 475
A + F A
Sbjct: 276 EALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 7e-12
Identities = 49/325 (15%), Positives = 100/325 (30%), Gaps = 41/325 (12%)
Query: 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAIL 86
+ +L+ Q +D YF+ VE + ++ E+++ + E +
Sbjct: 42 EAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD-VQEEMEK--TLQQMEEVLGSA 98
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
GK + A +KA +++ W G++ KG+V
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPE---AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 147 ASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
A + F L ++ V L + + DS+ K A+Q+ +
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 199 -IRLGIGLCR------YKLGQLGKARQAFQRALQLD---PENVEALVALAVM--DLQANE 246
LG +A A+ +A ++D N + + A + ++
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
A +E +A + P L+E L+ + + G TK
Sbjct: 276 EA-----LEGFSQAAALDPAWPEPQQREQQ---------LLEFLSRLTSLLESKGKTKPK 321
Query: 307 SYYNLARSYHSKGDYEKAGLYYMAS 331
++ S Y ++
Sbjct: 322 KLQSMLGSLRPAHLGPCGDGRYQSA 346
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 8e-12
Identities = 58/377 (15%), Positives = 118/377 (31%), Gaps = 37/377 (9%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
SH +++ + +G + MAS+ + + + L + +
Sbjct: 4 SHHHHHHSSGLVPRGSH-------MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDR 56
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
+ Y + A ++EK + + + +AQA + G+ L
Sbjct: 57 LYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL---- 112
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGD----- 477
D A LL KA + P +E N +G ++++KG+ SAH F AL
Sbjct: 113 -NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Query: 478 -----GIWLTLL-DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VT 526
+ L L + S+ Q K + D W ++
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLS 225
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
+ FN + + ++A + K D +L A + K + ++E ++A
Sbjct: 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
++ +P L E+ + +L + R +
Sbjct: 286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQ 344
Query: 647 KRAPKLEATHLEKAKEL 663
+ + L+ L
Sbjct: 345 SASGQKMTLELKPLSTL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 548 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 665
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 717
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 638 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 694
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 749
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 750 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 784
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 9e-18
Identities = 44/332 (13%), Positives = 113/332 (34%), Gaps = 27/332 (8%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
++E ++ EE L Y R + ++ G+ + V + + +
Sbjct: 37 EVEQDIQQMEEDQDLLIYYSLMCFRHQLM--LDYLEPGKTYGNRPTVTELLETIETPQKK 94
Query: 158 DRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----IGLCRYKL 210
+ L + EF++ Y +++ +Y+ A + P I + Y +
Sbjct: 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154
Query: 211 GQLGKARQAFQRALQLDPENV--EALVALAVMDLQAN--------EAAGIRKGMEKMQRA 260
Q + +AL + + ++ + N +A + ++
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSK 318
+ + A++L +AN + +G + + + A V+ + L+ +
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 319 GDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYP 373
G +KA + + + +K ++ +F + + + + L+ FEK ++
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ ++ E+A RK K
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 34/253 (13%), Positives = 86/253 (33%), Gaps = 22/253 (8%)
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
E + ME+ Q Y + ++ + +TE +
Sbjct: 36 AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95
Query: 305 SH-----SYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLG 356
+ S + + +Y +A YY + + ++ E ++ + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 357 DFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405
++ + + L+IY ++L + Y +KA L A ++
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 406 --DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
D A + +++ D A++ F+ A + ++ ++ +VL + + G
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 463 EFESAHQSFKDAL 475
+ + A Q ++ L
Sbjct: 276 QTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 46/366 (12%), Positives = 91/366 (24%), Gaps = 79/366 (21%)
Query: 43 WLIIAREYFKQGKVEQFRQILEE--GSSPEIDEYYADVRYERIAILNALGVYYTYLG--- 97
+L + Y + V + + +E + +YY+ L G+Y
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS---------LFFRGMYEFDQKEYV 118
Query: 98 -------KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ E + + A ++ A + Q ++ + QA
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQALDI 170
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GAIRLGIGL 205
++ + +L A + Y +L + AL++ L I
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ G A + FQ+A ++ E +
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREK--------------------------------VPD 258
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-----HGPTKSHSYYNLARSYHSKGD 320
L L+ GQ Q E L + + +
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y+ ++ N V F A + KVL+ E +
Sbjct: 319 IHDLLSYF----EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ----EDIL 370
Query: 381 ALGHIY 386
+Y
Sbjct: 371 KGECLY 376
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 593 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 647
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 648 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 708 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 758
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 759 THYEAEQWQDCKKSLLRAIHLA 780
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 36/236 (15%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ GRY +L ++RAL+ +P P A + + KLG + A + + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEA-LYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 233 ALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291
+ L+ +A +G +++A +
Sbjct: 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVL--------------------------- 107
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351
+ A V P + + Y G+ +KA ++ + E L ++
Sbjct: 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPE---IRSALAEL 160
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L +G AL + K LE P + + + G+ E+A
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 4e-16
Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
L ++ G Y+ A + ++KE P + Y L + QLKLG AL N +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--NP-QDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 368 VLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDL 416
++ P L YV L G +E+A +L+ A +++PR A +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 417 GELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473
G + + G A + K A L E+ + + ++ G + A +
Sbjct: 125 GLVY--ALLGERDKAEASLKQALALEDTP------EIRSALAELYLSMGRLDEALAQYAK 176
Query: 474 AL 475
AL
Sbjct: 177 AL 178
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----------G 356
Y LAR+ G A V P ++ Y L + + L G
Sbjct: 42 LYWLARTQLKLGLVNPALENGKTLV-ART-PR-YLGGYMVLSEAYVALYRQAEDRERGKG 98
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
AL+ + + P G +Y LG+ +KA+ L++A ++ + L
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSAL 157
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 474
EL ++ A KA E+ P +++ KG+ E A ++
Sbjct: 158 AELY------LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211
Query: 475 L 475
Sbjct: 212 H 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
L Y L + + + + A A R++ + +G + GE ++
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ K L + D A + + GR ++L Y +AL+ P R+
Sbjct: 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL-RVRYASA 194
Query: 207 RYKLGQLGKARQAFQRALQLDP 228
G+ +A +A
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 31/211 (14%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LGV LG+ + A + +A + + +P + L G V
Sbjct: 9 LRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 147 ASSAFKIVLEADRDNVPAL--LGQA---------CVEFNRGRYSDSLEFYKRALQVHPSC 195
A K ++ + L +A E +G +L K A +V+P
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKG 253
L GL LG+ KA + ++AL L+ E ALA + + + A
Sbjct: 118 APL-HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA----- 170
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ + +A E P A+ G+
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKA 201
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 736 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 1e-17
Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 22/240 (9%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYN 310
E + A ++ +++ Q + A + +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 311 LARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
A ++ YE A ++ + + +P Y +G + + A+ F++
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 368 VLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDL 416
+ ++ P + + I+ +LG+I+KA E K D F L
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
L +S +A + L+ + + ++ + E+ F+ A F
Sbjct: 310 KSLYLSGP---DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 7e-15
Identities = 45/345 (13%), Positives = 106/345 (30%), Gaps = 44/345 (12%)
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
+I+ + + EE L Y R ++ L + E + S +
Sbjct: 34 LRREIKQELDQMEEDQDLHLYYSLMEFRHNL----MLEYLEPLEKMRIEEQPRLSDLLLE 89
Query: 155 LEADRDNVPALL------GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----I 203
++ + + LL + E ++ Y +++F+K+A I +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
Y + Q + ++A ++ E + A +++ + A
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF-----ATNFLDLKQYEDAI 204
Query: 262 EIY-------------PYCAMALNYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKS 305
+ L + Q+ + A+A +N P+
Sbjct: 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264
Query: 306 HSYYNLARSYHSKGDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRS 360
+Y+ + + ++ G +KA Y+ MA ++ + + F + L +
Sbjct: 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
E +Y D + + Y + +KA K ++
Sbjct: 325 FFDFLES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 21/231 (9%)
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN---LARSYHSKGDYE 322
+ L YL + + T YY + +Y
Sbjct: 61 RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYL 120
Query: 323 KAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372
A ++ + + + E ++ + + + ++ + EIY
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLIS-SDT 425
+ ++ L Q E A +KA + + ++G S S
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 426 GAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
A+ FK A + +++ + + I IH++ G+ + AH+ +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 55/365 (15%), Positives = 113/365 (30%), Gaps = 58/365 (15%)
Query: 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA 88
+ + + + L L+ R +E ++ E P + + ++ ++ A L
Sbjct: 42 LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIE-EQPRLSDLLLEI-DKKQARLTG 99
Query: 89 LGVYYTYL--GKIETKQREKEEHFILATQYYNKASRIDMHEP-------------STWVG 133
L YY G E QRE A +++ KA + ++
Sbjct: 100 LLEYYFNFFRGMYELDQREYLS----AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY 155
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-- 191
Q + QA +K + + A + +Y D++ +++A +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215
Query: 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
P G IGLC+ Q A F+RA+ + E+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES------------------ 257
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPTKSHS 307
I P A + + G+ + +A + G S
Sbjct: 258 -------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +S + G E+A + ++ + + + + +F+ A F K
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 368 VLEIY 372
V ++
Sbjct: 365 VEQVR 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 30/268 (11%), Positives = 81/268 (30%), Gaps = 27/268 (10%)
Query: 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEA 585
+ + L+Q+ + + Y L+ F++ ++ ++L L I+
Sbjct: 37 EIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQAR 96
Query: 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAA 642
L +Y G EL +++ A + F+ A + A + +
Sbjct: 97 LTGLLEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSE 151
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + +A E+Y + L + + Q++ + F +
Sbjct: 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211
Query: 703 EAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQI 752
+ N+ +Q + A+ ++ + F + Q
Sbjct: 212 S-----MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266
Query: 753 LLYLARTHYEAEQWQDCKKSLLRAIHLA 780
+ + HY+ + + + + +
Sbjct: 267 YFLITQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A R + W+ L G+ A + L + A+ V
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ + R++++ ++A P PG +G GQ A A+ RA QL PE
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALW-LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
L + + + +++ A +L+
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 8e-15
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
+ + + + + A L A E G + +R L +HP P A+
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA- 61
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+G R+ + +A Q+A PE+ + L D EAA R
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-----AAAYTR 116
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A ++ P L N ++ L+ A G + L+
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 6/140 (4%)
Query: 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340
T A+ P ++ LA + GD + + P
Sbjct: 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HP-G 55
Query: 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400
LG+V+ A ++ + P++ LGH GQ E A
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 401 KAAKIDPRDAQAFIDLGELL 420
+A ++ P + L
Sbjct: 116 RAHQLLPEEPYITAQLLNWR 135
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
D + L A+V+ +P + L +L +GD + ++ L ++P + E
Sbjct: 3 ADGPRELLQLRAAVRH--RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTART 437
+ LG + + +A LL++A+ P + LG L + AA A+ A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 438 L 438
L
Sbjct: 120 L 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 43/202 (21%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+ + A++ P++ A + LA +L + G +QR ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT---AGEMAVQRGLALHPGHPEA 59
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ L + +H L + A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDA--------------------------------- 86
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
P E LG G +A + + ++ P+ L + +L
Sbjct: 87 ------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 391 QIEKAQELLRKAAKIDPRDAQA 412
L + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
LA + DT A + + L + + +A RL + + + L+ +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
++P LG A + A
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 18/211 (8%), Positives = 39/211 (18%), Gaps = 81/211 (38%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--- 59
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ +G + + + A + A
Sbjct: 60 -----------------------------------VARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535
+ H + L L
Sbjct: 85 ------------------------------------DAAPEHPG-------IALWLGHAL 101
Query: 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566
E AA+ Y + +L
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%)
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 833
+A AP + + G A L+ + A A ++ +
Sbjct: 81 QQASDAAPEHPGIALWLGHA--------LEDAGQAEA----AAAAYTRAHQLLPEEPYIT 128
Query: 834 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 893
L+ ++ + AA A + AA Q A A +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188
Query: 894 EEQKKYLLEKRKLEDEQKRLR 914
+ L R + LR
Sbjct: 189 AASVRPLAPTRV--RSKGPLR 207
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 728 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 23/233 (9%), Positives = 46/233 (19%), Gaps = 81/233 (34%)
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 449
+ LR A + P+D A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA------------------------------------- 25
Query: 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509
+ G+ + + + L
Sbjct: 26 -WLMLADAELGMGDTTAGEMAVQRGL---------------------------------- 50
Query: 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 569
H E + L R+ A+VL + ++ L L
Sbjct: 51 --ALHPGHPE-------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622
+ + + A ++ + P + L + + DW A
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 6e-17
Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 18/181 (9%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
T S + + L Y +++A + A ++ + +G V+ G++
Sbjct: 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 359 RSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----D 406
+A F + E+ + + + G + A++ K+ D
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 407 PRD-AQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGE 463
A AF LG+L + A + AR + + + + E++ + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Query: 464 F 464
Sbjct: 203 H 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 49/230 (21%)
Query: 180 DSLEFYKRALQV-----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
++ ++ Q HP+ R +G + + +AR +FQ Q
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------- 55
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
+ +G AL+ + G +
Sbjct: 56 ----------AQKSGDHTAE-------------HRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 295 LAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYG 347
+ S + Y +A GD A Y S+ ++ + + G
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQ 391
LG + + + A ++ + +I+ E + L +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRD 409
A + LG++Y + + ++A+ + + D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 410 -AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFE 465
+A +G + + AA F R LL E+ + + G+
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 466 SAHQSFKDAL 475
A Q ++ +L
Sbjct: 125 GARQEYEKSL 134
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 41/224 (18%)
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-----HPSCPGAIR 200
A + +L A V R+ ++ ++ Q +
Sbjct: 10 LAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+G+ G AR+ F +L +
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEEREL------------------LASLPEDPLAA----- 106
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHS 317
+ +A G Q E +L + + ++ L
Sbjct: 107 -------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159
Query: 318 KGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + +A +++ + E+ L ++
Sbjct: 160 EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG Y ++ + + A + + E G +
Sbjct: 27 GARFMLGYVYAFMDRFDE-----------ARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 138 LLAKGEVEQASSAFKIVLEADR---DNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G + A F E ++ A V + G + + + Y+++L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 191 VH-----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
G+G + L +A+Q + RA +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-15
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ G G+ + A F+ + D + LG + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y +L+ Y + + P C +LG L A F A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 237 LA 238
A
Sbjct: 126 AA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y L + + G ++ A + A ++ + + GLG + LG + A
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARY-FLGLGACRQSLGLYEQA 71
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
L ++ + + ++QLG ++ A+ A +
Sbjct: 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 5e-12
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y LG Q + G + A F+ + + + LG LG E+A + A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 405 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL 438
+D + + E + D A F +AR L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-11
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422
+ + D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
AL ++ + + H + G+ + A F A
Sbjct: 66 GLYEQALQSYSYGALMDINE-----PRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
++ D + L ++ G++ D+ + ++ + LG+G CR
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQS 64
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV 239
LG +A Q++ +D A
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAE 94
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
+ + L L + + G+ +++ + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQ 63
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G YE+A Y ++ + + L+LGD A + F +
Sbjct: 64 SLGLYEQALQSYSYGA-LMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 377 ETLKALGHIYVQLGQIEKAQE 397
L + ++
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 129
+ E + Y ALG GK + A + + +D ++
Sbjct: 12 GLSEDTLEQLY-------ALGFNQYQAGKWDD-----------AQKIFQALCMLDHYDAR 53
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
++G G + G EQA ++ D + A G + + A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 190 QVHPSCP 196
+ + P
Sbjct: 114 ALAAAQP 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQK 796
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-15
Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 41/179 (22%)
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
++ NL +++ G++ A + + KE Y LG + LG+F +A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 363 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
++K L + ++ +LG+ Y L EKA + K
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-------------- 115
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L I+ + D R ++G + G + A + L
Sbjct: 116 --LAIAQELK---DRIGEGRA-------------CWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 324
A L N + G E L + + +Y NL +Y G++E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 325 GLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDN 375
YY + +++ Y LG L D+ A+ K L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ Y LG ++A K +I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 9e-11
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G Y LG A A ++ L + + + A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLL--------------IAKEFGDKAAE------------ 48
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKG 319
+A + L N + F G+ + + L + ++ S Y+L +Y
Sbjct: 49 -----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 320 DYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
DYEKA Y++ +E+ + LG LG+ A+ EK LEI
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 7e-07
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 43/172 (25%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGIGLCRYKLGQLGKARQAF 220
LG + G + D++ +++ L + + +G LG+ A + +
Sbjct: 15 LGNTH--YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
++ L L R A + L N +
Sbjct: 73 KKTLLL------------------ARQLKDRAVE-------------AQSCYSLGNTYTL 101
Query: 281 TGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+ LA+ + + + ++L +Y + G++++A +
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG + LG A + + I E + G
Sbjct: 10 RAFGNLGNTHYLLGNFRD-----------AVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 138 LLAKGEVEQASS----AFKIVLEA-DRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQV 191
+ GE E AS + + DR Y +++++ + L +
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 192 ------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL 226
+G LG +A ++ L++
Sbjct: 119 AQELKDRIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 56/278 (20%), Positives = 90/278 (32%), Gaps = 55/278 (19%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++ K+AL+ HP A L + L + +A AL
Sbjct: 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 225 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 265
+ P L LAV + A E + +RA EI P
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKFHP 124
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 319
A LN LA G+ VE AL + + P + + NLA Y +G
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-PNVAKTKNNLASCYLKQG 183
Query: 320 DYEKAGLYYMASVKEINK-----PHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEI-- 371
Y+ A Y + ++ + P + + + R + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 372 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
P TL++LG +Y + G++E A L A++
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 39/201 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFP-YYGLGQVQLKLGDFRS 360
S ++ A ++ E + H + L V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61
Query: 361 ALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------ 406
A L I P TL L +Y + G+ ++A+ L ++A +I
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 407 --PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA--------GEEVP--IEVLNNI 454
P A+ +L L + + ++A G + P + NN+
Sbjct: 122 FHPDVAKQLNNLALLCQN------QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175
Query: 455 GVIHFEKGEFESAHQSFKDAL 475
+ ++G+++ A +K+ L
Sbjct: 176 ASCYLKQGKYQDAETLYKEIL 196
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 7e-15
Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 15/270 (5%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
F G Y + +R P + + + G + + ++
Sbjct: 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQ 66
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
A+ A + I +++ + + L A+ +F+ +
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQNP-------D 118
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
AL + G + + + A + +++ ++ +
Sbjct: 119 AALRTLHQGDSLEC-MAMTVQILLKLDRLDLA-RKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F+++ + L ++ G+ E A+ +L++A D +
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 413 FIDLGELLISSDTGAALDAFKTARTLLKKA 442
I+L L G + + LK A
Sbjct: 237 LINLVVLSQ--HLGKPPEVTNRYLSQLKDA 264
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 18/233 (7%)
Query: 135 GQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192
+ L + + + + D N LL A + F +L + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
KL +L AR+ ++ D + +A A + L A ++
Sbjct: 132 C------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQD 184
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
Q + + LN A G+ E + + AL + NL
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHPETLINLV 241
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
G + Y++ +K+ ++ H FI + + K DF + +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 3e-09
Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 14/244 (5%)
Query: 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD 77
A + + +I + L + A + + L+ S +D
Sbjct: 43 AYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 78 VRYERIAILNALGVYYTYLGKIETKQR-----------EKEEHFILATQYYNKASRIDMH 126
+I L + K + LA + K D
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 127 EPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184
T + + LA G +++ A F+ + + + L GQA +GR+ +
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244
+ AL P + + L ++ + + + + +
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PFIKEYRAKENDF 281
Query: 245 NEAA 248
+
Sbjct: 282 DRLV 285
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 6e-09
Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 8/169 (4%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ A S + + + + + + +AL
Sbjct: 67 AVRMFAEYLASHSRRDAI-VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + I ++L +++ A++ L+K D + + +++
Sbjct: 126 QGDSLECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
DA+ + + K + +LN H +G +E+A ++AL
Sbjct: 181 KLQDAYYIFQEMADKCSPTL--LLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+G ++ + ++V P+ E L Y+ + + ++ + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL 65
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470
QA E L + + ++ + L I+F ++A ++
Sbjct: 66 QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530
+ I L +L + D + +
Sbjct: 124 LHQGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDATLTQLAT--AWVS 174
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
LA E++ D A +++ + K + AA A+ + + ++ EAL +
Sbjct: 175 LAAGGEKLQD---AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAA 619
+P L L L + + +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 27/240 (11%)
Query: 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDA 622
R + +A + +++E + A+ M + + R S +
Sbjct: 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 623 TDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHL-----------EKAKELYTR 666
D ++ L + N AALR + LE + + A++ +
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQ--FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ Q V G + +F ++ + S + + A +
Sbjct: 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAACH 210
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL-RAIHLAPSN 783
AQG + A + Q L K + + L+ L + + L + S+
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPET--LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
I + + I KG +E+A F+ + D N
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
V ++G A + + ++ + + Y A + + + G C+ +L KA++ F+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECFE 128
Query: 222 RALQLDPENVEALVALAVMDL 242
+Q + + A + +D
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
Y+ A +++KG E+A +++ + + GL + F+ A +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDY-IMGLAAIYQIKEQFQQAADLYAV 95
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ ++ + G ++L KA+E + +
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTA 435
+ D G+ + A + F+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + D ++ + + I D + + + + + G+IE+A+ R D
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 408 RDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 466
+ + L + A D + A L K + + G
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----YTPVFHTGQCQLRLKAPLK 122
Query: 467 AHQSFKDAL 475
A + F+ +
Sbjct: 123 AKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 8/126 (6%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
++ I + A F+ G+ E + LA Y
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQ 81
Query: 317 SKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
K +++A LY +A N P + GQ QL+L A FE V++ D
Sbjct: 82 IKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
Query: 376 CETLKA 381
+KA
Sbjct: 138 KLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 30/170 (17%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + + PH I + +G + L + A F
Sbjct: 8 SLWNEGVLAADKKDWKGA----LDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGELLISSDT 425
+ + G +Y Q + + A + L++A + + LG
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Query: 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
EVL NI ++ +K E++ A + A
Sbjct: 122 -----------------------EVLYNIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + +A + S+ +K Y+ G + + + A
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK--HLAVAYFQRGMLYYQTEKYDLA 90
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 151 KSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 77/241 (31%)
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ + +L+ + H I IG L + +A +AF R++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
A + + EK A + AL L +
Sbjct: 68 KHLAVAYFQRGM----------LYYQTEKYDLAIKDL---KEALIQLRGNQLI------- 107
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
DY+ GL + E+ Y
Sbjct: 108 --------------------------------DYKILGLQFKLFACEV---------LYN 126
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + K +++ A + + + +I+KA E + K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 408 R 408
Sbjct: 175 V 175
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 145
L GV + A ++ G + +
Sbjct: 9 LWNEGVLAADKKDWKG-----------ALDAFSAVQDPH---SRICFNIGCMYTILKNMT 54
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--IRLGI 203
+A AF + D+ A + + + +Y +++ K AL LG+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 204 -------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
K + KA + A + E + + A+ +
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-14
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ S + +A L + A ++ + E + LG Q + A+
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA---WRSLGLTQAENEKDGLAIIALN 75
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ P + AL + A LR P+ Q
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-11
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 435
A L A +DP+D L + AAL + +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 5e-11
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
+ + +++ ++ Q P A +GL + + + G A A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIAL 74
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
A LDP+++ ALAV + A + ++ P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNAN---AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ +G +L + +A+ AF+ V + + + A + + ++ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P + + A + + L P+
Sbjct: 80 LDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 8e-09
Identities = 11/81 (13%), Positives = 20/81 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + + + W G + A A D ++ A
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 173 FNRGRYSDSLEFYKRALQVHP 193
N + +L + L P
Sbjct: 96 TNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
GL KL L +A AF+ Q +PE EA +L + + + + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARM 79
Query: 263 IYPYCAMALNYLANHFFFTGQH 284
+ P LA
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNA 101
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-05
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 776
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 777 IHLAPSNYTLRFDAGVA 793
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 5e-14
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+DPR A+A+ +LG + A +KA E P E N+G ++++G
Sbjct: 64 LDPRSAEAWYNLGNAY------YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 463 EFESAHQSFKDAL 475
+++ A + ++ AL
Sbjct: 118 DYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 3e-11
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRS 360
P + ++YNL +Y+ +GDY++A YY K + P +Y LG K GD+
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDP-RSAEAWYNLGNAYYKQGDYDE 87
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ ++K LE+ P + E LG+ Y + G ++A E +KA ++DP
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 1e-09
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LG Y G + A +YY KA +D W G +G+ ++
Sbjct: 5 YNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ LE D + A + +G Y +++E+Y++AL++ P A +G
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNA 112
Query: 207 RYKLGQLGKARQAFQRALQLDPEN 230
YK G +A + +Q+AL+LDP +
Sbjct: 113 YYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 51.6 bits (125), Expect = 5e-08
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G YK G +A + +Q+AL+LDP + EA L A E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----------AYYKQGDYDEAIE 56
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
Y + AL + P + ++YNL +Y+ +GDY+
Sbjct: 57 YY---------------------------QKALELD---PRSAEAWYNLGNAYYKQGDYD 86
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+A YY ++ E+ P +Y LG K GD+ A+ ++K LE+ P +
Sbjct: 87 EAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 58/311 (18%), Positives = 93/311 (29%), Gaps = 80/311 (25%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++GRY ++ K+AL+ HP A L + L + A AL
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY----PYCAMALNYLANHFFF 280
IR+ + P A LN LA +
Sbjct: 97 A------------------------IRE---------KTLGKDHPAVAATLNNLAVLYGK 123
Query: 281 TGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
G++ E L + AL + +H P + NLA ++G YE+ YY ++ E
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-E 181
Query: 335 INK-------PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---------PDNCET 378
I + P+ L LK G F+ A T ++++L +N
Sbjct: 182 IYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLIS-SDTGAALDA 431
G+ + P +LG L AA
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 432 FKTARTLLKKA 442
+ A K+
Sbjct: 301 EEAAMRSRKQG 311
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 4e-13
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ I G E A F+ + D + LG
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
G+Y ++ Y + P C + G+L +A A +L
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP-FHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 230 NVEALVALA 238
E
Sbjct: 122 XPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 6e-12
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G G A + EI+ + + Y L Q + G + A F+ + + +
Sbjct: 1 GPLGSGGGTI-AMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTART 437
LG +GQ + A A +D + + E L+ + A A+
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Query: 438 L 438
L
Sbjct: 118 L 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-11
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + ++ E D + L A ++ G Y D+ ++ + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-L 59
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
G+G CR +GQ A ++ +D A LQ E + + + A
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116
Query: 262 EIYP 265
E+
Sbjct: 117 ELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 9e-11
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y+LA + + G YE A + A ++ H + GLG + +G + A
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLD--HYDSRFFLGLGACRQAMGQYDLA 74
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ ++ + +Q G++ +A+ L A ++ +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-09
Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 43/188 (22%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G LG ++ + +E L +LA Q + A ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----------SGXYEDAHXVF-QALCV 49
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
L+ S + L + G Y+ A Y
Sbjct: 50 LD-----------------------------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
++ + + L+ G+ A + E+ + E + + L
Sbjct: 81 GA-VMDIXEPR--FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Query: 391 QIEKAQEL 398
I+ +E+
Sbjct: 138 AIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 38/120 (31%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
G S + EI D E L +L Q G E A + + +D D++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--- 57
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+G G+++ A S+
Sbjct: 58 -----------------------------------FLGLGACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 776
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 777 IHLAPS 782
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + L+ +A ++ G E F+ + +D Y + A
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACR 65
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A+G Y LA Y+ + +D+ EP + LL GE+ +
Sbjct: 66 QAMGQYD------------------LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE 107
Query: 147 ASSAFKIVLEADRD 160
A S + E +
Sbjct: 108 AESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 8e-13
Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 52/281 (18%)
Query: 176 GRYSDSLEFYKRA--------LQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQ 225
+ S++ E +A ++ P A + QL +A+ A+ + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
N A +A + K +++M A + +
Sbjct: 65 AHANNRSLFHAAKAF----EQAGMMLKDLQRMPEAVQYIEKAS----------------- 103
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFI 342
+ V N P + + A D KA Y A + + +
Sbjct: 104 --------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
++ ++ F A + +K +Y P + A + + AQ
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 397 ELLRKAAKI----DPRDAQAFIDLGELLISSDTGAALDAFK 433
+ +R++ I D A DL + D L +
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQEL 398
Y A + + E + +N + G + L ++ +A +
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 399 LRKAAKI-----DPRD-AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVL 451
+ KA+ + P A A G+L+ D A+ ++ A + + E++
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492
+ + +F+ A S + + + K +
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 49/283 (17%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF-NRGRYSDSLEFYKRALQVH 192
+ +AK E +S K + D D+ + +A V F N + + + Y + + H
Sbjct: 9 EAHEHIAKAEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 193 PSCPGAIRLG-----IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-- 245
+ G+ L ++ +A Q ++A + EN A +D
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305
E + K + Q+A ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFEN-------------------------------EERLRQAA 155
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+R + +++A E+ VQL D+ +A
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 363 TNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRK 401
+ I ++C L+ L Y E+ + R
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 607
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 668 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 720
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 721 AHVYFAQGNFALAMKMYQNCL 741
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 9e-13
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A +LG
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 1e-10
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
E +KA ++DP +A+A+ N+G
Sbjct: 64 EYYQKALELDPNNAEAW--------------------------------------YNLGN 85
Query: 457 IHFEKGEFESAHQSFKDAL 475
++++G+++ A + ++ AL
Sbjct: 86 AYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-07
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 72 LDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 47/349 (13%), Positives = 97/349 (27%), Gaps = 60/349 (17%)
Query: 156 EADRDNVPALLGQ-----ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR----LGIGLC 206
E + + A V N G ++ K AL+ P R +G
Sbjct: 3 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
+ G+L ++ Q+ +M R +++ Y
Sbjct: 63 LHCKGELTRSLALMQQTE-------------------------------QMARQHDVWHY 91
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDY 321
+L + F G + E A + P A+ +
Sbjct: 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151
Query: 322 EKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---- 375
++A + ++ ++ P + + L Q L GD +A + ++ + +
Sbjct: 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211
Query: 376 ---CETLKALGHIYVQLGQIEKAQELLRKAAKID----PRDAQAFIDLGELLISS-DTGA 427
K + G A LR AK + + ++ I +
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 428 ALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A + + L + ++++ G A + DAL
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 51/308 (16%), Positives = 105/308 (34%), Gaps = 50/308 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRA 188
G++L KGE+ ++ + + + R + + +L+ Q+ + F +G + E ++A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 189 LQVH-----PSCPGAIRLGIGLCR--YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
Q+ P L + + +L +A + + +++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV--------------- 164
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
+ Q ++ + LA + L +L H
Sbjct: 165 ------------LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLLGNGKYHS 211
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRS 360
S++ + GD A + + K + F+ + + + Q+ LG+F
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQA 412
A E++ E D L L +Y Q G+ AQ +L A K+ R
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 331
Query: 413 FIDLGELL 420
F+ GE +
Sbjct: 332 FVIEGEAM 339
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 565 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 619
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 620 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 740 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 778
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 403 AKIDPR--DAQAFIDLGELL 420
++ + +L +
Sbjct: 68 IEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-09
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + Y LA+ + + +A + V+ P +++ YY LG++ +L A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDA 60
Query: 362 LTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQ 396
+ + + +E+ + + L L ++ +E
Sbjct: 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDA 431
P++ T AL +++ +A L + + DP + LG+L T A+D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469
+ + ++ G + L+ + + E H
Sbjct: 64 YAQGIEVAREEGT---QKDLSELQDAKLKAEGLEHHHH 98
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
++ A S +L ++ ++ P G +G +L + A
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDT 63
Query: 220 FQRALQLDPENVEA 233
+ + +++ E
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ + L + + P N E LG Y+ + R+A ++ +A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 412 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 469
+ L +L + R ++ KA I L + F + + A +
Sbjct: 80 LYAALATVLYYQASQHMTAQ---TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 470 SFKDAL 475
++ +
Sbjct: 137 LWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 4e-09
Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q R + W G+ L + + + A++ L+ +N A V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 173 F---NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ ++ + + +AL + + A + + + +A + +Q+ + L+
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITA-LMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Query: 230 NVEALVALAVMDL 242
+ + +++
Sbjct: 148 RINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197
++ E A + + A+ N + YS+SL Y++ALQ+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA- 78
Query: 198 AIRLGIGLCRYKLGQ---LGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + Y + R +AL LD + AL+ LA
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 7e-09
Identities = 19/126 (15%), Positives = 35/126 (27%)
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E + P S + L Y + DY + L Y +++ + E
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ Q +K L + + L L +A EL +K ++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 407 PRDAQA 412
Sbjct: 146 SPRINR 151
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215
+A R ++ L+ + ++ +P L +G
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWAL-LGEYYLWQNDYSN 62
Query: 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ A+++ALQL EN E ALA + + + +A + AL LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 276 NHFFFTGQH 284
+ F +
Sbjct: 123 SDAFMQANY 131
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQAS 148
+ LG+ Q + + Y +A ++ + +L + Q
Sbjct: 46 QWALLGEYYLWQNDYSN----SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L D + + AL+ A F + Y+ ++E +++ + ++
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G +A YY ++ + + Y GLG LG++R A ++ +P++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ LG+ E+ ELL K D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 355 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 412 AFIDLGELL 420
+ +L
Sbjct: 63 LRVFYAMVL 71
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G + ++ +Y++A+ LG+G LG+ KA ++ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 234 LVALAV 239
V A+
Sbjct: 64 RVFYAM 69
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 113 ATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
A YY KA + ++G G GE +A + ++ ++ + A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPG 197
V +N GRY +E + +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-10
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ ++E A +Y ++ E+N P ++ + KLG++ A
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELN-PANAVY-FCNRAAAYSKLGNYAGA 65
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
+ + E+ + I P + +G L + +A +KA ++DP + +L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + N A +Y G+Y A ++ I+ + Y +G L A
Sbjct: 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP--AYSKAYGRMGLALSSLNKHVEA 99
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ ++K LE+ PDN L ++L +
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
S D E +G + E A + +E + N +A G Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+ +++ +RA+ + P+ A R+G L L + +A +++AL+LDP+N L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMG--LALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 238 AVMDLQANEA 247
+ +L+ EA
Sbjct: 121 KIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K E+F A +Y KA ++ + + G A + + D A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ ++ +++ +YK+AL++ P + + + KL +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETY-KSNLKIAELKLRE 129
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 405 IDPR--DAQAFIDLGELLISSDTGAALDAFK 433
D Q +L L AL+
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-10
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
E +L DN LG Y + Q + A LR A DP + A+ LG+ L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 421 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
D A A+++ L A +V+ + V
Sbjct: 64 QGQGDRAGARQAWESG---LAAAQSRGDQQVVKELQV 97
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
++ + + +L DN+ ++ +L + AL P+ A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWL 59
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G G ARQA++ L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQAC 170
T+ G+ + + A + L+ D A LG+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 171 VEFNRGRYSDSLEFYKRALQVHPS 194
+G + + + ++ L S
Sbjct: 64 QG--QGDRAGARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
E + L R +G + Q A + AL DP A L
Sbjct: 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 3e-10
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ E+ E+ T ++ Y G Y +A + Y V +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 339 HEF------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---G 383
+ + + L LKL ++ A+ +K L + N K L G
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRG 358
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + E A+ K +++P++ A
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K ++ A Y K E + +AS +F + A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYG----------LSEKESKASESFLL---------AAF 320
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y+ ++E +AL + + + R G + + + A+ F++ L
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG--EAQLLMNEFESAKGDFEKVL 378
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGM-EKM 257
+++P+N A + +++ +A E + + M
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y ++ Y + + G A L + +C KL + KA +
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 219 AFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+AL LD N + L A + + E+A ++ E+ P A ++
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESA-----KGDFEKVLEVNPQNKAARLQISM 393
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 24/151 (15%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
K +A Y +++L + + + + LA NLA
Sbjct: 282 GKYMQAVIQY---GKIVSWLEMEYGLSEKES--KASESFLLAAFL----------NLAMC 326
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y +Y KA + ++ +E Y G+ QL + +F SA +FEKVLE+ P
Sbjct: 327 YLKLREYTKA-VECCDKALGLDSANEKG--LYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
N + +KA+E + +I
Sbjct: 384 NKAARLQISMC------QKKAKEHNERDRRI 408
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 3e-10
Identities = 106/756 (14%), Positives = 206/756 (27%), Gaps = 279/756 (36%)
Query: 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA 84
D D+ D+ K+ I+++ E+ I+
Sbjct: 34 DCKDVQDMPKS---------ILSK--------EEIDHIIMSKD-----------AVSGTL 65
Query: 85 ILNALGVYYTYLGKIETKQREKEEHFI---LATQYYNKASRI--DMHEPSTWVGKGQLLL 139
L + +KQ E + F+ L Y S I + +PS ++
Sbjct: 66 RL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MM 108
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +EQ + + NV R + L ++AL +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVS-----------RLQPYLKL---RQALL-------EL 147
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
R + + GK + + ++ M+
Sbjct: 148 RPAKNVLIDGVLGSGKT----------------WVALDVCLSY------KVQCKMD---- 181
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
F+I+ +L E + E + Y + ++ S+
Sbjct: 182 -FKIF--------WLN-----LKNCNSPETVLEMLQKL----------LYQIDPNWTSRS 217
Query: 320 DYEKAGLYYMASVKE------INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
D+ + S++ +KP+E L L L + ++A K +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYE-----NCL----LVLLNVQNA-----KAWNAFN 263
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL----LISSDTGAAL 429
+C+ L + R Q L + L
Sbjct: 264 LSCKIL-------------------------LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 430 DAFKTARTLLKKAG---EEVPIEVLNN----IGVIHFEKGEFESAHQSFKDALGDGI--- 479
+ LLK +++P EVL + +I E + DG+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII----AES----------IRDGLATW 344
Query: 480 --WLTLLDSKTKTYVIDASASMLQFKDMQ-LFHR---FENDGNHVELP-------WNKVT 526
W + K T +I++S ++L+ + + +F R F +P W V
Sbjct: 345 DNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVI 400
Query: 527 VLFNLARLLEQIHDTVAASVLYRLIL-----FKYQDYVDAYLRLAAIAKARNNLQLSIEL 581
+ V Y L+ YL L K N L +
Sbjct: 401 K--------SDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELK--VKLENEYALHRSI 449
Query: 582 VN-----EALKVNGKYPNALSM---------LGDLELK-----------NDDWVKAKETF 616
V+ + + P L L ++E + +++ K
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--I 507
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-------V 669
R S A + S N L+ K ++ Y R++
Sbjct: 508 RHDSTAWNASGSIL-------NTLQQLKFYKP-------YICDNDPKYERLVNAILDFLP 553
Query: 670 QHTSNLYAANGAGVV---LAEKGQFDVSKDLFTQVQ 702
+ NL + ++ L + + + ++ QVQ
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 8e-07
Identities = 70/488 (14%), Positives = 134/488 (27%), Gaps = 157/488 (32%)
Query: 548 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 591
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 592 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 648
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 649 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 705
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 706 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765
+F W+NL + + ++M Q L + N ++ + +
Sbjct: 181 DFKIF------WLNLKNCNSPE----TVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHS 229
Query: 766 WQDCKKSLLRAIHLAPSNYTLR----------FDAGVAMQKFSASTLQKTRRTADEVRST 815
Q + LL++ L F+ S L TR
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTR---F---KQ 276
Query: 816 VAELENAVRVFSHLSAASNLHLHGFDE--------KKINTHV-----EYCKHL-----LD 857
V + +A +H+S + H K ++ E +
Sbjct: 277 VTDFLSAATT-THIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 858 AAKIHREAA--EREEQQNRQRQEAARQAALA----EEARRK------------------- 892
A I A + + N + +++L E R+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 893 -----------------------AEEQKK---------YLLEKRKLEDEQ---KRLRQQE 917
E+Q K YL K KLE+E + +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--- 450
Query: 918 EHFQRVKA 925
+H+ K
Sbjct: 451 DHYNIPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 7e-05
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 82/301 (27%)
Query: 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAR--------EYFKQGKVEQFRQILEEG 66
+ LPR+ P L +I + +K ++ I+E
Sbjct: 311 LDCRPQDLPREVLTT--------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 67 SSPEI---DEYYADVRYERIAILNA--------LGVYYTYLGKIETKQREKEEHFILATQ 115
SS + EY ++R+++ L + + + K + + H +
Sbjct: 361 SSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---------------D 160
K S I + L K ++E + + +++ D
Sbjct: 419 KQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 161 N----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
+ F R + D F ++ ++ H S I L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLD-FRFLEQKIR-HDSTAWNASGSI---LNTL 524
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMD-LQANEAAGIR-KGMEKMQRAF-----EI 263
QL + DP+ E LV A++D L E I K + ++ A I
Sbjct: 525 QQLKFYKPYICDN---DPKY-ERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 264 Y 264
+
Sbjct: 580 F 580
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.1 bits (134), Expect = 9e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELL 420
E +KA ++DP +A+A +LG
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAK 87
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.3 bits (106), Expect = 6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G Y +++E+Y++AL++ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP--------------YYGLGQVQLKLGDFRS 360
+ E+A Y ++ + F + + +KL +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 361 ALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A+ + VL N KAL G +LGQ++ A++ RKA K P D
Sbjct: 249 AIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
K++ KEE A Q Y A ++G + G+ + + A K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKNPC-- 232
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKA 216
L A RY +++ L P A+ R G + +LGQ+ A
Sbjct: 233 -------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG--KAKAELGQMDSA 283
Query: 217 RQAFQRALQLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
R F++A + P++ L + + + ++ + +
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 22/151 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
EK++ A + Y MA+ Y+ + F F + N+A
Sbjct: 193 EKLEEAMQQY---EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL----------NIAAC 239
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y++A + + V + + + G+ + +LG SA +F K + PD
Sbjct: 240 LIKLKRYDEA-IGHCNIVLTEEEKNPKA--LFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + L + E+ + L +K ++
Sbjct: 297 DKAIRRELRAL------AEQEKALYQKQKEM 321
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 1e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
YY + G+Y ++ + ++ +++ P E + G+ L + A+ +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-P-EESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 368 VLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V+ + D N + A + E E+ AK++
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182
+ P + +G L G ++ F+ ++ D + L + +N RY +++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 183 EFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+ Y + V + + + + +L+ +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 5e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 405 I--DPRDAQAFIDLGELL 420
+ D + + + L
Sbjct: 69 VIEDEYNKDVWAAKADAL 86
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 9e-05
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---A 427
+ N E G + G ++ +L KA ++DP +++ ++ G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEE 58
Query: 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A+D + + +E +V E + +
Sbjct: 59 AVDCYNYV---INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P +S + ++ ++ YE+A Y + + + + +
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 362 LTNFEKVLEIYPDN 375
E ++ +
Sbjct: 96 AEIAEARAKLEHHH 109
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEF-----------IFPYYG-LGQVQLKLGDFRSAL 362
Y +G Y++A L Y V + F + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 363 TNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K LE+ +N K L G ++ + E A+ +K ++ P + A
Sbjct: 217 ESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KE + A Y K +E S E Q + A ++
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFS----------NEEAQKAQALRLAS---------H 199
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A +S ++E +AL++ + + R G + AR FQ+ L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG--EAHLAVNDFELARADFQKVL 257
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
QL P N A LA + A +K M
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y +L YK+ + A L + +C KL A +
Sbjct: 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217
Query: 219 AFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+ +AL+LD N + L A + + E A Q+ ++YP A LA
Sbjct: 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELA-----RADFQKVLQLYPNNKAAKTQLAV 272
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-08
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 12/236 (5%)
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ L + R KL + + N A+ + L +
Sbjct: 115 KTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLS--K 172
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
A + +I P+ L A+ + G + + +E + P
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF 232
Query: 305 SHSYYNLARSYHSKGDYE-------KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+++ A + A + ++ + + + Y L G
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+ +++ + LG +Y G +A + A + P +
Sbjct: 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 12/156 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL--------LAKG 142
+ + + ++ A++ + + K + L +
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 143 EVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
++ ++ ++ N +++ +A +G+ +S + + + S +
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
LG G +A A+ A L P
Sbjct: 316 LGKVY--EMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)
Query: 366 EKVLEIYPDNCETLKAL--GHIYVQLG---QIEKAQELLRKAAKIDPRDAQAFIDLGE-- 418
E + +I P L H Y+ G + +A ELL + + P A +
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243
Query: 419 LLISSDTGAALDAFKTARTLLKKAGEEVPI----EVLNNIGVIHFEKGEFESAHQSFKDA 474
++ S T + + + V KG+ + ++Q+
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Query: 475 L 475
+
Sbjct: 304 I 304
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP-------------YYGLGQVQLKLGDFRSA 361
+ K + +A + Y ++ E+ L K D+ A
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107
Query: 362 LTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + KVL+I +N +KAL G + G +E+A+E L KAA ++P +
Sbjct: 108 IDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKAR 217
F + ++++ YK AL + L + C K KA
Sbjct: 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108
Query: 218 QAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ L++D NV+AL +A M E A E + +A + P N
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEA-----KENLYKAASLNPNNLDIRNSYE 163
Query: 276 N 276
Sbjct: 164 L 164
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K+ A Y +A +H + +I
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNIEISC---------N 91
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y +++ + L++ + A+ +LG + G L +A++ +A
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG--VANMYFGFLEEAKENLYKAA 149
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
L+P N++ + ++ + M
Sbjct: 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+N + + +L + + + D+EKA ++Y ++ E++ P F Y V +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELD-PSNITF-YNNKAAVYFEEKK 57
Query: 358 FRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
F + EK +E+ + K G+ + + + A + ++
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
P+ Y N A Y + + + + +V E+ + + G K
Sbjct: 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN 97
Query: 357 DFRSALTNFEKVLEIYPDNCETLKAL 382
D A+ F + L + D E +K +
Sbjct: 98 DLSLAVQWFHRSLSEFRDP-ELVKKV 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-06
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G + + E+A + +E D N+ +A V F ++++ ++F ++A++V
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
+L G K L A Q F R+L +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQAFIDLGELLIS 422
D K LG+ + EKA KA ++DP + A + + +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF--- 58
Query: 423 SDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ + A + ++ + + + ++ G ++ + A Q F +L
Sbjct: 59 ---AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 4e-08
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 858 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 908
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 909 EQKRLRQQEEHFQR 922
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP---------------YYGLGQVQLKLGDFR 359
+ DY++A Y ++ ++ P Y + Q L +GD
Sbjct: 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH 80
Query: 360 SALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A +VL+ N KAL + ++++A+E L+ + P A
Sbjct: 81 EAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A Y A L + + +E DR N+P
Sbjct: 23 VQKDYKEAIDAYRDA----------------LTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
+ N G ++ E L+ + A+ R R +L +A + + L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA--KARIAAWKLDEAEEDLKLLL 124
Query: 225 QLDPENVEALVAL--AVMDLQANEAAGIRKGMEKM 257
+ P + V + +A + A R KM
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEK 367
YN+A G Y+ A +++ ++ + Y LG+ +F+ A F
Sbjct: 6 YNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64
Query: 368 VLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
++ YP + L LG G+ +AQ+ L++ A P A
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--------YYGLGQVQLKLGDF 358
+ Y L SY++ +++ A + V +P LG Q G
Sbjct: 41 ALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 359 RSALTNFEKVLEIYPDNCETLKA 381
A ++V YP + A
Sbjct: 93 TEAQQTLQQVATQYPGSDAARVA 115
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 3e-07
Identities = 27/234 (11%), Positives = 70/234 (29%), Gaps = 25/234 (10%)
Query: 5 YIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILE 64
Y+ ++ E + + ++ I+ +++ D++ + + E+ ++
Sbjct: 63 YVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKF-RDVYDYFRAVLQRDERSERAFKLTR 121
Query: 65 EGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124
+ + E++ V + R +L +L +E ++
Sbjct: 122 D--AIELNAANYTVWHFRRVLLKSLQKDL-----------HEEMNY------ITAIIEEQ 162
Query: 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184
W + L+ + Q +L D N A + V + + L++
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222
Query: 185 YKRALQVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ L+ + L + Q ++L P N A
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 14/142 (9%), Positives = 41/142 (28%), Gaps = 4/142 (2%)
Query: 302 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S + D + Y A ++E K ++ ++ + L D
Sbjct: 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ 184
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L +L N + + + + + + + K D R+ + ++
Sbjct: 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
Query: 421 ISSDTGAALDAFKTARTLLKKA 442
++ + +
Sbjct: 245 SNTTGYNDRAVLEREVQYTLEM 266
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ ++GD E A ++ +P YY +G KLGD++ AL N++
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 368 VLEIYPDN 375
+E+ PD+
Sbjct: 61 AIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 412 AF 413
Sbjct: 71 LQ 72
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
GDY A Y ++ P + + LKL D+ A T K +E +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+KAL +LG++++A L++ ++P++
Sbjct: 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F G Y +L Y +AL + + + C KL KA +A++ D +
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 231 VEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
V+AL + QA E G + + + +QR + P + L N
Sbjct: 99 VKALYRRS----QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + N KGDY +A +Y ++ + N P + Y KL +F+ A
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRN-PKDAKL-YSNRAACYTKLLEFQLA 69
Query: 362 LTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
L + E+ +++ P +K + KA ++ +KA +D +A
Sbjct: 70 LKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 419 LL 420
+
Sbjct: 127 CM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174
+++ S ++ KG KG+ QA + ++ + + +A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 175 RGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +L+ + +Q+ P+ R + KA +Q+AL LD EA
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKA--AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 234 LVAL 237
Sbjct: 121 ADGY 124
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ L + K D++ A +Y + E++ P + V + GD+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTY-ITNQAAVYFEKGDYNKCRE 59
Query: 364 NFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
EK +E+ +N E + +G+ Y + + + A K+
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
PT N A Y KGDY K ++ E+ + + + Y +G K
Sbjct: 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEE 93
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ A+ + K L + + LK ++A+++L++ ++
Sbjct: 94 KYKDAIHFYNKSLAEHRTP-DVLKKC----------QQAEKILKEQERL 131
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
R IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 321 YEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y K Y S +G +LK+ D++ A+ + + LEI P
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Query: 375 NCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDA 410
N KAL + L + ++A L+KA +I P D
Sbjct: 306 NT---KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+S + + ++ +Y KA Y ++ I P I+ G A
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIY-LSNRAAAYSASGQHEKA 64
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ E + P + LG + + A+E K + +
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 304 KSHSYY-NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+ Y N A +Y + G +EKA + ++ ++ + LG + + D++ A
Sbjct: 43 ANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP--KYSKAWSRLGLARFDMADYKGAK 99
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+EK +E + + L ++ E + A+ D
Sbjct: 100 EAYEKGIEAEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDD 144
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+G +A+ E +A + L N L +A G++ + E + A V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 194 SCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
A RLG L R+ + A++A+++ ++ +
Sbjct: 77 KYSKAWSRLG--LARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAI--RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F +G Y +++ Y + + P P + + KLG+ +A Q Q+ L+
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNK---AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 231 VEALV--ALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ L A A G ++ + ++ E Y
Sbjct: 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 11/223 (4%)
Query: 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163
+ + A QY ++S++ KG + AK ++A++ ++ +
Sbjct: 47 GHHPDIWYEAAQYLEQSSKL-------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99
Query: 164 AL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
L A E +R +Y Y R L + P + + + + R F++
Sbjct: 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A + V A+M+ ++ + + + Y + ++
Sbjct: 160 AREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKA 324
+ L E L + P KS + ++ S GD
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 21/254 (8%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE------------ 262
+ A+++ L + + + A Q+++ + M + +
Sbjct: 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + A++ ++ V + LA+ + PT + Y + +
Sbjct: 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIK 151
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + ++ H L + D A FE L+ Y D E + A
Sbjct: 152 SGRMIFKKAREDARTRHHVYV-TAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAY 209
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTART 437
L + + L + + ++ ++ D + L K T
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269
Query: 438 LLKKAGEEVPIEVL 451
++ E +L
Sbjct: 270 AFREEYEGKETALL 283
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 7e-06
Identities = 31/278 (11%), Positives = 65/278 (23%), Gaps = 63/278 (22%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ ++ ++ + +A +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293
A EA K A + F GQ
Sbjct: 74 DEAGNTY----VEAYKCFKSGGNSVNAVDSL-------ENAIQIFTHRGQF--------- 113
Query: 294 ALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYY---MASVKEINKPHEFIFPYYGLG 349
++ + L + DY KA Y + +
Sbjct: 114 --------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKA 402
++ G + A + K+++ N + G + A L++
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 403 AKIDP-----RDAQAFIDLGELLISSDTGAALDAFKTA 435
DP R++ L + + D +
Sbjct: 226 QSEDPNFADSRESNFLKSLIDAVNEGD----SEQLSEH 259
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 30/202 (14%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
E ++I+ GQ + + +I D D
Sbjct: 100 LENAIQIFTHR--------------GQFRRGANFKFELGEILENDLH------------D 133
Query: 425 TGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483
A+D ++ A + + + G++ A + + + L
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 484 LDSKTKTYVIDASASMLQFKDM 505
K Y + L D
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDA 215
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G+ + A Y ++K PH + Y K GD++ A + K +++ PD
Sbjct: 16 SVGNIDDALQCYSEAIK--LDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW- 71
Query: 377 ETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
K L + E+A+ + K + + Q L +
Sbjct: 72 --GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-------GRYSDSLEFYK 186
KG L+ G ++ A + ++ D N L NR G Y + E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYS------NRSAAYAKKGDYQKAYEDGC 62
Query: 187 RALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+ + + P R L + +A++ ++ L+ + N + L
Sbjct: 63 KTVDLKPDWGKGYSRKA--AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P Y N + +Y KGDY+KA +V ++ ++ Y L F A
Sbjct: 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP--DWGKGYSRKAAALEFLNRFEEA 91
Query: 362 LTNFEKVLEIYPDNCETLKAL 382
+E+ L+ +N + + L
Sbjct: 92 KRTYEEGLKHEANNPQLKEGL 112
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
KGDY A +Y +VK P I Y KL +F+ AL + + + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+K V + + KAQ A ++DP + +A
Sbjct: 81 -IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
+ + I+ KG KG+ A + ++ D +N +A +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+L+ +++ IR C + + KA++A++ ALQ+DP N EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKA--ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
DYE A +Y ++ E+N P I+ Y L+ + AL + + +E+
Sbjct: 25 KAKDYENAIKFYSQAI-ELN-PSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ + LG+ A K+ P D A + E
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
Y +L RA+++ R LG+ A + ++ +++ P + +A
Sbjct: 61 ECYGYALGDATRAIELDKKYIKGYYRRA--ASNMALGKFRAALRDYETVVKVKPHDKDAK 118
Query: 235 VAL-----AVMDLQANEAAGIRKGMEKMQRAFEI 263
+ V A + + + +I
Sbjct: 119 MKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P+ + Y N + +Y Y A ++ E++K ++I YY + LG FR+A
Sbjct: 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDK--KYIKGYYRRAASNMALGKFRAA 100
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
L ++E V+++ P + + + ++ + A ++ +D
Sbjct: 101 LRDYETVVKVKPHDKDAKMKYQECN------KIVKQKAFERAIAGDEHKRSVVD 148
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K+ + Y +K D+ A Y +K P + Y KL F A+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG-YSNRAAALAKLMSFPEAIA 59
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K +E P+ + + + A E L A D
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN 364
Y +A K DYE L + + + + + + G + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 365 FEKVLEIYPD-------NCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQ 411
FE++L+ + + + E++ + KA +I Q
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 412 AFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453
+ GE L + + DA+K A E L N
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVN 281
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 9e-05
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 410 AQAFIDLGELL 420
L L+
Sbjct: 65 LPGASQLRHLV 75
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 1e-04
Identities = 35/366 (9%), Positives = 86/366 (23%), Gaps = 26/366 (7%)
Query: 47 AREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREK 106
++ +Q +V+ R++ + + ++R T I +
Sbjct: 201 VNKFEEQQRVQYIRKLYKT--LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQY 258
Query: 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166
L + N + + P T + L K + ++ L
Sbjct: 259 MNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE 318
Query: 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
+ R Y Y +A Q P K + + Q
Sbjct: 319 LSDDLHKARMTYV-----YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373
Query: 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
P + +L+ K+ C ++
Sbjct: 374 IPNSAVLAFSLSEQYELNT----------KIPEIETTILSCIDRIHLDLAALM------- 416
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E A+ ++ Y + + + + I+
Sbjct: 417 -EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + D ++A E L+ + + E + + + + + + L +
Sbjct: 476 AYIEYHIS-KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534
Query: 407 PRDAQA 412
Sbjct: 535 SDSHLL 540
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 21 VGRKYPEAAACYGRAITR--NPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 17/173 (9%)
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 809
+ ++ H+ LL+ MQ LQ+T+
Sbjct: 826 YNVRSFMNVXHWPWMXLFFXIXPLLKVTRQE-----------EEMQAKDE-ELQRTKERQ 873
Query: 810 DEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAERE 869
+ + + ELE + L E ++ E + L A K E E
Sbjct: 874 QKAEAELKELEQKHT--QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931
Query: 870 EQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 922
+ R +E R L E ++ +Q+ LE++ E+E R + Q E
Sbjct: 932 ME-ARIEEEEERSQQLQAEKKKM--QQQMLDLEEQLEEEEAARQKLQLEKVTA 981
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 15/211 (7%)
Query: 723 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782
++F G A + + AQ YLAR + Q Q ++ +
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRS-- 830
Query: 783 NYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDE 842
+ F L K R +E+++ EL+ A L ++
Sbjct: 831 -FMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEA----ELKELEQ 885
Query: 843 KKINTHVEYCKHLLDAAKIHREAAEREEQQNR-QRQEAARQAALAEEARRKAEEQK---K 898
K E AE EE + R ++ + L E R EE++ +
Sbjct: 886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ 945
Query: 899 YLLEKRKLEDE----QKRLRQQEEHFQRVKA 925
EK+K++ + +++L ++E Q+++
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 16 VGRKYPEAAACYGRAIT--RNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 16/185 (8%)
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYTL--RFDAGVAMQKFSASTLQKT 805
I +L R Y + + ++ R + H A T R A + +QKF +
Sbjct: 776 KTIRGWLMRKKYM--RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ--RMYVV 831
Query: 806 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREA 865
R+ +R L+ +R + N + E K ++ + L HR
Sbjct: 832 RKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 866 AEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 922
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + ++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEYKS 946
Query: 923 VKARI 927
+ ++
Sbjct: 947 LLEKM 951
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 411
L+ G+ AL + + + + A ++ Q E AQELL +
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 412 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467
+ I EL + L + A E+ + V + + G E A
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQEL-----AANPDNFELACELAVQYNQVGRDEEA 127
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 11/244 (4%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
LG + A Q ++ + L M+ + E+ +
Sbjct: 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYF 325
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
A++ ++ V + LA+ + PT + Y + + + + +
Sbjct: 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIKSGRMIFKKAR 383
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 392
++ + ++ L + D A FE L+ Y D E + A L +
Sbjct: 384 EDA-RTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441
Query: 393 EKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVP 447
+ L + + ++ ++ D + L K T ++ E
Sbjct: 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 501
Query: 448 IEVL 451
+L
Sbjct: 502 TALL 505
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 7e-04
Identities = 28/196 (14%), Positives = 55/196 (28%), Gaps = 10/196 (5%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274
+ L E + + + +K +E R E+ ++L Y
Sbjct: 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVE---RGIEMSDGMFLSLYY- 252
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
+ +++ A + N K E ++
Sbjct: 253 GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
E PH FI Y + G + F L +PD+ + +++G
Sbjct: 313 GNEGVGPHVFI--YCAFIEYYAT-GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369
Query: 392 IEKAQELLRKAAKIDP 407
E A+ L ++ K
Sbjct: 370 EENARALFKRLEKTSR 385
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 9e-04
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
K +++ ++ K L AD D+ PAL +A +E
Sbjct: 19 KQALKKLQASLK--LYAD-DSAPALAIKATME 47
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 942 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.98 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.98 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.96 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.89 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.85 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.85 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.85 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.85 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.84 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.84 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.84 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.83 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.82 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.81 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.77 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.77 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.76 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.76 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.76 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.74 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.73 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.71 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.66 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.65 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.64 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.6 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.57 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.52 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.51 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.51 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.49 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.49 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.47 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.42 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.4 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.4 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.4 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.4 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.38 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.38 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.36 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.35 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.34 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.25 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.19 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.13 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.11 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.9 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.87 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.81 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.77 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.71 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.7 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.55 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.52 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.42 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.32 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.15 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.98 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.86 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.54 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.39 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.34 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.3 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.27 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.06 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.91 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.69 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.52 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.32 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.3 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.67 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.28 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.41 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.31 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.14 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.94 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 92.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.87 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.16 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.91 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.68 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.89 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.15 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 87.09 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 86.15 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 82.38 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-40 Score=382.31 Aligned_cols=505 Identities=12% Similarity=0.024 Sum_probs=402.7
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
...+..++..+...|++++|+..|++++...|+ ...+..++.++...|+ +++|+..|++++.. |.++.++..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~~l~~ 158 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGD---YARAKCLLTKEDLY-NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHTCGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCc---HHHHHHHHHHHhcc-ccchhHHHHHHH
Confidence 445566666666667777777777666666663 3455666666666666 66666666665433 445555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
+|...|++++|..++++.. |.... +...... .......+....+++.+|.+|...|
T Consensus 159 ~~~~~g~~~~A~~~~~~~~------~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETN------PFRKD-----EKNANKL-------------LMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSC------TTC----------------------------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHhccC------Ccccc-----ccccccc-------------cccccccchhHHHHHHHHHHHHHcC
Confidence 6666666665555555321 11100 0000000 0000112345778999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCcCc-HHHHHHHHHHH-hcCCHhHHHHH
Q 002286 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDA 431 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---~~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~ 431 (942)
++++|+..|+++++.+|++..++..++.++...+....+... +......++.. ...+..++..+ ..|++++|+..
T Consensus 215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 999999999999999999999999999887766544433222 33333222222 22344456677 88999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhh
Q 002286 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (942)
Q Consensus 432 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (942)
|+++... + .+..+++.++.++...|++++|+..|++++.
T Consensus 295 ~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------- 333 (597)
T 2xpi_A 295 LSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILE----------------------------------- 333 (597)
T ss_dssp HHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHhhcC-C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------------------
Confidence 9988765 2 3689999999999999999999999999997
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
..|.+..++..++.++...|++++|...+++++...|+++.++..+|.++...|++++|+.+|++++..+|.
T Consensus 334 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 334 --------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp --------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 446678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC
Q 002286 592 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (942)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (942)
++.++..++.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+.+|++++..+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSSYALF 471 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998876 67788889999 9988 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
|.++.+++.+|.++...|++++|+.+|+++++..|..+ .|.. +.+|.++|.++...|++++|+..|++++.. .+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 549 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--STND 549 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSCC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC
Confidence 99999999999999999999999999999999865321 1232 789999999999999999999999999998 5667
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHH
Q 002286 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 795 (942)
+.++..+|.+|...|++++|..+|+++++++|+++.++.+++.+|.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=355.39 Aligned_cols=383 Identities=20% Similarity=0.254 Sum_probs=353.8
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCC
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 424 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~ 424 (942)
+.+|..++..|++++|+..+.+++..+|+++.++..+|.++...|++++|...++.+++.+|.++.++..+|.++ ..|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 457888889999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhh
Q 002286 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (942)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (942)
+++|+..|++++...|. ....+..+|.++...|++++|+..|++++.
T Consensus 83 ~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------- 129 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Confidence 99999999998887554 577889999999999999999999999988
Q ss_pred hhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002286 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
..|....++..+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++
T Consensus 130 ---------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 130 ---------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ---------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ---------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHH
Q 002286 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (942)
++..+|+++.++..+|.++...|++++|+..|.+++...|. +..++..+|.+ |... |++++|+..|
T Consensus 195 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~ 260 (388)
T 1w3b_A 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTY 260 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHH-HHHc------------CCHHHHHHHH
Confidence 99999999999999999999999999999999999998887 67788889999 8888 9999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhh
Q 002286 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (942)
Q Consensus 665 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 744 (942)
++++..+|+++.++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|+++++.
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 334 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV- 334 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 999999999999999999999999999999999999999987 78999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 745 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
.+.++.++..+|.++...|++++|+..|+++++..|+++.+++++|.++..+
T Consensus 335 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 4567889999999999999999999999999999999999999999987654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=349.59 Aligned_cols=383 Identities=22% Similarity=0.279 Sum_probs=288.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
.+|..++..|++++|+..|.++++.+|+++.++..++.++...|++++|...++.++..+|.+ +.++..+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence 457778888888888888888888888888888888888888888888888888888888887 6678888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~ 292 (942)
+++|+..|++++..+|++..++..+|.++...|+ +++|+..|++++..+|++..++..++.++...|++++|...+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888888888888888888888888888 8888888888888888887777777777777777777777777
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC
Q 002286 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (942)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (942)
+++... |..+.++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..|++++..+
T Consensus 160 ~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 766543 55556777777777777777777777777776 456667777777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHH
Q 002286 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (942)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (942)
|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++...|. ++.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHH
Confidence 777777777777777777887788777777777777777777777777 777777777777777665433 45666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHH
Q 002286 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (942)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (942)
..+|.++...|++++|+..|++++. ..|....+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l 345 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCCcHHHHHHH
Confidence 6666666666666666666666665 445556666666
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 002286 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (942)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 573 (942)
|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666666665554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=381.81 Aligned_cols=486 Identities=14% Similarity=0.053 Sum_probs=320.9
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.++..|..++..+...|++++|+..|++++...|+ ...++.+|.++...|++++|+..|++++.. |.+ +.++..+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRS-SACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccc-hhHHHHHHH
Confidence 45677889999999999999999999999999884 477889999999999999999999998765 445 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPEN-------------------VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+|...|++++|+..|++ ..|.. ..+|..+|.++...|+ +++|+..|++++..+|.
T Consensus 159 ~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCch
Confidence 99999999999999986 34544 7789999999999998 99999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 002286 267 CAMALNYLANHFFFTGQHFLVEQL---TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (942)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 343 (942)
++.++..++.++...+....+... +...... ........+..++..|...|++++|+..|.+++.. +....
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 306 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE--DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSD 306 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG--GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccc--hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHH
Confidence 988888887766544333221110 1111100 00111122333345555555666666666555531 34445
Q ss_pred hhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcC
Q 002286 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 423 (942)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 423 (942)
++..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|+..+++++...|+++.++..++.++
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--- 383 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY--- 383 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH---
Confidence 55556666666666666666666666555555555555666666666666666666655555555555555555555
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
...|++++|+..|++++.
T Consensus 384 -----------------------------------~~~g~~~~A~~~~~~~~~--------------------------- 401 (597)
T 2xpi_A 384 -----------------------------------LCVNKISEARRYFSKSST--------------------------- 401 (597)
T ss_dssp -----------------------------------HHTTCHHHHHHHHHHHHH---------------------------
T ss_pred -----------------------------------HHhccHHHHHHHHHHHHH---------------------------
Confidence 444444444444444444
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..|.+..++..++.++...|++++|+..|++++...|++..++..++.++...|++++|+.+|+
T Consensus 402 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 402 ----------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233444555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc------CCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHH
Q 002286 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA------TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657 (942)
Q Consensus 584 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~ 657 (942)
+++...|.++.++..+|.++...|++++|+..|++++.. .|.....++..+|.+ |... |++
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~ 532 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA-YRKL------------KMY 532 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH-HHHT------------TCH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH-HHHh------------cCH
Confidence 555555555555555555555555555555555555554 222114566677777 7777 777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 002286 658 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (942)
Q Consensus 658 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~ 725 (942)
++|+..|++++..+|+++.++..+|.+|...|++++|+..|+++++..| +++.++..++.+|.
T Consensus 533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-----NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHh
Confidence 7777777777777777777788888888888888888888888887776 67777777777653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=333.76 Aligned_cols=316 Identities=12% Similarity=0.101 Sum_probs=232.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV--------QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 422 (942)
.+....+...++..+.+.....+........++.++. ..|++++|+..|+++++.+|+++..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~---- 244 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL---- 244 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH----
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH----
Confidence 3444455555554444444444444444444443332 3357888888888888888888766554433
Q ss_pred CCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
++..+|.++...|++++|+..|++++.
T Consensus 245 ---------------------------~~~~~g~~~~~~~~~~~A~~~~~~~~~-------------------------- 271 (537)
T 3fp2_A 245 ---------------------------ALCYTGIFHFLKNNLLDAQVLLQESIN-------------------------- 271 (537)
T ss_dssp ---------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred ---------------------------HHHHHHHHHHhcccHHHHHHHHHHHHh--------------------------
Confidence 345567788888888888888888887
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 582 (942)
..|. ..++..+|.++...|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+
T Consensus 272 -----------------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 272 -----------------LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp -----------------HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3454 6778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHH
Q 002286 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662 (942)
Q Consensus 583 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~ 662 (942)
++++..+|.++.++..+|. + |... |++++|+.
T Consensus 334 ~~a~~~~~~~~~~~~~la~-----------------------------------~-~~~~------------g~~~~A~~ 365 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLAC-----------------------------------L-LYKQ------------GKFTESEA 365 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHH-----------------------------------H-HHHT------------TCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHH-----------------------------------H-HHHc------------CCHHHHHH
Confidence 8888777776655554444 4 5555 66666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC-chhHHHHHHHHHHHh----------cCHH
Q 002286 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ-MPDVWINLAHVYFAQ----------GNFA 731 (942)
Q Consensus 663 ~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~~~~la~~~~~~----------g~~~ 731 (942)
.|++++..+|+++.++..+|.++...|++++|+..|+++++..|...... ....++.+|.++... |+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 66777777788888888888999999999999999999998887543221 233467788999999 9999
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 732 ~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
+|+..|++++.. .+.++.++..+|.++...|++++|+.+|++++.+.|+++.....+.
T Consensus 446 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 446 AAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 999999999998 5667899999999999999999999999999999999877654433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.67 Aligned_cols=426 Identities=15% Similarity=0.132 Sum_probs=352.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 45678888888888888888888888888888 68888888888888888888888888888888888 67788888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH---------------------------
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA--------------------------- 260 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~--------------------------- 260 (942)
..+|++++|+..|++++..+|.+......+..............+++..++.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 88888888888888888888765444333322222221111111222111111
Q ss_pred -------HHh--------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CCCC----CchhHHHHHH
Q 002286 261 -------FEI--------YPYCAMALNYLANHFFF---TGQHFLVEQLTETALA-----V--TNHG----PTKSHSYYNL 311 (942)
Q Consensus 261 -------~~~--------~p~~~~~~~~la~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~----~~~~~~~~~l 311 (942)
+.. .|.++.++..++..++. .|++++|+..+++++. . .+.. |..+.+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 14557888888988887 8999999999999998 4 2222 5667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002286 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (942)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (942)
|.++...|++++|+..|.+++.. .|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999984 455 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (942)
+++|+..+++++...|.++.++..+|.++ ..|++++|+..+++++...|. .+.++..+|.++...|++++|+..
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987554 468899999999999999999999
Q ss_pred HHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhh---cCCHHHHHHH
Q 002286 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVL 547 (942)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 547 (942)
|++++...+... .......++..+|.++.. .|++++|+..
T Consensus 395 ~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 395 YDLAIELENKLD-------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHTSS-------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccc-------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 999998543100 011124589999999999 9999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhh
Q 002286 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (942)
Q Consensus 548 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 601 (942)
+++++..+|+++.++..+|.++...|++++|..++++++..+|+++.++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=329.42 Aligned_cols=452 Identities=16% Similarity=0.129 Sum_probs=351.5
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
+....+..+|..+...|+.. +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 45678899999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VAL 237 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l 237 (942)
++.+++.+|.++...|++++|+..|+ ++..+|+.... + ...+...+....|+..+++++...|...... ...
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 166 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH-H---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH
Confidence 99999999999999999999999995 88888876322 2 2244455666889999999888765432210 111
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCCCc----hh
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF--------FTGQHFLVEQLTETALAVTNHGPT----KS 305 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~----~~ 305 (942)
...+....+ ...++..+.+....++........++..+. ..|++++|...+++++...+..+. ..
T Consensus 167 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 167 LASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHhcC---hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 111222233 333333333333333333333333333222 234666677777766655433322 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
.++..+|.++...|++++|+..|.+++.. .|. ..++..+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 56888999999999999999999999984 455 78899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 002286 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (942)
Q Consensus 386 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (942)
+...|++++|+..+++++..+|+++.++..+|.++ ..|++++|+..+++++...|. ++.++..+|.++...|++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTTCH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999 999999999999999987554 578899999999999999
Q ss_pred HHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc------
Q 002286 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI------ 538 (942)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 538 (942)
++|+..|++++...+... ........++.+|.++...
T Consensus 395 ~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQE-------------------------------------KIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp HHHHHHHHHHHHHHHHCS-------------------------------------SCSSTTHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCcch-------------------------------------hhHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999998543110 1112334467778888888
Q ss_pred ----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHH
Q 002286 539 ----HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (942)
Q Consensus 539 ----g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 597 (942)
|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++..+|+.+....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=323.15 Aligned_cols=440 Identities=15% Similarity=0.127 Sum_probs=360.4
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002286 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (942)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (942)
.+..+..+|..+...|++++|+..|.+++.. .| ...++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3577889999999999999999999999984 34 4778999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcC---CHhHHHHHHHHHHH----------------------
Q 002286 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTART---------------------- 437 (942)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~---------------------- 437 (942)
.++...|++++|+..|++++...|.+......+.... ... ...+++..++.+..
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999998886543332222211 111 11111111111100
Q ss_pred ------HHHHcC---------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhh
Q 002286 438 ------LLKKAG---------EEVPIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (942)
Q Consensus 438 ------~~~~~~---------~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (942)
...... .+.+...+...|.+++. .|++++|+..|++++...... ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~------------- 225 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ--LDK------------- 225 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH--TTT-------------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh--hcc-------------
Confidence 000000 01226778888888886 899999999999998721000 000
Q ss_pred HhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH
Q 002286 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 579 (942)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 579 (942)
........|....+++.+|.++...|++++|+..+++++..+|+ ..++..+|.++...|++++|+
T Consensus 226 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 226 --------------NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp --------------STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGG
T ss_pred --------------CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHH
Confidence 00000012557889999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHH
Q 002286 580 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (942)
Q Consensus 580 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (942)
..+++++..+|.++.++..+|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~ 356 (514)
T 2gw1_A 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL-AYRE------------NKFDD 356 (514)
T ss_dssp GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH-TTTT------------TCHHH
T ss_pred HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH-HHHc------------CCHHH
Confidence 9999999999999999999999999999999999999999998887 66788889988 8888 99999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHH---hcCHHHHHH
Q 002286 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFA---QGNFALAMK 735 (942)
Q Consensus 660 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~la~~~~~---~g~~~~A~~ 735 (942)
|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|..... ....+++++|.++.. .|++++|+.
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999998843110 114499999999999 999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 736 ~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.|++++.. .+.++.++..+|.++...|++++|...|++++.++|+++.++..+.+.
T Consensus 437 ~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 437 LLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999998 566789999999999999999999999999999999999988877664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=300.57 Aligned_cols=379 Identities=19% Similarity=0.166 Sum_probs=274.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.+...+.+++..+|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+|++ ..++..+|.++...|++++|+..|+++++.+|++. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------------
Confidence 5555 44455555555555555555555555555555544 333333332111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
..++.+|.++...|++++|+..|.+++. ..|....++..+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 3345667788888999999999999987 457778889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A 428 (942)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..++.+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999988776654432
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhh
Q 002286 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (942)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (942)
.......+|.++...|++++|+..|++++..
T Consensus 256 ------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------------------------------- 286 (450)
T 2y4t_A 256 ------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT------------------------------- 286 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------------------
T ss_pred ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------------------
Confidence 1233455688899999999999999999883
Q ss_pred hhhccCCCCCCCCCcc----hhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002286 509 HRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (942)
Q Consensus 509 ~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 584 (942)
.|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++
T Consensus 287 ------------~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 287 ------------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp ------------CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3333 447888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhHHHHhh------------hhhcccc-----chHHHHHHHHH-hhccCCC
Q 002286 585 ALKVNGKYPNALSMLG------------DLELKND-----DWVKAKETFRA-ASDATDG 625 (942)
Q Consensus 585 ~l~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~ 625 (942)
+++.+|+++.++..++ .+|...| +..++...|++ ++...|+
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999888 4455555 45666777776 6666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=298.29 Aligned_cols=330 Identities=15% Similarity=0.179 Sum_probs=261.5
Q ss_pred HHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (942)
Q Consensus 88 ~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 167 (942)
.-+..+..+|... .+.|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..
T Consensus 24 ~~~~~~~~~~~~~----~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKL----LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455666666655 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCch---hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 168 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+|.++...|++++|+..|++++..+|.+ . .++..++.++.. ..+..+|.++...
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSE-NEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHc
Confidence 9999999999999999999999999987 5 556666555322 2345667778888
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHH
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (942)
|+ +++|+..|++++...|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|
T Consensus 157 ~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 157 GD---YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp TC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88 9999999999999999999999999999999999999998888888754 55567888888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchhhhhcH------------HHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHH
Q 002286 325 GLYYMASVKEINKPHEFIFPYYGL------------GQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQ 388 (942)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~ 388 (942)
+..|.+++.. .|.....+..+ |.++...|++++|+..|++++...|+++. ++..+|.++..
T Consensus 231 ~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 8888888863 45555554444 77777777777777777777777777633 56677777777
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002286 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 458 (942)
.|++++|+..+++++..+|+++.++..+|.++ ..|++++|+..|++++++.|. ++.++..++.+.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 373 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-----DQQIREGLEKAQ 373 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHH
Confidence 77777777777777777777777777777777 777777777777776665433 355555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-30 Score=275.68 Aligned_cols=345 Identities=19% Similarity=0.184 Sum_probs=261.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666555555 44555555555
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 208 YKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
...|++++|+..|+++++.+| ++..++..++.+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------ 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------------------------
Confidence 555555555555555555555 44444443333211
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHH
Q 002286 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (942)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (942)
...+..+|.++...|++++|+..+.+++. ..|....++..+|.++...|++++|+..
T Consensus 120 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 120 --------------------MQRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 13345677888889999999999999987 4567778899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCC
Q 002286 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (942)
+++++...|+++.++..+|.++...|++++|+..++++++..|++..++..+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 232 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------------------ 232 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999887665443322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc
Q 002286 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (942)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (942)
.......+|.++...|++++|+..|++++... |.+
T Consensus 233 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------------~~~ 267 (359)
T 3ieg_A 233 --KLNKLIESAEELIRDGRYTDATSKYESVMKTE-------------------------------------------PSV 267 (359)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSS
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------------------------CCc
Confidence 13445566889999999999999999998842 333
Q ss_pred h----hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhh
Q 002286 525 V----TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (942)
Q Consensus 525 ~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 600 (942)
+ .++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++
T Consensus 268 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3 456778999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhcccc
Q 002286 601 DLELKND 607 (942)
Q Consensus 601 ~~~~~~g 607 (942)
.++...+
T Consensus 348 ~~~~~~~ 354 (359)
T 3ieg_A 348 KAQRLLK 354 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8865543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-29 Score=272.24 Aligned_cols=323 Identities=17% Similarity=0.157 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
+..+..+|..+...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLA-----------DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 457788999999888877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCchhhHhhH------------HHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHP---SCPGAIRLGI------------GLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
.++..+|.++...|++++|+..|++++..+| ++ ..++..+ |.++...|++++|+..|+++++.+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 66 5556555 799999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 002286 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (942)
Q Consensus 228 p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (942)
|.++.++..+|.++...|+ +++|+..+++++..+|.++.++..+|.++...|++++|...+++++...+..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE---PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999876444332111
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q 002286 308 ---------YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (942)
Q Consensus 308 ---------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (942)
...+|.++...|++++|+..|.+++...+.++.. ..++..+|.++...|++++|+..++++++.+|+++.
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 2344888999999999999999999854322111 134667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
++..+|.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999998888887766
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=292.15 Aligned_cols=275 Identities=17% Similarity=0.154 Sum_probs=193.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEA---------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-- 195 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-- 195 (942)
....+..+|.++..+|++++|+..|+++++. +|....++..+|.+|...|++++|+..|++++.+.|..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456778999999999999999999999875 67778899999999999999999999999999874321
Q ss_pred -----chhhHhhHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 196 -----PGAIRLGIGLCRYKL--GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 196 -----~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
.+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++...++.+..++|+..++++++++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 256677788777765 4799999999999999999999999999887776554447889999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
.++..++..+...+ ...|++++|..++++++. ..|....++..+
T Consensus 210 ~~~~~l~~~~~~~~---------------------------------~~~~~~~~a~~~~~~al~---~~~~~~~~~~~l 253 (472)
T 4g1t_A 210 YLKVLLALKLHKMR---------------------------------EEGEEEGEGEKLVEEALE---KAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------------hhhhHHHHHHHHHHHHHH---hCccHHHHHHHH
Confidence 87776665543322 233455566666666665 345556666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCcCc
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-------------------GQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~~l~~~p~~ 409 (942)
|.++...|++++|+..++++++.+|+++.++..+|.+|... +.++.|+..+++++..+|.+
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 66666666666666666666666666666666666665433 22344444444444444444
Q ss_pred HHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 002286 410 AQAFIDLGELL-ISSDTGAALDAFKTART 437 (942)
Q Consensus 410 ~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (942)
..++..+|.++ ..|++++|+..|++++.
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 44444444444 44444444444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=284.96 Aligned_cols=363 Identities=15% Similarity=0.079 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC-------
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEI------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------- 372 (942)
..+..+|.++...|++++|+.+|+++++.. ...+....++.++|.+|..+|++++|+.++++++.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 444455555555555555555555554321 1123344445555555555555555555555555431
Q ss_pred -CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH----hcCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 373 -PDNCETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 373 -p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
+..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++ ..++.++|+..+++++.+.|.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~---- 207 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD---- 207 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS----
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc----
Confidence 223444555554444332 455555555555555555555555555442 234445555555555544322
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCC
Q 002286 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (942)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (942)
++.++..+|..+.. .|++++|..+|++++. ..
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-------------------------------------------~~ 243 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-------------------------------------------KA 243 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHH-------------------------------------------HC
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------------------------------------------hC
Confidence 34444444443332 2445555555555555 34
Q ss_pred CcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------------cCChhHHHHHH
Q 002286 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-------------------RNNLQLSIELV 582 (942)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------------~~~~~~A~~~~ 582 (942)
|....++.++|.++...|++++|+..|.++++.+|+++.++..+|.++.. .+.++.|+..+
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45555566666666666666666666666666666666666666555433 23356677777
Q ss_pred HHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCch--hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHH
Q 002286 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660 (942)
Q Consensus 583 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A 660 (942)
++++..+|.++.++..+|.++...|++++|+..|++++...+.+.. ..+..+|.+.+... |++++|
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A 391 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM------------KCEDKA 391 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS------------SCHHHH
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC------------CCHHHH
Confidence 7777777777777777777777777777777777777776654222 12334444312222 667777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
+..|+++++++|++......+ ..+..++.+++..+| .++.+|.++|.+|...|++++|+++|+++
T Consensus 392 i~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p-----~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNG-----ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC------CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777665433222 233445566666665 55666777777777777777777777777
Q ss_pred Hhh
Q 002286 741 LRK 743 (942)
Q Consensus 741 l~~ 743 (942)
++.
T Consensus 457 Le~ 459 (472)
T 4g1t_A 457 LES 459 (472)
T ss_dssp ---
T ss_pred Hhc
Confidence 665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-28 Score=257.13 Aligned_cols=302 Identities=17% Similarity=0.224 Sum_probs=276.7
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
...+...|.++..++.+|..++..|++++|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|.+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-P 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-H
Confidence 345566788999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hhHhhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (942)
Q Consensus 198 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 276 (942)
.+++.+|.++...| ++++|+..|++++..+|.++.++..+|.++...|+ +++|+..+++++...|.+..++..+|.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC------CCCchhhhhcHHH
Q 002286 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK------PHEFIFPYYGLGQ 350 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~la~ 350 (942)
++...|++++|...+++++... |..+.++..+|.++...|++++|+.++.+++...+. .+....++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999865 666799999999999999999999999999985421 1555678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--hcCCHh
Q 002286 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTG 426 (942)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~ 426 (942)
++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.++ ..|+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-26 Score=255.83 Aligned_cols=393 Identities=15% Similarity=0.138 Sum_probs=292.2
Q ss_pred chhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 002286 303 TKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPD 374 (942)
Q Consensus 303 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~ 374 (942)
.++.+++.+|.+|.. .+++++|+.+|+++.+ ...+.+++.+|.+|.. .+++++|+.+|+++.+. .
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-----QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 344666677777766 6777777777777765 2455677777777777 77777777777777663 4
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h----cCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 375 NCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 375 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~----~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
++.+++.+|.+|.. .+++++|+.+|+++... +++.++..+|.+| . .+++++|+.+|+++.+.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 67777777777777 67777777777777654 4677777777777 4 56777777777777653
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCC
Q 002286 446 VPIEVLNNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (942)
Q Consensus 446 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (942)
.++..+..+|.++.. .+++++|+.+|+++...
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------------------- 216 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------------------------------------------- 216 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------------------------------------------
Confidence 146777778888777 77888888888887762
Q ss_pred CcchhHHHHHHHHHhh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhhcCCCh
Q 002286 522 WNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNGKYP 593 (942)
Q Consensus 522 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~p~~~ 593 (942)
.++.+.+.+|.++.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++.+. .++
T Consensus 217 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 217 -GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 255677788888775 67888888888887764 456778888888887 78888888888888654 567
Q ss_pred hHHHHhhhhhccc-----cchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 594 NALSMLGDLELKN-----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 594 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
.++..+|.+|... +++++|+..|+++.+.. +..+++.+|.+ |..... .+++++|+.+|++++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-y~~~g~---------~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI-YFRLGS---------EEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-HHHSCC---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH-HHhCCC---------cccHHHHHHHHHHHH
Confidence 7888888888776 78888888888887764 45677778887 766400 058899999999998
Q ss_pred hcCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHH
Q 002286 669 VQHTSNLYAANGAGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNC 740 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 740 (942)
+. +++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++
T Consensus 359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 86 678899999999988 789999999999998853 57899999999998 89999999999999
Q ss_pred HhhhCC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 741 LRKFYY-NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 741 l~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
+...++ +.++.+...+|.++.. +...|.+...+.++..|++.
T Consensus 430 ~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~ 472 (490)
T 2xm6_A 430 STNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEA 472 (490)
T ss_dssp HHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHH
T ss_pred HHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 998644 2357788888887654 34455555555555556443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=252.18 Aligned_cols=397 Identities=16% Similarity=0.122 Sum_probs=284.2
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~ 184 (942)
++..+.++.. +.++.+++.+|.+|.. .+++++|+..|+++... .++.+++.+|.++.. .+++++|+.+
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4555665544 6788999999999998 89999999999999876 578999999999998 8999999999
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hccHHhHHHHHHH
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEK 256 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~A~~~ 256 (942)
|+++...+ + +..++.+|.+|.. .+++++|+.+|+++.+. +++.+++.+|.++.. .++ +++|+..
T Consensus 102 ~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~ 173 (490)
T 2xm6_A 102 YKKAALKG--L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD---YVMAREW 173 (490)
T ss_dssp HHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHH
T ss_pred HHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 99998753 4 5678889999998 88999999999998765 578899999999887 556 8899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh----cCCHHHHHHHH
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYY 328 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 328 (942)
|+++.+. .++.++..+|.+|.. .+++++|..+++++... ..+.+++.+|.+|.. .+++++|+.+|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9988775 467778888887777 77777777777777653 234677777777775 67777777777
Q ss_pred HHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 002286 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELL 399 (942)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~ 399 (942)
+++.. .....+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|
T Consensus 247 ~~a~~-----~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAE-----QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 77764 2445667777777776 67777777777777653 4566777777777776 6777777777
Q ss_pred HHHHHhCcCcHHHHHHHHHHH-hcC---CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 002286 400 RKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSF 471 (942)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 471 (942)
+++.+. .++.++..+|.++ ..| ++++|+.+|+++.+. .++.+++.+|.++.. .+++++|+.+|
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777665 3456667777776 434 566677777666653 145666677777666 66777777777
Q ss_pred HHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhh----cCCHHHHHHH
Q 002286 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVL 547 (942)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 547 (942)
+++... .++.+++++|.+|.. .+++++|..+
T Consensus 391 ~~A~~~---------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 391 RKAAEQ---------------------------------------------GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHT---------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHhC---------------------------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 766652 145566666666666 6666666666
Q ss_pred HHHHHHhCCC---cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 548 YRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 548 ~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
|++++...|+ ++.+...++.++.. +...|.....+.++..|+
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHH
Confidence 6666666633 55555555555432 233344444444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=256.65 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=198.6
Q ss_pred HHHHHHH-HHHHHhhcCCCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002286 109 HFILATQ-YYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (942)
Q Consensus 109 ~~~~A~~-~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 183 (942)
+|++|+. .|++++...|.++ ..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 4458998 9999998888764 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------------HHHHHhhccH
Q 002286 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------------AVMDLQANEA 247 (942)
Q Consensus 184 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------------~~~~~~~~~~ 247 (942)
.|++++..+|++ ..++..+|.++...|++++|+..|++++..+|.+...+..+ +.++ ..|+
T Consensus 120 ~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 196 (368)
T 1fch_A 120 ALRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL- 196 (368)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH-
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc-
Confidence 999999999998 77899999999999999999999999999999887665432 2222 2332
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHH
Q 002286 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (942)
Q Consensus 248 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (942)
+++|+..+++++..+|.. + .+.++..+|.++...|++++|+..
T Consensus 197 --~~~A~~~~~~a~~~~p~~----------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 197 --FLEVKELFLAAVRLDPTS----------------------------------I-DPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp --HHHHHHHHHHHHHHSTTS----------------------------------C-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCcCc----------------------------------c-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444333330 0 234445555555555555555555
Q ss_pred HHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 002286 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (942)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 407 (942)
|.+++. ..|....++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.+.|
T Consensus 240 ~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 240 FTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555554 23444555666666666666666666666666666666666666666666666666666666666666655
Q ss_pred Cc-----------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002286 408 RD-----------AQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (942)
Q Consensus 408 ~~-----------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (942)
++ ..+|..++.++ ..|++++|..++.+++..++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 55 55666666666 66666666666555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=246.60 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..++..++..+...|+.. +|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFK-----------MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 346677888888888766 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 163 ~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
.++..+|.++...| ++++|+..|++++..+|.. ..++..+|.++...|++++|+..|+++++..|++..++..+|.++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999 9999999999999999998 777999999999999999999999999999999999999999999
Q ss_pred HhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchhHHHHHHHHHH
Q 002286 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSY 315 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~la~~~ 315 (942)
...|+ +++|+..+++++..+|.++.++..+|.++...|++++|...+++++...+. .|..+.++..+|.++
T Consensus 170 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999975321 145568999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 002286 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY-VQLGQIE 393 (942)
Q Consensus 316 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~ 393 (942)
...|++++|+.+|+++++ ..|....++..+|.++...|++++|+.+|+++++.+|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 45677889999999999999999999999999999999999999999998 5666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=255.03 Aligned_cols=430 Identities=12% Similarity=0.041 Sum_probs=329.2
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 002286 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (942)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 196 (942)
|+++++.+|.+..+|..++.. ...|++++|...|++++...|.++.+|..++..+...|++++|..+|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~- 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H- 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-
Confidence 677889999999999999984 7899999999999999999999999999999999999999999999999999999 4
Q ss_pred hhhHhhHHH-HHHHcCCHHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHh---------hccHHhHHHHHHHHHH
Q 002286 197 GAIRLGIGL-CRYKLGQLGKARQ----AFQRALQL---DPENVEALVALAVMDLQ---------ANEAAGIRKGMEKMQR 259 (942)
Q Consensus 197 ~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~---------~~~~~~~~~A~~~~~~ 259 (942)
..+|+.++. .....|+++.|+. .|++++.. +|.+...|...+.+... .|+ ++.|...|++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHH
Confidence 456777774 4456788887765 88888764 56778888888887665 455 9999999999
Q ss_pred HHHhCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHH------H
Q 002286 260 AFEIYPYCAM--ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA------S 331 (942)
Q Consensus 260 ~~~~~p~~~~--~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------a 331 (942)
++. .|.... .+...+......|. ..+..+ +....+++..|...|.. .
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-----------------------l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINI-HLAKKM-----------------------IEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCH-HHHHHH-----------------------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhch-hHHHHH-----------------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999 575532 22222221111110 000000 01123445555555544 2
Q ss_pred HHhc-C-CCCCc-------hhhhhcHHHHHHHc----CCh----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------
Q 002286 332 VKEI-N-KPHEF-------IFPYYGLGQVQLKL----GDF----RSALTNFEKVLEIYPDNCETLKALGHIYVQ------ 388 (942)
Q Consensus 332 ~~~~-~-~~~~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 388 (942)
++.. . .+|.. ...|.......... ++. ..++..|++++..+|.++.+|..+|..+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 2210 0 12221 23333333222221 232 478899999999999999999999999886
Q ss_pred -cCCHH-------HHHHHHHHHHH-hCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 002286 389 -LGQIE-------KAQELLRKAAK-IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVI 457 (942)
Q Consensus 389 -~g~~~-------~A~~~~~~~l~-~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~l~~~ 457 (942)
.|+++ +|+..|+++++ ..|++..+|..++.++ ..|++++|...|++++...|. ++ .+|..++.+
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~ 365 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKF 365 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHH
Confidence 68876 89999999997 7899999999999999 899999999999999885332 33 588899999
Q ss_pred HHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHH-Hh
Q 002286 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LE 536 (942)
Q Consensus 458 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~ 536 (942)
+.+.|++++|...|.+++. .+|.....+...+.+ +.
T Consensus 366 ~~~~~~~~~A~~~~~~Al~-------------------------------------------~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKARE-------------------------------------------DARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------------------------------------------CTTCCTHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHh-------------------------------------------ccCCchHHHHHHHHHHHH
Confidence 9999999999999999988 334445555555554 34
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh----HHHHhhhhhccccchHHH
Q 002286 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKA 612 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A 612 (942)
..|++++|..+|+++++.+|+++.++..++.++...|+.++|..+|++++...|.++. +|..++.+....|+.+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6899999999999999999999999999999999999999999999999998877765 788888888889999999
Q ss_pred HHHHHHhhccCCC
Q 002286 613 KETFRAASDATDG 625 (942)
Q Consensus 613 ~~~~~~~~~~~~~ 625 (942)
..++.++++..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999987763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=254.22 Aligned_cols=395 Identities=11% Similarity=0.054 Sum_probs=305.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 151 ~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
|+++++.+|.+..+|..++.. ...|++++|...|++++...|.+ ..+|..+|..+...|++++|+..|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~-~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS-GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 678899999999999999984 78899999999999999999999 78899999999999999999999999999999 6
Q ss_pred HHHHHHHHHHH-HhhccHHhHHHH----HHHHHHHHHh---CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 002286 231 VEALVALAVMD-LQANEAAGIRKG----MEKMQRAFEI---YPYCAMALNYLANHFFF---------TGQHFLVEQLTET 293 (942)
Q Consensus 231 ~~~~~~l~~~~-~~~~~~~~~~~A----~~~~~~~~~~---~p~~~~~~~~la~~~~~---------~g~~~~a~~~~~~ 293 (942)
...|..++... ...|+ +..| ...|++++.. +|.+..+|...+..... .|+++.|..+|++
T Consensus 79 ~~lw~~~~~~~~~~~~~---~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGK---LPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTT---STTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 88888888544 34455 4444 3477777764 56677888888777655 6888889999999
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHH------
Q 002286 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK------ 367 (942)
Q Consensus 294 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------ 367 (942)
++..+ .. .....|...+......|. ..+ ...+ ....+++..|...+..
T Consensus 156 al~~P-~~-~~~~~~~~~~~~e~~~~~-~~~----~~~l-------------------~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 156 GCVNP-MI-NIEQLWRDYNKYEEGINI-HLA----KKMI-------------------EDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp HTTSC-CT-THHHHHHHHHHHHHHHCH-HHH----HHHH-------------------HTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhch-hh-hHHHHHHHHHHHHHhhch-hHH----HHHH-------------------HHhhHHHHHHHHHHHHHHHHHH
Confidence 88732 11 111222222221111111 000 0111 1123556677666655
Q ss_pred HHHh-----CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCcCcHHHHHHHHHHH-h-----
Q 002286 368 VLEI-----YPDN-------CETLKALGHIYVQL----GQI----EKAQELLRKAAKIDPRDAQAFIDLGELL-I----- 421 (942)
Q Consensus 368 ~l~~-----~p~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~-~----- 421 (942)
.++. .|.. ...|.......... ++. ..++..|++++..+|.++.+|..++.++ .
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhh
Confidence 3332 3332 24454444333221 232 4788999999999999999999999998 5
Q ss_pred --cCCHh-------HHHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccch
Q 002286 422 --SSDTG-------AALDAFKTART-LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491 (942)
Q Consensus 422 --~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 491 (942)
.|+++ +|+..|++++. ..|. +..++..++.++...|++++|...|++++.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-----~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--------------- 349 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKK-----NMLLYFAYADYEESRMKYEKVHSIYNRLLA--------------- 349 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---------------
Confidence 69987 89999999986 4333 689999999999999999999999999998
Q ss_pred hhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcch-hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H
Q 002286 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI-A 569 (942)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~ 569 (942)
.+|.++ .++..++.++...|++++|..+|.++++..|.....+...+.+ +
T Consensus 350 ----------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 350 ----------------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp ----------------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred ----------------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 455554 5899999999999999999999999999999887777777666 3
Q ss_pred HHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 570 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
...|++++|..+|+++++.+|+++.+|..++.++...|+.+.|...|++++...|.
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999987653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=250.42 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=245.3
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 137 LLLAKGEVEQASS-AFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 137 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
++...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCc
Confidence 6667788888888 8888877777663 457788888888888888888888888888887 667788888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~ 291 (942)
++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..+++++...|.+...+..++....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhh------------
Confidence 88888888888888888888888888888888888 888888888888888877655433322100
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhhhcHHHHHHHcCChHHHHHHHHHHH
Q 002286 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (942)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (942)
.......+..++.++ ..|++++|+..|.+++.. .|. ...++..+|.++...|++++|+..|++++
T Consensus 178 ---------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 178 ---------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000112233556666 889999999999999984 445 67889999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC----
Q 002286 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE---- 444 (942)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~---- 444 (942)
..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++...|....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999887522
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 445 --EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 445 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+....++..+|.++...|++++|...+.+++.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 22378999999999999999999999987776
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=241.91 Aligned_cols=277 Identities=14% Similarity=0.095 Sum_probs=189.9
Q ss_pred HHHHHHHhhcCCCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 114 TQYYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 114 ~~~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
...+.......|.++ ..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555544 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHhhccHHhHHHHHHHHHH
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------AVMDLQANEAAGIRKGMEKMQR 259 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~~~~A~~~~~~ 259 (942)
..+|++ ..++..+|.++...|++++|+..|+++++.+|++..++..+ |.++...|+ +++|+..+++
T Consensus 127 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV---LEGVKELYLE 202 (365)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH---HHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh---HHHHHHHHHH
Confidence 999998 78899999999999999999999999999999876666554 778888877 8889999988
Q ss_pred HHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 002286 260 AFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (942)
Q Consensus 260 ~~~~~p~--~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 337 (942)
++..+|. ++.++..+|.++...|++++|+..+++++..
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------------- 242 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------------------------------------- 242 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------
Confidence 8888887 6655555555555555555555555554443
Q ss_pred CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------
Q 002286 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--------- 408 (942)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------- 408 (942)
.|....++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.+.|+
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 33444445555555555555555555555555555555555555555555555555555555555555444
Q ss_pred ---cHHHHHHHHHHH-hcCCHhHHHHHHHH
Q 002286 409 ---DAQAFIDLGELL-ISSDTGAALDAFKT 434 (942)
Q Consensus 409 ---~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (942)
+..+|..++.++ ..|+.+.+.....+
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 234455555555 55555555554444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=242.57 Aligned_cols=294 Identities=19% Similarity=0.191 Sum_probs=236.9
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHH
Q 002286 149 SAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (942)
Q Consensus 149 ~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (942)
..+...+...|.+ ...++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444 3458888999999999999999999999988888 7778889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 002286 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (942)
Q Consensus 225 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 304 (942)
+.+|++..++..+|.++...|+ +++|+..+++++..+|.++.++..++ ..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~ 176 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKK---------------------------GS 176 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCccchHHHhhhc---------------------------cc
Confidence 9999888889999999888888 88899999988888877664443331 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (942)
...+..+|.++...|++++|+.+|.+++.. .|. ...++..+|.++...|++++|+..|+++++..|+++.++..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 245667799999999999999999999984 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC-------CCHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-------VPIEVLNNI 454 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~l 454 (942)
|.++...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+..|++++.+.|..... ....++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999998875332 124789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 002286 455 GVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+.++...|+.+.+.....+.+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999888877554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-25 Score=232.88 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=200.7
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+ ..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL--------------AV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
+...|++++|+..|++++..+|.+...+..+ +. ++...|+ +++|+..+++++..+|.++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~-- 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECRTLLHAALEMNPNDAQ-- 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH---HHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHHHHHHHHHhhCCCCHH--
Confidence 9999999999999999999999987776665 33 3444555 66777777776666665554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
++..+|.++...|++++|+..+.+++. ..|....++..+|.+
T Consensus 174 -----------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 174 -----------------------------------LHASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGAT 215 (327)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 444445555555555555555555554 234455556666666
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------------cHHHHHHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------------DAQAFIDLGEL 419 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~ 419 (942)
+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+ ++.++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666666666666666666667777777777777777777777666666 56666666666
Q ss_pred H-hcCCHhHHHHHHHHHHHHHHH
Q 002286 420 L-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 420 ~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
+ ..|++++|...+++++...+.
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 6 666666666666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=237.83 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=230.4
Q ss_pred HhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchh
Q 002286 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~ 198 (942)
++..+|.++.++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++ ..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999999 88
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
+|+.+|.++..+|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|++++.++|.+..+++.+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 99999999999999999997777777666
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC-
Q 002286 279 FF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG- 356 (942)
Q Consensus 279 ~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g- 356 (942)
.. .|.+++|+ .+.++.+|.+++. ..|.+..+|+.+|.++...|
T Consensus 245 ~~l~~~~~eA~--------------------------------~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 245 SNTTGYNDRAV--------------------------------LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTTCSCSHHH--------------------------------HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCG
T ss_pred HHhcCcchHHH--------------------------------HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCc
Confidence 65 33323221 2233577777776 45777888888888888877
Q ss_pred -ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCcCcHHHHHHHHHHH
Q 002286 357 -DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKA-AKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 357 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~ 420 (942)
++++|+..+.++ +.+|+++.++..+|.+|...| .+++|+.+|+++ ++++|.....|..++..+
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 688999999888 888999999999999999874 258999999999 899999999999888877
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=235.03 Aligned_cols=258 Identities=9% Similarity=-0.018 Sum_probs=240.3
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhhcCCChhHH
Q 002286 518 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNAL 596 (942)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~ 596 (942)
+...|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|+++.+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 346788899999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (942)
..+|.++...|++++|+..|++++...|. +..++..+|.+ +... |++++|+..|++++..+|++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999988 88899999999 9988 9999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCchHH-----HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhCCCC
Q 002286 677 AANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 677 a~~~la~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~ 748 (942)
+++.+|.++.. .|.+++| +..|.+++...| +++.+|+++|.++...| ++++|++.++.+ +. .+.
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~ 307 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHS 307 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCC
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCC
Confidence 99999999999 6666888 599999999998 88999999999999988 699999999887 54 566
Q ss_pred CHHHHHHHHHHHHHcc--------c-HHHHHHHHHHH-HHhCCCChhhHhhHHHHHHHH
Q 002286 749 DAQILLYLARTHYEAE--------Q-WQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 749 ~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 797 (942)
++.++..+|.+|...| + +++|+++|+++ ++++|.....|.+++.++..+
T Consensus 308 ~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 308 SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 7999999999999985 3 58999999999 999999999999998876654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=231.12 Aligned_cols=273 Identities=13% Similarity=0.084 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..++.+|..+...|++++|+..|++++. ..|....++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~ 58 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEAW 58 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHHH
Confidence 4566778888888888888888888877 445677778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHh---------
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML--------- 599 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l--------- 599 (942)
..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888877777666
Q ss_pred -----hh-hhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC
Q 002286 600 -----GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (942)
Q Consensus 600 -----~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (942)
+. ++...|++++|+..+++++...|. +..++..+|.+ |... |++++|+..|++++..+|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~~ 204 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRPD 204 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCCC
Confidence 55 567777778888888877777666 56667777777 7776 7778888888888877777
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC-----
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----- 748 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 748 (942)
++.++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|++++...|...
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 777777788888878888888888888777776 5677777788888888888888888887777754411
Q ss_pred -----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 749 -----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 749 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
++.++..+|.++...|++++|...+++++...|++
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 35677777788888888888777777777666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-20 Score=215.02 Aligned_cols=460 Identities=12% Similarity=0.081 Sum_probs=321.1
Q ss_pred ccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHH
Q 002286 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (942)
Q Consensus 36 ~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~ 115 (942)
+..+++---..+.+|...|.+.+|+.+|++++.. +. .|+++ .....+..++.+....++.. +.+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s-~fs~n--~~LqnlLi~tAIkaD~~Rv~-----------eyI~ 1045 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NS-VFSEH--RNLQNLLILTAIKADRTRVM-----------EYIN 1045 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CC-ccccc--HHHHHHHHHHHHHhChhhHH-----------HHHH
Confidence 4455555567788899999999999999999833 32 24443 22333333344433232222 3443
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.++..+ .-..|.++...|.+++|..+|+++- .+..+ +...+...|++++|+++++++ +.
T Consensus 1046 kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~ 1104 (1630)
T 1xi4_A 1046 RLDNYD---------APDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NE 1104 (1630)
T ss_pred Hhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CC
Confidence 333222 2238999999999999999999972 11111 222233788999999999876 33
Q ss_pred chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002286 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (942)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 275 (942)
+.+|+.+|.++...|++++|+..|.++ +++..+..++.++...|+ +++|+++|..+.+..++. .+...+|
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk---yEEAIeyL~mArk~~~e~-~Idt~La 1174 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARES-YVETELI 1174 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcccc-cccHHHH
Confidence 678999999999999999999999875 788999999999999999 999999999999887443 2334588
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHc
Q 002286 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (942)
Q Consensus 276 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~ 355 (942)
.+|.+.++++....+. . .+ +...+..+|..+...|+|++|..+|.++- .|..+|.++.+.
T Consensus 1175 faYAKl~rleele~fI----~----~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHL 1234 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHh
Confidence 8899998888544332 1 12 23566789999999999999999998863 488899999999
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHH
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (942)
|++++|++.++++ .+..+|...+.++...|++..|..+... +..+ ++.+..++..| ..|.+++|+.+++.
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988 5568999999999999999999988774 4334 44555788888 99999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhc
Q 002286 435 ARTLLKKAGEEVPIEVLNNIGVIHFE--KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (942)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (942)
++.+.+. ...++..+|.++.+ .++..++++.|...+...+..
T Consensus 1306 aL~Lera-----H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~------------------------------- 1349 (1630)
T 1xi4_A 1306 ALGLERA-----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL------------------------------- 1349 (1630)
T ss_pred HhccChh-----HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh-------------------------------
Confidence 9876544 46777777777664 567777888887766532100
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHH------------hCCCcHHHHHHHHHHHHHcCChhHHHH
Q 002286 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIE 580 (942)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------~~p~~~~~~~~l~~~~~~~~~~~~A~~ 580 (942)
........|..+..+|.+-|+++.|....-.... ..+.+++.+++.+..|. +....++.
T Consensus 1350 -------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~ln 1420 (1630)
T 1xi4_A 1350 -------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLN 1420 (1630)
T ss_pred -------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHH
Confidence 0114667788888899999999998854433221 24556777777766666 44455565
Q ss_pred HHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHh
Q 002286 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 581 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
.+..++.-.-+... ....+.+.|...-+..++..+
T Consensus 1421 dLl~~l~~rlD~~R----~V~l~~~~~~l~lik~yl~~v 1455 (1630)
T 1xi4_A 1421 DLLMVLSPRLDHTR----AVNYFSKVKQLPLVKPYLRSV 1455 (1630)
T ss_pred HHHHHhhhcCChHH----HHHHHHHcCChHHhHHHHHHH
Confidence 55555532222221 222334445555555554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-20 Score=211.61 Aligned_cols=382 Identities=14% Similarity=0.112 Sum_probs=279.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----N--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 200 (942)
+|+-.-..+..|...|.+.+|++.|++++ ..|+ + ...++.++.+....++..+.+.-+...+ .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d----------~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD----------A 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc----------H
Confidence 44555667788889999999999999998 4454 3 3333333333333334333333333211 1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 280 (942)
-.+|.++..+|.+++|...|+++- .+..+ +..++...++ +++|++.++++ +.+.+|..+|.++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~n---ldrAiE~Aerv-----n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGN---LDRAYEFAERC-----NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhh---HHHHHHHHHhc-----CCHHHHHHHHHHHHh
Confidence 238888999999999999999862 12222 2222335555 88888888755 668899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH
Q 002286 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (942)
.|++++|+..|.++ .++..+..+|.++...|++++|+++|..+.+..+ +... ...+|.+|.+.+++++
T Consensus 1118 ~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~I--dt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYV--ETELIFALAKTNRLAE 1185 (1630)
T ss_pred CCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccc--cHHHHHHHHhhcCHHH
Confidence 99999999998774 4568888899999999999999999998886321 1112 2248888888888874
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002286 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (942)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (942)
++.| + ..|+ ...+..+|..+...|++++|+.+|.++ ..|..++.++ ..|+++.|++.++++.
T Consensus 1186 -le~f---I-~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1186 -LEEF---I-NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred -HHHH---H-hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 4444 2 2343 455667999999999999999999885 4788888888 8899999999888872
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCC
Q 002286 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (942)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (942)
+..+|...+.++...|++..|..+......
T Consensus 1249 -------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv------------------------------------------- 1278 (1630)
T 1xi4_A 1249 -------STRTWKEVCFACVDGKEFRLAQMCGLHIVV------------------------------------------- 1278 (1630)
T ss_pred -------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------------------------------------------
Confidence 468888888889899999888887765322
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCChhHHHHHHHHHHhhcC-----CC
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNG-----KY 592 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~l~~~p-----~~ 592 (942)
.+..+..++..|...|.+++|+.+++.++..+|.+...+..++.++.+ -++..+++++|...+.+.| .+
T Consensus 1279 ----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1279 ----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHH
Confidence 445566788888999999999999999999888888888777777665 4567778888887777666 67
Q ss_pred hhHHHHhhhhhccccchHHHHHHHH
Q 002286 593 PNALSMLGDLELKNDDWVKAKETFR 617 (942)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (942)
+..|..+..+|.+.|+++.|....-
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7788888889999999998884433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=230.83 Aligned_cols=386 Identities=12% Similarity=0.085 Sum_probs=272.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCCh---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
..+|..+...|++++|+.+|.++.+. ..+.+++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC-------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45788899999999999999999862 4567889999999999998 9999999999875 77889999997
Q ss_pred HHHcC-----CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002286 386 YVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (942)
Q Consensus 386 ~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 459 (942)
+...+ ++++|+.+|++++... ++.+++.+|.+| ..+...++...++......+.. .+..++.+|.++.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 76665 8899999999999854 455889999999 6665554444444444433332 3678889999999
Q ss_pred HcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcC
Q 002286 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (942)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (942)
..+.++++.......... ....++.+++.+|.+|...|
T Consensus 153 ~~~~~~~~~~~a~~~~~~------------------------------------------a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKA------------------------------------------ALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHTCGGGGHHHHHHHHHH------------------------------------------HTTTCTTHHHHHHHHHHHTT
T ss_pred cCCCcccCHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHHcC
Confidence 998665555543333221 01124458999999999999
Q ss_pred ---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CChhHHHHHHHHHHhhcCCChhHHHHhhhh-h--ccccch
Q 002286 540 ---DTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDW 609 (942)
Q Consensus 540 ---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~g~~ 609 (942)
++++|+.+|+++....|.....++.+|.++... +++++|+.+|+++. |.++.+++.+|.+ + ...+++
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 999999999999999998888889999998765 78999999999987 8899999999998 4 567889
Q ss_pred HHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--
Q 002286 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-- 687 (942)
Q Consensus 610 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-- 687 (942)
++|+..|+++.... +..+.+.+|.+ |....... .++++|+.+|+++. |+++.+.+.+|.+|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y~~G~g~~--------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKL-YYEGKWVP--------ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCSSSC--------CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH-HHcCCCCC--------CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 99999999988764 66778888888 76321000 38899999999988 8889999999988876
Q ss_pred --cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 002286 688 --KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (942)
Q Consensus 688 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~ 761 (942)
..++++|+.+|+++.+. .++.+.+++|.+|.. ..++.+|+.+|+.+... .++.+...++.+..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN-------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEA 401 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT-------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34888999999988774 357888899998875 35888999999888875 23556666666543
Q ss_pred H--cccHHHHHHHHHHHHHh
Q 002286 762 E--AEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 762 ~--~g~~~~A~~~~~~al~~ 779 (942)
. .++..+|...+++....
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHh
Confidence 3 33555666666655544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=215.39 Aligned_cols=252 Identities=13% Similarity=0.088 Sum_probs=175.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC---chhhHhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGI 203 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~l 203 (942)
++..++..|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ...++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567888999999999999999999999999999988999999999999999999999999998 4433 23347889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|+ +++|+..+++++..+|.++.++..+|...+..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988899999999998888 8899999988888888888777777744444446
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC-----chhhhhcHHHHHHHc
Q 002286 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD---YEKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKL 355 (942)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~-----~~~~~~~la~~~~~~ 355 (942)
+++|+..+++++... |....+++.+|.++...|+ +++|+..|+++++.....+. ...++..+|.++...
T Consensus 158 ~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 666666666665543 3334555555555555555 55555555555543321122 113344444444444
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002286 356 GDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (942)
|++++|+.+|+++++.+|+++.++..++.+
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 455555555554444444444444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-23 Score=210.64 Aligned_cols=240 Identities=12% Similarity=0.026 Sum_probs=225.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC-------hhHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNAL 596 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~ 596 (942)
.+..+..+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+.++.+++...|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56789999999999999999999999999999 889999999999999999999999999999999877 6899
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (942)
..+|.++...|++++|+..|++++...|. +.+ +... |++++|+..+++++..+|.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchHH
Confidence 99999999999999999999999998775 344 6667 9999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 756 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 756 (942)
++..+|.++...|++++|+..|+++++..| .++.++.++|.++...|++++|+..|++++.. .+.++.++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l 213 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHH
Confidence 999999999999999999999999999997 78999999999999999999999999999998 56679999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhC------CCChhhHhhHHHH
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 793 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 793 (942)
|.++...|++++|+..++++++++ |++..++..++.+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999 8888877777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=214.84 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=225.3
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhH----HHHh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA----LSML 599 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~----~~~l 599 (942)
++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++. .|.++.. +..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999 5555554 8999
Q ss_pred hhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002286 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (942)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (942)
|.++...|++++|+..|++++...|. +..++..+|.+ |... |++++|+..|++++..+|.++.++.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSY-FYNK------------GNFPLAIQYMEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH-HHHT------------TCHHHHHHHHGGGCCSSCCCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHH-HHHc------------cCHHHHHHHHHHHhhcCCCcHHHHH
Confidence 99999999999999999999999887 67788999999 9998 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC---HHHHHHHHHHHHhhhCCCCC------H
Q 002286 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTD------A 750 (942)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~------~ 750 (942)
.+|......+++++|+..|+++++..| .++.+++.+|.++...|+ +++|+..|++++......++ .
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 999444455699999999999999998 779999999999999999 99999999999998633232 4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.++..+|.+|...|++++|+.+|++++.++|+++.++-.++.+
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 7889999999999999999999999999999999988777665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=200.39 Aligned_cols=200 Identities=18% Similarity=0.112 Sum_probs=160.3
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999998 77788999
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 205 LCRYKL-----------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 205 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
.++... |++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++++++ +++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999 899999999999999999999999999999988888 888999999998888 88888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+..|+++-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888777654 5556777777777777777777777776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=206.09 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=172.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhhHh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~ 201 (942)
+..+..+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|... ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4567778888888888888888888888887 7788888888888888888888888888888776652 46677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.++...|++++|+..|++++..+|. +.++...|+ +++|+..+++++..+|.++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~---~~~a~~~~~~~~~~~~~~~------------- 139 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN---AEKELKKAEAEAYVNPEKA------------- 139 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH---HHHHHHHHHHHHHCCHHHH-------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH---HHHHHHHHHHHHHcCcchH-------------
Confidence 7888888888888888888888887776 334445555 6777777777666555444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
.++..+|.++...|++++|+..|.+++. ..|....++..+|.++...|++++|
T Consensus 140 ------------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 140 ------------------------EEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHHH
Confidence 4555566666666666666666666665 3345556677777777777777777
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHHHH
Q 002286 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGE 418 (942)
Q Consensus 362 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~ 418 (942)
+..+++++..+|+++.++..+|.++...|++++|+..++++++++ |++..++..++.
T Consensus 193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776 666666555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=223.55 Aligned_cols=378 Identities=14% Similarity=0.119 Sum_probs=159.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+|..++..|++++|+..|+++... .++.+++.+|.++...|++ ++|+.+|++++.. + +..++.+|.++...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-PRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhC
Confidence 455555555555555555555443 2444555555555555555 5555555555543 1 23344555544443
Q ss_pred C-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 211 G-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 211 g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
| ++++|+.+|+++++. +++.+++.||.+|...+....-.++...+.++... .++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~----------------- 141 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYP----------------- 141 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCT-----------------
T ss_pred CCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCH-----------------
Confidence 3 445555555555542 22335555555555443311112222223222211 123
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC---ChHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG---DFRSAL 362 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~ 362 (942)
.+++.+|.+|...+.++++........+... ...+.+++.+|.+|...| ++++|+
T Consensus 142 --------------------~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 142 --------------------EAGLAQVLLYRTQGTYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp --------------------THHHHHHHHHHHHTCGGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 3444444444444422222222111111100 111124455555555555 555555
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-H---hcCCHhHHHHHHHH
Q 002286 363 TNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKIDPRDAQAFIDLGEL-L---ISSDTGAALDAFKT 434 (942)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~---~~~~~~~A~~~~~~ 434 (942)
.+|+++....|.....++.+|.+|... +++++|+.+|+++. |+++.+++.+|.+ + ..+++++|+.+|++
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 555555555555555445555555433 45555555555544 4555555555554 2 33455555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhh
Q 002286 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKG-----EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (942)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (942)
+.+. .++..++++|.+|. .| ++++|+.+|+++.
T Consensus 277 Aa~~-------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---------------------------------- 314 (452)
T 3e4b_A 277 GRAA-------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---------------------------------- 314 (452)
T ss_dssp HHHT-------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------------------------------
T ss_pred HHHC-------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------------------------------
Confidence 4431 03445555555554 33 5555555555543
Q ss_pred hhccCCCCCCCCCcchhHHHHHHHHHhh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHH
Q 002286 510 RFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIEL 581 (942)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~ 581 (942)
+.++.+.+++|.+|.. ..++++|..+|+++.+ +.++.+.+.+|.+|.. ..++.+|..+
T Consensus 315 ------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 315 ------------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp ------------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 1244555555555544 3355555555555543 2334555555555543 3355555555
Q ss_pred HHHHHhhcCCChhHHHHhhhhh--ccccchHHHHHHHHHhhc
Q 002286 582 VNEALKVNGKYPNALSMLGDLE--LKNDDWVKAKETFRAASD 621 (942)
Q Consensus 582 ~~~~l~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 621 (942)
|+++....+ +.+...++.+. +..++..+|....++..+
T Consensus 381 ~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 381 SQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555555432 23333333332 223344455555544443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=198.34 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..++..+|.++...|+.. +|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 5 ~~~~~~lg~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 347788999999998877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002286 163 PALLGQACVEFNR-----------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (942)
Q Consensus 163 ~~~~~~a~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (942)
.++..+|.++... |++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++++ +++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 9999999999999 99999999999999999999 7889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (942)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~ 295 (942)
.++..+|.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|...++++-
T Consensus 152 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999988754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=199.30 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=127.6
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 002286 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (942)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 127 (942)
...|..|+|.+|+..++.....+|+ +.......++.+|+.+|+.. .|+..++. .+|.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~-----------~al~~~~~---~~~~~ 64 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYG-----------VVLDEIKP---SSAPE 64 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHH-----------HHHHHSCT---TSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHH-----------HHHHHhcc---cCChh
Confidence 4456678888888888777665542 22445566677787777766 66665544 24545
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
..++..++..+...|++++|+..+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHH
Confidence 566667777777777888888888877765 477788888888888888888888887776 555 566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
++..+|++++|+..|+++++.+|++.......+. ++...|+ +++|+..|++++..+|+++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~---~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK---LQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHSCCCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH---HHHHHHHHHHHHHhCCCcH
Confidence 7777888888888888777777776544333332 2222233 5566666665555555444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=201.70 Aligned_cols=260 Identities=11% Similarity=0.032 Sum_probs=227.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc-hhHHHHHHHH
Q 002286 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-VTVLFNLARL 534 (942)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~ 534 (942)
.-.+..|++..|+..+++... ..|.+ ......++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~-------------------------------------------~~p~~~~e~~~~l~r~ 43 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP-------------------------------------------SSPERDVERDVFLYRA 43 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC-------------------------------------------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-------------------------------------------CCchhhHHHHHHHHHH
Confidence 446778999999999988665 33444 4577888999
Q ss_pred HhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh--cCCChhHHHHhhhhhccccchHHH
Q 002286 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NGKYPNALSMLGDLELKNDDWVKA 612 (942)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A 612 (942)
|...|+++.|+..++. .+|....++..++..+...++.++|+..+++++.. +|+++.++..+|.++...|++++|
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999987765 35667788899999999999999999999999876 599999999999999999999999
Q ss_pred HHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhcCC
Q 002286 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG--VVLAEKGQ 690 (942)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la--~~~~~~g~ 690 (942)
+..|++ | .+..++..+|.+ |... |++++|+..|++++..+|++.......+ .++...|+
T Consensus 121 l~~l~~-----~-~~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 121 LRTLHQ-----G-DSLECMAMTVQI-LLKL------------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHTT-----C-CSHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHhC-----C-CCHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 999997 3 367788889999 9998 9999999999999999999876555444 44456689
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHH-H
Q 002286 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD-C 769 (942)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~-A 769 (942)
+++|+.+|+++++..| +++.+++++|.++..+|++++|+..|++++.. +|.++.++.++|.++...|+..+ +
T Consensus 182 ~~eA~~~~~~~l~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCS-----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999987 78999999999999999999999999999999 67789999999999999999976 5
Q ss_pred HHHHHHHHHhCCCChhhH
Q 002286 770 KKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 770 ~~~~~~al~~~p~~~~~~ 787 (942)
..++++++.++|+++.+.
T Consensus 255 ~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCChHHH
Confidence 789999999999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=219.31 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=228.7
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-----Cc
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CP 196 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----~~ 196 (942)
.....++..|..++..|++++|+..|++++...|.++ .++..+|.+++..|++++|+..+++++...+. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455677788888888888888888888888888774 56778888888888888888888887766311 11
Q ss_pred hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhccHHh----------HHHHHHHHHHH
Q 002286 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAG----------IRKGMEKMQRA 260 (942)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~----------~~~A~~~~~~~ 260 (942)
..++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+... +.++...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 4556777888888888888888888877765532 2244455555544443000 0000000
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 002286 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (942)
Q Consensus 261 ~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 337 (942)
+++|...+.+++.. ....+....++..+|.++...|++++|+.++.+++...+.
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 45555555544432 1223445677888999999999999999999998875433
Q ss_pred CC---CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 002286 338 PH---EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (942)
Q Consensus 338 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 408 (942)
.+ ....++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 22 233478889999999999999999999998876554 678899999999999999999999999987544
Q ss_pred c------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 002286 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQS 470 (942)
Q Consensus 409 ~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 470 (942)
. ..++..+|.++ ..|++++|+.++++++.+.+..+... ...++..+|.++...|+...+...
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 369 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS 369 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence 3 67889999999 99999999999999999987764322 247888999999998877543333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=219.34 Aligned_cols=248 Identities=17% Similarity=0.175 Sum_probs=203.1
Q ss_pred CCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcC
Q 002286 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 408 (942)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~ 408 (942)
+.....++.+|.++...|++++|+.+|++++...|+++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677888888888888888888888888888774 57788888999999999999998888776 345
Q ss_pred cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 002286 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 466 (942)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------------------~~~ 466 (942)
...++..+|.++ ..|++++|+..+++++...+..+... ...++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 577888899998 89999999999999998887754322 14688999999999999 999
Q ss_pred HHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHH
Q 002286 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546 (942)
Q Consensus 467 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 546 (942)
|+.++.+++...... ...+....++.++|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-------------------------------------GDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------------------------cCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999988742210 0234456789999999999999999999
Q ss_pred HHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC------hhHHHHhhhhhccccchHHHHH
Q 002286 547 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 547 ~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 614 (942)
.+++++...|.. ..++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876554 3389999999999999999999999999887665 5678889999999999999999
Q ss_pred HHHHhhccC
Q 002286 615 TFRAASDAT 623 (942)
Q Consensus 615 ~~~~~~~~~ 623 (942)
.|.+++...
T Consensus 289 ~~~~a~~~~ 297 (406)
T 3sf4_A 289 YHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=212.57 Aligned_cols=279 Identities=16% Similarity=0.070 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc---
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--- 524 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (942)
...+..+|..+...|++++|+..|++++... |.+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-------------------------------------------TEDLRT 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------------------------------------------ccChhH
Confidence 4567788999999999999999999999842 333
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh------cCC
Q 002286 525 -VTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGK 591 (942)
Q Consensus 525 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~p~ 591 (942)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++.. .|.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 368899999999999999999999999987 5667889999999999999999999999999998 455
Q ss_pred ChhHHHHhhhhhccccc-----------------hHHHHHHHHHhhccCCC-----CchhHHHhhhhHHHHHHHhhhhcC
Q 002286 592 YPNALSMLGDLELKNDD-----------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRA 649 (942)
Q Consensus 592 ~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~y~~~~~~~~~~ 649 (942)
...++..+|.++...|+ +++|+..+.+++...+. ....++..+|.+ |...
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~------- 236 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT-------
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc-------
Confidence 56689999999999999 99999999998875321 233577788888 8888
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHHHHH
Q 002286 650 PKLEATHLEKAKELYTRVIVQHTSNL------YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAH 722 (942)
Q Consensus 650 ~~~~~~~~~~A~~~~~~~l~~~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~la~ 722 (942)
|++++|+.+|++++...|... .++..+|.++...|++++|+..|++++...+.... .....++.++|.
T Consensus 237 -----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 237 -----GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999876533 38899999999999999999999999998863211 023678999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 723 VYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 723 ~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
++...|++++|+.+|++++...+...+ ..++..+|.+|...|++++|..++++++.+.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998655444 668899999999999999999999999999874
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=194.36 Aligned_cols=248 Identities=14% Similarity=0.114 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH
Q 002286 106 KEEHFILATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A 181 (942)
..+++++|+..|++++... |.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4688899999999999873 456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHH
Q 002286 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 182 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 261 (942)
+..|++++..+|.+ ..++..+|.++...|++++|+..|+++++.+|++......++.. ...|+ +++|+..+.+++
T Consensus 97 ~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHHHH
Confidence 99999999999998 77899999999999999999999999999999998776666544 55577 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 002286 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (942)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 340 (942)
...|.+...+. ++..+...++.++|...+..++...+. .|..+.++..+|.++...|++++|+.+|++++. ..|.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH 247 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCch
Confidence 99888765543 555666666666666666666543211 112245555555555555555555555555554 2222
Q ss_pred chhhhhcHHHHHHHcCChHHHHHHH
Q 002286 341 FIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
. +...+.++...|++++|+..+
T Consensus 248 ~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T---CHHHHHHHHHHHHHHHC----
T ss_pred h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 122244555555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-21 Score=208.99 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=239.1
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhhhcHHHHHHHcCChHHHHHHHHHHHHh------CCC
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPD 374 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~ 374 (942)
+.....++.+|..+...|++++|+.+|++++...+.++. ...++..+|.++...|++++|+.++++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344566778899999999999999999999985322111 1257888999999999999999999999887 466
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHH-hcCC-----------------HhHHHH
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELL-ISSD-----------------TGAALD 430 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~-~~~~-----------------~~~A~~ 430 (942)
...++..+|.+|...|++++|+.++.+++.. .|....++..+|.++ ..|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6788999999999999999999999999988 566778899999999 9999 999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhh
Q 002286 431 AFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (942)
++++++.+.+..+.. ....++..+|.++...|++++|+.+|++++...+...
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------- 257 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--------------------------- 257 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC---------------------------
Confidence 999999887665432 1246889999999999999999999999998543110
Q ss_pred hhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..+....++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+.+++
T Consensus 258 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 258 ----------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp ----------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111234588999999999999999999999999877643 6789999999999999999999999
Q ss_pred HHHhhcCCC------hhHHHHhhhhhccccchHHHHHHHHHhhccCCC
Q 002286 584 EALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 584 ~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (942)
+++...+.. ..++..+|.++...|++++|...|++++...+.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999886543 348889999999999999999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-21 Score=202.65 Aligned_cols=280 Identities=14% Similarity=0.068 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcc---
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK--- 524 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 524 (942)
...+...|..+...|++++|+..|++++... |.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 41 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-------------------------------------------TEDLKT 41 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------------CSCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------------------------------------------cccHHH
Confidence 3456778999999999999999999999842 333
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh---
Q 002286 525 -VTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN--- 594 (942)
Q Consensus 525 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 594 (942)
..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++.+++...|....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 568889999999999999999999999876 4455788999999999999999999999999998765543
Q ss_pred ---HHHHhhhhhccccc--------------------hHHHHHHHHHhhccCCC-----CchhHHHhhhhHHHHHHHhhh
Q 002286 595 ---ALSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNE 646 (942)
Q Consensus 595 ---~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~y~~~~~~~ 646 (942)
++..+|.++...|+ +++|+..+.+++...+. ....++..+|.+ |...
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~---- 196 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL---- 196 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH----
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh----
Confidence 88899999999999 99999999998775311 123467788888 8888
Q ss_pred hcChhHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHH
Q 002286 647 KRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWIN 719 (942)
Q Consensus 647 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~ 719 (942)
|++++|+..|++++...|.. ..++..+|.++...|++++|+..++++++..+.... +..+.++.+
T Consensus 197 --------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 197 --------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 99999999999999876542 338899999999999999999999999998763211 112678899
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 720 la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
+|.++...|++++|+..|++++...+...+ ..++..+|.++...|++++|..++++++.+.+..
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998765544 6688899999999999999999999999988753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=200.99 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHhc---CCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCC
Q 002286 321 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQ 391 (942)
Q Consensus 321 ~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~ 391 (942)
+++|+.++.+++... +..+....++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 666666666655421 1223344567778888888888888888888887764432 3378888888888899
Q ss_pred HHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC
Q 002286 392 IEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 392 ~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 463 (942)
+++|+.++++++...|.. ..++..+|.++ ..|++++|+.++++++...+..+... ...++..+|.++...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999998888776554 67788888888 89999999999999988877654322 23678889999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 002286 464 FESAHQSFKDALGDG 478 (942)
Q Consensus 464 ~~~A~~~~~~al~~~ 478 (942)
+++|..+|++++...
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998853
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=190.22 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=169.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHH
Q 002286 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (942)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~ 118 (942)
....|+.+|..++..|++++|+..|++++...|. ...++..+|.+|...|+.. +|+..|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~-----------~A~~~~~ 81 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---------DAIPYINFANLLSSVNELE-----------RALAFYD 81 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT---------CHHHHHHHHHHHHHTTCHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHcCCHH-----------HHHHHHH
Confidence 4557889999999999999999999988876652 2457778888888888766 8999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
+++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 82 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 160 (243)
T 2q7f_A 82 KALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TE 160 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HH
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999998888 67
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
++..+|.++...|++++|+..|++++..+|++..++..+|.++...|+ +++|+..+++++..+|+++.++..++.+.
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999888 88999999999999999888877766554
Q ss_pred H
Q 002286 279 F 279 (942)
Q Consensus 279 ~ 279 (942)
.
T Consensus 238 ~ 238 (243)
T 2q7f_A 238 H 238 (243)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-20 Score=191.82 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA-------KGEV-------EQASSAFKIVLE-ADRDNVPALLGQACVEFNR 175 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~ 175 (942)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 589999999999999999999999999874 5885 999999999999 6999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hccHHhHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~A~ 254 (942)
|++++|...|++++...|.++..+|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|+ +++|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence 99999999999999999998433899999999999999999999999999999998888877766543 577 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 255 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
..|+++++.+|+++.++..++.++...|++++|..+|++++.....+| .....|..++..+...|+++.|..++.++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998643344 3567888889999999999999999999998
Q ss_pred hcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002286 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (942)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (942)
..|.++.... ++.+ ..-.+++..+|+++..+..+|.
T Consensus 270 ~~p~~~~~~~----~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 270 AFREEYEGKE----TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HTTTTTSSCH----HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred Hcccccccch----HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 6554333321 1111 1111456678888888877763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=188.01 Aligned_cols=215 Identities=19% Similarity=0.218 Sum_probs=131.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.. ..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888888888888888877 6677788888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
+...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..+++++...|.++.++.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~-------------- 163 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ---PKLALPYLQRAVELNENDTEARF-------------- 163 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHCTTCHHHHH--------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccHHHHH--------------
Confidence 8888888888888888888888877777777777777777 77777777777777666553333
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
.+|.++...|++++|+..|.+++. ..|....++..+|.++...|++++|+..++
T Consensus 164 -----------------------~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 164 -----------------------QFGMCLANEGMLDEALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp -----------------------HHHHHHHHHTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred -----------------------HHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 333334444444444444444443 223334445555555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 002286 367 KVLEIYPDNCETLKALGHI 385 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~ 385 (942)
++++.+|++..++..++.+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 5555555555555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=196.67 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=168.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEAD----RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+..+...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.++...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHc
Confidence 334455688999999999999873 4567889999999999999999999999999999998 77889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..+++++..+|+++.....++. ....|++++|...
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChHHHHHHHH-HHHhcCHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999999988755544433 2444666666666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhhhcHHHHHHHcCChHHHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (942)
+.+++...+.. .. ...++..+...++.++|+..+.+++...+. .+....+++.+|.++...|++++|+..|++++
T Consensus 167 ~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKE---QW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCC---ST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcc---hH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66555543222 11 223445555555555555555555431100 00113344444445555555555555555544
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 370 EIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
..+|++... .+.++...|++++|+..+
T Consensus 243 ~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred hCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 444433221 133444444444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-19 Score=180.98 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=155.7
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhh
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAI 199 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~ 199 (942)
+|.++.+++.+|.++...|++++|+..|++++. |.++.+++.+|.++.. .+++++|+.+|+++++.+ + +.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-HHH
Confidence 466777777777777777777777777777776 6667777777777777 777777777777777764 3 556
Q ss_pred HhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 200 RLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 200 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
++.+|.++.. .+++++|+..|+++++.+ ++.++..+|.++.. .++ +++|+..|+++++.. ++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~--- 146 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLN--DG--- 146 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTT--CH---
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcC--cH---
Confidence 6777777777 777777777777777653 66677777777766 666 666777776666543 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
.+++.+|.++.. .+++++|+.+|+++++. ....+++.
T Consensus 147 ----------------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 187 (273)
T 1ouv_A 147 ----------------------------------DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFN 187 (273)
T ss_dssp ----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHH
Confidence 445555555555 66666666666666642 23455666
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 348 LGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 348 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
+|.++.. .+++++|+.+|+++++..| +.++..+|.+|.. .+++++|+.+|+++++..|+++..
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666 6667777777766666544 5666667777766 667777777777777766654443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-19 Score=180.85 Aligned_cols=227 Identities=18% Similarity=0.242 Sum_probs=185.2
Q ss_pred HHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002286 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALL 166 (942)
Q Consensus 91 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~ 166 (942)
.++..+|... ...+++++|+.+|++++. |.++.+++.+|.++.. .|++++|+..|++++..+ ++.+++
T Consensus 7 ~a~~~lg~~~----~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKS----YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp HHHHHHHHHH----HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHH----HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 4556666655 345789999999999998 7889999999999999 999999999999999875 899999
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 167 GQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 167 ~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
.+|.++.. .+++++|+.+|++++..+ + +.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999874 4 6789999999999 999999999999999976 688999999
Q ss_pred HHHHh----hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 002286 239 VMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (942)
Q Consensus 239 ~~~~~----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~ 314 (942)
.++.. .++ +++|+..|+++++.. ++ .+++.+|.+
T Consensus 154 ~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~-------------------------------------~a~~~lg~~ 191 (273)
T 1ouv_A 154 SLYDAGRGTPKD---LKKALASYDKACDLK--DS-------------------------------------PGCFNAGNM 191 (273)
T ss_dssp HHHHHTSSSCCC---HHHHHHHHHHHHHTT--CH-------------------------------------HHHHHHHHH
T ss_pred HHHHcCCCCCCC---HHHHHHHHHHHHHCC--CH-------------------------------------HHHHHHHHH
Confidence 99988 777 899999998887653 33 445556666
Q ss_pred HHh----cCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHH
Q 002286 315 YHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCE 377 (942)
Q Consensus 315 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~ 377 (942)
+.. .+++++|+.+|+++++. ....+++.+|.++.. .+++++|+.+|+++++..|+++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 666 66677777777766652 225566777777777 77777777777777777665443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-17 Score=184.33 Aligned_cols=450 Identities=9% Similarity=-0.046 Sum_probs=327.2
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYKRA 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~ 188 (942)
+-+..|++.+..+|.+...|..++......|.++.+..+|++++...|.....|...+......|+ ++.+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCC--CCchhhHhhHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhc------cHH
Q 002286 189 LQVHP--SCPGAIRLGIGLCRYKLGQL--------GKARQAFQRALQL----DPENVEALVALAVMDLQAN------EAA 248 (942)
Q Consensus 189 l~~~p--~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~------~~~ 248 (942)
+...| .+ ..+|..........++. +.....|++++.. +|.....|..........+ ..+
T Consensus 130 l~~~~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKELGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSSSCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99984 34 45666655555555543 3344788888863 6777778877766554311 112
Q ss_pred hHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHH
Q 002286 249 GIRKGMEKMQRAFEIYPYCA--MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (942)
Q Consensus 249 ~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (942)
.++.+..+|.+++.. |... ..+......-...+.. .+.+.+. ....+|..|..
T Consensus 209 ~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~-----------------------e~~~~y~~Ar~ 263 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHIG-----------------------ELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHHH-----------------------HhhHHHHHHHH
Confidence 377888999999864 4332 2222111111000000 0111100 01123334444
Q ss_pred HHHHHHH---hc----CCC---------C-----CchhhhhcHHHHHHHcCC---------hHHHHHHHHHHHHhCCCcH
Q 002286 327 YYMASVK---EI----NKP---------H-----EFIFPYYGLGQVQLKLGD---------FRSALTNFEKVLEIYPDNC 376 (942)
Q Consensus 327 ~~~~a~~---~~----~~~---------~-----~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~p~~~ 376 (942)
.+..... .+ +.. | ...........+.+...+ .......|++++...|.++
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 4433211 10 000 0 001111112222222222 2345678999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC------CC---
Q 002286 377 ETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG------EE--- 445 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~------~~--- 445 (942)
++|...+..+...|+.++|. .+|++++...|.+...|+.++.+. ..|+++.|...|++++...+... .+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999999999999999997 999999999999999999999999 99999999999999998753110 01
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCC
Q 002286 446 --------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 517 (942)
Q Consensus 446 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (942)
....+|...+.+..+.|+.+.|...|.+|+...
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~--------------------------------------- 464 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK--------------------------------------- 464 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---------------------------------------
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------------------------------------
Confidence 123577888888888999999999999998731
Q ss_pred CCCCCcchhHHHHHHHHHhhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC---Ch
Q 002286 518 VELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK---YP 593 (942)
Q Consensus 518 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~---~~ 593 (942)
++....++...|.+....+ +++.|..+|+.+++..|+++..+...+......|+.+.|..+|++++...|+ ..
T Consensus 465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1223456666677766665 4899999999999999999999989999999999999999999999999883 55
Q ss_pred hHHHHhhhhhccccchHHHHHHHHHhhccCCCCchh
Q 002286 594 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629 (942)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 629 (942)
.+|..+..+....|+.+.+..+.+++....|+.+..
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 688888999999999999999999999999885543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-20 Score=175.16 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..++..||.+|...|+.+ +|+..|+++++.+|+++.+++.+|.++...|++++|+..+.+++...|+++
T Consensus 5 ~~iy~~lG~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFD-----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 446667777777666655 777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
.++..+|.++...++++.|+..+.+++..+|.+ ..++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 777777777777777777777777777777777 6667777777777777777777777777777777777777777777
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..|+ +++|+..|+++++.+|+++
T Consensus 153 ~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred HCCC---HHHHHHHHHHHHhCCccCH
Confidence 7777 7777777777777777553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=201.64 Aligned_cols=238 Identities=12% Similarity=0.015 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcchhhhh---hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 002286 83 IAILNALGVYYTYLGKIETK---QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEAD 158 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~---~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~ 158 (942)
+..+..+...|+..+..... ...-.+.+++|+..+..+....|.++.+++.+|.++...|++ ++|+..|+++++.+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 33444555555554433321 113356688899999999999999999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 229 (942)
|+++.++..+|.++...|++++|+..|++++..+|+ ..++..+|.++... |++++|+..|+++++++|+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 47789999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhh--------ccHHhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002286 230 NVEALVALAVMDLQA--------NEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (942)
Q Consensus 230 ~~~~~~~l~~~~~~~--------~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 298 (942)
+..+|..+|.++... |+ +++|+..|++++.++| .++.++..+|.++...|++++|...+++++...
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999888 77 9999999999999998 788777777777777777777777777766644
Q ss_pred CCCCchhHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (942)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (942)
|....++..++.++...|++++|+..+
T Consensus 289 ---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 289 ---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666666666666544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-19 Score=174.84 Aligned_cols=212 Identities=19% Similarity=0.122 Sum_probs=143.6
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+ +++|+..+++++..+|.++.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV---NDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444 4444444444444444444444445555
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcC
Q 002286 278 FFFT-GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (942)
Q Consensus 278 ~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 356 (942)
+... |++++|...+++++. .+..|....++..+|.++...|++++|+.+|.++++ ..|....++..+|.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcC
Confidence 5555 555555555555554 223455667788888888888888888888888887 44666788888999999999
Q ss_pred ChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 002286 357 DFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (942)
Q Consensus 357 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 416 (942)
++++|+..+++++...| .+..++..++.++...|+.+.|..+++.+...+|+++.+...+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999988 8888888888888999999999999999888899888776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=183.39 Aligned_cols=209 Identities=16% Similarity=0.161 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHH
Q 002286 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 638 (942)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 638 (942)
+.+++.+|.++...|++++|+.++++++..+|.++.++..+|.++...|++++|+..|++++...|. +..++..+|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~- 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF- 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH-
Confidence 4445555555555555555555555555555555555555555555555555555555555555443 34445555555
Q ss_pred HHHHHhhhhcChhHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 002286 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIV--QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (942)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (942)
|... |++++|+.+|++++. .+|.+..++..+|.++...|++++|+..|.++++..| .++.+
T Consensus 115 ~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 177 (252)
T 2ho1_A 115 LYEQ------------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSV 177 (252)
T ss_dssp HHHT------------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CCHHH
T ss_pred HHHH------------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----ccHHH
Confidence 5555 666666666666666 6677777788888888888888888888888888876 67888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 717 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
+..+|.++...|++++|+..|++++.. .+.++.++..++.++...|++++|..++++++..+|+++.++.
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888888887 4456778888888888888888888888888888888876553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-19 Score=180.24 Aligned_cols=211 Identities=16% Similarity=0.106 Sum_probs=142.9
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+ +++|+..+++++..+|.++.++..++.+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME---PKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555 5555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCC
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~ 357 (942)
+...|++++|..++++++. .+..|....++..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCC
Confidence 5555555555555555554 223455567777888888888888888888888887 345667778888888888888
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Q 002286 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415 (942)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 415 (942)
+++|+..+++++...|.+..++..++.++...|++++|..++++++...|+++.+...
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-19 Score=175.27 Aligned_cols=215 Identities=15% Similarity=0.117 Sum_probs=161.6
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHH
Confidence 3567778888888888888888888888888888888888888888888888888888888888888888887 667888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 203 IGLCRYKL-GQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 203 la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
+|.++... |++++|+..|+++++ .+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~------ 152 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFPPAFKE------ 152 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHH------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCchHHHH------
Confidence 88888888 888888888888888 566667888888888888888 888888888888887777655544
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-CchhhhhcHHHHHHHcCCh
Q 002286 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKLGDF 358 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~la~~~~~~g~~ 358 (942)
+|.++...|++++|+..+.+++.. .| .....+..++.++...|++
T Consensus 153 -------------------------------la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 153 -------------------------------LARTKMLAGQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp -------------------------------HHHHHHHHTCHHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCH
T ss_pred -------------------------------HHHHHHHcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcH
Confidence 455555555555555555555542 23 4444555566666666777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHH
Q 002286 359 RSALTNFEKVLEIYPDNCETLKA 381 (942)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~ 381 (942)
+.|..+++.+...+|+++.+...
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 77766666666666766665443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-19 Score=168.99 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=153.5
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+. ..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 777899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
++...++++.|...+.+++..+|.+..++..+|.++...|+ +++|+..|+++++.+|.++.++..+|.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999 999999999999999999988888877777777777
Q ss_pred HHHHHHHHHHhc
Q 002286 286 LVEQLTETALAV 297 (942)
Q Consensus 286 ~a~~~~~~~~~~ 297 (942)
+|+..++++++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777777764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=181.18 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHh-hcCCChhHHHHhhhhhccc
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNL-------QLSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~ 606 (942)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. ++|+++.+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 899999999999 7999999999999999999
Q ss_pred cchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002286 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (942)
Q Consensus 607 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 686 (942)
|++++|...|+++++..|.....++..+|.+ +... |++++|+..|+++++.+|.+..++.+.+.+..
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999998887333478888988 8777 99999999999999999999888877776654
Q ss_pred h-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHc
Q 002286 687 E-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEA 763 (942)
Q Consensus 687 ~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~l~~~~~~~ 763 (942)
. .|++++|+.+|+++++..| .++.+|.++|.++...|++++|+..|++++...+.+ ....++..++..+...
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 3 7999999999999999998 789999999999999999999999999999964222 3578999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCChhhH
Q 002286 764 EQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 764 g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
|+.++|..+++++++.+|+++...
T Consensus 255 g~~~~a~~~~~~a~~~~p~~~~~~ 278 (308)
T 2ond_A 255 GDLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CCHHHHHHHHHHHHHHcccccccc
Confidence 999999999999999999876544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=188.65 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chhhhh
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIFPYY 346 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~ 346 (942)
+|..+...|++++|+..+++++..... .+..+.+++.+|.++...|++++|+.++.+++...+..++ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555555555555555555555543221 2223455555566666666666666666555553322221 223445
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-cCcHHHHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK-----ID-PRDAQAFI 414 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~ 414 (942)
.+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|++++|+.++++++. .+ |..+.++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 55555555555555555555555442211 12444555555555555555555555554 23 44444455
Q ss_pred HHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002286 415 DLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (942)
.+|.++ ..|++++|+.++++++.+.+..+.+.....+..+|.++...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 555555 4555555555555555444433222222223334444444444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=197.73 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=161.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
.+.+++|+..++.+....|.++.+++.+|.++...|+| ++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34578888999999999999999999999999999999 99999999999999999 78899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhh---------ccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 220 FQRALQLDPENVEALVALAVMDLQA---------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
|+++++.+|+ ..++..+|.++... |+ +++|+..|++++..+|+++.++..+|.++...
T Consensus 160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------- 226 (474)
T 4abn_A 160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH---VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL--------- 226 (474)
T ss_dssp HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------
Confidence 9999999999 79999999999998 77 99999999999999998886666665554332
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhhhcHHHHHHHcCChHHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (942)
++..+. ..|++++|+..|++++.. .| ....+++.+|.++...|++++|+..|++
T Consensus 227 -----------------~~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 227 -----------------YFNTGQ---NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp -----------------HHHTTC---CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------HHhhcc---ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000000 003444444444444442 23 4444455555555555555555555555
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (942)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (942)
+++.+|++..++..++.++...|++++|+..+
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555544444433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-19 Score=190.47 Aligned_cols=247 Identities=14% Similarity=0.102 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC-------c
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------N 375 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~ 375 (942)
..++.+|..+...|++++|+.+|.+++..... ++....+++.+|.++...|++++|+.++.++++..+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666999999999999999999999975332 3335678999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC-CCC
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVP 447 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 447 (942)
..++..+|.+|...|++++|+.+|.+++.+.|.. ..++..+|.++ ..|++++|+.++++++.+.+..+. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 5689999999999999999999999999875433 36899999999 999999999999999999887766 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
+.++.++|.++...|++++|+.++++++...+.. .+|.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~~~ 305 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------------GDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------------------------------CCHHHHHH
Confidence 7899999999999999999999999999853211 12233344
Q ss_pred HHHHHHHHhhcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 528 LFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 528 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
+..++.++...|+ +.+|+.++++. ...|....++..+|.++...|++++|..++++++.....
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6779999999999 77777777765 334445678889999999999999999999999887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-15 Score=172.75 Aligned_cols=228 Identities=7% Similarity=-0.040 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHH-HHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhh
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (942)
......|++++...|.+++.|+..+......|+.++|. ..|++++...|.+..+|..++.+....|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567889999999999999999999998899988897 99999999999988888899999999999999999999988
Q ss_pred ccC-----------CCC----------chhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc-CCCCHHHH
Q 002286 621 DAT-----------DGK----------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSNLYAA 678 (942)
Q Consensus 621 ~~~-----------~~~----------~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~a~ 678 (942)
... |.+ ...+++..+++ .... |..+.|..+|.++++. .+.....+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-erR~------------~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRI------------QGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhcCCCChHHH
Confidence 742 211 11223333332 2222 7789999999999988 44445555
Q ss_pred HHHHHHHHhcC-CchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHH
Q 002286 679 NGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (942)
Q Consensus 679 ~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 756 (942)
...|.+..+.+ +++.|..+|+.+++..| .++..|...+......|+.+.|..+|++++...+.... ..++...
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666666655 59999999999999998 78899999999999999999999999999998654333 5677777
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
...-...|+.+.+.++.+++.+..|+++.+.
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 8888889999999999999999999986544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-18 Score=169.86 Aligned_cols=218 Identities=15% Similarity=0.177 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
|.++.+++.+|.+++..|+|++|+..|++++..+| .+ ..+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34456666666666666666666666666666665 44 44555566666666666666666666666666666666666
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHh
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 317 (942)
|.++...|+ +++|+..+++++..+|+++.....++ .++..+|.++..
T Consensus 83 ~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~------------------------------~~~~~~g~~~~~ 129 (228)
T 4i17_A 83 SAAYRDMKN---NQEYIATLTEGIKAVPGNATIEKLYA------------------------------IYYLKEGQKFQQ 129 (228)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHH------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHHH------------------------------HHHHHHhHHHHH
Confidence 666666666 66666667666666666663322221 233444445555
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC--chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002286 318 KGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (942)
Q Consensus 318 ~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (942)
.|++++|+..|.++++ ..|. ...+++.+|.++...| ...++++....+.....+ .+......+.+++|
T Consensus 130 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A 199 (228)
T 4i17_A 130 AGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKA 199 (228)
T ss_dssp TTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHH
Confidence 5555555555555554 3344 4455555555554332 223334444433332222 22223334455666
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 396 QELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 396 ~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
+.+|+++++++|+++.+...++.+.
T Consensus 200 ~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 200 VDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6666666666666666555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=170.42 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM-HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 84 ~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
..+..+|.+|...|+.. +|+..|++++..+| .++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 8 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYA-----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHccCHH-----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 46788899999888877 99999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-------hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEA 233 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~ 233 (942)
.++..+|.++...|++++|+..|++++..+|++ + .++..+|.++...|++++|+..|+++++.+|+ ++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999998 5 56899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 002286 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313 (942)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~ 313 (942)
+..+|.++...|. ..+.++..+.+..+..+ .+......+.+++|+..+++++... |.+..+...++.
T Consensus 156 ~~~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGA--------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHH
Confidence 9999999987765 23444445544443332 2333444556677777777777654 444455555555
Q ss_pred HH
Q 002286 314 SY 315 (942)
Q Consensus 314 ~~ 315 (942)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=174.86 Aligned_cols=218 Identities=20% Similarity=0.239 Sum_probs=155.1
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-- 196 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-- 196 (942)
..+|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.+++..|++++|+..|++++...|+++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567888888999999999999999999999998888888 78888889999999999999999999988888653
Q ss_pred hhhHhhHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 197 GAIRLGIGLCRYK--------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 197 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+.+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~---------------------- 146 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK---------------------- 146 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----------------------
Confidence 4567888888888 7778888888888887777765544333322211111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 348 (942)
....++.+|.+|...|++++|+..|++++...+.++....+++.+
T Consensus 147 -----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 191 (261)
T 3qky_A 147 -----------------------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGA 191 (261)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 113355666666666777777777777666555444455666677
Q ss_pred HHHHHHc----------CChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHH
Q 002286 349 GQVQLKL----------GDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQ 396 (942)
Q Consensus 349 a~~~~~~----------g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~ 396 (942)
|.++... |++++|+..|+++++.+|+++ .+...++.++...++++++.
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7777655 777777777777777777763 45566677776666665443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=197.14 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=162.1
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
..|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++|+..|+++++++|+++.++..+|.++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 002286 283 QHFLVEQLTETALAV 297 (942)
Q Consensus 283 ~~~~a~~~~~~~~~~ 297 (942)
++++|...+++++..
T Consensus 160 ~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 160 DWTDYDERMKKLVSI 174 (723)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999888888887753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=182.96 Aligned_cols=392 Identities=13% Similarity=0.084 Sum_probs=189.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
..|++++|..++++. +++.+|..+|.++...|++++|+..|.++ .+ +..+..++.++...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D-~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD-PSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 445566666666555 22345666666666666666666666442 12 22355555566666666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002286 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~ 299 (942)
++.+.+..++ +.+...++.+|.+.|+ +.++...+. .| +..++..+|..++..|.|++|..+|..+
T Consensus 84 l~~ark~~~~-~~i~~~Li~~Y~Klg~---l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKKARE-SYVETELIFALAKTNR---LAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------C---HHHHTTTTT-----CC-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHhCcc-chhHHHHHHHHHHhCC---HHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 6655553222 4445555566666665 555554442 12 3346777777777777777777777754
Q ss_pred CCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q 002286 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (942)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (942)
..|..+|.++...|++++|++.+.++. .+.+|...+.++...|+++.|..+...+. .+|++ .
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~---l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---L 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH---H
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh---H
Confidence 467888899999999999999998872 45678888888999999999977776533 44444 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002286 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456 (942)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 456 (942)
..++.+|.+.|++++|+.++++++.+++.....+..++.++. .++..+.++.|...+.+.+-........+|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999999999883 34455555555544444331000013567889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHh
Q 002286 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (942)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (942)
+|...++++.|+..........-.. . .|..+. ..+.+..+++.....|.
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~-----------------------~-~f~~~~-------~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKE-----------------------G-QFKDII-------TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCH-----------------------H-HHHHHH-------HHCSSTHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhh-----------------------H-HHHHHH-------hchhHHHHHHHHHHHHH
Confidence 9999999999988665543311000 0 000000 23557788888777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHH
Q 002286 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (942)
+....++..+..++.-.-+. .+...++.+.|+..-...++..+.. .++..+--.+-.+|....+++.=..
T Consensus 340 --~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~lr~ 409 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRT 409 (449)
T ss_dssp --HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44455566666666221111 3445566778888888888866654 3455666677788888888865333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=171.87 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=145.1
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHH
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 596 (942)
..|..+..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|+++.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-- 87 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-- 87 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch--
Confidence 344455555555555555555555555555555555555 555555555555555555555555555555554321
Q ss_pred HHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHH--------HHhhhhcChhHHHHHHHHHHHHHHHHH
Q 002286 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA--------ALRNEKRAPKLEATHLEKAKELYTRVI 668 (942)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (942)
...+++.+|.+ |+. . |++++|+..|++++
T Consensus 88 ------------------------------~~~a~~~lg~~-~~~~~~~~~~~~------------~~~~~A~~~~~~~l 124 (261)
T 3qky_A 88 ------------------------------VPQAEYERAMC-YYKLSPPYELDQ------------TDTRKAIEAFQLFI 124 (261)
T ss_dssp ------------------------------HHHHHHHHHHH-HHHHCCCTTSCC------------HHHHHHHHHHHHHH
T ss_pred ------------------------------hHHHHHHHHHH-HHHhcccccccc------------hhHHHHHHHHHHHH
Confidence 12334445555 444 5 99999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
..+|+++.+...+..+ ..+.. .....++.+|.+|...|++++|+..|+++++.+|.++
T Consensus 125 ~~~p~~~~~~~a~~~~--------------~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 125 DRYPNHELVDDATQKI--------------RELRA--------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHCTTCTTHHHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHCcCchhHHHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 9999987665444322 12211 2345688999999999999999999999999998877
Q ss_pred C-HHHHHHHHHHHHHc----------ccHHHHHHHHHHHHHhCCCChhh---HhhHHHHHHHHHH
Q 002286 749 D-AQILLYLARTHYEA----------EQWQDCKKSLLRAIHLAPSNYTL---RFDAGVAMQKFSA 799 (942)
Q Consensus 749 ~-~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~ 799 (942)
. +.+++.+|.+|... |++++|+..|++++..+|+++.+ ...++.++..+..
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 5 88999999999977 88999999999999999998644 4445555544443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=195.04 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
+...+++.||.+|..+|+.+ +|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~-----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIE-----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56789999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
++.++..+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 99999999999999999999999999999999999 88899999999999999999999999999999999999999999
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+...|+ +++|++.+++++++.|+
T Consensus 155 l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 155 LQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred HHhccc---HHHHHHHHHHHHHhChh
Confidence 999999 99999999999887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=178.33 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=193.7
Q ss_pred hhhcHHHHHHHcCChHHHHHHHHHHHHhC---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------cH
Q 002286 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-------DA 410 (942)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~ 410 (942)
.++.+|..+...|++++|+..|++++... + ....++..+|.+|...|+++.|+.++.+++...+. .+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 46678999999999999999999998763 2 24668899999999999999999999999986432 35
Q ss_pred HHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccc
Q 002286 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (942)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 488 (942)
.++..+|.++ ..|++++|+.++++++.+.+..+... ...++.++|.++...|++++|+.+|++++......
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------- 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------- 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------
Confidence 6788999999 99999999999999999887654332 24688999999999999999999999998732100
Q ss_pred cchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhC-----CCcHHHHH
Q 002286 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-----QDYVDAYL 563 (942)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~ 563 (942)
.+|....+++++|.++...|++++|..++++++... |.....+.
T Consensus 256 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 256 -------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp -------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred -------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234457889999999999999999999999999874 44455667
Q ss_pred HHHHHHHHcCC---hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 564 RLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 564 ~l~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
.++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|...|++++..
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77788888888 77888877762 223444567788999999999999999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=180.81 Aligned_cols=323 Identities=13% Similarity=0.130 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
|++++|..++++. +++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|+|++|+.+++.
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455999999988 34569999999999999999999999764 4667889999999999999999999999
Q ss_pred HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 267 (942)
+.+..|+ +.+...++.+|.++|++.++...+. .| +..+|..+|..+...|. +++|...|.++
T Consensus 87 ark~~~~--~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~---yeeA~~~Y~~a------- 148 (449)
T 1b89_A 87 ARKKARE--SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKM---YDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-----CC-----------------C---TTTHHHHHHHT-------
T ss_pred HHHhCcc--chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCC---HHHHHHHHHHh-------
Confidence 9885444 4667889999999999999988875 24 44699999999999999 99999999976
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
..+..++.++...|++++|...+.++. .+.+|...+.++...|+++.|..+....+ ..|+. ...
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~---l~~ 212 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADE---LEE 212 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHH---HHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhh---HHH
Confidence 478899999999999999999999982 45889999999999999999977665422 23333 345
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCc-----CcHHHHHHHHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--GQIEKAQELLRKAAKIDP-----RDAQAFIDLGELL 420 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~ 420 (942)
++..|.+.|.+++|+.++++++..++.+..++..+|.+|.+- ++..+.++.|...+.+.| .++..|..+..+|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999876 577778888877777777 7788899999999
Q ss_pred -hcCCHhHHHHHHHHHHHH------HHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 421 -ISSDTGAALDAFKTARTL------LKK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 421 -~~~~~~~A~~~~~~a~~~------~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
..++++.|+...-..... +.+ .....+.++++.....|. +....++..+..++.
T Consensus 293 ~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~ 354 (449)
T 1b89_A 293 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS 354 (449)
T ss_dssp HHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG
T ss_pred HhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 999999987654332100 000 001234567776666665 444555666666553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-17 Score=176.46 Aligned_cols=238 Identities=15% Similarity=0.091 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHH
Q 002286 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (942)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (942)
..++..|..+...|++++|+.+|++++...... ...+....++
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------~~~~~~a~~~ 144 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-------------------------------------SDDIEKAEFH 144 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------------------------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-------------------------------------CChHHHHHHH
Confidence 356678889999999999999999998743210 0223466788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC------hhH
Q 002286 529 FNLARLLEQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNA 595 (942)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~ 595 (942)
+.+|.++...|+++.|+..+.+++...+. .+.++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 145 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 224 (378)
T 3q15_A 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999999998876442 25577888888888999999998888888764321 235
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhc-----cCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASD-----ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 670 (942)
+..+|.++...|++++|+..|++++. ..|.. ..++..+|.+ |... |++++|+.+|++++..
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWT-LCKA------------GQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHH
Confidence 66677777777777777777777666 33332 4555666666 6665 6666666666666665
Q ss_pred C-----CCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002286 671 H-----TSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742 (942)
Q Consensus 671 ~-----p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 742 (942)
. |.....+..++.++...|+ +.+|+..+++... .| ....++..+|.+|...|++++|+.+|++++.
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~-----~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HA-----YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 2233344555556666665 5555555555211 11 3445566666666666666666666666665
Q ss_pred h
Q 002286 743 K 743 (942)
Q Consensus 743 ~ 743 (942)
.
T Consensus 365 ~ 365 (378)
T 3q15_A 365 A 365 (378)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-16 Score=157.96 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=179.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----Hhc---CChHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVE----FNR---GRYSDSL 182 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~----~~~---g~~~~A~ 182 (942)
+|+..+++++.++|.+..+|..++.++...| ++++++.+++.++..+|++..+|..++.++ ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 999999999999999999999999999999 666 7999999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc---HHhHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG--KARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM 257 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~~A~~~~ 257 (942)
.++.+++..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+++++..+
T Consensus 131 ~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 131 DILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 9999999999999 788999999999999999 99999999999999999999999999887764 23488999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002286 258 QRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 258 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
.+++..+|.+..+|+.++.++...|.... +..++.+++......+..+.++..++.++...|+.++|+++|..+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999888888877776433 3345554443221123333444444444444444444444444433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=178.63 Aligned_cols=253 Identities=19% Similarity=0.119 Sum_probs=175.3
Q ss_pred CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 002286 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405 (942)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 405 (942)
+|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666653 4445667777777777777777777777777765
Q ss_pred ----CcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 406 ----DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA--GE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 406 ----~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
.|....++..+|.++ ..|++++|+.++++++...... +. +....++..+|.++...|++++|+.+|++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355667777888888 8888888888888888776433 11 113578889999999999999999999999884
Q ss_pred chhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCC
Q 002286 478 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557 (942)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (942)
.... .....|....++..+|.++...|++++|+..+++++...|.
T Consensus 183 ~~~~-----------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 183 YQTK-----------------------------------LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHT-----------------------------------SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------------------------------hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2100 00024567788999999999999999999999999975432
Q ss_pred ---------c------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhcc
Q 002286 558 ---------Y------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (942)
Q Consensus 558 ---------~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (942)
. ...+...+..+...+.+.+|...+..+....|..+.++..+|.++...|++++|...|+++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 2334444555666778888889999999999999999999999999999999999999999887
Q ss_pred CCC
Q 002286 623 TDG 625 (942)
Q Consensus 623 ~~~ 625 (942)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=177.24 Aligned_cols=253 Identities=15% Similarity=0.132 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CC
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NK 337 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~ 337 (942)
..++..+|.++...|++++|..++++++... +..+....++..+|.++...|++++|+.+|.+++... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444321 1234445566666666666666666666666666532 23
Q ss_pred CCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 002286 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405 (942)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 405 (942)
.+....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666552 334556666666666666666666666666665
Q ss_pred ----CcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 406 ----DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 406 ----~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
.|....++..+|.++ ..|++++|+..+++++...+.... ......+.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 455555666666666 666666666666666655443100 00000011
Q ss_pred cchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCC
Q 002286 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (942)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (942)
....+...+..+...+.+.+|...+..+...+|
T Consensus 243 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 243 -----------------------------------------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp -----------------------------------------------HHHHHHHC-------CCSCCCC---------CH
T ss_pred -----------------------------------------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 112222233334444555556666666666666
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 002286 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (942)
Q Consensus 557 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~ 591 (942)
..+.++..+|.++...|++++|+.++++++++.|.
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66677777777777777777777777777766553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-16 Score=158.67 Aligned_cols=241 Identities=10% Similarity=-0.030 Sum_probs=192.9
Q ss_pred HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCCCchhhHhhHHHHH----HHc--
Q 002286 140 AKGEV-EQASSAFKIVLEADRDNVPALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR----YKL-- 210 (942)
Q Consensus 140 ~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~----~~~-- 210 (942)
..|.+ ++|+.++++++..+|++..+|..++.++...| ++++++.++..++..+|++ ..+|+..+.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhccc
Confidence 33444 68999999999999999999999999999999 9999999999999999999 77788899998 777
Q ss_pred -CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 002286 211 -GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (942)
Q Consensus 211 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a 287 (942)
+++++++..+.++++.+|.+..+|...+.+....|. ++ +++..+.+++..+|.+..+|...+.++...+...
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~---~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-- 197 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL---HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-- 197 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC--
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc--
Confidence 789999999999999999999999999999999887 77 9999999999999999988877776665544300
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHH-HHHHHH
Q 002286 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNFE 366 (942)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~ 366 (942)
....+++++.++.+++. .+|.+..+|+.++.++...|+... ...++.
T Consensus 198 -----------------------------~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 198 -----------------------------TDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred -----------------------------hhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 00015666777777766 456677777777777777776444 334555
Q ss_pred HHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHH
Q 002286 367 KVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGE 418 (942)
Q Consensus 367 ~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~ 418 (942)
+++... |.++.++..++.++.+.|+.++|+++|+.+.+ .+|.....|...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 555554 67778888888888888888888888888876 68887777766654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=154.80 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.+++++|+..+.+++..+|.++..++.+|.+|+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 45666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA-FQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 187 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
++++++|++ +.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 90 ~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999 78899999999999999877765 589999999999999999998887775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-16 Score=167.04 Aligned_cols=278 Identities=14% Similarity=0.055 Sum_probs=159.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-----hh
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GA 198 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~ 198 (942)
.++..+|.++...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...|... ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3455667777777777777777777776665442 2455666667777777777777777766654331 12
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
++..+|.++...|++++|+..+++++... |....++..+|.++...|+ +++|...+.+++...|...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-- 169 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ-- 169 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccC--
Confidence 24556666666666666666666666543 1122334445555555555 5555555555555444321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh--hh--h
Q 002286 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF--PY--Y 346 (942)
Q Consensus 271 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~--~ 346 (942)
++....++..+|.++...|++++|..++.+++........... .. .
T Consensus 170 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 170 ------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp ------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 1112345666667777777777777777766653222111111 11 1
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAFIDL 416 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l 416 (942)
.++.++...|++++|...+.+++...|.. ...+..++.++...|++++|...+++++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23344566677777777776666554432 224556667777777777777777766654322 12355666
Q ss_pred HHHH-hcCCHhHHHHHHHHHHHHHHH
Q 002286 417 GELL-ISSDTGAALDAFKTARTLLKK 441 (942)
Q Consensus 417 a~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (942)
+.++ ..|++++|...+++++...+.
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6666 667777777777766666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-16 Score=166.82 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=194.7
Q ss_pred HHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcc-----hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002286 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS-----TWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (942)
Q Consensus 87 ~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 161 (942)
...+.++...|... ...|++++|+..+.+++...|.+.. ++..+|.++...|++++|...+++++...|..
T Consensus 11 ~~~~~~~~~~a~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 11 TMHAEFNALRAQVA----INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 44577777777766 3578899999999999998876543 57788999999999999999999999875533
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC-------CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002286 162 ------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-------CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (942)
Q Consensus 162 ------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (942)
..++..+|.++...|++++|+..+++++...+. ....++..+|.++...|++++|...+++++...|
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 234678999999999999999999999987531 1144567799999999999999999999999987
Q ss_pred CC-----HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 002286 229 EN-----VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (942)
Q Consensus 229 ~~-----~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~ 301 (942)
.. ..++..+|.++...|+ +++|...+++++...+. .+..+..
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------- 215 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGD---LDNARSQLNRLENLLGNGKYHSDWIS---------------------------- 215 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSCCCHHHHH----------------------------
T ss_pred ccCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhccCcchhHHH----------------------------
Confidence 52 4567778888888888 88888888887765322 1111110
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCC------
Q 002286 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------ 374 (942)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------ 374 (942)
......+.++...|++++|..++.+++...+..+. ....+..+|.++...|++++|...+++++...+.
T Consensus 216 ----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 216 ----NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 01112333455556666666666555532111100 1123445666666666666666666666554321
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
...++..+|.++...|++++|...+.+++...
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 12466667777777777777777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=154.65 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
+|.++...|++++|+..+.+++..+|+++.+++.+|.+|+..|+|++|+..|+++++.+|++ +.+++.+|.++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCch
Confidence 67888889999999999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
++|+..|+++++++|+++.++..+|.++...|+ +.+|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 8777765 589999999999998888888877764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-17 Score=166.87 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=177.0
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--G-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
+|..++.++-+.-+.....+ .++.. + ++++|+..|.++ |.++...|+|++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666666666655432222 12232 2 488999998887 55678889999999999999
Q ss_pred HHhCCCC-----chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhh-ccHHhHHHHHHH
Q 002286 189 LQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQA-NEAAGIRKGMEK 256 (942)
Q Consensus 189 l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~~~~A~~~ 256 (942)
+.+.+.. ...++..+|.+|..+|++++|+.+|++++++.|.. ..++..+|.++... |+ +++|+..
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~---~~~A~~~ 140 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDC 140 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC---HHHHHHH
Confidence 8875321 24578889999999999999999999998876542 34566677777664 66 7777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 336 (942)
|++++.+.|... .......++..+|.++...|++++|+.+|++++...+
T Consensus 141 ~~~Al~~~~~~~-------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 141 YELAGEWYAQDQ-------------------------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHTT-------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-------------------------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 777766654321 0011235677888999999999999999999987543
Q ss_pred CCCCc----hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 002286 337 KPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYV--QLGQIEKAQELLRKAAKI 405 (942)
Q Consensus 337 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~~l~~ 405 (942)
..+.. ..+++.+|.++...|++++|+..|++++.++|+... .+..++..+. ..+++++|+..|++++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 33221 125678899999999999999999999998887654 3444555554 457899999999999888
Q ss_pred CcCcHHHHHHHHHHH
Q 002286 406 DPRDAQAFIDLGELL 420 (942)
Q Consensus 406 ~p~~~~~~~~la~~~ 420 (942)
+|....++..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887766665555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=149.71 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002286 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (942)
Q Consensus 82 ~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 161 (942)
...++..+|.+|...|+.. +|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4556777788887777666 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
+.++..+|.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++...|.++.++..+|.++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 8888888888888888888888888888888887 677888888888888888888888888888888888888888888
Q ss_pred HhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
...|+ +++|+..+++++..+|+++
T Consensus 155 ~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred HHcCC---HHHHHHHHHHHHHcCCCch
Confidence 88888 8888888888888877665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-17 Score=186.46 Aligned_cols=200 Identities=11% Similarity=-0.014 Sum_probs=175.8
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL--------EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
..+|+++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56888998888877 88999999999999999 89999999999999999999999999999999999999
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 273 (942)
++ ..+++.+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++ +..|+++++.+|+++.+++.
T Consensus 465 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCchHHHHHH
Confidence 99 78899999999999999999999999999999999999999999999999 999 99999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA-GLYYMASV 332 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~ 332 (942)
+|.++...|++++|+..+++++... |....+++.+|.++...|+.+++ ...+.++.
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTS---RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTS---TTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccC---cccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 9999999999999999999988654 77788999999998876664333 33444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-16 Score=154.74 Aligned_cols=210 Identities=11% Similarity=0.111 Sum_probs=166.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh---HHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---ALS 597 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 597 (942)
.+..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999998876 478999999999999999999999999999999876 788
Q ss_pred HhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 002286 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (942)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (942)
.+|.++...|.. .+. .+..++.. +... |++++|+..|+++++.+|+++.+
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~-~~~~------------~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRS-DRDP------------QQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CC------------HHHHHHHHHHHHHHTTCTTCTTH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchh-hcCc------------HHHHHHHHHHHHHHHHCcCChhH
Confidence 889888766532 111 12234444 4444 99999999999999999998876
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-HHHHHHH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 756 (942)
...+..+ ..+.. ......+.+|.+|...|++.+|+..|+++++.+|+++. +.+++.+
T Consensus 133 ~~a~~~l--------------~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 TDATKRL--------------VFLKD--------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp HHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHH--------------HHHHH--------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 6433221 11111 22345678999999999999999999999999876554 6899999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCChh
Q 002286 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (942)
Q Consensus 757 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 785 (942)
|.++.+.|++++|++.++++....|++..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999997754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=149.74 Aligned_cols=173 Identities=18% Similarity=0.191 Sum_probs=160.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHH
Q 002286 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (942)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~ 118 (942)
....|+.+|..|+..|++++|+..+++++...|. ...++..+|.+|...|+.. +|+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------~A~~~~~ 66 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---------DVDVALHLGIAYVKTGAVD-----------RGTELLE 66 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---------CHHHHHHHHHHHHHTTCHH-----------HHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---------ChHHHHHHHHHHHHcCCHH-----------HHHHHHH
Confidence 3568999999999999999999999999987653 2457888999999888776 9999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
+++..+|.++.++..+|.++...|++++|...|++++...|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 145 (186)
T 3as5_A 67 RSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GK 145 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 78
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
++..+|.++...|++++|...++++++.+|++..
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 8999999999999999999999999999887643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=162.44 Aligned_cols=233 Identities=17% Similarity=0.103 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 002286 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 391 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (942)
++++|+..|.++ +.++ ..|++++|+..|.+++.+.+..+.... ..++.++|.++...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366666666655 3455 677777777777777777665443222 467888999999999999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhc-CCHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (942)
.+|++++...+... .......++.++|.+|... |++++|+..
T Consensus 98 ~~~~~Al~l~~~~g-------------------------------------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 98 DSLENAIQIFTHRG-------------------------------------QFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC-------------------------------------CHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99999988532110 1112356888999999996 999999999
Q ss_pred HHHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh-------HHHHhhhhhccccchHHHHH
Q 002286 548 YRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-------ALSMLGDLELKNDDWVKAKE 614 (942)
Q Consensus 548 ~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~ 614 (942)
|++++...|.. ..++..+|.++...|++++|+.+|++++...|+++. ++..+|.++...|++++|+.
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988754 567899999999999999999999999999988765 56889999999999999999
Q ss_pred HHHHhhccCCCCch----hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002286 615 TFRAASDATDGKDS----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 685 (942)
Q Consensus 615 ~~~~~~~~~~~~~~----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 685 (942)
.|++++...|.... ..+..++.. |... ..+++.+|+..|++++.++|.+...+..+-..+
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~-~~~~----------~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDA-VNEG----------DSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHH-HHTT----------CTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHH-HHcC----------CHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999998876321 122223333 2211 017799999999999999998776666555444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=154.36 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=96.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------------QACVEFNRGRYSDSLEFYKRALQ 190 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~~l~ 190 (942)
++..++..|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999988888 77777777777777777777777
Q ss_pred hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
.+|++ ..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ .....+...+.++
T Consensus 83 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~ 150 (208)
T 3urz_A 83 KAPNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKL 150 (208)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC--
T ss_pred HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 77776 56667777777777777777777777777777777777777776655543 1133444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=153.28 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHH----------------HHHHHHHcchhhhh
Q 002286 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA----------------LGVYYTYLGKIETK 102 (942)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~y~~~g~~~~~ 102 (942)
..+.++..|..++..|++++|+..|++++..+|+ ...++.. +|.+|...|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-- 71 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-- 71 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH--
Confidence 4568999999999999999999999999887662 3344444 666666666555
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--hHH
Q 002286 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YSD 180 (942)
Q Consensus 103 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~~~ 180 (942)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.+++..|+ ...
T Consensus 72 ---------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 72 ---------KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 677777777777777777777777777777777777777777777777777777777776665543 334
Q ss_pred HHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 181 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
+...+.+++. |......++.+|.++...|++++|+..|+++++++|+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4555555542 2222234556666666677777777777777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-16 Score=153.74 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=135.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hhHh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRL 201 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~ 201 (942)
.+..++.+|..++..|++++|+..|++++...|.++ .+++.+|.+++..|++++|+..|+++++.+|+++. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356788889999999999999999999998888763 68888999999999999999999999999888742 3677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 281 (942)
.+|.++...|.. ....+..++..+...|+ +++|+..|+++++.+|+++.+...+..
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~~~a~~a~~~----- 138 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNSQYTTDATKR----- 138 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHH---HHHHHHHHHHHHTTCTTCTTHHHHHHH-----
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHH---HHHHHHHHHHHHHHCcCChhHHHHHHH-----
Confidence 888888776532 11223345555555666 888888888888888887754322111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 282 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
++.+... .....+.+|.++...|++.+|
T Consensus 139 -----------------------------l~~~~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 139 -----------------------------LVFLKDR-----------------------LAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp -----------------------------HHHHHHH-----------------------HHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------------------HHHHHHH-----------------------HHHHHHHHHHHHHHcCcHHHH
Confidence 1111000 001123456666666666677
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 362 LTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 362 ~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
+..|+++++.+|+++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 777776666666654 456667777777777777777776666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=139.45 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=109.2
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
++..++|....++..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++ ..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH
Confidence 34567898889999999999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999999999998888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=182.46 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHh--------hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 002286 107 EEHFILATQYYNKAS--------RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~ 178 (942)
.+++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 466789999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
++|+..|+++++.+|++ ..+++.+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+ +++|+..|+
T Consensus 484 ~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~ 558 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999 7789999999999999999 999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 259 RAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 259 ~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
++++++|++..++..++.++...+.
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999988666
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-14 Score=145.84 Aligned_cols=246 Identities=13% Similarity=0.045 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--h
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~ 178 (942)
++|+..+++++..+|.+..+|..++.++...|. +++++.+++.++..+|++..+|..++.++...|. +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 379999999999999999999999999988776 7899999999999999999999999999999984 8
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-----------
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------- 246 (942)
++++.++.+++..+|.+ ..+|...+.+....|. +++++.++.++++.+|.|..+|..++.+....+.
T Consensus 127 ~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 127 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCC
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999 7889999999999998 6999999999999999999999999998877621
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHH
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (942)
.+.+++++..+.+++..+|++..+|+.+..++... .|
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~------------------------------------~~------- 242 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG------------------------------------SG------- 242 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS------------------------------------SC-------
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc------------------------------------cC-------
Confidence 14489999999999999999998887654443221 01
Q ss_pred HHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHH
Q 002286 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQIEKAQELLRKAA 403 (942)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l 403 (942)
.+.. + -...+.+++++..+.++++..|++...+..++.+.. ..|..++....+.+++
T Consensus 243 -----------~~~~-------~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 243 -----------RCEL-------S--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp -----------GGGC-------C--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred -----------cccc-------c--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0000 0 112334567777777777777777554444443322 2466777888888888
Q ss_pred HhCcCcHHHHHHHHHHH
Q 002286 404 KIDPRDAQAFIDLGELL 420 (942)
Q Consensus 404 ~~~p~~~~~~~~la~~~ 420 (942)
+++|....-|..+..-+
T Consensus 303 ~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 303 AVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHCGGGHHHHHHHHHHH
T ss_pred HhCcchhhHHHHHHHHH
Confidence 88888777776665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-14 Score=143.89 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=196.1
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 139 LAKGEVE-QASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 139 ~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
...|.++ +|+..+..++..+|++..+|..++.++...|. +.+++.++..++..+|.+ ..+|...+.++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-y~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 3456664 89999999999999999999999999988776 789999999999999999 78899999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 002286 208 YKLGQ--LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (942)
Q Consensus 208 ~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 285 (942)
..+|. +++++.++.++++.+|.|..+|...+.+....|.. +++++..+.+++..+|.+..+|..++.++...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~--~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 99994 89999999999999999999999999998888761 488999999999999999988887776654432210
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHH
Q 002286 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (942)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (942)
+. . .... ...+.+++++.++
T Consensus 197 ----------------~~-----------------------------~---~~~~------------~~~~~~~eEle~~ 216 (331)
T 3dss_A 197 ----------------DS-----------------------------G---PQGR------------LPENVLLKELELV 216 (331)
T ss_dssp ------------------------------------------------------C------------CCHHHHHHHHHHH
T ss_pred ----------------cc-----------------------------c---cccc------------cchHHHHHHHHHH
Confidence 00 0 0000 0113467788888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH----hcCCHhHHHH
Q 002286 366 EKVLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDLGELL----ISSDTGAALD 430 (942)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~~~~~A~~ 430 (942)
.+++..+|++..+|+.+..++... +.+++++..+.++++..|++...+..++.+. ..+..++...
T Consensus 217 ~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 217 QNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHH
Confidence 888888888888887555555544 4589999999999999999976666555543 3577889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002286 431 AFKTARTLLKKAGEEVPIEVLNNIGVI 457 (942)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~l~~~ 457 (942)
.+.+.+++.|. ...-|..++..
T Consensus 297 ~l~~l~~~Dp~-----r~~~y~d~~~~ 318 (331)
T 3dss_A 297 YFSTLKAVDPM-----RAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHCGG-----GHHHHHHHHHH
T ss_pred HHHHHHHhCcc-----hhhHHHHHHHH
Confidence 99999988765 34455555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=157.56 Aligned_cols=222 Identities=16% Similarity=0.116 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCC
Q 002286 107 EEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGR 177 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~ 177 (942)
...|.+|+..+.++...+ |..+.++..+|.++...|++++|+..|++++.. +|..+.++..+|.++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 455667777777766544 667889999999999999999999999999977 35567789999999999999
Q ss_pred hHHHHHHHHHHHHh--------CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH
Q 002286 178 YSDSLEFYKRALQV--------HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------DPENVEALVALAVMD 241 (942)
Q Consensus 178 ~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 241 (942)
+++|+..|++++.. +|.. ..++..+|.++...|++++|+..|++++.. .|....++..+|.++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999987 2433 667889999999999999999999999998 666778899999999
Q ss_pred HhhccHHhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCchhHHHH
Q 002286 242 LQANEAAGIRKGMEKMQRAFEI---------YPYCAMALNYLANHFFFTGQHFLVEQLTETAL---AVTNHGPTKSHSYY 309 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~---------~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~ 309 (942)
...|+ +++|+..+++++.. .+.....+..++......+....+..+..... ......|....++.
T Consensus 180 ~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (283)
T 3edt_B 180 LKQGK---YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLR 256 (283)
T ss_dssp HHHTC---HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999 99999999999876 33334445555544444333322222111110 11112234444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 002286 310 NLARSYHSKGDYEKAGLYYMASV 332 (942)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~a~ 332 (942)
.+|.++...|++++|..+|++++
T Consensus 257 ~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 257 SLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-16 Score=135.39 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=114.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhC
Q 002286 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (942)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 745 (942)
++..++|+...++..+|..+.+.|++++|+..|+++++..| .++.+|+++|.++..+|++++|+..|+++++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 44568899999999999999999999999999999999998 88999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHH
Q 002286 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (942)
Q Consensus 746 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 794 (942)
++.++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.|+
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 6778999999999999999999999999999999999999999998864
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-14 Score=144.51 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=160.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNR-G-RYSDSLEFYKRA 188 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g-~~~~A~~~~~~~ 188 (942)
+|+..+++++..+|.+..+|..++.++...| .+++++.+++.++..+|++..+|..++.++... + ++++++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 8999999999999999999999999999999 599999999999999999999999999999998 8 999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc----HHhHHHHHHH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLG--------KARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEK 256 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~~~~~~A~~~ 256 (942)
+..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+++++..
T Consensus 152 L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 152 LLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp TSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999 788999999999999888 99999999999999999999999999988764 2347899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 257 MQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 257 ~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
+.+++..+|++..+|+.+..++...|..
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998888877764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=156.53 Aligned_cols=184 Identities=18% Similarity=0.140 Sum_probs=134.5
Q ss_pred hcCCHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhhhcHH
Q 002286 280 FTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLG 349 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~la 349 (942)
..|++++|+.++++++... ...|..+.++..+|.++...|++++|+.+|.+++... +.++....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555555555421 2345667788888888888888888888888888643 34566677788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHH
Q 002286 350 QVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAF 413 (942)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~ 413 (942)
.++...|++++|+.+|.+++.. +|....++..+|.++...|++++|+.++++++.. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888888877 4566778888999999999999999999988887 67777888
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC
Q 002286 414 IDLGELL-ISSDTGAALDAFKTARTLLKKAG----EEVPIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 463 (942)
..+|.++ ..|++++|+..+++++...+... ......++..++......+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 8888888 88899999999888888766531 11222444445554444333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=144.28 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| + +..+...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHH
Confidence 4666778999999999999999999999999999999999999999999999999999999999999999 6 4545545
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 002286 204 GLCR-YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFF 280 (942)
Q Consensus 204 a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~ 280 (942)
+.+. ...+....|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+. +.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5443 233444568889999999999999999999999999998 999999999999988865 4466677777777
Q ss_pred cCCHHHHHHHHHHHH
Q 002286 281 TGQHFLVEQLTETAL 295 (942)
Q Consensus 281 ~g~~~~a~~~~~~~~ 295 (942)
.|+.++|...|++++
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777666666666655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-16 Score=139.66 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.+-..+.+++.++|+++.+++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|+|++|+..|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 44566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (942)
+|++ +.+++.+|.|+..+|++++|+..|++++++.|+..
T Consensus 100 ~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999 77899999999999999999999999999999864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.4e-16 Score=145.31 Aligned_cols=172 Identities=10% Similarity=0.054 Sum_probs=127.3
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhh
Q 002286 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634 (942)
Q Consensus 555 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 634 (942)
+|...+.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| +......+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHH
Confidence 3444566777788888888888888888888888888888888888888888888888888888877766 33333333
Q ss_pred hhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 002286 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (942)
Q Consensus 635 ~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (942)
+.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|+. .++
T Consensus 80 ~~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~ 144 (176)
T 2r5s_A 80 AKLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDG 144 (176)
T ss_dssp HHHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTT
T ss_pred HHHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChH
Confidence 33311111 223347888888888889888888888998888899999999998888888632 346
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 715 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
.++.++|.++..+|++++|+..|++++..
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 68888888888888888888888888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-15 Score=150.78 Aligned_cols=169 Identities=11% Similarity=-0.031 Sum_probs=154.5
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
-|.++..++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+. .......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHH
Confidence 388889999999999999999999999999999999999999999999999999999999999999999965 6667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhc
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFFT 281 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~ 281 (942)
+..+...++.+.|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.++++.+|++ ..++..++.++...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 8888899999999999999999999999999999999999999 999999999999999988 77788888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 002286 282 GQHFLVEQLTETALA 296 (942)
Q Consensus 282 g~~~~a~~~~~~~~~ 296 (942)
|+.++|...+++++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 877777777777653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-14 Score=142.81 Aligned_cols=255 Identities=8% Similarity=-0.039 Sum_probs=179.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc-C-CHHHH
Q 002286 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL-G-QLGKA 216 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~-g-~~~~A 216 (942)
..+..++|+..+++++..+|++..+|..++.++...| .+++++.++..++..+|++ ..+|...+.++..+ + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-y~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-YQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhcCCChHHH
Confidence 3445678999999999999999999999999999999 5999999999999999999 78899999999998 8 99999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-----
Q 002286 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--------KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ----- 283 (942)
Q Consensus 217 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----- 283 (942)
+..+.++++.+|.|..+|...+.+....+. ++ +++..+.++++.+|.+..+|...+.++...+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~---~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFST---LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 999999999999999999999999888776 55 99999999999999999999988888877765
Q ss_pred --HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH
Q 002286 284 --HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (942)
Q Consensus 284 --~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (942)
+++++.++.+++... |.+..+|+.+..++...|....- .+ .++ .|... +. +.. ....-
T Consensus 222 ~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~~~~--~~-~~~-----~~~~~-~~-----~~~---~~~~~ 281 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLPLVP--IL-PAI-----LPYTA-SK-----LNP---DIETV 281 (349)
T ss_dssp HHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCSGG--GH-HHH-----GGGTC-------------------
T ss_pred HHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCCccc--cc-ccc-----ccccc-cc-----ccc---cchhH
Confidence 455555555555433 44445555555444444432000 00 000 00000 00 000 00111
Q ss_pred HHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHHH
Q 002286 362 LTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGE 418 (942)
Q Consensus 362 ~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~la~ 418 (942)
...+..++.. .+.++.++..++.+|...|+.++|...++.+. +.+|-....|...+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 1111111111 14566777777888877788788888887776 557776666655544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=136.03 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~ 734 (942)
+++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.++..+|++++|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHccHHHHH
Confidence 5556666778889999999999999999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 735 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 735 ~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
..|++++.. +|.++.+++.+|.+|...|++++|+..|++++.+.|+++
T Consensus 91 ~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999 556788999999999999999999999999999999876
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=165.96 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---ccHHhHHHHHHHHHHHHHhC
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~~A~~~~~~~~~~~ 264 (942)
+++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++..++..++.++... |+ +++|+..++++++.+
T Consensus 83 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 83 ASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred HHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence 99999999 788999999999999999999999999999999999999999999999 76 999999999999999
Q ss_pred CCCHHHHHHHH
Q 002286 265 PYCAMALNYLA 275 (942)
Q Consensus 265 p~~~~~~~~la 275 (942)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99887766555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-14 Score=146.36 Aligned_cols=174 Identities=9% Similarity=0.034 Sum_probs=154.3
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHH
Q 002286 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 632 (942)
Q Consensus 553 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 632 (942)
...|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|. ......
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~ 189 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGL 189 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999999999999999998884 444444
Q ss_pred hhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 002286 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (942)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (942)
..+.. +... +..+.|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|+. .
T Consensus 190 ~~~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~ 253 (287)
T 3qou_A 190 VAQIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---A 253 (287)
T ss_dssp HHHHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---G
T ss_pred HHHHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---c
Confidence 44544 5555 778889999999999999999999999999999999999999999999998832 2
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
++.++.++|.++...|+.++|+..|++++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3889999999999999999999999998864
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=133.93 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 002286 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (942)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 192 (942)
+-..|.+++..+|.++.+++.+|..++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
|++ +.+++.+|.++..+|++++|+..|+++++++|+++...
T Consensus 86 p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999 77799999999999999999999999999999876553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=148.17 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------H
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------C 376 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~ 376 (942)
.++..+|.+|.. |++++|+.+|++++...+... ....++..+|.++...|++++|+.+|++++...|.+ .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 455666777766 777777777777765432211 124556777777777788888888777777764432 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
.++..+|.++...|++++|+.+|++++ .+|..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 366777788888888888888888888 77754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-14 Score=146.80 Aligned_cols=213 Identities=14% Similarity=0.118 Sum_probs=156.6
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002286 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (942)
Q Consensus 317 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (942)
..|++.+|..+++++.+..+. . ++. ..+++++|+..|.++ |.+|...|++++|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~----~~~------~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--S----FMK------WKPDYDSAASEYAKA--------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--C----SSS------CSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc--c----ccC------CCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 346777888888877764331 1 111 147788888887765 45677788888888
Q ss_pred HHHHHHHHhCcC------cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 002286 397 ELLRKAAKIDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (942)
Q Consensus 397 ~~~~~~l~~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 468 (942)
..|.+++.+.+. ...++..+|.++ ..|++++|+.+|++++.+.+..+.... ..++.++|.++.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 888888877542 255778888888 888888888888888888766543322 4678888888888 9999999
Q ss_pred HHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHH
Q 002286 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548 (942)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 548 (942)
.+|++++...+... ..+....++.++|.++...|++++|+..|
T Consensus 136 ~~~~~Al~~~~~~~-------------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 178 (307)
T 2ifu_A 136 HLYQQAAAVFENEE-------------------------------------RLRQAAELIGKASRLLVRQQKFDEAAASL 178 (307)
T ss_dssp HHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------------------------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999887432100 11123567888899999999999999999
Q ss_pred HHHHHhCCCc------HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh
Q 002286 549 RLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (942)
Q Consensus 549 ~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 594 (942)
++++...|.+ ..+++.+|.++...|++++|+.+|++++ .+|....
T Consensus 179 ~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9998876543 3477788888888899999999999999 8887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=141.32 Aligned_cols=210 Identities=13% Similarity=0.065 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHhCCCCc-------
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-------ACVEFNRGRYSDSLEFYKRALQVHPSCP------- 196 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~------- 196 (942)
++..|.-+ ..+++..|...|.+++..+|+.+.+|+++ +.++...+++.+++..+++.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34444444 57899999999999999999999999999 8999999999999999999999877651
Q ss_pred -------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHh
Q 002286 197 -------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 197 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
..+++.++.++...|++++|...|..++...|++. +.+.+|.++...++ +.+|+..|+.+...
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r---~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER---WTDVIDQVKSAGKW 164 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC---HHHHHHHHTTGGGC
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC---HHHHHHHHHHhhcc
Confidence 12233466777777777777777777766666665 66666666666666 66666666533221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-c
Q 002286 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-F 341 (942)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~ 341 (942)
. +|. ...+++.+|.++...|++++|+.+|.+++.. +..|. .
T Consensus 165 ~------------------------------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~ 207 (282)
T 4f3v_A 165 P------------------------------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACA 207 (282)
T ss_dssp S------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTH
T ss_pred C------------------------------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCcccc
Confidence 1 111 1357888888888888888888888888741 11133 5
Q ss_pred hhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002286 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (942)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (942)
..+++.+|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 567888888888888888888888888888888 66665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-15 Score=160.37 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHH----HhhcCCCCcchHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 108 EHFILATQYYNK----ASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (942)
Q Consensus 108 ~~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~ 171 (942)
+.+++|+..+.. ++.++|.. ++...|.... ..+++++|+..|+.++..+|.++.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 456789999999 88888876 4444454432 45678889999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCc--------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 172 EFNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 172 ~~~~g~~~~A~~~~~~~l~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
++..|+|++|+..|++++..+|.+. ..+++.+|.|+..+|++++|+..|+++++++|+++.+++.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999984 47899999999999999999999999999999999999999
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV-EQLTETAL 295 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a-~~~~~~~~ 295 (942)
|.++...|+ +++|+..|++++.++|++..++..++.++...|+++++ ...+..++
T Consensus 237 g~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 GEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999999988887 44555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=129.85 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=112.6
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
..|.+++..+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+ +.+++.+|.++..+|++++|+..|+++++++|+++........+
T Consensus 85 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 E-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp C-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred C-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9 77799999999999999999999999999999887665444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=128.70 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=113.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 661 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
-..|++++..+|+++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|+++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhh
Q 002286 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 789 (942)
+.. .+.++.+++.+|.++...|++++|+..|++++.+.|+++.....
T Consensus 82 l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 82 AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999 56678899999999999999999999999999999998876433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=138.16 Aligned_cols=206 Identities=13% Similarity=-0.010 Sum_probs=159.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhhccHHhHHHHHHHHHHHHHhCCCCH------
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA------ 268 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------ 268 (942)
..|..+ ..+++..|...|.+++..+|+..++|..+ +.++...+. ..+++..+.+.+.+.|...
T Consensus 12 ~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 12 ESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhcc
Confidence 334443 46777777777777777777777777777 666666666 6677777777777655432
Q ss_pred ---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 269 ---------------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 269 ---------------~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.+...++.++...|+|++|...+..++.. .|... ..+.+|.+++..+++++|+..|..+..
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 34555788899999999999999887753 36666 889999999999999999999987764
Q ss_pred hcCCCCC-chhhhhcHHHHHHHcCChHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 334 EINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 334 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
. .++. ...+++.+|.++...|++++|+..|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+
T Consensus 164 ~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 164 W--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred c--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 1 1111 13478999999999999999999999998543 55 6779999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 002286 410 AQAFIDLGE 418 (942)
Q Consensus 410 ~~~~~~la~ 418 (942)
..++..|..
T Consensus 241 ~~~~~aL~~ 249 (282)
T 4f3v_A 241 PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 776655543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-13 Score=130.90 Aligned_cols=179 Identities=14% Similarity=0.075 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcccc----chHHHHHHHH
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND----DWVKAKETFR 617 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 617 (942)
.+|..+|+++.+. .++.+++.+|.++...+++++|+.+|+++... .++.+++.+|.+|.. + ++++|+..|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3567778887764 67888999999999999999999999998764 578888999999887 6 7888888888
Q ss_pred HhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh----cCCc
Q 002286 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAE----KGQF 691 (942)
Q Consensus 618 ~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~----~g~~ 691 (942)
++.... +..+.+.+|.+ |....... +++++|+.+|++++..+| +++.+++.||.+|.. .+++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~-y~~g~g~~--------~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARV-LVNRQAGA--------TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHTT---CHHHHHHHHHH-HTCGGGSS--------CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHCC---CHHHHHHHHHH-HHcCCCCc--------cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 886643 56677778877 66521101 678888888888888877 357788888888887 7778
Q ss_pred hHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh-c-----CHHHHHHHHHHHHhh
Q 002286 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-G-----NFALAMKMYQNCLRK 743 (942)
Q Consensus 692 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 743 (942)
++|+.+|+++.+. | .++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 146 ~~A~~~~~~A~~~-~-----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 146 VKASEYFKGSSSL-S-----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHT-S-----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 8888888888776 3 4566788888887754 2 788888888888775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=156.11 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=135.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHH
Q 002286 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (942)
Q Consensus 141 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (942)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 002286 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT---GQHFLVEQLTETALAV 297 (942)
Q Consensus 221 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~a~~~~~~~~~~ 297 (942)
+++++.+|++..++..+|.++...|+ +++|+..|+++++.+|+++.++..++.++... |++++|...+++++..
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999 9999999999999886
Q ss_pred CCCCCchhHHHHHHH
Q 002286 298 TNHGPTKSHSYYNLA 312 (942)
Q Consensus 298 ~~~~~~~~~~~~~la 312 (942)
.+. ....+..++
T Consensus 158 ~p~---~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVG---AVEPFAFLS 169 (568)
T ss_dssp TCC---CSCHHHHTT
T ss_pred CCc---ccChHHHhC
Confidence 633 334444444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-13 Score=118.10 Aligned_cols=134 Identities=25% Similarity=0.493 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.. ..++..+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHH
Confidence 4677888999999999999999999998889888888899999999999999999999999988887 667888899999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
..|++++|+..+++++...|.+..++..+|.++...|+ +++|+..+.+++..+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 99999999999999999999888888889999888888 88899999888888775
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-11 Score=131.88 Aligned_cols=208 Identities=12% Similarity=0.009 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002286 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 438 (942)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~ 438 (942)
......|++++...|..+.+|...+..+...|+.+.|..+|++++.. |.+...++..+.....+ +. ++.+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~---~~---~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEE---AV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCT---HH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchh---HH---HHHHHHH
Confidence 45678999999999999999999999999999999999999999999 99887777655543222 11 2222211
Q ss_pred H---HH-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhh
Q 002286 439 L---KK-----AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 510 (942)
Q Consensus 439 ~---~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (942)
. .. .....+..+|...+....+.+..+.|...|.++ .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---------------------------------- 313 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G---------------------------------- 313 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----------------------------------
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----------------------------------
Confidence 0 00 000012356777777777888899999999999 4
Q ss_pred hccCCCCCCCCCcchhHHHHHHHHHhhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 002286 511 FENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (942)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 589 (942)
.++....++...|.+....+ +.+.|..+|+.+++..|+.+..+...+......|+.+.|..+|+++
T Consensus 314 ---------~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~---- 380 (493)
T 2uy1_A 314 ---------NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL---- 380 (493)
T ss_dssp ---------TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----
T ss_pred ---------CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 11223456666676665555 6999999999999999999888888888888999999999999997
Q ss_pred CCChhHHHHhhhhhccccchHHHHHHHHHhhc
Q 002286 590 GKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (942)
Q Consensus 590 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (942)
+.+..+|.....+-...|+.+.+...+++.+.
T Consensus 381 ~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888888888999999998988875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=124.12 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=112.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002286 662 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741 (942)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 741 (942)
..|++++..+|++..+++.+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----YDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 742 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.. .+.++.+++.+|.++...|++++|+.+|++++.+.|+++........+
T Consensus 80 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 80 LM--DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred hc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99 566788999999999999999999999999999999988776554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-13 Score=128.38 Aligned_cols=174 Identities=10% Similarity=0.053 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHH
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----RYSDSLEFYKR 187 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g----~~~~A~~~~~~ 187 (942)
+|+.+|.++... .++.+++.+|.++...|++++|+..|+++... .++.+++.+|.++.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577888888764 67888999999999999999999999988764 578888888888887 6 88899999988
Q ss_pred HHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----hccHHhHHHHHHHH
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQ----ANEAAGIRKGMEKM 257 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~~~~A~~~~ 257 (942)
+.. +.+ +..++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.||.++.. .++ +.+|+..|
T Consensus 79 A~~--~g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 79 AVE--AGS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHH--TTC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHH--CCC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 865 344 6667888888887 7888888888888888877 347888888888887 555 88888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhc
Q 002286 258 QRAFEIYPYCAMALNYLANHFFFT-G-----QHFLVEQLTETALAV 297 (942)
Q Consensus 258 ~~~~~~~p~~~~~~~~la~~~~~~-g-----~~~~a~~~~~~~~~~ 297 (942)
+++... |.++.+++.++.+|... | ++++|..+++++...
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 888877 56666777777766543 2 666666666666543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=117.36 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002286 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (942)
Q Consensus 85 ~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 164 (942)
++..+|.+|...|+.. +|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHH-----------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 5667888888887766 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
+..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|...|.+++..+|++
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999988 7778999999999999999999999999999863
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-13 Score=118.68 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=99.2
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999999999999999999999888 777888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLD------PENVEALVALAVMDL 242 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~ 242 (942)
++..+|++++|+..|+++++++ |.+..++..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999998888 887777777766543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-14 Score=147.23 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhc
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNR 175 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~ 175 (942)
.+|+..|.+++..+|.++.++..+|.+++..|++++|+..|++++...|.+ ..++..+|.++...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 378888888888889999999999999999999999999999999999998 69999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHH-H
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG-M 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A-~ 254 (942)
|+|++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|+ +.+| .
T Consensus 210 g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~ 285 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLAREK 285 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999999998 7777 4
Q ss_pred HHHHHHHHh
Q 002286 255 EKMQRAFEI 263 (942)
Q Consensus 255 ~~~~~~~~~ 263 (942)
..|.+++..
T Consensus 286 ~~~~~~~~~ 294 (336)
T 1p5q_A 286 KLYANMFER 294 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666644
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=126.84 Aligned_cols=130 Identities=12% Similarity=0.172 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhcCCh--HHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV-EFNRGRY--SDSL 182 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~-~~~~g~~--~~A~ 182 (942)
..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 356777999999999999999999999999999999999999999999999999999999999999 7889998 9999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
..|++++..+|++ ..+++.+|.++...|++++|+..|+++++.+|++......
T Consensus 102 ~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 102 AMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999999999998 7778999999999999999999999999999987654433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=139.35 Aligned_cols=197 Identities=11% Similarity=0.025 Sum_probs=140.8
Q ss_pred CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHH
Q 002286 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (942)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 204 (942)
|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999988 77788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
.++..+|++++|+..|+++++++|++...+.......... .++...........|.++.+...++.++ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------AKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 9999999999999999999998886532222122222221 1122222222345566666666665543 5677
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 002286 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASVK 333 (942)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 333 (942)
++|+..++.++... |.+......++..+... +.+++|...|.++..
T Consensus 152 ~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGH---EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTT---SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccc---cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777666543 44445555555555444 556677777766654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=131.16 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=169.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc
Q 002286 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (942)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 605 (942)
...+.+.+++..+|++.... . .+....+...++..+ . ++ |+..+++.+...+.++.++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 56667778888888876421 1 111222333333332 2 22 7888888887766667777889999999
Q ss_pred ccchHHHHHHHHHhhccCC-CCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC------CHHHH
Q 002286 606 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 678 (942)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~ 678 (942)
.|++++|+..+.+.+...| .....+...++.+ |... |+.+.|.+.++++.+.+|+ .+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999888776 2355666677777 8888 9999999999999888883 33334
Q ss_pred HHHHHHHHhcC--CchHHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC--------
Q 002286 679 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-------- 746 (942)
Q Consensus 679 ~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------- 746 (942)
..-+++....| ++.+|..+|+++.+..| + .+..+++ ++..+|++++|...++.+++.+|.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 89999999999887765 3 3445555 899999999999999988887654
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
+.++.++.+++.+.+..|+ +|.+++.++....|++|.+.-
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 5679999899888888997 889999999999999987553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-13 Score=136.12 Aligned_cols=195 Identities=15% Similarity=-0.009 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...+..+|..+...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 4 a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYP-----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 346778888888888776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
.+++.+|.++...|++++|+..|++++..+|+++ ..+...+.... ...++...........|.+......++.+.
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR-LNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-hhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 9999999999999999999999999999998762 22222222222 233344444445556777888777777765
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV 297 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~a~~~~~~~~~~ 297 (942)
.|+ +++|+..++++++.+|.+......++..+... +.++++..+|.++...
T Consensus 148 -~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 -AAE---RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHH---HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHH---HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455 99999999999999999998888888777776 7788999999988753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=142.70 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--Ch
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RY 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~ 178 (942)
++|+..+++++..+|.+..+|..++.++...|+ +++|+.++++++..+|++..+|..++.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 489999999999999999999999999999998 999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-----------
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------- 246 (942)
++++.++.++++.+|.+ ..+|...+.++..+| .+++++.++.++++.+|.+..+|..++.++...+.
T Consensus 126 ~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999 788999999999999 99999999999999999999999999999887521
Q ss_pred HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 247 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
.+.++++++.+.+++..+|++..+|+.++.++...+.+.+
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2458999999999999999999999999999888877544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=115.13 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHH
Q 002286 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (942)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 751 (942)
|.+...+..+|..+...|++++|+..|+++++..| .++.+|+++|.++..+|++++|+..|++++.. .+.++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 73 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVR 73 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHH
Confidence 44567889999999999999999999999999998 78999999999999999999999999999999 566799
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCChhhHhhHHHHHHH
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVAMQK 796 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 796 (942)
+++.+|.++...|++++|+..|++++.++ |+++.++..++.+..+
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 9999988888887543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-12 Score=117.55 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=116.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+ ..+++.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999988 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhccHHhHHHHHHHHHHHHHh
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEI 263 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~A~~~~~~~~~~ 263 (942)
...|++++|+..|+++++.+|.+..++..++.+ +...|+ +++|+..+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 999999999999999999999998888555444 666676 88888888776543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=125.12 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=117.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH-HHHcCCH--H
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQL--G 214 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~-~~~~g~~--~ 214 (942)
+...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ +.++..+|.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcchH
Confidence 4568899999999999999999999999999999999999999999999999999998 7789999999 8899998 9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHH
Q 002286 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (942)
Q Consensus 215 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 271 (942)
+|+..|++++..+|++..++..+|.++...|+ +++|+..|++++..+|.++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999 9999999999999999886444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=121.95 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=106.2
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
++.++..++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 455677899999999999999999999999999999999999999999999999999999999999999998 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
|.++..+|++++|+..|+++++++|++..+++..+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999988776666443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-11 Score=119.87 Aligned_cols=246 Identities=13% Similarity=0.037 Sum_probs=151.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 002286 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (942)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 127 (942)
.-+|-.|.|..++.-..+.....+ ......+..+|+.+|+.... .. ++..
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~-----------~~~~~~~~Rs~iAlg~~~~~------------------~~-~~~~ 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTD-----------NTLLFYKAKTLLALGQYQSQ------------------DP-TSKL 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCC-----------HHHHHHHHHHHHHTTCCCCC------------------CS-SSTT
T ss_pred HHHHHhhHHHHHHHHHHhcCccch-----------HHHHHHHHHHHHHcCCCccC------------------CC-CCHH
Confidence 345667999999996665433322 23556677888888886521 11 1111
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCchhhHhhHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP--SCPGAIRLGIGL 205 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~la~ 205 (942)
..+.-.++..+ .++ |+..|++.+...+.+..+++.+|.++...|++++|+.++.+.+..+| .. ..++..++.
T Consensus 71 ~~a~~~la~~~--~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~-lea~~l~vq 144 (310)
T 3mv2_B 71 GKVLDLYVQFL--DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT-TELLLLAIE 144 (310)
T ss_dssp HHHHHHHHHHH--TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH-HHHHHHHHH
T ss_pred HHHHHHHHHHh--ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc-HHHHHHHHH
Confidence 11222222222 233 78888888877666777778999999999999999999999988887 44 677888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHH--HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 206 CRYKLGQLGKARQAFQRALQLDPE----NVEALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
++..+|+.+.|...++++.+.+|+ +...+..+ +.+.+..|. +.+.+|...|+++....|+.......+. ++.
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~ 222 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQTFPTWKTQLGLLN-LHL 222 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSCSHHHHHHHHH-HHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCCCcccHHHHHH-HHH
Confidence 999999999999999999888883 22333333 444555551 1288888888888777775222111122 555
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-------CCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 280 FTGQHFLVEQLTETALAVTNH-------GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 280 ~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
..|++++|...++.++...+. .|.++.++.+++.+....|+ +|.+++.++.+
T Consensus 223 ~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 555655555555544432111 13444444444444444444 44444444444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=115.99 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=104.3
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
.|.++.+++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+ ..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 456677888889999999999999999999888888888888888888888899999999999888888887 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 245 (942)
|.++...|++++|+..|++++..+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888877655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=113.68 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=104.5
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
+|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+.+++..+|.+ ..+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHH
Confidence 455667888888888888899999999988888888888888888888888888888888888888888888 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888877765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-12 Score=123.19 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 209 (942)
.++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 35666777777777777777777764 33 56677777777777777777777777777777776 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 210 LGQLGKARQAFQRALQLDPENV----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
.|++++|+..|+++++..|.+. .++..+|.++...|+ +++|+..|++++..+|.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcccc
Confidence 7777777777777777666655 777777777777777 7777777777777777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-12 Score=122.26 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002286 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (942)
Q Consensus 83 ~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 162 (942)
...++.+|..+...|+.. +|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~-----------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWK-----------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCHH-----------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 334667888888888766 9999999996 34 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
.+++.+|.++...|++++|+..|++++...|.+. ..+++.+|.++...|++++|+..|+++++.+
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988862 2778999999999999999999999999999
Q ss_pred CCC
Q 002286 228 PEN 230 (942)
Q Consensus 228 p~~ 230 (942)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 986
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-09 Score=121.18 Aligned_cols=209 Identities=6% Similarity=0.017 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhh
Q 002286 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (942)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (942)
.......|++++...|.++..|+..+......|+.+.|...+++++.. |.+...+..++... ..++ ....+....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~ 269 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999 99988877666552 1111 111111111
Q ss_pred ccCC--------CCc-hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-C
Q 002286 621 DATD--------GKD-SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-Q 690 (942)
Q Consensus 621 ~~~~--------~~~-~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~ 690 (942)
.... ... ...+...+.. .... +..+.|..+|.++ ...+.....+...|.+....+ +
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~-~~r~------------~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNY-VLKK------------RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp C----------CHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HhhccchhhhhcccccHHHHHHHHHH-HHHc------------CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC
Confidence 1111 000 1122222222 2222 6789999999999 433334455555565555555 6
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHH
Q 002286 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (942)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 770 (942)
.+.|..+|+.+++..| +.+..|...+......|+.+.|...|+++. ....++......-...|+.+.+.
T Consensus 336 ~~~ar~ife~al~~~~-----~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHP-----DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp SHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999887 678888888888889999999999999972 23667777777777789999999
Q ss_pred HHHHHHHHh
Q 002286 771 KSLLRAIHL 779 (942)
Q Consensus 771 ~~~~~al~~ 779 (942)
+.+++++..
T Consensus 405 ~v~~~~~~~ 413 (493)
T 2uy1_A 405 ELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=113.02 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.++|++ ..+++.+|.++
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~ 95 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSH 95 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 34688899999999999999999999999999999999999999999999999999999999999998 67889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
...|++++|+..|+++++.+|++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999987643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-12 Score=117.15 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH
Q 002286 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (942)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (942)
++.++.++..+|.++...|++++|+..|+++++..| .++.+|+++|.+|...|++++|+..|++++.. .+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 456788899999999999999999999999999998 78999999999999999999999999999999 56679
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
.+++.+|.++...|++++|+.+|++++.++|+++..+++.+++
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999988877765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=128.93 Aligned_cols=151 Identities=16% Similarity=0.097 Sum_probs=83.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---------------hhh
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAI 199 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~ 199 (942)
+......|.+++|.+.++......+.....+..+|.+++..|+|++|+..|++++...|.++ ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33344445555555555544444444455555666666666666666666666666555552 145
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 279 (942)
+..+|.++..+|++++|+..+++++..+|++..+++.+|.++...|+ +++|+..|++++.++|.++.++..++.++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666 666666666666666666666666666655
Q ss_pred hcCCHHHHH
Q 002286 280 FTGQHFLVE 288 (942)
Q Consensus 280 ~~g~~~~a~ 288 (942)
..++..++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555544433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=116.03 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002286 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (942)
Q Consensus 80 ~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 159 (942)
.+....+..+|..+...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 356778889999999888776 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHh--hHHHHHHHcCCHHHHHHHHHHHHhh
Q 002286 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQL 226 (942)
Q Consensus 160 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~ 226 (942)
.++.+++.+|.++...|++++|+..|++++..+|.+ ..++. .++..+...|++++|+..+.++...
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999998 55564 4455588899999999999987654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-13 Score=128.19 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhc
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNR 175 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~~a~~~~~~ 175 (942)
+|...+.......+.....+..+|..++..|++++|+..|.+++...|.++ .++..+|.++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555444444455567889999999999999999999999999999887 8999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHH
Q 002286 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 176 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
|++++|+..+++++..+|.+ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++ ..++.
T Consensus 102 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~ 176 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE---ARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---HHC--
T ss_pred cCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH---HHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999988877 55554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=108.50 Aligned_cols=120 Identities=27% Similarity=0.503 Sum_probs=101.3
Q ss_pred CCCC-cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 124 DMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 124 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
+|.. +.+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHH
Confidence 4544 67788888899999999999999999988888888888888999989999999999999998888887 667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+|.++...|++++|...|++++..+|+++.++..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 888888899999999999998888888888888888877654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=127.83 Aligned_cols=193 Identities=15% Similarity=0.088 Sum_probs=144.7
Q ss_pred CCCCCChhHHHHHHHh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcch
Q 002286 20 DQLPRDASDILDILKA-EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98 (942)
Q Consensus 20 ~~lp~~~~~~~~~l~~-~~~~~~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 98 (942)
+-+.-++.++...... .+.....+...+..|+.+|++++|+..+.+++...+.. .........+..+|.+|...|.
T Consensus 54 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T 2qfc_A 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVD 130 (293)
T ss_dssp TTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCC
Confidence 4444456666655443 34556678899999999999999999998876543321 1112344555667777777776
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcCCCC------cchHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHH
Q 002286 99 IETKQREKEEHFILATQYYNKASRIDMHE------PSTWVGKGQLLLAKGEVEQASSAFKIVL---EADRDNV----PAL 165 (942)
Q Consensus 99 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~~~ 165 (942)
.+ +|+..|++++...+.. ..++..+|.+|...|++++|+.+|++++ ...|++. .++
T Consensus 131 ~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 131 YE-----------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HH-----------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 65 8999999998765543 3477889999999999999999999998 5566543 588
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCC-----chhhHhhHHHHHHHcCCHHHH-HHHHHHHHhh
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 226 (942)
+.+|.++...|+|++|+.++++++...+.. ...+++.+|.++..+|++++| ...|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999998775321 256678899999999999999 7778888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-12 Score=111.13 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=92.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhhHh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~ 201 (942)
..++..+|..++..|+|++|+..|++++..+|+++.++..+|.++...|+|++|+..|+++++++|+.. ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 346778999999999999999999999999999999999999999999999999999999999988763 23677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
.+|.++..+|++++|+..|++++..+|+ ++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 8899999999999999999999998875 4443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-12 Score=112.40 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=104.1
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+|.++..++.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 4577888999999999999999999999999999999999999999999999999999999999999999998 778899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 243 (942)
+|.++...|++++|+..|+++++.+|+ +..+...+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 55665555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-11 Score=124.56 Aligned_cols=182 Identities=11% Similarity=0.035 Sum_probs=146.1
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChh------HHHHhhhhhccccchHHHHHHHHHhhccCCCC-c
Q 002286 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D 627 (942)
Q Consensus 555 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 627 (942)
+|.....+...+..+...|++++|+..+.+++...|.... .+..+|.++...|++++|+..|.+++...+.. +
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455667778888899999999999999999998876543 45678888899999999999999998754331 1
Q ss_pred ----hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHhcCCchHHHH
Q 002286 628 ----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 696 (942)
Q Consensus 628 ----~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~a~~~la~~~~~~g~~~~A~~ 696 (942)
..++..+|.+ |... |++++|+.+|++++ ...|++. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 3478889999 9988 99999999999999 5556533 588999999999999999999
Q ss_pred HHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHH-HHHHHHHHhhhCCCCC
Q 002286 697 LFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNTD 749 (942)
Q Consensus 697 ~~~~~~~~~p~~~~-~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 749 (942)
.++++++..+.... ...+.+++++|.+|..+|++++| ..+|++++..+....+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999987642211 12377899999999999999999 7779999877544444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-12 Score=111.65 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---- 749 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 749 (942)
...++..+|.++...|++++|+..|+++++..| .++.+|.++|.+|..+|++++|+..|+++++..|....
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 456778899999999999999999999999998 78999999999999999999999999999998765443
Q ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 750 -AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 750 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
..++..+|.++...|++++|+++|++++...|+.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 4688999999999999999999999999999863
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=110.46 Aligned_cols=122 Identities=17% Similarity=0.263 Sum_probs=111.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 158 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
.|.++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45668899999999999999999999999999999988 77899999999999999999999999999999999999999
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 283 (942)
|.++...|+ +++|+..+++++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999 9999999999999999998888888888776653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-14 Score=153.89 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=140.5
Q ss_pred HHHHHHHHHHH----HhhcCCCCcchHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 109 HFILATQYYNK----ASRIDMHEPSTWVGKGQLL------------LAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (942)
Q Consensus 109 ~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~------------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~ 172 (942)
.++.|+..+++ ++.++|.. +|...|... ...+++++|+..|+.++...|....++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45677777776 67777753 232222211 1345677888888888888888889999999999
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCc--------------hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 173 FNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 173 ~~~g~~~~A~~~~~~~l~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
+..|+|.+|+..|++++..+|.+. ..+++.+|.|+..+|++++|+..|+++++++|++..+++.+|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999999998874 477888999999999999999999999999999999999999
Q ss_pred HHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002286 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (942)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~ 289 (942)
.++...|+ +++|+..|+++++++|++..++..++.++...+++.++.+
T Consensus 359 ~a~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 359 EAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 9999999999999999998888888888888888776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=106.18 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=102.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+ ..++..+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999988 77788999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
...|++++|...|+++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999998888887664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=110.16 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 157 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
.+|.++.++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..+.+++..+|+++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 345567889999999999999999999999999999998 7789999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 002286 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (942)
Q Consensus 237 l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 284 (942)
+|.++...|+ +++|+..+++++..+|.++.++..++.++...|++
T Consensus 86 ~~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNK---HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999 99999999999999999999999998888887765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=112.42 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHh-----
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------NVP-----ALLGQACVEFNRGRYSDSLEFYKRALQV----- 191 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~~a~~~~~~g~~~~A~~~~~~~l~~----- 191 (942)
..++..|..++..|+|++|+..|++++..+|+ +.. +|..+|.++...|+|++|+..|++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 35677788888888888888888888888887 333 6666677777777777777777766666
Q ss_pred --CCCCchhhH----hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 192 --HPSCPGAIR----LGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 192 --~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
+|++ ..+| +.+|.++..+|++++|+..|+++++++|++..
T Consensus 92 e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6665 5556 66666666666666666666666666665443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=126.24 Aligned_cols=169 Identities=12% Similarity=0.070 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhhcCCChh------HHHHhhhhhccccchHHHHHHHHHhhccCCC-Cc----hhHH
Q 002286 563 LRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-KD----SYAT 631 (942)
Q Consensus 563 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 631 (942)
...+..+...|++++|...+++++...+..+. .+..+|.++...|++++|+..|++++...+. .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33455667777888888888877776666554 2234777777788888888888888875433 22 2257
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (942)
..+|.+ |... |++++|+.+|++++.. .|....+++++|.+|...|++++|+..++++++.
T Consensus 159 ~~lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 159 NAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 788888 8888 8999999999998842 1223446677777777777777777777777776
Q ss_pred hcCCCC-CCchhHHHHHHHHHHHhc-CHHHHHHHHHHHHhhh
Q 002286 705 ASGSVF-VQMPDVWINLAHVYFAQG-NFALAMKMYQNCLRKF 744 (942)
Q Consensus 705 ~p~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 744 (942)
.+.... ...+.+++++|.++..+| .+++|+..|++++..+
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 643211 123667777777777777 4577777777777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=124.98 Aligned_cols=171 Identities=15% Similarity=0.088 Sum_probs=118.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc---hhhhhc
Q 002286 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYG 347 (942)
Q Consensus 274 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~ 347 (942)
.+..++..|++++|...+++++......+.. ...+..+|.++...|++++|+.+|.+++......++. ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3555666677777777777666544333322 1234457888888888888888888888743322222 335778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHH
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEI---Y----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFI 414 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~ 414 (942)
+|.+|...|++++|+.+|+++++. . +....++.++|.+|...|++++|+.++++++.+.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888888752 1 1224577888888888888888888888888765333 67788
Q ss_pred HHHHHH-hcC-CHhHHHHHHHHHHHHHHHcCC
Q 002286 415 DLGELL-ISS-DTGAALDAFKTARTLLKKAGE 444 (942)
Q Consensus 415 ~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~~ 444 (942)
.+|.++ ..| ++++|+.+|++++.+....+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 888888 777 458888888888887766544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-11 Score=105.90 Aligned_cols=116 Identities=21% Similarity=0.178 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc--hhhHhh
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~ 202 (942)
+.+++.+|..++..|++++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|++++..+|+++ +.+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35678899999999999999999999999999887 7899999999999999999999999999998873 456888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+|.++..+|++++|+..|++++..+|++..+......+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999988776666555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=143.12 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHh
Q 002286 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFN 174 (942)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~ 174 (942)
|++|+..|..++..+|.....+..+|..++..|+|++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777888888888889999999999999999999999999999999998 6899999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHH
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~ 254 (942)
.|+|++|+..|++++.++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.++.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~ 405 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999 78899999999999999999999999999999999999999999999988 66665
Q ss_pred H-HHHHHH
Q 002286 255 E-KMQRAF 261 (942)
Q Consensus 255 ~-~~~~~~ 261 (942)
. .+.+++
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 344333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=110.28 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=107.7
Q ss_pred hcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh
Q 002286 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (942)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 198 (942)
..+|.+...++.+|..++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|.+ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH
Confidence 3457788899999999999999999999999999999987 8889999999999999999999999999999988 77
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
+++.+|.++...|++++|+..|++++..+|++..++..++.+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78899999999999999999999999999999988887777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-10 Score=130.51 Aligned_cols=174 Identities=12% Similarity=0.015 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC-
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG- 211 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g- 211 (942)
..++|+..+++++..+|++..+|..++.++...|+ +++++.++.+++..+|++ ..+|...+.++..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccc
Confidence 34788999999999999999999999999999998 999999999999999999 788999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-cHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------
Q 002286 212 -QLGKARQAFQRALQLDPENVEALVALAVMDLQAN-EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-------- 281 (942)
Q Consensus 212 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-------- 281 (942)
++++|+..+.++++.+|.+..+|...+.+....| . ++++++.+.++++.+|.+..+|...+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999999999999999999999998 6 89999999999999999999999999998875
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHH
Q 002286 282 ------GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (942)
Q Consensus 282 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (942)
+.+++++.++.+++... |.+..+|+.++.++...+.+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCccc
Confidence 45677888888888754 6666888888888888777544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=113.95 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
...+...|..++..|+|++|+..|.+++.. +|.++.++..+|.++...|+|++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456788999999999999999999999988 66667888888888888899999999999998
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhh
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQA 244 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~ 244 (942)
.++|++ ..+++.+|.++..+|++++|+..|++++.++|++. .+...++.+....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 888888 67788888899889999999999999888888887 5555666555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=106.09 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
.++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788899999999999999999999999998 77888999999999999999999999999999999999999999999
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
.|+ +++|+..++++++.+|.+.
T Consensus 98 ~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHH---HHHHHHHHHHHHC------
T ss_pred cCC---HHHHHHHHHHHHHhCcCCC
Confidence 988 9999999999999888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=102.88 Aligned_cols=121 Identities=29% Similarity=0.457 Sum_probs=108.0
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002286 158 DRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (942)
Q Consensus 158 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 236 (942)
+|.. ..+++.+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++..+|.++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 5555 7789999999999999999999999999999988 7778999999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 002286 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (942)
Q Consensus 237 l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 282 (942)
+|.++...|+ +++|+..+++++..+|.++.++..++.++...|
T Consensus 83 la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999988888887776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-11 Score=111.23 Aligned_cols=122 Identities=13% Similarity=0.193 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--------CCC-----CCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--------GSV-----FVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 740 (942)
.+..+..+|..+...|++++|+..|.+++...+ .+. .+..+.+|+++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345678899999999999999999999999821 000 1266789999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh-hhHhhHHHHHHHH
Q 002286 741 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY-TLRFDAGVAMQKF 797 (942)
Q Consensus 741 l~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 797 (942)
+.. ++.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 998 677899999999999999999999999999999999998 7788888865544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-11 Score=107.95 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=104.0
Q ss_pred HhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 156 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
..+|.++..++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|+++++.+|+++.+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3467889999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccHHhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 002286 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-----CAMALNYLANH 277 (942)
Q Consensus 236 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~ 277 (942)
.+|.++...|+ +++|+..|.+++..+|+ +..+...+..+
T Consensus 82 ~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 82 FLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999887 45454444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=104.77 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=96.1
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC--CchhhHh
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--CPGAIRL 201 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 201 (942)
+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|. . ..++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~ 80 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWA 80 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHH
Confidence 68888899999999999999999999999999999999999999999999999999999999999999988 7 67788
Q ss_pred hHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 002286 202 GIGLCRYKL-GQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 202 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 230 (942)
.+|.++... |++++|+..+++++...|.+
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 899999999 99999999999999988865
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-10 Score=126.25 Aligned_cols=175 Identities=9% Similarity=0.108 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HH
Q 002286 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IE 449 (942)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~ 449 (942)
++..+|.+|...|++++|..++.+++...+.. ..+...++.++ ..|+++.|+.++++++...+..+.... ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46788999999999999999998888765432 23455677777 889999999999999998887654433 57
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHH
Q 002286 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (942)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (942)
++..+|.++...|++.+|...+.+++..... ....+....++.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-------------------------------------~~~~~~~~~~~~ 179 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKK-------------------------------------LDDKPSLVDVHL 179 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-------------------------------------SSCSTHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHh-------------------------------------cccchhHHHHHH
Confidence 8899999999999999999999998763210 113455778899
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhCC---Cc----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 002286 530 NLARLLEQIHDTVAASVLYRLILFKYQ---DY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (942)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 589 (942)
.+++++...|++++|..+|++++...+ +. ...+..+|.++...|++.+|..+|.+++...
T Consensus 180 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 180 LESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999987542 22 4567778888889999999999999988754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-11 Score=102.86 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 753 (942)
.+.++..+|.++...|++++|+..|++++...| .++.++.++|.++...|++++|+..|++++.. .+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 75 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHH
Confidence 456788999999999999999999999999987 78999999999999999999999999999998 45678999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHH
Q 002286 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (942)
Q Consensus 754 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 794 (942)
..+|.++...|++++|...+++++...|+++.++++++.+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=116.81 Aligned_cols=165 Identities=19% Similarity=0.191 Sum_probs=123.4
Q ss_pred ccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHh------cCCCCHHH
Q 002286 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 677 (942)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~a 677 (942)
+..|++++|...++.+.. .|.....++..+|.+ |... |++++|+..|++++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345666666664333322 333355666677777 7766 777777777777777 44556778
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC-CC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HH
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (942)
+..+|.++...|++++|+..+.++++.....+ .+ ....++.++|.++...|++++|+..+++++...+...+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 89999999999999999999999998853221 11 23567899999999999999999999999987655555 44
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 002286 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (942)
Q Consensus 752 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 782 (942)
++..+|.++...|++++|..++++++.+...
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=108.08 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------h-----hhHhhHHHHHHHcCCHHHHHHHHHHHHhh----
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------G-----AIRLGIGLCRYKLGQLGKARQAFQRALQL---- 226 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 226 (942)
...+..+|..++..|+|++|+..|+++++.+|+++ . .+|..+|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45678899999999999999999999999999931 2 28999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 227 ---DPENVEAL----VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 227 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
+|++..+| +.+|.++...|+ +++|+..|+++++++|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999 999999999999999887643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=112.83 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=93.5
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC
Q 002286 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG 390 (942)
Q Consensus 317 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g 390 (942)
..|++++|...++.... .++....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333321 22244455555666666666666666666665552 2233456666677777777
Q ss_pred CHHHHHHHHHHHHHh---Cc----CcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc
Q 002286 391 QIEKAQELLRKAAKI---DP----RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (942)
Q Consensus 391 ~~~~A~~~~~~~l~~---~p----~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~ 461 (942)
++++|+.++.+++.. .+ ....++..+|.++ ..|++++|+..+++++...+..+.... ..++..+|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777766665 22 2244566667777 777777777777777766555432211 24567778888888
Q ss_pred CCHHHHHHHHHHHhhc
Q 002286 462 GEFESAHQSFKDALGD 477 (942)
Q Consensus 462 g~~~~A~~~~~~al~~ 477 (942)
|++++|..++++++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888887764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=106.84 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002286 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (942)
Q Consensus 104 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 173 (942)
..+.+.|++|+..++++++.+|+++.+|+.+|.++...|++ ++|+..|+++++++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998876 47888888888888888888888887777
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002286 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (942)
Q Consensus 174 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (942)
..|.+ .|+. +. ..|++++|+.+|+++++++|++..
T Consensus 92 ~lg~l-------------~P~~-~~----------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFL-------------TPDE-TE----------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHH-------------CCCH-HH----------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred Hhccc-------------Ccch-hh----------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 76532 2222 10 024666666666666666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-11 Score=102.58 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=101.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
++|+++.++..+|.++...|++++|+..|+++++..| .++.+++++|.++...|++++|+..|+++++..|...+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch
Confidence 3688999999999999999999999999999999987 78899999999999999999999999999998543227
Q ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCCh
Q 002286 750 AQILLYLARTHYEA-EQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 750 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~ 784 (942)
+.++..+|.++... |++++|++++++++...|+++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 89999999999999 999999999999999999875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-10 Score=101.16 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch--hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN---VEALVAL 237 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 237 (942)
.+++.+|.+++..|++++|+..|++++..+|+++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 35678899999999999999999999999998832 678999999999999999999999999999999 8899999
Q ss_pred HHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 238 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
|.++...|+ +++|+..|++++..+|+++.+......+.
T Consensus 83 a~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGK---NTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999 99999999999999999987766555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=101.73 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC-CC--
Q 002286 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD-- 749 (942)
Q Consensus 673 ~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~-- 749 (942)
..+.++..+|.++...|++++|+..|.+++...| .++.+++++|.++...|++++|+..|++++...|.. .+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4466788999999999999999999999999987 789999999999999999999999999999987643 23
Q ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 750 --AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 750 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
+.+++.+|.++...|++++|+.+|++++...| ++.+...++.+....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999 688888888875544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-10 Score=104.66 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=108.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM---PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
.+|.+...+..+|..+...|++++|+..|+++++..| ++ +.+++++|.++...|++++|+..|++++.. .
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~ 95 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--D 95 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--T
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--C
Confidence 4578899999999999999999999999999999887 54 889999999999999999999999999998 4
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+.++.+++.+|.++...|++++|+.+|++++..+|+++.++..++.+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 56689999999999999999999999999999999999988887775
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.8e-10 Score=121.59 Aligned_cols=204 Identities=11% Similarity=0.096 Sum_probs=143.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
.|.+.+..|..+...|+|++|++.|..+++..|... .++..+|.+|...|++++|+..+.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888888899999999999999988877542 357788888888888888888888888
Q ss_pred HhCCCCc-----hhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 190 QVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 190 ~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
...+... ..++..+|.++...|+++.|+..++.++...+ ....++..+|.++...|+ +.+|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 159 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIN 159 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHH
Confidence 7765442 23455677777778888888888888876532 234567777888888877 788888777
Q ss_pred HHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chhHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 259 RAFEIY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP----TKSHSYYNLARSYHSKGDYEKAGLYY 328 (942)
Q Consensus 259 ~~~~~~------p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (942)
+++... |....++..++.+|...|++.+|..++++++......+ .....+..+|..+...|++.+|..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 776542 22345666667777777777777777776664322111 12445666677777777777777777
Q ss_pred HHHHH
Q 002286 329 MASVK 333 (942)
Q Consensus 329 ~~a~~ 333 (942)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=102.59 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=101.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc------hhhH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~ 200 (942)
.+..++.+|..+...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..|++++...|... ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999877541 4568
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+.+|.++...|++++|+..|+++++..| ++..+..++.+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988 577777777665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=127.80 Aligned_cols=138 Identities=18% Similarity=0.237 Sum_probs=72.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~~l 189 (942)
....+..+|..++..|++++|+..|++++...|.+. .+++.+|.++...|+|++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678889999999999999999999999988766 266666666666666666666666666
Q ss_pred HhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.+... .+. .+++...|.+++...|.++
T Consensus 258 ~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 258 TEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCCC
Confidence 666666 55566666666666666666666666666666666666666655332 222 5555666666666666544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-12 Score=138.13 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHH
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 207 (942)
+.++..+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 34566677888888999999999999999999999999999999999999999999999999999888 77788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhccHHhHHHHHHHHH-----------HHHHhCCCC
Q 002286 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQ-----------RAFEIYPYC 267 (942)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~A~~~~~-----------~~~~~~p~~ 267 (942)
..+|++++|+..|+++++.+|++..++..++.+ +...|+ +++|+..++ +++...|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999888888888877 677777 888888888 666665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=131.84 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred HHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCC
Q 002286 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (942)
Q Consensus 630 ~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 709 (942)
++..+|.. |+.. |++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|
T Consensus 8 ~~~~lg~~-~~~~------------g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--- 71 (477)
T 1wao_1 8 ELKTQAND-YFKA------------KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--- 71 (477)
T ss_dssp TSSSSSSS-TTTT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---
T ss_pred HHHHHHHH-HHHh------------CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---
Confidence 34456666 6666 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH--HHHcccHHHHHHHHH-----------HH
Q 002286 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART--HYEAEQWQDCKKSLL-----------RA 776 (942)
Q Consensus 710 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~a 776 (942)
.++.+++++|.+|..+|++++|+..|+++++..| .++.++..++.+ +...|++++|++.++ ++
T Consensus 72 --~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 147 (477)
T 1wao_1 72 --KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES 147 (477)
T ss_dssp --TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSS
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhh
Confidence 7899999999999999999999999999999954 445567777777 889999999999999 88
Q ss_pred HHhCCCChhhHhhH
Q 002286 777 IHLAPSNYTLRFDA 790 (942)
Q Consensus 777 l~~~p~~~~~~~~l 790 (942)
+...|+....+++.
T Consensus 148 l~~~~~~~~~~~~~ 161 (477)
T 1wao_1 148 MTIEDEYSGPKLED 161 (477)
T ss_dssp CCCCTTCCSCCCGG
T ss_pred cccccccccccccc
Confidence 88888765544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-11 Score=103.56 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHH
Q 002286 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221 (942)
Q Consensus 142 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 221 (942)
+.+++|+..+++++..+|+++.+|..+|.++...++++.+.... +.+++|+..|+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~~le 70 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHHHHH
Confidence 44556666666666666666666666666655555543222211 01457777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcc--------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 222 RALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 222 ~al~~~p~~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
++++++|++..+++.+|.+|...|. .+++++|+.+|+++++++|++......+..+
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777777776642 1349999999999999999998777665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.5e-11 Score=103.83 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhc---CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 108 EHFILATQYYNKASRI---DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
|++++|+..|++++.. +|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555777777777777 4777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCC
Q 002286 185 YKRALQVHPSC 195 (942)
Q Consensus 185 ~~~~l~~~p~~ 195 (942)
|++++...|++
T Consensus 84 ~~~al~~~p~~ 94 (117)
T 3k9i_A 84 LLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCc
Confidence 77777777777
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-11 Score=102.71 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHH
Q 002286 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (942)
Q Consensus 140 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (942)
..|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.++..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 467888899999999888 57788888999999999999999999999999998888 77788889999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHH
Q 002286 217 RQAFQRALQLDPENVEALV 235 (942)
Q Consensus 217 ~~~~~~al~~~p~~~~~~~ 235 (942)
+..|++++...|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999888888876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-11 Score=124.61 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCc-----------------chHHHHHHHHHHcC
Q 002286 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP-----------------STWVGKGQLLLAKG 142 (942)
Q Consensus 80 ~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~~a~~~~~~g 142 (942)
.+....+..+|..++..|+.. +|+..|.+++...|.+. .+++.+|.++...|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~-----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLE-----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCH-----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666778888888777776 99999999999999876 48999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH-HHHcCCHHHHHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQ 221 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~-~~~~g~~~~A~~~~~ 221 (942)
++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..++..++.+ ....+..+.+...|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 6778888888 445678889999999
Q ss_pred HHHhhCCCCHH
Q 002286 222 RALQLDPENVE 232 (942)
Q Consensus 222 ~al~~~p~~~~ 232 (942)
+++...|+++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999997653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-10 Score=119.72 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLE----------------ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
.+..+|..++..|++++|+..|++++. .+|.+..++..+|.+++..|+|++|+..+++++..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 477788888888888888888888887 5555666777777777777777777777777777777
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++
T Consensus 305 ~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 SN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 66 56667777777777777777777777777777777777777766666655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-10 Score=103.97 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=119.2
Q ss_pred hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002286 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQV 701 (942)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (942)
..++..+|.+ |... |++++|+..|++++...|.. ..++..+|.++...|++++|+..++++
T Consensus 9 ~~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466778888 8888 99999999999999876542 247889999999999999999999999
Q ss_pred HHHhcCCCCC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 002286 702 QEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRA 776 (942)
Q Consensus 702 ~~~~p~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a 776 (942)
++..+....+ ....++.++|.++...|++++|+..+++++...+...+ +.++..+|.++...|++++|..+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9987532111 13668999999999999999999999999987654444 678899999999999999999999999
Q ss_pred HHhCCC
Q 002286 777 IHLAPS 782 (942)
Q Consensus 777 l~~~p~ 782 (942)
+.+...
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.7e-10 Score=116.74 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------hCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQ----------------VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (942)
...+..+|..++..|+|++|+..|++++. .+|.. ..++..+|.++..+|++++|+..++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 55665 67789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002286 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (942)
Q Consensus 226 ~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~ 289 (942)
++|+++.+++.+|.++...|+ +++|+..|+++++++|++..++..++.++...++++++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999998888888777766544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=100.29 Aligned_cols=133 Identities=23% Similarity=0.287 Sum_probs=79.6
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQA 412 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~ 412 (942)
+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4444444444444444444444444432211 1355566666666666666666666666543321 455
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
+..+|.++ ..|++++|+..+++++...+..+... ...++..+|.++...|++++|+.++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66667777 77777777777777776665543211 1356777888888888888888888888764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=92.12 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 002286 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (942)
Q Consensus 659 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 738 (942)
.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| .++.+|+++|.++...|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467778888888888888888888888888888888888888888876 677888888888888888888888888
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcc
Q 002286 739 NCLRKFYYNTDAQILLYLARTHYEAE 764 (942)
Q Consensus 739 ~al~~~~~~~~~~~~~~l~~~~~~~g 764 (942)
+++...|...+......+...+...|
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 88887665555555555554444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.1e-09 Score=88.76 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 002286 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (942)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 191 (942)
.|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777888888888888888888888888888888888888888888878888888888888888888888887777
Q ss_pred CCCC
Q 002286 192 HPSC 195 (942)
Q Consensus 192 ~p~~ 195 (942)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.87 E-value=9.1e-09 Score=85.88 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=63.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC
Q 002286 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (942)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (942)
.+|+++.+++.+|.++...|++++|+..|+++++..| .++.+|+++|.+|...|++++|+..|++++...+...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3577777888888888888888888888888888776 66777888888888888888888888888777655555
Q ss_pred HHHHHHHHHHHHHcc
Q 002286 750 AQILLYLARTHYEAE 764 (942)
Q Consensus 750 ~~~~~~l~~~~~~~g 764 (942)
......+...+...+
T Consensus 77 ~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 77 QKDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcc
Confidence 555555555444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=82.59 Aligned_cols=80 Identities=29% Similarity=0.526 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
+.++..+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3344444444444444444444444444444444 334444444454555555555555555554554444444444444
Q ss_pred H
Q 002286 242 L 242 (942)
Q Consensus 242 ~ 242 (942)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=81.96 Aligned_cols=85 Identities=22% Similarity=0.522 Sum_probs=66.0
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHH
Q 002286 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (942)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 205 (942)
.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++ ..++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Confidence 3466777788888888888888888888888888888888888888888888888888888888888877 666777777
Q ss_pred HHHHcC
Q 002286 206 CRYKLG 211 (942)
Q Consensus 206 ~~~~~g 211 (942)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-08 Score=85.85 Aligned_cols=120 Identities=14% Similarity=0.072 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 730 (942)
+++++|+.+|+++.+..+.... +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 8999999999999998744443 999999999999999999999986 468999999999999 8999
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCChhhHhhHH
Q 002286 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (942)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 791 (942)
++|+.+|+++.+. .++.+.+.||.+|.. .+++++|+.+|+++.+.. ++...++++
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999985 568999999999999 899999999999999884 555666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-09 Score=91.72 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
.+++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3444444445455555555555555544444444444444444444444444444444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-07 Score=101.96 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=146.6
Q ss_pred HHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC-CC
Q 002286 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS 673 (942)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~ 673 (942)
.+..+...+.+.|+.++|...|+++...+-.++..++..+... |........ ....+..++|.++|+++.... +.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~~~~~---~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAEAATE---SSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCCCCSS---SSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCCchhh---hhhcchHHHHHHHHHHHHHhCCCC
Confidence 3455567778888888888888888887766677777766655 433211000 001278999999999998876 34
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 753 (942)
|..+++.+...+.+.|++++|..+|.++.+..- ..+..+|..+...|.+.|+.++|.++|+.+.+. +-.++..++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 888999999999999999999999999988652 146788999999999999999999999999875 467789999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhH
Q 002286 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (942)
Q Consensus 754 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 790 (942)
..|..++.+.|+.++|.++++++....-......|++
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999999999999999887643333333443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.3e-09 Score=88.69 Aligned_cols=96 Identities=8% Similarity=-0.080 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC------hhHHH
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALS 597 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~ 597 (942)
....++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred HhhhhhccccchHHHHHHHHHh
Q 002286 598 MLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
.+|.++...|+++.|+..++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766644
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=84.14 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
+|+++.+++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.+.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56666777777777777777777777777777777777777777777777777777777777777666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=83.26 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-PALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHH--------
Confidence 45666666666666666666666666666666 66666666666666666666666666666666 332211
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 002286 211 GQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~ 229 (942)
+.+.+++..|++++..+|+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 3445555555555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-06 Score=97.03 Aligned_cols=183 Identities=11% Similarity=0.005 Sum_probs=146.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhhc-CCChhHHHHhhhhhccc---------cchHHHHHHHHHhhccCCCCchhHH
Q 002286 562 YLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYAT 631 (942)
Q Consensus 562 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~ 631 (942)
+..+...+.+.|+.++|+.+|+++.... +.+..+|..+..++... +..+.|...|..+...+-.++..++
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4555566777888888888888877654 33455566555555433 4578899999999998877789999
Q ss_pred HhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCC
Q 002286 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 710 (942)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 710 (942)
..+... |... |++++|..+|+++.... +.+...++.+...|.+.|+.++|..+|..+.+..-
T Consensus 109 n~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~---- 171 (501)
T 4g26_A 109 TNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV---- 171 (501)
T ss_dssp HHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----
Confidence 999999 9998 99999999999998875 44788999999999999999999999999998763
Q ss_pred CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 002286 711 VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (942)
Q Consensus 711 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~ 762 (942)
..+...|..+..++.+.|+.++|.++++++-... ..++..++..+-..+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 2477889999999999999999999999987753 45566666666555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-07 Score=80.77 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~ 182 (942)
++++++|+.+|.++.+.. ++.+. +|.+|...+.+++|+..|+++... .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467889999999998876 44455 999999989999999999999876 578999999999988 88999999
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
.+|+++.+. .+ +...+.+|.+|.. .+++++|+.+|+++.+.. ++.+...|+
T Consensus 82 ~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999886 33 5678889999998 889999999999998863 455555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-08 Score=82.10 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchh-hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 166 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
+.+|.+++..|++++|+..|++++..+|++ .. +++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 567888999999999999999999999998 66 88999999999999999999999999999998887643
Q ss_pred ccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 245 NEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 245 ~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
+. +.+++..|.++...+|+++
T Consensus 75 ~~---~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KM---VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HH---HHHHHHHHCCTTHHHHCCS
T ss_pred HH---HHHHHHHHHHHhccCcccc
Confidence 22 7778888887777766553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-07 Score=91.71 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=109.5
Q ss_pred HhhcCCCCcchH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHH---
Q 002286 120 ASRIDMHEPSTW--VGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY----SDSLEFYKR--- 187 (942)
Q Consensus 120 a~~~~p~~~~~~--~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----~~A~~~~~~--- 187 (942)
+....|.++.+| +.+|..++..++ +.+|+.+|+++++.+|+++.++..++.++.....+ ......+..
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334457766655 567888887765 48999999999999999999999888887532111 111111111
Q ss_pred ---HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 188 ---ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 188 ---~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
++..+|.+ +.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|+ +++|+..|.+++.++
T Consensus 266 a~~a~~~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 NIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFNLR 340 (372)
T ss_dssp HHHTCGGGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHhcccCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 12345666 677778888888889999999999999999974 7788899999999999 999999999999999
Q ss_pred CCCH
Q 002286 265 PYCA 268 (942)
Q Consensus 265 p~~~ 268 (942)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 9776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-07 Score=93.75 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=110.3
Q ss_pred hHHHHHHHhccCChHHH--HHHHHHHHHcCCH---HHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhh
Q 002286 27 SDILDILKAEQAPLDLW--LIIAREYFKQGKV---EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101 (942)
Q Consensus 27 ~~~~~~l~~~~~~~~~~--~~~a~~y~~~g~~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~ 101 (942)
.+...+....|.++++| +..|..|+.++.. .+|+.+|++++..+|+. ..++..++.+|........
T Consensus 181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~---------a~A~A~la~a~~~~~~~~~ 251 (372)
T 3ly7_A 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF---------TYARAEKALVDIVRHSQHP 251 (372)
T ss_dssp HHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHhccCC
Confidence 33444445566666655 6778888887654 88999999999888743 3456666777663322211
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH
Q 002286 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (942)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A 181 (942)
...........|... ..++..+|.++.++..++..+...|++++|+..+++++.++| +..++..+|.++...|++++|
T Consensus 252 ~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 252 LDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp CCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 111111222333332 134566788888888888888888999999999999998886 467788888888889999999
Q ss_pred HHHHHHHHHhCCCC
Q 002286 182 LEFYKRALQVHPSC 195 (942)
Q Consensus 182 ~~~~~~~l~~~p~~ 195 (942)
+..|.+++.++|..
T Consensus 330 ~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 330 ADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHSCSH
T ss_pred HHHHHHHHhcCCCc
Confidence 99999999998877
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.7e-06 Score=79.83 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=91.3
Q ss_pred CCCcchhHHHHHHHHHhh-----cC------CHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHc-----CChhHHHHH
Q 002286 520 LPWNKVTVLFNLARLLEQ-----IH------DTVAASVLYRLILFKYQDY--VDAYLRLAAIAKAR-----NNLQLSIEL 581 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~-----~~~~~A~~~ 581 (942)
..|.++..++..|.+... .| ....|...++++++++|+. ..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456788888877766532 13 3578899999999999994 66999999999995 999999999
Q ss_pred HHHHHhhcCCC-hhHHHHhhhhhcc-ccchHHHHHHHHHhhccCCC
Q 002286 582 VNEALKVNGKY-PNALSMLGDLELK-NDDWVKAKETFRAASDATDG 625 (942)
Q Consensus 582 ~~~~l~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 625 (942)
|++++.++|+. ..+++.+|..++. .|+++.|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 9999999999988 49999999999999998776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-07 Score=75.75 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhh
Q 002286 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 786 (942)
-++.-.+.+|..++..|+|..|+.+|+.+++..+.. ..+.++..||.++++.|+++.|+..+++++.+.|+++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 356778999999999999999999999999987432 238899999999999999999999999999999999999
Q ss_pred HhhHHHHHHHH
Q 002286 787 RFDAGVAMQKF 797 (942)
Q Consensus 787 ~~~la~~~~~~ 797 (942)
..|++. +...
T Consensus 83 ~~n~~~-~~~~ 92 (104)
T 2v5f_A 83 NGNLKY-FEYI 92 (104)
T ss_dssp HHHHHH-HHHH
T ss_pred HhhHHH-HHHH
Confidence 999986 4443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-07 Score=98.93 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=68.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhhh
Q 002286 277 HFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYY 346 (942)
Q Consensus 277 ~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~ 346 (942)
.+..+|+|++|+.++++++.. .+.+|....++.++|.+|..+|+|++|..++++++... +.+|.....+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344566666666666666532 33445555566666666666666666666666665421 23444445555
Q ss_pred cHHHHHHHcCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002286 347 GLGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403 (942)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l 403 (942)
+||.+|..+|++++|+.+|++++.+ .|++ .+...+++.++..++.+++|...|.++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666655555543 2333 2233445555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=74.31 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=57.4
Q ss_pred CCCCcchHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 002286 124 DMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 195 (942)
+|.++..+..+|.+++..++ .++|...|+++++.+|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888888888776655 6888888888888888888888888888888888888888888888887774
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-07 Score=96.26 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=99.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQA 412 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~ 412 (942)
+..+...|+|++|+..++++++. .|++ ..++.++|.+|..+|++++|..++++++.+ +|+....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34455678888888888888764 2333 457788888888888888888888888865 3455667
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPI---EVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
+.++|.+| .+|++++|...|++++.+....-.+..+ ++...++.++..++.+.+|...|.++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8999999999999999888776333333 6678889999999999999999999866
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-05 Score=78.50 Aligned_cols=193 Identities=13% Similarity=0.032 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------------------CChhHHHHHHHHHHhhcCCChhHHHHhhh
Q 002286 543 AASVLYRLILFKYQDYVDAYLRLAAIAKAR---------------------NNLQLSIELVNEALKVNGKYPNALSMLGD 601 (942)
Q Consensus 543 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------------------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 601 (942)
-.+.+++.++..+|++.......+..|..- .++..|..+|.++....-.-.... .-+.
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~-~~~~ 128 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETA-YPGF 128 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh-CccH
Confidence 445778888889999966555555443321 123345555555543210000000 0000
Q ss_pred h-hccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 002286 602 L-ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAA 678 (942)
Q Consensus 602 ~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~ 678 (942)
+ -+..++ ...+..++......+..+++..|.+ +.......+..+. .-+....|...++++++++|+ +..++
T Consensus 129 ~~~~~~~~----~~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg~~-Al~~l~~A~a~lerAleLDP~~~~GsA~ 202 (301)
T 3u64_A 129 TREVFSGD----EQRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLGSA-LPDTVHAAVMMLERACDLWPSYQEGAVW 202 (301)
T ss_dssp HHHHTSSC----HHHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTTSC-CHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHhcc----hhhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCChH-HHHhHHHHHHHHHHHHHhCCCcccCHHH
Confidence 0 112222 1234444554444477777766666 5443222111110 126677888888888888888 66688
Q ss_pred HHHHHHHHhc-----CCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh-cCHHHHHHHHHHHHhhhCC
Q 002286 679 NGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ-GNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 679 ~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 746 (942)
..+|.+|... |+.++|...|+++++.+|+ .++++++..|..++.. |+++.|...+++++...|.
T Consensus 203 ~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 203 NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 8888888774 7888888888888888762 2477777788777764 7788888888888776544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=76.51 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhC-CCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 144 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
...+.+.|...+..+|.+..+.+.+|.++.+.+ ++++++.+++.+++.+ |....+.++.+|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345556666666666666667777777776666 5556777777777666 533356667777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHH
Q 002286 220 FQRALQLDPENVEALVALAV 239 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~ 239 (942)
++++++.+|++..+....-.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHH
Confidence 77777777777666544433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-06 Score=70.11 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 158 DRDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 158 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
+|+++..+..+|.+++..++ .++|...+++++..+|++ +.+++.+|..++..|++++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888889999988876655 689999999999999998 7778888999999999999999999999888874
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-06 Score=73.19 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhcCChHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEAD-R-DNVPALLGQACVEFNRGRYSDS 181 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~g~~~~A 181 (942)
.+....+...|.+.+..+|.+..+.+..|.++...+ +.++++.+|+.+++.+ | .+.++++.+|..+++.|+|++|
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345567888888888889999999999999999998 6779999999999998 7 5689999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 002286 182 LEFYKRALQVHPSC 195 (942)
Q Consensus 182 ~~~~~~~l~~~p~~ 195 (942)
+.+++++++..|++
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999999998
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-05 Score=66.26 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC------CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHP------SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+.-.+.+|..++..|+|..|+.+|+.++...+ .....++..+|.|++++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 44566778888888888888888888877531 123567788888888888888888888888888888888766
Q ss_pred HHH
Q 002286 236 ALA 238 (942)
Q Consensus 236 ~l~ 238 (942)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=63.30 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhC-CCCchhhHhhHHHHHHHcCCHHHHHHH
Q 002286 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (942)
Q Consensus 144 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (942)
...+...|...+..++.+..+.+.+|+++.+..+... ++.+++.++..+ |.......+.+|..++++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666666666677777777777777665555 777777777665 433456677788888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHH
Q 002286 220 FQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 220 ~~~al~~~p~~~~~~~~l~~~ 240 (942)
++.+++..|+|..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 888888888877765544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.5e-05 Score=83.67 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=85.0
Q ss_pred HcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcC
Q 002286 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (942)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (942)
..|++++|+..+++++.... ......+|....++.++|.+|..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~-----------------------------------~~lg~~Hp~~a~~~~nLa~~y~~~g 354 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS-----------------------------------SVFEDSNVYMLHMMYQAMGVCLYMQ 354 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-----------------------------------TTBCTTSHHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHhh-----------------------------------CccChhchHHHHHHHHHHHHHHhhc
Confidence 56899999999999998421 1111256777889999999999999
Q ss_pred CHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----cCCChhHHHH
Q 002286 540 DTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (942)
Q Consensus 540 ~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~ 598 (942)
++++|+.++++++.. +|+....+.++|.+|..+|++++|..++++++.+ .|++|.+...
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999973 4555778999999999999999999999999886 4777765443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.95 E-value=5.6e-05 Score=63.22 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH---HHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcccHHH
Q 002286 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYYN-TDAQILLYLARTHYEAEQWQD 768 (942)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 768 (942)
.+...|.+....++ ..+++.+++||++...++... +|.+++..++.. .+ ..-..+|+||..+++.|+|.+
T Consensus 19 ~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 44455555555443 567888888888888777666 888888887752 01 236789999999999999999
Q ss_pred HHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 769 CKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 769 A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
|+++++.+++..|+|..+.--...+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998766544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.3e-05 Score=80.06 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=54.7
Q ss_pred cCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHH
Q 002286 355 LGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGE 418 (942)
Q Consensus 355 ~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~ 418 (942)
.|+|++|+..+++++.+ .|++ ..++.++|.+|..+|++++|+.++++++.+ +|+....+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666666653 2333 345566666666677777777766666654 2344455666677
Q ss_pred HH-hcCCHhHHHHHHHHHHHHHHHc
Q 002286 419 LL-ISSDTGAALDAFKTARTLLKKA 442 (942)
Q Consensus 419 ~~-~~~~~~~A~~~~~~a~~~~~~~ 442 (942)
+| .+|++++|+..|++++.+....
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHH
Confidence 77 7777777777777777766554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=79.17 Aligned_cols=106 Identities=5% Similarity=-0.089 Sum_probs=85.7
Q ss_pred HHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHh
Q 002286 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (942)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 536 (942)
-+...|++++|+..+++++.... ......+|....++.++|.+|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~-----------------------------------~~lg~~h~~~~~~~~~L~~~y~ 340 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNS-----------------------------------ERLPDINIYQLKVLDCAMDACI 340 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSS-----------------------------------CCCCTTSHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhcc-----------------------------------CcCCccchHHHHHHHHHHHHHH
Confidence 35578999999999999997421 1111256667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhh-----cCCChhHHH
Q 002286 537 QIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALS 597 (942)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~ 597 (942)
.+|++++|+.++++++.. +|+....++++|.+|..+|++++|..++++++.+ .|++|.+..
T Consensus 341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999999963 4455778999999999999999999999999876 477776543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=9.7e-05 Score=79.34 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=69.9
Q ss_pred HHHcCChHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFID 415 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~ 415 (942)
+...|++++|+..++++++. .|++ ..++.++|.+|..+|++++|+.++++++.+ +|+....+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44566777777777777653 2333 346677777777777777777777777754 2444556777
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVPI---EVLNNIGVIHF 459 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~ 459 (942)
+|.+| .+|++++|+.+|++++.+....-.+..+ .++.+++.+..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 77777 7788888888888887777665333333 34455555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00023 Score=62.32 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=76.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC---CC
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------VPALLGQACVEFNRGRYSDSLEFYKRALQVH---PS 194 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~ 194 (942)
...+++.....++..|.|+.|+-....++....++ ..++..+|.+++..|+|..|...|++++... |.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667777777888888877777765543222 2366777888888888888888888776542 11
Q ss_pred C---------------------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 195 C---------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 195 ~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
. ...+++.++.|+..+|++.+|+..++.+- ..-..+.....||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 1 12578889999999999999998877532 1224677777777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0018 Score=55.21 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=32.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
..++.++|+..|+.++......+..|...|....++|+ ...|...+.+++...|...
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBCH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCcH
Confidence 33555566666666555555555555555555555555 5566666666665555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00097 Score=56.83 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=93.3
Q ss_pred cCCCCcchHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEV------EQASSAFKIVLEADRDN--------VPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
..|++++.|.......-..|+. ++-++.|++++..-|.. +..|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4799999999999999999999 99999999999887743 3456666654 5669999999999999
Q ss_pred HHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
+...... +.+|+..|..-.+.|+...|+..+.+++...|...+.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 9987776 8899999999999999999999999999999986554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0041 Score=52.82 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=67.8
Q ss_pred CchhHHHHHHHHHHHhcCH---HHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 712 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
..+.+.+++||++....+. .++|.+++..++. .+. .-..+|+||..+++.|+|.+|+++.+.+++..|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 5789999999999988654 4799999999886 333 378999999999999999999999999999999998766
Q ss_pred hhHHHH
Q 002286 788 FDAGVA 793 (942)
Q Consensus 788 ~~la~~ 793 (942)
--...+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=55.20 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHHhcCH---HHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 712 QMPDVWINLAHVYFAQGNF---ALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 712 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
..+.+.+++||++.+..+. .++|.+++..++. .+. .-..+++||.++++.|+|++|+++.+.+++..|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 4689999999999988654 5799999999886 332 378999999999999999999999999999999998766
Q ss_pred hhHHHH
Q 002286 788 FDAGVA 793 (942)
Q Consensus 788 ~~la~~ 793 (942)
--...|
T Consensus 116 ~Lk~~I 121 (134)
T 3o48_A 116 ALKSMV 121 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.34 E-value=0.39 Score=55.41 Aligned_cols=412 Identities=11% Similarity=0.019 Sum_probs=190.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHH--HHHHHHHHHHHHHHHcchhhhhhh-hhHHHHHHHHHHHHHH
Q 002286 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY--ERIAILNALGVYYTYLGKIETKQR-EKEEHFILATQYYNKA 120 (942)
Q Consensus 44 ~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~~~~~-~~~~~~~~A~~~~~~a 120 (942)
-.+-...++.|.+.+|+.++-++...+.-..+.+... +....+..+..+.+.....-.... -+..-+.-+..+|.+.
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~ 228 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNM 228 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhC
Confidence 3444556788999999999988876554333332100 000112222222222222111111 1344555666666653
Q ss_pred hhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh--HH-HHHH------HHHHHHh
Q 002286 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SD-SLEF------YKRALQV 191 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~--~~-A~~~------~~~~l~~ 191 (942)
+ ..-|+....+++..++.+.+.+.|.+.+. .++...-+.+|..+.+.+.- -. -+.. +.+...+
T Consensus 229 ----~--~~dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~I 300 (963)
T 4ady_A 229 ----P--NCDYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNI 300 (963)
T ss_dssp ----S--SCCHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ----C--chhHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHH
Confidence 1 22577888999999999999999999874 45666667777777664431 11 1111 1122222
Q ss_pred CCCCchhhHhhHHHHHHHcCCHHH-HHHHHHHHHhhCCCCHHHH--HHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 192 HPSCPGAIRLGIGLCRYKLGQLGK-ARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
-.+. ....+.+-..+ ..+..+- -.+.++..+ ++.+.... ...+..+.+.|-. -+.-+......+-...+..
T Consensus 301 Lsg~-~~~~Lyl~FL~-~~n~~d~~~l~~~K~~l--d~r~s~~~~A~~f~Naf~naG~~--~D~~l~~~~~Wl~k~~~~~ 374 (963)
T 4ady_A 301 LSGL-PTCDYYNTFLL-NNKNIDIGLLNKSKSSL--DGKFSLFHTAVSVANGFMHAGTT--DNSFIKANLPWLGKAQNWA 374 (963)
T ss_dssp TTSH-HHHHHHHHHHH-HHCCCCHHHHHHHHHHS--CTTSHHHHHHHHHHHHHHTTTTC--CCHHHHHCHHHHHHCCTHH
T ss_pred hCCC-ChHHHHHHHHH-hccccchhhHHHHHhhh--cchhhHHHHHHHHHHHHHhCCCC--cchhhhcchhhhhccchHH
Confidence 1111 00111111111 1111111 112223222 23332211 1222333333321 0111111222333333333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-------CC
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-------PH 339 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~ 339 (942)
..-...+.-....|+.++++..+...+... ........+.+.+|.++...+ .+++.++...+..... ..
T Consensus 375 k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHH
Confidence 333333333445677777777777665421 111223455666666665555 3577777766642110 00
Q ss_pred CchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 002286 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (942)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 417 (942)
....+-+++|.++.-.++ +++...+..++..+.... .+-..+|.++.-.|+.+-....+..+.+...+...-...+|
T Consensus 453 ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalg 531 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 111344566666655554 456666666665332211 24456677777777766555555555543333322223333
Q ss_pred HHH-hcCCHhHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 002286 418 ELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (942)
Q Consensus 418 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 476 (942)
..+ ..|+.+.+-...+..... .++ ........+|..|...|+...-...+..+..
T Consensus 532 LGll~~g~~e~~~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhhhCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 333 455555554444433221 000 0012334456666677775444445555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0053 Score=52.11 Aligned_cols=81 Identities=10% Similarity=0.059 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 159 RDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 159 p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+.++.+.+.+|+++....+ ..+++.+++..+...|....+..+.+|..++++|+|++|+.+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3456677777777776654 3467777777777777666677777888888888888888888888888888777655
Q ss_pred HHHH
Q 002286 236 ALAV 239 (942)
Q Consensus 236 ~l~~ 239 (942)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0026 Score=53.23 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 237 (942)
.+.+.+.+|+++.+..+ ...++.+++..+..+|....+.++.+|..++++|+|++|+.+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 56777777777777654 456788888888877766677788888888888888888888888888888888776655
Q ss_pred HHHH
Q 002286 238 AVMD 241 (942)
Q Consensus 238 ~~~~ 241 (942)
..+.
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00088 Score=58.68 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHhcCCchHHHHHHHHHHHHhcC---CC-------------
Q 002286 655 THLEKAKELYTRVIVQHTSNLY---------AANGAGVVLAEKGQFDVSKDLFTQVQEAASG---SV------------- 709 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~---------a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~------------- 709 (942)
+.|+.|+-....++....+++. ++..+|.++...|+|..|...|++++..... ..
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 7888898888887765433332 6778899999999999999999998654321 00
Q ss_pred ----CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 002286 710 ----FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (942)
Q Consensus 710 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~ 760 (942)
.+.+.++.+.++.||..+|++.+|+..++.+-.+ ...+.+...||+.|
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---QRTPKINMLLANLY 165 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHHC
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---hcCHHHHHHHHHHh
Confidence 1112356677777777777777777775443222 23466777777655
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.064 Score=55.74 Aligned_cols=295 Identities=11% Similarity=0.073 Sum_probs=171.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHH-cCChhHHHHHHHHHHhhcCCChhHH-
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD-----AYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNAL- 596 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~- 596 (942)
...+.+.+|.+|...|+.++-..++.......+..+. ....+...+.. .+..+.-++.+..+++-..+.-..|
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999988888776544333322 22233333333 3445555566666655433232222
Q ss_pred -----HHhhhhhccccchHHHHHHHHHhhccCCCC-ch----hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHH
Q 002286 597 -----SMLGDLELKNDDWVKAKETFRAASDATDGK-DS----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (942)
Q Consensus 597 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (942)
..+|.+|+..|++.+|...+.++...-... +. ..+.....+ |... +++.++...|.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~ 164 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHH
Confidence 378999999999999999998887733221 11 122233444 5555 888888888888
Q ss_pred HHhcC---CCCHH----HHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 002286 667 VIVQH---TSNLY----AANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (942)
Q Consensus 667 ~l~~~---p~~~~----a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 738 (942)
+.... +.++. ....-|.++. ..++|..|...|-.+.+.+.....+....+...++-|-...++..+--....
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~ 244 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVS 244 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 76542 12222 2334488888 8999999999999998777533222222344445555555555322212111
Q ss_pred -HHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHHhhhhh-----cCCCHHHH
Q 002286 739 -NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK-----TRRTADEV 812 (942)
Q Consensus 739 -~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~l~~-----~~~~~~~~ 812 (942)
.....+ ..++...+..+..+ +..|++.+....+...-.....|+.+.-|+..+++......+.+ ..-+++.+
T Consensus 245 ~~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 245 GKLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp SHHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred ccccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 111222 23334445555555 44667777666665544444557777666666666655544332 33445555
Q ss_pred HHHHH-HHHHHHHHHHHHhhCC
Q 002286 813 RSTVA-ELENAVRVFSHLSAAS 833 (942)
Q Consensus 813 ~~a~~-~l~~a~~~~~~l~~~~ 833 (942)
-..++ ..+++...+.++..++
T Consensus 323 A~~l~ls~~evE~~L~~lI~dg 344 (394)
T 3txn_A 323 AESIQLPMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHCcCHHHHHHHHHHHHHCC
Confidence 54421 3456677777776654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.34 Score=50.38 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+.+|..|.++|+.++...++......-. .++ +..-..+...|...+....... +..++--...++.+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~a 89 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS--SIS--KAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG--GSC--HHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--Hhc--hHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHHH
Confidence 3789999999999999999999998754321 111 1122334445555554443222 23333333333333
Q ss_pred hhcCCCCcchHH------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 121 SRIDMHEPSTWV------GKGQLLLAKGEVEQASSAFKIVLEADRD--N----VPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 121 ~~~~p~~~~~~~------~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
- +.-..|+ .+|..|+..|+|.+|...+.++.+.-.. + .+.+.....++...|++.++...|.++
T Consensus 90 ~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 90 K----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp H----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3 2223342 6899999999999999999998864221 1 456778888999999999999999988
Q ss_pred HHhC---CCC---chhhHhhHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 002286 189 LQVH---PSC---PGAIRLGIGLCRY-KLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 189 l~~~---p~~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 227 (942)
.... +.+ .+.+...-|..+. ..++|..|...|-.+++..
T Consensus 166 ~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 166 RTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 7653 111 2445666788888 8999999999999987543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.27 Score=42.57 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHH--h------------
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I------------ 371 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~------------ 371 (942)
+.-..++.+++-.|.|..++-++. ..+...+.+..+.+|...++|..|+.++++++. .
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 445556666666777766665552 234445555666777777777777777777762 1
Q ss_pred ---CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 002286 372 ---YPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (942)
Q Consensus 372 ---~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 412 (942)
+|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 244444 55678888899999999999999888888765444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.68 E-value=1.4 Score=50.91 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.2
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 002286 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (942)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 245 (942)
|..+..|..++++.+.+.+.|.+++. .++...-+.++..+...+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56788999999999999999999874 456666666776665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.026 Score=65.03 Aligned_cols=114 Identities=9% Similarity=-0.082 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHH
Q 002286 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (942)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 753 (942)
....++.+...|++.|+.++|..+|..+.+..... ...+...|..+...|++.|+.++|.++|+++... +-.+|..++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 44568889999999999999999998876431000 0146788999999999999999999999998775 367888999
Q ss_pred HHHHHHHHHcccH-HHHHHHHHHHHHhCCCChhhHhh
Q 002286 754 LYLARTHYEAEQW-QDCKKSLLRAIHLAPSNYTLRFD 789 (942)
Q Consensus 754 ~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 789 (942)
..+..++++.|+. ++|.+.|+++....-....+.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 9999999999985 78889999988875444444444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.87 Score=50.76 Aligned_cols=144 Identities=8% Similarity=-0.066 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHH
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a 120 (942)
...+.-|...++.|++..+..+...+.. .|.. ..+.+..+..+... .....+...
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l~~-~pL~-------------~yl~y~~l~~~l~~-----------~~~~ev~~F 61 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKD-YPLY-------------PYLEYRQITDDLMN-----------QPAVTVTNF 61 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTT-STTH-------------HHHHHHHHHHTGGG-----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcC-CCcH-------------HHHHHHHHHhCccc-----------CCHHHHHHH
Confidence 3467788889999999999998776532 3311 11222222222111 011234445
Q ss_pred hhcCCCCcchHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch
Q 002286 121 SRIDMHEPSTWVGKGQL---LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (942)
Q Consensus 121 ~~~~p~~~~~~~~~a~~---~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 197 (942)
+...|+.|..-..+... +...+++..-+.++.. .|.+...-...+......|+-.+|......+....... +
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p 136 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-P 136 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-C
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-c
Confidence 56678877665554433 3446677766664443 37777777777777888899888888777776655444 2
Q ss_pred hhHhhHHHHHHHcCCHH
Q 002286 198 AIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~ 214 (942)
...-.+-..+...|...
T Consensus 137 ~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQD 153 (618)
T ss_dssp THHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 32333444444444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.75 Score=52.21 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHH
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA---KGEVEQASSAFKIVLEA--------DRDN----------VPALLGQA 169 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~--------~p~~----------~~~~~~~a 169 (942)
+.|+..+++....+|... .++..+.+... ..+--+|+..+.+.++. .+.+ ...+...+
T Consensus 266 ~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 468888888888777543 23333322221 12345566666666532 2222 23455667
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002286 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (942)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (942)
..+..+|+|+-|+.+.++++...|.. -..|+.++.||..+|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 77788899999999999999999988 777888999999999999998777654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.054 Score=46.74 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhH
Q 002286 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (942)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 203 (942)
-|..+...+.++.+++-.|.|.+|+-.+. .-+.+.+.+..+.|+...++|..|+..++.++.-.-+..+++-..+
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 35666788889999999999999887664 3345788888999999999999999999999943221111110000
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 270 (942)
- ..-.+|.+.+. +..+|.+....|+ .++|+..+...+..+|-.+.+
T Consensus 104 ~------------------~ffvd~~DkEfFy~l~a~lltq~g~---r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 104 Q------------------EMFVDPGDEEFFESLLGDLCTLSGY---REEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp H------------------TTSCCTTCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHHHH
T ss_pred c------------------eeeeccchHHHHHHHHHHHHHHhcC---HHHhhhHhhhhcCCccccchH
Confidence 0 01134555544 3345566666666 666666666666666655533
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.043 Score=63.31 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002286 655 THLEKAKELYTRV 667 (942)
Q Consensus 655 ~~~~~A~~~~~~~ 667 (942)
|+.++|.++|+++
T Consensus 179 G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 179 GAFKELVYVLFMV 191 (1134)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.1 Score=55.81 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCH----
Q 002286 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA---- 750 (942)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 750 (942)
..+...+|..|...|+++.|.+.|.++.+...++. ...++++....++...+++..+...+.++-......+++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34677899999999999999999999999875432 457889999999999999999999999998876655553
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
....+.|.++...++|.+|...|..++.-........+
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 34556678888899999999999888877665433333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.072 Score=60.41 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
.+...+..+...|+++-|+.+.++++...|.....|+.++.+|...|+|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 56667888999999999999999999999999999999999999999999999776654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=8.3 Score=42.95 Aligned_cols=212 Identities=9% Similarity=-0.048 Sum_probs=119.7
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHh
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 421 (942)
...+.......+.+.|...+.......+-+.. ....++.-....+...++...+.+.....+++.......+..+.
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHH
Confidence 33445555666889999999887654433322 22233333334453557777777766554444333333334447
Q ss_pred cCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHh
Q 002286 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (942)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (942)
.|++..|...+..+.... .......+-+|..+...|+.++|..+|..+......-+ ....
T Consensus 298 ~~d~~~a~~~~~~l~~~~-----~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg-------------~lAa-- 357 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEA-----KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYP-------------MVAA-- 357 (618)
T ss_dssp HTCHHHHHHHHHHSCTTG-----GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHH-------------HHHH--
T ss_pred CCCHHHHHHHHHHccccc-----cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHH-------------HHHH--
Confidence 799999999887653311 12467788899999999999999999999876311000 0000
Q ss_pred hhhhhhhhhhccCCCCCCCCCc---chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHH
Q 002286 502 FKDMQLFHRFENDGNHVELPWN---KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (942)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A 578 (942)
..... .............. ........+..+...|....|...+..++...+ ......++.+....|.+..+
T Consensus 358 -~~Lg~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 358 -QRIGE--EYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp -HHTTC--CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHH
T ss_pred -HHcCC--CCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHH
Confidence 00000 00000000000000 111234556677788888888888777665422 34455667777778887777
Q ss_pred HHHH
Q 002286 579 IELV 582 (942)
Q Consensus 579 ~~~~ 582 (942)
+...
T Consensus 433 v~~~ 436 (618)
T 1qsa_A 433 VQAT 436 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.28 E-value=3.6 Score=48.47 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCH
Q 002286 135 GQLLLAKGEVEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (942)
Q Consensus 135 a~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 213 (942)
.......|++++|.. ++.. -| +...+...+..+...|.++.|+...+ + +...+ ......|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~-~~~~f---~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------D-QDQKF---ELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------C-HHHHH---HHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------C-cchhe---ehhhhcCCH
Confidence 344566788888866 4411 11 01222455566677777777776552 2 22222 234567888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+.|.+..+ ..++...|..+|..++..++ ++.|..+|.++
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~~---~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRFN---FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcCC---HHHHHHHHHHc
Confidence 88887643 33567788888888888888 88888777754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.60 E-value=2.5 Score=45.22 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC----cHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCC-
Q 002286 376 CETLKALGHIYVQLGQIEKAQELLRKAAKID--PR----DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP- 447 (942)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~- 447 (942)
......|+.+|...|++.+|...+..+..-. .. -...+.....++ ..+|+..|...+.++.........+..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3455677888888888888888887765321 11 145666677777 888999998888887554333222211
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 002286 448 -IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (942)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 477 (942)
...+...|.++...++|.+|-.+|..+...
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256677788999999999999999998874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.41 E-value=2.4 Score=50.07 Aligned_cols=75 Identities=21% Similarity=0.132 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
..++..+...|.++.|+...+... .. .......|+++.|.+..+. .++...|..+|..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHH
Confidence 455556666677666665442111 11 2344567777777776432 3456777778888888
Q ss_pred cCCHHHHHHHHHHH
Q 002286 389 LGQIEKAQELLRKA 402 (942)
Q Consensus 389 ~g~~~~A~~~~~~~ 402 (942)
.|+++.|..+|.++
T Consensus 694 ~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 694 RFNFKLAIEAFTNA 707 (814)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc
Confidence 88888887777765
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.31 E-value=1.5 Score=42.11 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=26.3
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002286 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (942)
Q Consensus 173 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (942)
++.|+.++|+......++.+|.+ ...+..+...+.-.|+++.|...++.+.+++|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34444444444444444444444 444444444444444444444444444444444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.48 Score=45.44 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~ 186 (942)
.+.+++|+......++.+|.|......+...++-.|++++|...++.+.+++|.....-..+-.+ -.|...=.
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~R~ 82 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQARK 82 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999764332111110 01111111
Q ss_pred HHHHh--CC---CCchh--hHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 187 RALQV--HP---SCPGA--IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 187 ~~l~~--~p---~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.++.- .| ..++. ..+.-+......|+.++|...-..+++.-|..
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22221 12 22222 12334555666799999999999999887653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.57 Score=50.04 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---DNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
..+++.+..+.+-......-..++..+|..++..|++++|.++|.++..... .-...++....++...+++..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444555444432222333456889999999999999999999999876532 2367888899999999999999999
Q ss_pred HHHHHHhCCCC-----chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 185 YKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 185 ~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
+.++....... ........|..++..++|..|...|-.++...
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99987653221 12234456777778889999998888877654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.42 Score=50.93 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHhcCCchHHHH----------HHHHHHHHh-cCCCCCC
Q 002286 655 THLEKAKELYTRVIV-----------QHTSNLYAANGAGVVLAEKGQFDVSKD----------LFTQVQEAA-SGSVFVQ 712 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~-----------~~p~~~~a~~~la~~~~~~g~~~~A~~----------~~~~~~~~~-p~~~~~~ 712 (942)
+++++|.++-...+. +|+-+.-.|+.++.++...|+...... .+-.+.... .......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 778887777655441 123334455555666666676655322 222222222 1111113
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC--CC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCCh
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 784 (942)
...++..+-+.|...+.|+.|..+..++. ||.+ ++ ...++++|+++.-.++|.+|.+.+..|+...|.+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35567777899999999999999988874 5543 22 56678899999999999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.29 E-value=2.2 Score=38.16 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=19.6
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002286 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (942)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (942)
..|+++.|.+..+.+ ++...|..+|......|+++-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444443332 2344444444444444444444444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.14 E-value=14 Score=39.34 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC---CCchhhhhcHHHHHHHcCChHHHHHHHHHHHH---hCCCc--
Q 002286 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE---IYPDN-- 375 (942)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~-- 375 (942)
.......++.++...|++.+|...+.......... ......+.....++...+++..|...+.++.. ..+..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 34556778888888888888888888776432211 12234556667777777888888777777632 12222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002286 376 --CETLKALGHIYVQLGQIEKAQELLRKAAK 404 (942)
Q Consensus 376 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 404 (942)
...+...|.++...++|.+|..+|..++.
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 23455667777777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.87 E-value=6 Score=35.39 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 188 (942)
.+..|+++.|.+..+.. ++...|..+|......|+++-|..+|+++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34556666666655543 34556666666666666666666666553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.26 E-value=13 Score=37.22 Aligned_cols=218 Identities=14% Similarity=0.106 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhh----------------hhh
Q 002286 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK----------------QRE 105 (942)
Q Consensus 42 ~~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~----------------~~~ 105 (942)
.+-+++.=|.++++|++|+.++-.+...-...--.+ .-..+-..+..+|...+....+ ...
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~---sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~ 113 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGG---SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV 113 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH
Confidence 567778889999999999998876532211000001 1122223344555554322110 112
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 002286 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (942)
Q Consensus 106 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 185 (942)
+..-.++|+.+-.+.-...-.+|..+..+|..+...|++.+|...|- +..+ +.+..+..+-.-+...+
T Consensus 114 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~~~--------- 181 (336)
T 3lpz_A 114 RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYKQD--------- 181 (336)
T ss_dssp HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHHTS---------
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHHhc---------
Confidence 33344444444444222222455666666666666666666665552 1111 11122211111111111
Q ss_pred HHHHHhCCCCchhhHh-hHHHHHHHcCCHHHHHHHHHHHHh----hCC------------------CCHHH-HHHHHHHH
Q 002286 186 KRALQVHPSCPGAIRL-GIGLCRYKLGQLGKARQAFQRALQ----LDP------------------ENVEA-LVALAVMD 241 (942)
Q Consensus 186 ~~~l~~~p~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~----~~p------------------~~~~~-~~~l~~~~ 241 (942)
.|.. .+.+. .....|..+++...|...+...++ .+| ..+.. +..+..+-
T Consensus 182 ------~~~e-~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt 254 (336)
T 3lpz_A 182 ------ESHT-APLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS 254 (336)
T ss_dssp ------CGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHH
T ss_pred ------CCcc-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHH
Confidence 1222 23232 334456678888888776655443 222 22221 22333334
Q ss_pred HhhccHHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Q 002286 242 LQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFT 281 (942)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~ 281 (942)
+..+....+..-...|...++.+| .....+..+|..|+..
T Consensus 255 ~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 255 VQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 445554556666677777777777 6677777777777654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=5 Score=41.99 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002286 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA-LTNFEKVLEIYPDNCETLKALGHIYVQ 388 (942)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (942)
..|......|+.+.|...+.+++.....++ ..... ...+-.+ ...++.. ...+...++..+..
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~-L~~~~---------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPV-LDDLR---------DFQFVEPFATALVED------KVLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSST-TGGGT---------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCC-CCCCC---------chhHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 344455567899999999999997653221 11110 0111111 1222221 12355667888889
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHH-cCCCCCHHHHH
Q 002286 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-AGEEVPIEVLN 452 (942)
Q Consensus 389 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 452 (942)
.|++.+++..+..++..+|-+..++..+..++ ..|+..+|+..|+++...+.. .+..+.+.+..
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999 999999999999999887654 35555554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=2.2 Score=44.72 Aligned_cols=110 Identities=13% Similarity=0.051 Sum_probs=55.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
.|......|+.+.|...+..++......+.. ... ...+-.+ ...++... ..+...++..+...|+
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCC
Confidence 3444556688888888898888764322100 000 0111111 01111110 1122334455555666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
+.+|+..+..++..+|-+..++..+..++...|+ ..+|+..|+++
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~ 231 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 6666666666666666666666666666666665 55555555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.91 E-value=20 Score=43.69 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK--SHSYYNLARSYHSKGDYEKAGLYYMAS 331 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (942)
..+..+..++...+.++.+..+...++......+.. ...|..+-..+...|+|++|...+...
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 445555666666677777777776666554333221 224555566666666666666655443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.68 E-value=10 Score=46.38 Aligned_cols=119 Identities=7% Similarity=-0.068 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------------------HhC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL--------------------QVH 192 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------------------~~~ 192 (942)
.+...+...|.++-|.. .+...|.++...+.+|.+++..|++++|..+|+++- ...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34444555555554433 223445555555666666666666666666665431 011
Q ss_pred C--CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH----HHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 193 P--SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVE----ALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 193 p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~----~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
+ ...+..|+.+...+.+.|.++.++..-..|++..+. +.. .|..+-..++..|+ |++|...+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~ 962 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALM 962 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHH
Confidence 1 111334455555666666666666666666655432 221 24444455555555 555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.89 E-value=23 Score=35.21 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 002286 41 DLWLIIAREYFKQGKVEQFRQILEEGS 67 (942)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~a~~~l~~~~ 67 (942)
..+-+++.=|.+++++++|+.++..+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga 60 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA 60 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356777888888999999999987654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.15 E-value=2.9 Score=45.01 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 165 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+..+|.+......+..|..+|.++..+.|+. ...++.+|.+....|+.-+|+-+|.+++......+.+..++..+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 3444555555555555555555555555555 44555555555555555555555555554444444444444433
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.09 E-value=2.9 Score=44.69 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002286 269 MALNYLANHFFFTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (942)
Q Consensus 269 ~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 333 (942)
.+++.+.+.|...+.|+.|..+..+..-... .+......++.+|+++...++|.+|..++..++.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555566666555555531100 0111133344455555555555555555555554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.15 E-value=2.9 Score=45.10 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=57.9
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
+..+|.+......+..|..+|.++....|++...++.+|.+....|+.-.|+-+|-+++......+.+..++..++
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 4556777777777778888888888888888888888888888888888888887777776666677777776665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=82.38 E-value=0.00019 Score=74.12 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHH---------HHHHhcCCCCCCchhHHHHHHHHHH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ---------VQEAASGSVFVQMPDVWINLAHVYF 725 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~---------~~~~~p~~~~~~~~~~~~~la~~~~ 725 (942)
|.+++-+.+++..+.+...+......||.+|.+- +.++-.+.++. ++... .....|-.+..+|.
T Consensus 243 G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac------E~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 243 GYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA------EQAHLWAELVFLYD 315 (624)
T ss_dssp CCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH------TTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH------HHHhhHHHHHHHHh
Confidence 4555555555555554444555555555555532 22222222221 11111 23445666666666
Q ss_pred HhcCHHHHHH
Q 002286 726 AQGNFALAMK 735 (942)
Q Consensus 726 ~~g~~~~A~~ 735 (942)
.-.+|+.|+.
T Consensus 316 ~ydE~DnA~l 325 (624)
T 3lvg_A 316 KYEEYDNAII 325 (624)
T ss_dssp HHTCHHHHHH
T ss_pred cchhHHHHHH
Confidence 6677766653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 942 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-25 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-12 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 9e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.001 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 4e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.002 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-06 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 9e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.001 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 4e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 8e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 6e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (282), Expect = 2e-27
Identities = 64/440 (14%), Positives = 134/440 (30%), Gaps = 61/440 (13%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G + L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ +P EA L + + + + R + + L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ Y + + + +K I F
Sbjct: 121 VQAYV---------SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A +L + A ++A E P + N+ EKG
Sbjct: 232 LSPNHAVVHGNLACVYYE------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
A + AL
Sbjct: 286 SVAEAEDCYNTALRL-------------------------------------------CP 302
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 583 NEALKVNGKYPNALSMLGDL 602
EA++++ + +A S +G+
Sbjct: 363 KEAIRISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (279), Expect = 5e-27
Identities = 63/389 (16%), Positives = 136/389 (34%), Gaps = 30/389 (7%)
Query: 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV 91
+ + E + L+++ +F+ ++++ + + + A+ + G
Sbjct: 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ R K + E + +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA------------------Y 124
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
L+ + D + GR ++ Y +A++ P+ A +G G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQG 183
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271
++ A F++A+ LDP ++A + L + +A + + RA + P A+
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALSLSPNHAVVH 240
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
LA ++ G L A+ + P +Y NLA + KG +A Y
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN-- 295
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ L ++ + G+ A+ + K LE++P+ L + Q G+
Sbjct: 296 -TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+++A ++A +I P A A+ ++G L
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (268), Expect = 1e-25
Identities = 62/373 (16%), Positives = 122/373 (32%), Gaps = 44/373 (11%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ E A + + DN LL + + F R S F A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 195 CPGA-IRLGIGL-----------------------------CRYKLGQLGKARQAFQRAL 224
A LG L G A Q +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + + + + + +A E P A+A + L F G+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+L E A+ + P +Y NL +++A Y+ + ++
Sbjct: 186 WLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNHAVV 239
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L V + G A+ + + +E+ P + L + + G + +A++ A +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A + +L + + A L +KA E P +N+ + ++G
Sbjct: 300 LCPTHADSLNNLANIKRE------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 463 EFESAHQSFKDAL 475
+ + A +K+A+
Sbjct: 354 KLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (251), Expect = 2e-23
Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 40/403 (9%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467
A+A+ +LG + LK + I + + +G ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---------- 517
+ + + L + K A K ++ F ++
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 518 -----------VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566
V L N + NL +L++ A Y L ++ + LA
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 567 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 626
+ + + L+I+ A+++ +P+A L + + +A++ + A
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA------- 297
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
L A N K E ++E+A LY + + A + VL
Sbjct: 298 -------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729
++G+ + + + + D + N+ + +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.7 bits (226), Expect = 4e-20
Identities = 65/420 (15%), Positives = 141/420 (33%), Gaps = 38/420 (9%)
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 438
L H Q G E A+ + + +P + + L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF------QCRRLDRSAHF 55
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
A ++ P E +N+G ++ E+G+ + A + ++ AL +
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------FIDGYIN 106
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
+ + + + ++ + V +L LL+ + A Y +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616
++ A+ L + A+ + L+I +A+ ++ + +A LG++ + + +A +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676
A A + E ++ A + Y R I
Sbjct: 227 LRALS--------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
A L EKG ++D + + D NLA++ QGN A+++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
Y+ L + A LA + + Q+ AI ++P+ + G +++
Sbjct: 328 YRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 26/156 (16%)
Query: 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY------- 93
+ +A Y++QG ++ + E+ ++ D L G
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 94 -------------TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
L I+ +Q EE A + Y KA + + +L
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+G++++A +K + A
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (213), Expect = 4e-18
Identities = 31/241 (12%), Positives = 62/241 (25%), Gaps = 16/241 (6%)
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
S ++ ++A + + +LG L + +Q+ L D E +
Sbjct: 5 SAQYLRQAEVLKADMTDS-KLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 241 DLQANEAAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
A + +G K + A +L F QL + V N
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF------YTQLLQELCTVFN 114
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L + + +S LG +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQHC---LVHLGDIARYRNQTS 169
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A + + ++ P N + L + G ++ + A +L +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 420 L 420
L
Sbjct: 230 L 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (158), Expect = 2e-11
Identities = 32/363 (8%), Positives = 87/363 (23%), Gaps = 60/363 (16%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ QY +A + + +G ++ ++ ++
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL------------------------- 39
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
Y++ L ++ L + Q +
Sbjct: 40 ------------YQKMLVTDLEYALDKKVEQDLWNHAFKNQI---TTLQGQAKNRANPNR 84
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
+ V + + + ++++ F + C + + L + +
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
++ + H +L + +A YY PY L +
Sbjct: 145 SSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYR---HAAQLVPSNGQPYNQLAILA 196
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
GD + + + + + + L + + K +A
Sbjct: 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE----VKTKWGVSDFIKA 252
Query: 413 FIDL-GELLISSDTGAALDAFKTARTLLKKAGEEVPIE-------VLNNIGVIHFEKGEF 464
FI G + +S + K+ + + N+ +H +
Sbjct: 253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFS 312
Query: 465 ESA 467
Sbjct: 313 NET 315
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (158), Expect = 2e-11
Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 14/222 (6%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274
++ Q ++A L + ++ + A + + Q+ A+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ------DLYQKMLVTDLEYALDKKVE 57
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
+ + L A N ++ + + G Y +
Sbjct: 58 Q-DLWNHAFKNQITTLQGQAKNRANPNRSEVQANL-SLFLEAASGFYTQLLQELC---TV 112
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
N LG + K + + L LG I Q +
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQ 170
Query: 395 AQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTA 435
A+ R AA++ P + Q + L L S D + + +
Sbjct: 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 4e-07
Identities = 35/334 (10%), Positives = 90/334 (26%), Gaps = 28/334 (8%)
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453
++ + LR+A + + + E+ S A D ++ + + +E
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR--QALQDLYQKMLVTDLEYALDKKVEQD-- 59
Query: 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 513
F++ + + + ++ V + L+ +
Sbjct: 60 -----LWNHAFKNQITTLQGQ------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQE 108
Query: 514 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573
+ L + + T A + L IA+ RN
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRN 166
Query: 574 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
+ A ++ + L L D + + + K +
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV---KFPFPA-- 221
Query: 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 693
+ N AL K + + + + ++ ++Y + + +
Sbjct: 222 -ASTNLQKAL--SKALESRDEVKTKWGVSDFIKAFIKFHGHVY--LSKSLEKLSPLREKL 276
Query: 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727
+ + + A S + V INL ++ +
Sbjct: 277 EEQFKELLFQKAFNSQQLVHVTV-INLFQLHHLR 309
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ LG I KQ + + + V G + + + QA S ++
Sbjct: 123 SSQLGIISNKQTHTSA----IVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ N A + ++G + ++ +Y R++ V P A
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.5 bits (179), Expect = 2e-14
Identities = 31/260 (11%), Positives = 67/260 (25%), Gaps = 13/260 (5%)
Query: 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKAR 217
R+ + L + E + L F + L+V+P G L R +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
+ R L+ D N + QA + + + +Y +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCL 187
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ L ++ +++ +Y + +
Sbjct: 188 LPQLHPQ-------PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH---RWLLG 237
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
E +F + L + +++ T+ L L ++ +
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 398 LLRKAAKIDPRDAQAFIDLG 417
+DP A DL
Sbjct: 298 YFSTLKAVDPMRAAYLDDLR 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 19/316 (6%)
Query: 117 YNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Y+K + + + + +G L +G++ A F+ ++ D ++ A +
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +R L++ P A+ + +A + + L+ P
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAH 122
Query: 233 ALVALAV-----MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
+ + G E++ A+ L+ + ++
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF-LAAVRLDPTSIDPDVQCGLGVL 181
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 343
L+ + N ++ G G +V + E +I
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----HIYVQLGQIEKAQELL 399
Y LG + LG R A+ +F + L + + G +I+ L
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 400 RKAAKIDPRDAQAFID 415
D RD +
Sbjct: 302 DAYGAADARDLSTLLT 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 1e-10
Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 23/291 (7%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
GL R + G L A F+ A+Q DP+++EA L + + + ++R E+
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ---ELLAISALRRCLEL 82
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP------------TKSHSYYNL 311
P AL LA F ++ L T +
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
S S + + ++A+V ++ GLG + G++ A+ F L +
Sbjct: 143 LGSLLSDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALD 430
P++ LG Q E+A R+A ++ P ++ +LG I+ A++
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 431 AFKTARTLLKKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
F A + +K+ + + + + G+ ++ + L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 46/294 (15%), Positives = 82/294 (27%), Gaps = 24/294 (8%)
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y+K + E P + G +L+ GD +A+ FE ++ P + E
Sbjct: 3 TYDKGYQF------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 56
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG-----------AA 428
+ LG + Q A LR+ ++ P + A + L +
Sbjct: 57 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116
Query: 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488
A+ T ++ + I F + F A+ D +
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
Query: 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548
V+ + N L L N + E + Y
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------Y 229
Query: 549 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
R L Y+ + L + ++E EAL + K G +
Sbjct: 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 639
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 640 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 697
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 758 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.7 bits (152), Expect = 3e-11
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 409 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468
L L+ ++ K GE + + ++E
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119
Query: 469 QSFKDAL 475
+
Sbjct: 120 ELALQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 51.6 bits (123), Expect = 2e-07
Identities = 15/130 (11%), Positives = 36/130 (27%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + +A + + S +LL G+ E+A ++ + +P +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
D + A + + L + + + +L E
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 233 ALVALAVMDL 242
+ D+
Sbjct: 135 LANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 51.6 bits (123), Expect = 2e-07
Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ L++G+++QA ++A + + G + + E +++++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L + + A+ A + + E + + + + + + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS--- 119
Query: 255 EKMQRAFEIYPYCAMALNYLA 275
E + E+ N +
Sbjct: 120 ELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 48.1 bits (114), Expect = 2e-06
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 7/138 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + GD+E+A M S+K P ++ L + +
Sbjct: 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-YLPGASQLRHLVKAAQARKDF 83
Query: 362 LTNFEKVLEI-YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-EL 419
+ + ++ + E+ EL + ++ D
Sbjct: 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 143
Query: 420 LISSD--TGAALDAFKTA 435
+ D G ++ F TA
Sbjct: 144 VRDIDDRLGGYIELFSTA 161
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 44.6 bits (105), Expect = 3e-05
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
++ S+G ++A + ++K P + ++ GDF A + +++
Sbjct: 3 WKNALSEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALD 430
+P+ L H+ + + A + + + L
Sbjct: 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS------MVSQ 113
Query: 431 AFKTARTLLKKAGEEVP 447
++ L + E
Sbjct: 114 DYEQVSELALQIEELRQ 130
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.1 bits (101), Expect = 9e-05
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.2 bits (96), Expect = 3e-04
Identities = 10/138 (7%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+++ +E + A + P A + G ++ ++ + P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGAS 68
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L + + + + + D+ ++
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTK--SLVSFNLSMVSQDYEQVSELALQIE 126
Query: 370 EIYPDNCETLKALGHIYV 387
E+ + V
Sbjct: 127 ELRQEKGFLANDTSFSDV 144
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 61.9 bits (148), Expect = 1e-10
Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 33/321 (10%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 188
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 189 LQVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--------ENVEALV 235
Q+ + + G L A + ++A QL + +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE------Q 289
A + Y + L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGL 348
L H S++ + GD A + + K E H + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 403 AKIDPR--DAQAFIDLGELLI 421
K+ R F+ GE +
Sbjct: 318 LKLANRTGFISHFVIEGEAMA 338
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 21/285 (7%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 574
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 575 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 626
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 747 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787
+ LL L + +++A + D ++ LL A+ LA +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 7/210 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ LG AR F +AL + P+ E L + QA E E
Sbjct: 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLE 99
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ P A ++ G+ L + P L + + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ K + + + LG + + + + ET L
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYL 215
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
G Y+ LG ++ A L + A + +
Sbjct: 216 GKYYLSLGDLDSATALFKLAVANNVHNFVE 245
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.0 bits (115), Expect = 9e-07
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 8/249 (3%)
Query: 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + D + L + + + G + + + +AL + P P
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY- 76
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G+ + G A +AF L+LDP L A + Q
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNY-------AHLNRGIALYYGGRDKLAQDDLL 129
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + + + Q +Q E + + + + +
Sbjct: 130 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 189
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + LG+ L LGD SA F+ + N +
Sbjct: 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
Query: 383 GHIYVQLGQ 391
LGQ
Sbjct: 250 LLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 8e-04
Identities = 33/250 (13%), Positives = 63/250 (25%), Gaps = 19/250 (7%)
Query: 361 ALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
L E++L + + L G +Y LG A+ +A I P + F L
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
G L + A + L N G+ + G + A
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAH----LNRGIALYYGGRDKLAQDDLLAFYQ 133
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536
D + + + + Q + + ++ +
Sbjct: 134 -------DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186
Query: 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----Y 592
+ + + L + +L + L A+ N +
Sbjct: 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246
Query: 593 PNALSMLGDL 602
AL L L
Sbjct: 247 RYALLELSLL 256
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 3e-08
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 28/169 (16%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + PH I + +G + L + A F
Sbjct: 7 SLWNEGVLAADKKDWKGALDAF----SAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 60
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + G +Y Q + + A + L++A +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-------------- 106
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L + EVL NI ++ +K E++ A + A
Sbjct: 107 --------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 6e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + + A + IN+ Y+ G + + + A
Sbjct: 33 DPHSRICFNIGCMYTILKNMTE---AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 150 KSEPRHSKID 159
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A ++ + G + + +A AF + D+ A
Sbjct: 17 DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 73
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQ---------------VHPSCPGAIRLGIGLCRYKL 210
+ + + +Y +++ K AL + I K
Sbjct: 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ KA + A + E + + A+ +
Sbjct: 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 21/189 (11%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
Y +A Y + I + Y LK+ AL +
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYG---RAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI----- 421
+ LE+ + + LG +++ ++A L++A + F D +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 422 -------------SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468
S+ + L A + + E + G I ++ E+ H
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182
Query: 469 QSFKDALGD 477
+ + +
Sbjct: 183 DKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.4 bits (101), Expect = 4e-05
Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 7/189 (3%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G + + +A + RA+ +P A+ L+ + + + +RA E+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALEL 67
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A +L + + A ++ + ++ + S ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKR 124
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + ++ H ++ + + +L + + E I
Sbjct: 125 WNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 384 HIYVQLGQI 392
+ ++
Sbjct: 184 KYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 11/199 (5%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ LK G+ + +A +A +P A + + + A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
L ++ +G E ++ A + + A L + + D
Sbjct: 65 LELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYS-------LAKEQRLNFGDDI 113
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
S L+ + ++ E H E + A ++ + +
Sbjct: 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Query: 557 DYVDAYLRLAAIAKARNNL 575
+ + L
Sbjct: 174 QQACIEAKHDKYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.8 bits (89), Expect = 0.001
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
+ A Y +A + + + L + EQA + + LE D +V A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
+ Y +++ +RA + I L A++ +++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI------PSALRIAKKKRWNSIE 129
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ E+ + + L A E + +E+ QR E +
Sbjct: 130 ERRIHQESELHSYLTRLIAAER---ERELEECQRNHEGHE 166
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 4e-06
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ A Y DYE A +Y +++ + L+ + AL
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALG 65
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ + +E+ + + LG+ A K+ P D A + E
Sbjct: 66 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (111), Expect = 5e-06
Identities = 31/271 (11%), Positives = 69/271 (25%), Gaps = 39/271 (14%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------D 227
+ ++ ++ + +A ++ +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQAATIY---------------RLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHF 285
E V + +E + F N+ H
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 286 LVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY----MASVKEIN 336
+ + LA + + A G Y +A Y +S+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQ--L 389
+ G QL D +A ++ P+ LK+L +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Q+ + + ++D + E +
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 0.001
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 607
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 725
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 726 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 781 PSNYTL 786
T+
Sbjct: 271 KWKITI 276
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (90), Expect = 0.002
Identities = 21/187 (11%), Positives = 55/187 (29%), Gaps = 19/187 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCET-------LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
E ++I+ + + + L KA + A + +D +
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159
Query: 418 ELLISSDTGAALDAFKTARTLLKKAGEEVPI---------EVLNNIGVIHFEKGEFESAH 468
+ +D A + A + K + + G+ + +A
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 469 QSFKDAL 475
++ ++
Sbjct: 220 RTLQEGQ 226
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ L + +++ DY L+ +++ + + L + GD AL
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+K+LE+ P++ L + + +
Sbjct: 68 LTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 2e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 398 LLRKAAKIDPRDAQAFIDLGEL 419
L +K ++DP +A +L
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (103), Expect = 9e-06
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
+ S D K + + + F Y D R + E++L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 370 EI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + L +L + EKA + +R + +P++ QA
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLG---QACVEFNRGRYSDSLEFYKRALQVHPS 194
L++ ++ + F+ A + + + L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 195 CPGAIRL-GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
+ + + Y+L + KA + + LQ +P+N +A ++D
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ + N E+ ++ A + Y D + G+ +
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ E + L +L ++ AL +L+ P N + + I +
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 391 Q 391
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 6e-04
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 2/92 (2%)
Query: 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267
+ L K + FQ + A ++ IRKG+ ++
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69
Query: 268 AM--ALNYLANHFFFTGQHFLVEQLTETALAV 297
+ YLA + ++ + L
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.001
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGE 444
V + + K ++ + + L+ LL K +
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
E + + + V ++ E+E A + + L
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.002
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744
L + F + A S S Q + + + + + L K
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQF--EYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ YLA +Y ++++ K + + P N
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.1 bits (108), Expect = 9e-06
Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 185 YKRALQVHPSCP-------------GAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN 230
Y++ L V P + G +A ++RA+ L +N
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+ A A + + + ++ +I P +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMI 156
Query: 291 TETALAVTNHGPTKSHSYYNLAR-SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A T+ H Y A Y+ D A + +K+ E++ Y
Sbjct: 157 FKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY- 212
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 405
L + + FE+VL E + ++ G + ++ ++
Sbjct: 213 --LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
Query: 406 DPRDAQA 412
+ +
Sbjct: 271 FREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 19/255 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL-LGQACVEFNRGRYSDSLEFYKRAL 189
KG + AK ++A++ ++ + L A E +R +Y Y R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ P + + + + R F++A + V A+M+ ++
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--D 184
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + + Y + ++ + L E L + P KS +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 310 NLARSYHSK-GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++ S GD S+ ++ K F + G + L + K
Sbjct: 245 ARFLAFESNIGDLA--------SILKVEKRRFTAFR-------EEYEGKETALLVDRYKF 289
Query: 369 LEIYPDNCETLKALG 383
+++YP + LKALG
Sbjct: 290 MDLYPCSASELKALG 304
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
A + +L + + ++ NLA Y +Y K K
Sbjct: 34 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK---AVECCDKA 90
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
Query: 395 AQE-----LLRKAAKID 406
+ +K A+ D
Sbjct: 151 RDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.8 bits (89), Expect = 0.001
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQV 351
++ Y G Y +A + Y V + + + + L
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LKL ++ A+ +K L + N + L G + + + E A+ K +++P++
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 412 AFIDLGELL 420
A + +
Sbjct: 134 ARLQIFMCQ 142
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 4e-05
Identities = 25/278 (8%), Positives = 75/278 (26%), Gaps = 12/278 (4%)
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS--SDTG 426
+ + + + + E+A +L R A +++ + + LL S D
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
++ K +V ++ V+ + + D +
Sbjct: 96 EEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIAD--ILNQDAKNYHA 148
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
+ + + + + D + + + V+ N ++
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL--EL 604
+I + + + ++ L+ + P ++ L D+ ++
Sbjct: 209 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268
Query: 605 KNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 641
+ ++ A + T+ W Y
Sbjct: 269 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 8e-05
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGA------IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFR 359
++ L + K D++ A +Y + + + Y+ G
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ + E Y + +G+ Y + + + A K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
F +D ++V+ ++ ++ + + A + Y +
Sbjct: 9 FPEDADVDLKDVDKILLIS---EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE 65
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L P N+ D++ + ++ +
Sbjct: 66 DADGAKL--------------QPVALSCVLNIGACKLKMSDWQG---AVDSCLEALEIDP 108
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
Y Q L ++ AL + +K EI P++ L + ++ + +
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------- 344
+ L + S N+ ++ ++E A Y ++ +
Sbjct: 14 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73
Query: 345 ------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
+G +LK+ D++ A+ + + LEI P N + L + L + ++A
Sbjct: 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133
Query: 399 LRKAAKIDPRDAQAFIDLGELL 420
L+KA +I P D +L ++
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVK 155
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-------------IFPYYGLGQ 350
+ + K + +A + Y ++ E+ I L
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 411 QAFIDLGELL 420
+
Sbjct: 136 DIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335
+ F+ + + + + + NLA Y+ DY KA + +K
Sbjct: 38 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97
Query: 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ ++ + G A N K + P+N + + +L + K
Sbjct: 98 KNNVKALYKLG---VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
KG L+ G ++ A + ++ D N ++ +G Y + E + + + P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
L + +A++ ++ L+ + N + L
Sbjct: 69 DWGK-GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 9e-04
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ + S G+ + A Y + I Y K GD++ A
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYS---EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ K +++ PD + L + E+A+ + K + + Q L +
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 942 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.75 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.28 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.27 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.25 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.23 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.85 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.45 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.06 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.79 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.55 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.36 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-35 Score=322.17 Aligned_cols=384 Identities=20% Similarity=0.251 Sum_probs=342.2
Q ss_pred hhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcC
Q 002286 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS 423 (942)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~ 423 (942)
++.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ..|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 3567888888888888888888888888888888888888888888888888888888888888888888888888 888
Q ss_pred CHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhh
Q 002286 424 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503 (942)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (942)
++++|+..+..+....+. ........+......+....+.........
T Consensus 82 ~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 129 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ--------------------------- 129 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------
T ss_pred cccccccccccccccccc-----cccccccccccccccccccccccccccccc---------------------------
Confidence 888888888888776443 456666667777777777777666666555
Q ss_pred hhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 002286 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (942)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 583 (942)
..+.........+......+....+...+...+...|+++.++..+|.++...|++++|...++
T Consensus 130 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 130 ----------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp ----------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------cccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHH
Confidence 3344666777788888889999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHH
Q 002286 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (942)
Q Consensus 584 ~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (942)
+++..+|+++.++..+|.++...|++++|+..|.++....+. ....+..+|.+ |... |++++|+..
T Consensus 194 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~ 259 (388)
T d1w3ba_ 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDT 259 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHH
T ss_pred HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHH-HHHC------------CCHHHHHHH
Confidence 999999999999999999999999999999999999988776 67778889998 8888 999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002286 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (942)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 743 (942)
|+++++.+|+++.++..+|.++...|++++|+..|+.+....| ..+.++..+|.++...|++++|+..|+++++.
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-----ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987 78999999999999999999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 744 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
.|.++.+++.+|.+|...|++++|+..|+++++++|+++.+++++|.+|..+
T Consensus 335 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999999999999999998765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-35 Score=317.55 Aligned_cols=385 Identities=22% Similarity=0.281 Sum_probs=265.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcC
Q 002286 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (942)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 211 (942)
+.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++ +.++..+|.++..+|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhhhhc
Confidence 4578888889999999999999999999999999999999999999999999999999999988 677888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002286 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (942)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~ 291 (942)
++++|+..+..++..+|.........+......+. ...+...........+.........+......+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 99999999999998888888888888877777766 666666666677777777766666666666666666666666
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHh
Q 002286 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (942)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (942)
...+... |..+.++..+|..+...|++++|...+.+++. .+|....++..+|.++...|++++|+..++++...
T Consensus 159 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 159 LKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHhhccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHH---hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 6665433 44556666666666666666666666666665 34555666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHH
Q 002286 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEV 450 (942)
Q Consensus 372 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 450 (942)
.|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ..|++.+|+..++.+....|. ....
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 307 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADS 307 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHH
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-----cchh
Confidence 6666666666666666666666666666666666666666666666666 666666666666555544332 3455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHH
Q 002286 451 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530 (942)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (942)
+..+|.++...|++++|+..|++++. ..|.++.++++
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~ 344 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSN 344 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCCHHHHHH
Confidence 55555555555555555555555554 34445555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002286 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 574 (942)
Q Consensus 531 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 574 (942)
+|.++...|++++|+..|+++++.+|+++.++..+|.++..+||
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 55555555555555555555555555555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.1e-24 Score=224.28 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=194.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
+....+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++.+|++ ...+..+|.+
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 96 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-QTALMALAVS 96 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc-cccccccccc
Confidence 446678999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 286 (942)
+...|++++|+..+++++..+|................+ .
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~------------------ 136 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG----------------------L------------------ 136 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------------------------------
T ss_pred ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcc----------------------c------------------
Confidence 999999999999999999998875433211111000000 0
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
.........+...+.+.+|...|.+++...+. .....++..+|.++...|++++|+..|+
T Consensus 137 -------------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 196 (323)
T d1fcha_ 137 -------------------GPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFT 196 (323)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------ccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHhhhhcccc
Confidence 00000011112233445566666666553221 2234455666677777777777777777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCC
Q 002286 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (942)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (942)
+++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ..|++++|+..|++++++.|.....
T Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred cccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 777777777777777777777777777777777777777777777777777777 7777777777777777766653221
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 446 ------VPIEVLNNIGVIHFEKGEFESAHQSF 471 (942)
Q Consensus 446 ------~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (942)
....++..++.++...|+.+.+....
T Consensus 277 ~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 277 RGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12345666677777777665554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.4e-24 Score=224.00 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=217.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhh
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 603 (942)
+....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++.++|+++.++..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHH-hhhhc--ChhHHHHHHHHHHHHHHHHHhcCCC--CHHHH
Q 002286 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL-RNEKR--APKLEATHLEKAKELYTRVIVQHTS--NLYAA 678 (942)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~-~~~~~--~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~ 678 (942)
...|++++|+..+.+++...|..... ....... ..... ..... ......+.+.+|...|.+++..+|+ ++.++
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHL-VTPAEEG-AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGG-CC----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccchhhHHHhccchHHH-HHhhhhh-hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999987762211 1000000 00000 00000 0001238899999999999999987 56788
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 002286 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 758 (942)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~ 758 (942)
..+|.++...|++++|+..|++++...| +++.+|+++|.++...|++++|+..|+++++. ++.++.+++.+|.
T Consensus 176 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~ 248 (323)
T d1fcha_ 176 CGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGI 248 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhhccccccccccc-----ccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHH
Confidence 9999999999999999999999999998 78999999999999999999999999999998 5677999999999
Q ss_pred HHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHH
Q 002286 759 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (942)
Q Consensus 759 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 793 (942)
+|...|++++|+..|++++.++|++...++..+.+
T Consensus 249 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 249 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHH
Confidence 99999999999999999999999987766655443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=2.3e-21 Score=203.48 Aligned_cols=263 Identities=9% Similarity=-0.036 Sum_probs=218.1
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--h
Q 002286 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (942)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~ 178 (942)
++|+.++++++..+|++..+|..++.++...+ .+++|+.+|+.++..+|+++.+|..+|.++...+. +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 48999999999999999999988887765544 37888889999998899998888888888777654 7
Q ss_pred HHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHH
Q 002286 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (942)
Q Consensus 179 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 258 (942)
++|+..+++++..+|......+...|.++...|.+++|+..++++++.+|++..+|..+|.++...|+ +++|+..+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCS
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 88888999999888888455456778888888888889888888888888888888888888888888 666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 002286 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (942)
Q Consensus 259 ~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 338 (942)
+++...|.... ....+...+..+++...|.+++. ..
T Consensus 203 ~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~a~~~~~~~l~---~~ 238 (334)
T d1dcea1 203 LPENVLLKELE-----------------------------------------LVQNAFFTDPNDQSAWFYHRWLL---GR 238 (334)
T ss_dssp SCHHHHHHHHH-----------------------------------------HHHHHHHHCSSCSHHHHHHHHHH---SC
T ss_pred HhHHhHHHHHH-----------------------------------------HHHHHHHhcchhHHHHHHHHHHH---hC
Confidence 55555443221 12223444566678888888887 56
Q ss_pred CCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 002286 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (942)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 418 (942)
|.....+..+|.++...|++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.+...|..++.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HH
Q 002286 419 LL 420 (942)
Q Consensus 419 ~~ 420 (942)
.+
T Consensus 319 ~~ 320 (334)
T d1dcea1 319 KF 320 (334)
T ss_dssp HH
T ss_pred HH
Confidence 77
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-20 Score=192.42 Aligned_cols=239 Identities=10% Similarity=0.007 Sum_probs=213.7
Q ss_pred CCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhhcCCChhHHHH
Q 002286 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 598 (942)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~ 598 (942)
..|....++..+|.++.+.+.+++|+..+++++..+|++..+|..+|.++...| ++++|+.++++++..+|++..+|..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 567788899999999999999999999999999999999999999999999876 5899999999999999999999999
Q ss_pred hhhhhccccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 002286 599 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 678 (942)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~ 678 (942)
+|.++...|++++|+..+.++++..|. +..++..+|.+ +... |++++|+..|+++++.+|.+..++
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~a~ 183 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNSVW 183 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHH-HHHH------------HhhHHHHHHHHHHHHHCCccHHHH
Confidence 999999999999999999999999988 78899999999 9988 999999999999999999999999
Q ss_pred HHHHHHHHhcCC------chHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHH
Q 002286 679 NGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 752 (942)
Q Consensus 679 ~~la~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 752 (942)
+.+|.++...+. +++|+..+.++++..| .++.+|.++|.++...| ..++...++.++...|...++.+
T Consensus 184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 257 (315)
T d2h6fa1 184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYL 257 (315)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-----CchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHH
Confidence 999999988776 4789999999999998 78999999999876544 68899999999998888778888
Q ss_pred HHHHHHHHHHc--ccHHHHHHHHHHHHH
Q 002286 753 LLYLARTHYEA--EQWQDCKKSLLRAIH 778 (942)
Q Consensus 753 ~~~l~~~~~~~--g~~~~A~~~~~~al~ 778 (942)
+..++.+|... +..+.+...+.+++.
T Consensus 258 ~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 258 IAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888887653 344444455555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.5e-19 Score=186.09 Aligned_cols=221 Identities=12% Similarity=0.037 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADR 159 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p 159 (942)
+-..++..++.++...++.+ +|+..++++++++|.+..+|..+|.++...| ++++|+..+++++..+|
T Consensus 41 ~~~~a~~~~~~~~~~~e~~~-----------~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p 109 (315)
T d2h6fa1 41 KFRDVYDYFRAVLQRDERSE-----------RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCCH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCchH-----------HHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 44668888899998888877 9999999999999999999999999999987 59999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002286 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (942)
Q Consensus 160 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 239 (942)
++..+|..+|.++...|++++|+..+.++++.+|++ ..+|..+|.++..+|++++|+..|+++++++|.+..+|..+|.
T Consensus 110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~ 188 (315)
T d2h6fa1 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188 (315)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHhhcc---HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 002286 240 MDLQANE---AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (942)
Q Consensus 240 ~~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~ 315 (942)
++...+. .+.+.+|+..+.+++..+|++..++..++.++... ...++...++.++...+. +..+.++..++.+|
T Consensus 189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 189 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS-HSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT-CCCHHHHHHHHHHH
T ss_pred HHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC-cCCHHHHHHHHHHH
Confidence 8877554 34588999999999999999999999998875544 456777777777765433 22334444555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=7.7e-20 Score=191.72 Aligned_cols=274 Identities=8% Similarity=-0.103 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (942)
Q Consensus 250 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (942)
.++|+..+++++..+|++..+|+..+.++... ...+..+...|++.+|+.+++
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l---------------------------~~~~~~~~~~~~~~~al~~~~ 97 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHL---------------------------ETEKSPEESAALVKAELGFLE 97 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------------------------HTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH---------------------------hhhcchHHHHHHHHHHHHHHH
Confidence 35677777777777777776666655543221 222334566677888999999
Q ss_pred HHHHhcCCCCCchhhhhcHHHHHHHcCC--hHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002286 330 ASVKEINKPHEFIFPYYGLGQVQLKLGD--FRSALTNFEKVLEIYPDNCETL-KALGHIYVQLGQIEKAQELLRKAAKID 406 (942)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~l~~~ 406 (942)
++++ .+|.+..+++.+|.++...++ +++|+..+.+++..+|.+..++ ...|.++...|.+++|+..+++++..+
T Consensus 98 ~~l~---~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~ 174 (334)
T d1dcea1 98 SCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (334)
T ss_dssp HHHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHH---hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 9987 678888889999988887765 8999999999999999988876 567788889999999999999999999
Q ss_pred cCcHHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhcc
Q 002286 407 PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485 (942)
Q Consensus 407 p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 485 (942)
|.+..+|..+|.++ ..|++++|...+.+++...+.. .. ....+...+..+++...+.+++.
T Consensus 175 p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~----~~~~~~~l~~~~~a~~~~~~~l~--------- 236 (334)
T d1dcea1 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----LE----LVQNAFFTDPNDQSAWFYHRWLL--------- 236 (334)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----HH----HHHHHHHHCSSCSHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----HH----HHHHHHHhcchhHHHHHHHHHHH---------
Confidence 99999999999999 9999999999988888887652 22 23345667888889999999887
Q ss_pred ccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002286 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRL 565 (942)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 565 (942)
..|.....+..++.++...|++.+|+..+.+++..+|.+..++..+
T Consensus 237 ----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 282 (334)
T d1dcea1 237 ----------------------------------GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282 (334)
T ss_dssp ----------------------------------SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------------hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 5566777888889999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhcc
Q 002286 566 AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (942)
Q Consensus 566 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 605 (942)
|.++...|++++|+.+++++++++|.++..|..++..+..
T Consensus 283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999988887664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.3e-17 Score=165.83 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002286 109 HFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (942)
Q Consensus 109 ~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 184 (942)
.++.|+..+++++...+ ....+++.+|.+|...|++++|+..|++++..+|+++.++..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 44577777788876533 34568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhC
Q 002286 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (942)
Q Consensus 185 ~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 264 (942)
|++++..+|++ +.+++.+|.++..+|++++|+..|+++++.+|.+......++......+. ...+...........
T Consensus 94 ~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE---KQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHSC
T ss_pred hhHHHHHHhhh-hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh---HHHHHHHHHHhhccc
Confidence 99999999999 77899999999999999999999999999999999988888877777665 334444444444444
Q ss_pred CCC
Q 002286 265 PYC 267 (942)
Q Consensus 265 p~~ 267 (942)
+..
T Consensus 170 ~~~ 172 (259)
T d1xnfa_ 170 KEQ 172 (259)
T ss_dssp CCS
T ss_pred hhh
Confidence 433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=3.7e-18 Score=171.75 Aligned_cols=225 Identities=15% Similarity=0.134 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHH
Q 002286 143 EVEQASSAFKIVLEADR----DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (942)
+.+.|+..+++++...+ ....+++.+|.++...|++++|+..|++++.++|++ +.+++.+|.++..+|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-HHHHhhhchHHHHHHHHHHhhh
Confidence 45667777777776533 345688999999999999999999999999999999 7788999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002286 219 AFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (942)
Q Consensus 219 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~ 298 (942)
.|+++++++|+++.++..+|.++...|+ +.+|+..|+++++.+|.+......++..+...+....+..+........
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhh---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998 9999999999999999888777777766666665555444444443322
Q ss_pred CCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q 002286 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (942)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (942)
...+.. .+...+ .+.. ...+.+..+...+.......|....+
T Consensus 170 ~~~~~~-----~~~~~~--~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (259)
T d1xnfa_ 170 KEQWGW-----NIVEFY--LGNI-------------------------------SEQTLMERLKADATDNTSLAEHLSET 211 (259)
T ss_dssp CCSTHH-----HHHHHH--TTSS-------------------------------CHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hhhhhh-----hHHHHH--HHHH-------------------------------HHHHHHHHHHHHHHHhhhcCcccHHH
Confidence 221111 011111 1110 01112233333333344444555556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 002286 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 409 (942)
++.+|.+|...|++++|+.+|++++..+|++
T Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 212 NFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 6666666666666666666666666666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.5e-16 Score=165.97 Aligned_cols=309 Identities=14% Similarity=0.044 Sum_probs=205.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-----h
Q 002286 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----G 197 (942)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~ 197 (942)
+.....+|.+++..|++++|+..|++++...|++ ..++..+|.++...|++++|+..|++++...|... .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 4456667888888888888888888888887765 34677778888888888888888888877654331 2
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHH
Q 002286 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (942)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 269 (942)
..+..++.++...|++..|...+.+++...+. ....+..+|.++...|+ ++.+...+.++....+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~~~~~- 167 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ- 167 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHhhhhh-
Confidence 34566777777778888888777777654221 12234445555555555 5555555555555443221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chhhh
Q 002286 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIFPY 345 (942)
Q Consensus 270 ~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~ 345 (942)
......++...+..+...|++..+...+.++......... ...++
T Consensus 168 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 168 -------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp -------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred -------------------------------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 1223345666677777777777777777777654332222 23345
Q ss_pred hcHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCcHHHHHH
Q 002286 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFID 415 (942)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~ 415 (942)
..++.++...|++++|...+.+++...|.+ ...+..+|.++...|++++|...+++++.. .|....++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 667777788888888888888877665543 445667788888888888888888887743 3556677888
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHH
Q 002286 416 LGELL-ISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSF 471 (942)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (942)
+|.++ ..|++++|+..+++++.+.+..+... ....+..+...+...+..+++....
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~ 357 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 357 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 88888 88888888888888888776654321 1234444555566667777766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.3e-16 Score=163.97 Aligned_cols=283 Identities=14% Similarity=0.027 Sum_probs=200.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHH-hcCCHhHHHHHHHHHHHHHHHcCCCC-C
Q 002286 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-P 447 (942)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 447 (942)
.+++....|.++...|++++|+..+++++...|++ ..++..+|.++ ..|++++|+..|++++...+..+... .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45566677777888888888888888888777765 34667778888 88888888888888887776643321 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
...+..++.++...|++..|...+.+++...+... ....+....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----------------------------------~~~~~~~~~~ 135 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-----------------------------------LEQLPMHEFL 135 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------------------------------CTTSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc-----------------------------------cchhhHHHHH
Confidence 35678889999999999999999999887432110 0022334567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC-------hhH
Q 002286 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDY-----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 595 (942)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~ 595 (942)
...+|.++...|+++.|...+..++...+.. ..++...+..+...+++..+...+.++....+.. ..+
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 7889999999999999999999999876543 5677888889999999999999999988876433 235
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhccCCCCch---hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHh---
Q 002286 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDS---YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV--- 669 (942)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--- 669 (942)
+..++.++...|+++.|...+.+++...+.... .....+|.+ |... |++++|...+++++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~ 282 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA-QILL------------GEFEPAEIVLEELNENAR 282 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHh
Confidence 677888899999999999999999887665332 233344555 5555 666666666665553
Q ss_pred ---cCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 002286 670 ---QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (942)
Q Consensus 670 ---~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 705 (942)
..|....++..+|.++...|++++|+..++++++..
T Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 283 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 223344455555555555555555555555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.7e-14 Score=121.44 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+...|..++..|++++|+.+|.++++.+|+++.+|..+|.++...|++++|+..|.+++..+|++ +.+++.+|.++..+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHc
Confidence 45689999999999999999999999999999999999999999999999999999999999998 67799999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMD 241 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 241 (942)
|++++|+..|+++++.+|+++.++..++.+.
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999999999988887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2.8e-13 Score=138.68 Aligned_cols=229 Identities=13% Similarity=0.107 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK--------------GEVEQASSAFKIVLEA-DRDNVPALLGQACV 171 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--------------g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~ 171 (942)
....+.+..+|++|+...|.++..|+..+..+... +..++|..+|++++.. .|.+...|...+..
T Consensus 29 ~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 29 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34566788999999999999999999888765443 3458899999999975 78888999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hccHHhH
Q 002286 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGI 250 (942)
Q Consensus 172 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~ 250 (942)
....|+++.|..+|++++...|.+...+|...+......|+++.|+.+|.++++..|.+...+...+..... .|+ .
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~---~ 185 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---K 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---H
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC---H
Confidence 999999999999999999999988666789999999999999999999999999999999999988876543 567 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 002286 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK-SHSYYNLARSYHSKGDYEKAGLYYM 329 (942)
Q Consensus 251 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 329 (942)
+.|...|++++..+|.++..+...+..+...|+++.|..+|++++...+.+|.. ...|..........|+.+.+..+++
T Consensus 186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876655543 3466777777778899999999999
Q ss_pred HHHHhcCCC
Q 002286 330 ASVKEINKP 338 (942)
Q Consensus 330 ~a~~~~~~~ 338 (942)
++.+.++..
T Consensus 266 r~~~~~~~~ 274 (308)
T d2onda1 266 RRFTAFREE 274 (308)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHCccc
Confidence 888766543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2.4e-13 Score=139.26 Aligned_cols=228 Identities=9% Similarity=0.021 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------CChhHHHHHHHHHHhh-cCCChhHHHHhhhhhcc
Q 002286 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELK 605 (942)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~ 605 (942)
...+..+|++++...|.++..|+..+...... +..++|...|++++.. .|.++..|..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 35567789999999999999998887765432 3457899999999975 78888999999999999
Q ss_pred ccchHHHHHHHHHhhccCCCCchhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002286 606 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 685 (942)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 685 (942)
.|+++.|...|++++...|.+...++...++. .... |+++.|.++|.+++...|.+...+...|...
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e 178 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999998887555667777777 6666 8999999999999999999999888888765
Q ss_pred H-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHH
Q 002286 686 A-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYE 762 (942)
Q Consensus 686 ~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~l~~~~~~ 762 (942)
. ..|+.+.|..+|++++...| .++..|...+..+...|+++.|..+|+++++..|.+++ ..++.........
T Consensus 179 ~~~~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~ 253 (308)
T d2onda1 179 YYCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 4 46899999999999999998 78999999999999999999999999999998765543 5577777777778
Q ss_pred cccHHHHHHHHHHHHHhCCCChhh
Q 002286 763 AEQWQDCKKSLLRAIHLAPSNYTL 786 (942)
Q Consensus 763 ~g~~~~A~~~~~~al~~~p~~~~~ 786 (942)
.|+.+.+.++++++.+.+|.....
T Consensus 254 ~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 254 IGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCHHHHHHHHHHHHHHCcccccc
Confidence 899999999999999999987554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.4e-15 Score=162.81 Aligned_cols=231 Identities=12% Similarity=0.011 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHhhc
Q 002286 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (942)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (942)
-+|.++|++++...|+.+++++.+|.++...|++.+| |++++..+|+....+...+.+. ...+..++..++...+
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999877 8899999987766554333322 2235677888887776
Q ss_pred cCCCCc--hhHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 002286 622 ATDGKD--SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 699 (942)
Q Consensus 622 ~~~~~~--~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 699 (942)
.....+ ......++.+ +... +.|..|+..|.+++..+|++..++..+|.++...|+.++|...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l-~~a~------------~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFL-EAAS------------GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp CSSCTTTTHHHHHHHHHH-HHHH------------HHHHHHHHHHTC-------------------------------CC
T ss_pred cccCccHHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 543322 2222223444 4444 899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 002286 700 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (942)
Q Consensus 700 ~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 779 (942)
+++...| ..+++++|.++...|++++|+.+|++++.. .|.+..+++.||.++...|++.+|+.+|.+++..
T Consensus 145 ~al~~~~-------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 145 SSCSYIC-------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHhCCCH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9988764 478999999999999999999999999999 5666889999999999999999999999999999
Q ss_pred CCCChhhHhhHHHHHHHHHH
Q 002286 780 APSNYTLRFDAGVAMQKFSA 799 (942)
Q Consensus 780 ~p~~~~~~~~la~~~~~~~~ 799 (942)
.|..+.++.||+.++.+...
T Consensus 216 ~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 216 KFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp SBCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999998776543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.5e-13 Score=115.32 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
-+...|..++..|+|++|+..|.+++..+|++ +.++..+|.++..+|++++|+..|.++++++|+++.+++.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence 45678999999999999999999999999999 78899999999999999999999999999999999999999999999
Q ss_pred hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
.|+ +++|+..|+++++.+|+++.++..++.+.
T Consensus 84 ~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 84 LNR---FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999 99999999999999999998888777653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=5.7e-13 Score=120.82 Aligned_cols=112 Identities=12% Similarity=0.113 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHc
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~ 210 (942)
+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHHHHc
Confidence 45578999999999999999999999999999999999999999999999999999999999999 77799999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
|++++|+..|++++.++|+++.++..++.+...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~ 124 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 124 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988887766433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=1.9e-13 Score=138.60 Aligned_cols=219 Identities=15% Similarity=0.082 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----CCchhhHhhHHHHHHHcCCHHHHH
Q 002286 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-----SCPGAIRLGIGLCRYKLGQLGKAR 217 (942)
Q Consensus 143 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~~la~~~~~~g~~~~A~ 217 (942)
+|++|..+|.++ |.++...|+|++|+..|.+++...+ ......+..+|.||..+|++++|+
T Consensus 32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 466777666654 6677788888888888888877632 112456777888888888888888
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHh-hccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002286 218 QAFQRALQLDPEN------VEALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (942)
Q Consensus 218 ~~~~~al~~~p~~------~~~~~~l~~~~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 290 (942)
..|++++++.+.. ..++..+|.++.. .|+ +++|+..|++++.+.+..
T Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~A~~l~~~~----------------------- 151 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDCYELAGEWYAQD----------------------- 151 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHH---HHHHHHHHHHHHHHHHhc-----------------------
Confidence 8888888765433 3345555655543 455 666776666665543211
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc----hhhhhcHHHHHHHcCChHHHHHHHH
Q 002286 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF----IFPYYGLGQVQLKLGDFRSALTNFE 366 (942)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~ 366 (942)
+..+....++..+|.++...|++++|+..|.+++...+..+.. ...+...|.++...|++..|...++
T Consensus 152 --------~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~ 223 (290)
T d1qqea_ 152 --------QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (290)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1112234667788888999999999999998888754333221 1234567788888899999999999
Q ss_pred HHHHhCCCcHH-----HHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCc
Q 002286 367 KVLEIYPDNCE-----TLKALGHIYVQ--LGQIEKAQELLRKAAKIDPRD 409 (942)
Q Consensus 367 ~~l~~~p~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~ 409 (942)
++++.+|.... .+..++.++.. .+.+++|+..|.++.+++|..
T Consensus 224 ~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~ 273 (290)
T d1qqea_ 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (290)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHH
Confidence 98888775433 33445445444 346888888888777766543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.1e-14 Score=157.36 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002286 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 146 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (942)
+|+++|++++...|+.+.+++++|.++..+|++++| |++++..+|+. ...+...+ .+++. .+..++..++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~-a~~~~~e~-~Lw~~-~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY-ALDKKVEQ-DLWNH-AFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH-HHHHTHHH-HHHHH-HTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh-HHHHhHHH-HHHHH-HHHHHHHHHHHhcc
Confidence 456666666666666666666666666666666554 56666666544 22221111 11211 13344555555443
Q ss_pred hCC--CCHH-HHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 002286 226 LDP--ENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (942)
Q Consensus 226 ~~p--~~~~-~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~ 302 (942)
... +... ....++.+....+. |..++..+.+++..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~---Y~~ai~~l~~~~~l~~------------------------------------- 117 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGF---YTQLLQELCTVFNVDL------------------------------------- 117 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHH---HHHHHHHHTC-------------------------------------------
T ss_pred cccCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCh-------------------------------------
Confidence 321 1111 11122223333333 4444444444444444
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 002286 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (942)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (942)
.....+..+|..+...|+++.|...+.+++.. ....++..+|.++...|++++|+.+|.+++..+|++..+++.+
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp -------------------------CCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 34456667777777777777777777777652 2345677889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 002286 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (942)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 420 (942)
|.++...|+..+|+.+|.+++...|..+.++.+++.++
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=2.7e-13 Score=137.44 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=145.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHH
Q 002286 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDL 416 (942)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l 416 (942)
|.+|...|++++|+.+|.+++.+. ++...++..+|.+|...|++++|+..+++++.+.+.. ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 566777788888888888877752 2234678888999999999999999999988875443 5677788
Q ss_pred HHHH-h-cCCHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhh
Q 002286 417 GELL-I-SSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (942)
Q Consensus 417 a~~~-~-~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (942)
|.++ . .|++++|+..|++++.+.+..+.+. ...++.++|.++...|++++|+..|++++...+....
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~---------- 193 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL---------- 193 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT----------
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh----------
Confidence 8887 4 6999999999999999887654322 2367899999999999999999999999884321100
Q ss_pred hhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH-----HHHHHHH
Q 002286 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-----YLRLAAI 568 (942)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~l~~~ 568 (942)
........+...+.++...|++..|...+.+++..+|....+ ...++..
T Consensus 194 --------------------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a 247 (290)
T d1qqea_ 194 --------------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (290)
T ss_dssp --------------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred --------------------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 112234556778888889999999999999999988865443 2333333
Q ss_pred HHH--cCChhHHHHHHHHHHhhc
Q 002286 569 AKA--RNNLQLSIELVNEALKVN 589 (942)
Q Consensus 569 ~~~--~~~~~~A~~~~~~~l~~~ 589 (942)
+.. .+.+++|+..|.++.+++
T Consensus 248 ~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 248 VNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHhcCHHHHHHHHHHHHHHhhcC
Confidence 332 234677777776655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.1e-13 Score=124.37 Aligned_cols=139 Identities=13% Similarity=0.209 Sum_probs=120.6
Q ss_pred hhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC
Q 002286 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ 712 (942)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 712 (942)
..|.. +... |+++.|++.|.+ ..|.++.+++++|.++...|++++|+..|+++++.+| .
T Consensus 10 ~~g~~-~~~~------------~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-----~ 68 (192)
T d1hh8a_ 10 NEGVL-AADK------------KDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-----H 68 (192)
T ss_dssp HHHHH-HHHT------------TCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred HHHHH-HHHC------------CCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-----h
Confidence 44666 6666 999999999986 3566788999999999999999999999999999998 8
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC--------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--------------AQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 778 (942)
.+.+|+++|.++..+|++++|+..|++++...+.++. ..+++.+|.++...|++++|.+.+.+++.
T Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999999999986443221 57899999999999999999999999999
Q ss_pred hCCCChhhHhhHHH
Q 002286 779 LAPSNYTLRFDAGV 792 (942)
Q Consensus 779 ~~p~~~~~~~~la~ 792 (942)
+.|+......+.|+
T Consensus 149 ~~~~~~~~~~~~Al 162 (192)
T d1hh8a_ 149 MKSEPRHSKIDKAM 162 (192)
T ss_dssp TCCSGGGGHHHHHH
T ss_pred cCCCcchHHHHHHH
Confidence 99986555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.2e-12 Score=122.37 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCC
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 212 (942)
..|..+...|+|++|+..|.++ .|.++.+++.+|.++...|++++|+..|+++++++|+. +.+++.+|.++..+|+
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-hhhHHHHHHHHHhhcc
Confidence 3455555555555555555432 33445555555555555555555555555555555555 4445555555555555
Q ss_pred HHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCC
Q 002286 213 LGKARQAFQRALQLDPEN----------------VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (942)
Q Consensus 213 ~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 266 (942)
+++|+..|++++...|.+ ..+++.+|.++...|+ +++|+..+.+++...|.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~---~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 555555555555443322 2344555555555555 55555555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-12 Score=118.31 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002286 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (942)
Q Consensus 163 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 242 (942)
..+...|..+++.|+|++|+..|+++++.+|++ ...|+.+|.|+..+|++++|+..|+++++++|++..++..+|.++.
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhh-hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 346678999999999999999999999999999 8889999999999999999999999999999999999999999999
Q ss_pred hhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002286 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (942)
Q Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 278 (942)
..|+ +++|+..+++++.++|+++.++..++.+.
T Consensus 90 ~~g~---~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 90 ALGK---FRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp HTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999 99999999999999999998887776553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.4e-11 Score=112.50 Aligned_cols=121 Identities=13% Similarity=0.184 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCC----------chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ----------MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
.+...|..+...|++++|+..|++++...|...... ...++.++|.||..+|++++|+..+++++.. +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~ 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--c
Confidence 455678999999999999999999999877543221 2356789999999999999999999999999 6
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHHHH
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 799 (942)
|.++.+++.+|.+|+..|++++|+..|++++.++|+++.+...++.+...+..
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999998665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=6.2e-13 Score=112.65 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 002286 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ---GNFALAMKMYQNCLRKFYYNTDAQILLY 755 (942)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~ 755 (942)
..++..+...+++++|.+.|++++...| .++.+++++|+++... +++.+|+..|++++...|.+..+.+++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 4567778888899999999999999998 7899999999999864 5566799999999987443333668999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 756 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
+|.+|+..|++++|+++|++++.++|++..++...+.|.++.
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888875544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=7.5e-13 Score=126.20 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=90.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHH
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 206 (942)
+...+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+|...|+|++|+..|++++.++|++ ..+|+.+|.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHH
Confidence 445677888889999999999999999988899888888889999999999999999999998888888 6778888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002286 207 RYKLGQLGKARQAFQRALQLDPENVEA 233 (942)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 233 (942)
+..+|++++|+..|+++++++|++...
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 999999999999999888887754433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.36 E-value=3.4e-12 Score=107.01 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..++..|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++ ..+++.+|.+|.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHH
Confidence 4667888888888888888888888888888888888888888888888888888888888888888 677888888888
Q ss_pred HcCCHHHHHHHHHHHH
Q 002286 209 KLGQLGKARQAFQRAL 224 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al 224 (942)
..|++++|+..+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888888865
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.9e-11 Score=111.51 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---------------PALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
.+...|..++..|+|++|+..|.+++...|... .++..+|.+++..|+|++|+..+++++.++|+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 455678888888888888888888888766431 34556777777777777777777777777777
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 246 (942)
+ +.+++.+|.|+..+|++++|+..|+++++++|+++.+...++.+....+.
T Consensus 95 ~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 95 N-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred c-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 7 56677777777777777777777777777777777777777766555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=1.7e-12 Score=123.76 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
+...+...|..++..|+|++|+..|++++..+|.+ +.+|..+|.||..+|++++|+..|+++++++|+++.+|+.+|.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56778899999999999999999999999999999 78899999999999999999999999999999999999999999
Q ss_pred HHhhccHHhHHHHHHHHHHHHHhCCCCHH
Q 002286 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (942)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 269 (942)
+...|+ +++|+..|++++.++|++..
T Consensus 82 ~~~l~~---~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 82 QLEMES---YDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCC---HHHHHHHHHHHHHhCcccHH
Confidence 999999 99999999999998876553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.9e-12 Score=108.47 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCc-hhhHhhHHHHHH
Q 002286 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRY 208 (942)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~ 208 (942)
.++..+...+++++|.+.|++++..+|+++.+++.+|.+++.. +++.+|+.+|++++..+|.+. ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999864 456679999999998887652 347889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
.+|++++|+.+|+++++++|++..+...++.+....
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877765443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.31 E-value=3.1e-11 Score=107.83 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-----------PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
+...|..+...|+|.+|+..|.+++...+....... ..++.|+|.+|..+|++++|+..|++++.. +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~ 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 97 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--c
Confidence 445678888999999999999999987764432221 246789999999999999999999999998 6
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
|.++.+++.+|.++...|++++|+..|+++++++|+|+.+..++..+.+++
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999876654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.28 E-value=1.8e-09 Score=107.33 Aligned_cols=222 Identities=16% Similarity=0.185 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHH
Q 002286 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLK 380 (942)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (942)
|.+++.+|..+...|++.+|+.+|+++.+ .....+++.||.+|.. ..++..|..++..+.. +.++.+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-----~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhh
Confidence 46778888888888888888888888875 3456778888888876 6678888888888765 44667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-h----cCCHhHHHHHHHHHHHHHHHcCCCCCHHHH
Q 002286 381 ALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (942)
Q Consensus 381 ~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (942)
.+|.++.. .++.+.|...++.+....+. .+...++..+ . ......+...+...... .....+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~ 145 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGC 145 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccCCCcccchhHHHHHHhhhhhcc-------cccchh
Confidence 77777665 35777888888887766543 3344444444 2 22344444444443221 135666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCcchhH
Q 002286 452 NNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (942)
Q Consensus 452 ~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (942)
..+|..+.. ..+...+..++..+.+. .++.+
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---------------------------------------------g~~~A 180 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDL---------------------------------------------KDSPG 180 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------------------TCHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhccccc---------------------------------------------ccccc
Confidence 677777664 34555666666665542 25566
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhhc
Q 002286 528 LFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVN 589 (942)
Q Consensus 528 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~ 589 (942)
.+++|.++.. ..++++|+.+|.++.+. .++.+.+.||.++.. ..++.+|..+|+++....
T Consensus 181 ~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 181 CFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6777766665 45667777777776654 345666677776664 336666777777766654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.27 E-value=8.8e-10 Score=109.58 Aligned_cols=232 Identities=17% Similarity=0.201 Sum_probs=138.2
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
||.+++.+|..++..|++.+|+.+|+++.+. .++.+++.+|.++.. ..++..|..++..+.... . +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~-~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--c-cchhhc
Confidence 4678888888888888888888888888654 477888888888876 568888888888876644 3 344566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcc-HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002286 203 IGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (942)
Q Consensus 203 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 277 (942)
+|.++.. .++.+.|...++.+....+ ..+...++..+..... ......++..+.+... +.++..+..++..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence 6766654 3577788888888776543 4555555555543111 1125555555554433 3444555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHH---
Q 002286 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--- 354 (942)
Q Consensus 278 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~--- 354 (942)
+..... ...+...+..++..+.+ .....+.+.+|.++..
T Consensus 152 ~~~~~~---------------------------------~~~~~~~~~~~~~~a~~-----~g~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 152 YDAGRG---------------------------------TPKDLKKALASYDKACD-----LKDSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp HHHTSS---------------------------------SCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTCS
T ss_pred hccCCC---------------------------------cccccccchhhhhcccc-----ccccccccchhhhcccCcc
Confidence 543110 12344445555555443 2344455555555554
Q ss_pred -cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 002286 355 -LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDP 407 (942)
Q Consensus 355 -~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p 407 (942)
..++++|+.+|.++.+. .++.+++.||.+|.. ..++++|..+|+++....+
T Consensus 194 ~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 194 ATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 44566666666665553 345555666666554 2355566666666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.27 E-value=2.7e-11 Score=101.36 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 164 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
..+.+|.++++.|++.+|+..|++++..+|++ +.++..+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc-chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34667777888888888888888888888877 66777788888888888888888888888888888888888888888
Q ss_pred hccHHhHHHHHHHHHHHH
Q 002286 244 ANEAAGIRKGMEKMQRAF 261 (942)
Q Consensus 244 ~~~~~~~~~A~~~~~~~~ 261 (942)
.|+ +++|++.+++.+
T Consensus 97 ~g~---~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHN---ANAALASLRAWL 111 (112)
T ss_dssp HHH---HHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHh
Confidence 877 778877777754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.26 E-value=5.5e-11 Score=106.13 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 193 (942)
.+...|..++..|+|.+|+..|.+++...|... .++..+|.+++..|++++|+..+++++..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 345577888888999999999988887655321 1233445555555555555555555555555
Q ss_pred CCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002286 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (942)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 240 (942)
.+ ..+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus 99 ~~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 99 NN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred hh-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55 34455555555555555555555555555555555544444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.26 E-value=2.5e-12 Score=117.83 Aligned_cols=134 Identities=18% Similarity=0.089 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhh
Q 002286 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (942)
Q Consensus 43 ~~~~a~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~ 122 (942)
....|..+++.|+|.+|+..+.+++...+.. .+.........
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~--------------------------------------~~~~~~~~~~~ 71 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------------------------------------RAAAEDADGAK 71 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------HHHSCHHHHGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--------------------------------------hhhhhhHHHHH
Confidence 5677889999999999999998875321100 11111122334
Q ss_pred cCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhh
Q 002286 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (942)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 202 (942)
.+|.....+..+|.++...|++++|+..|.++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+...
T Consensus 72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~ 150 (169)
T d1ihga1 72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAE 150 (169)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4555666777788888888888888888888888888888888888888888888888888888888888877 566666
Q ss_pred HHHHHHHcCCHHH
Q 002286 203 IGLCRYKLGQLGK 215 (942)
Q Consensus 203 la~~~~~~g~~~~ 215 (942)
++.+........+
T Consensus 151 l~~~~~~l~~~~~ 163 (169)
T d1ihga1 151 LLKVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766655544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.25 E-value=2.5e-10 Score=103.84 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC----------CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCC
Q 002286 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV----------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (942)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 746 (942)
.+...|..+...|++.+|+..|.+++...+..... ....++.|+|.||..+|++.+|+..++.++.. +
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~ 94 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D 94 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--c
Confidence 35567999999999999999999999877643321 12346789999999999999999999999999 6
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHHHHHHH
Q 002286 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (942)
Q Consensus 747 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 797 (942)
|.++.+++.+|.+|...|++++|+..|++++.++|+++.+...++.+....
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999998888874443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.23 E-value=2e-10 Score=104.52 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC------------chhhhhcHHHHHHHcCChHHHHHHHHHHHHhCC
Q 002286 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE------------FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (942)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (942)
..+...|..++..|+|.+|+..|.+++...+..+. ...++.++|.+|..+|++++|+..+++++.++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 44556677777777777777777777764433222 223467799999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-hcCCHh-HHHHHHHHHHH
Q 002286 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG-AALDAFKTART 437 (942)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~-~A~~~~~~a~~ 437 (942)
++..+++.+|.++..+|++++|+..|.+++.++|+++.+...++.+. ..+... .....|.++.+
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988887 544332 34444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.22 E-value=6.4e-11 Score=108.18 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 002286 131 WVGKGQLLLAKGEVEQASSAFKIVLEA----------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (942)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 194 (942)
+...|..++..|+|.+|+..|.++++. +|....++..+|.++...|+|++|+..|.++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 345677778888888888888877753 2333444555555566666666666666666666655
Q ss_pred CchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 002286 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (942)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 243 (942)
+ +.+++.+|.++..+|++++|+..|+++++++|++..+...++.+...
T Consensus 110 ~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 110 N-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred h-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5 45555566666666666666666666666666555555555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.21 E-value=2.7e-11 Score=106.72 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 002286 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (942)
Q Consensus 105 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~ 174 (942)
.+.+.|++|+..|+++++++|+++.+++.+|.++...+ .+++|+..|+++++++|+++.+++.+|.++..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 45677889999999999999999999999999988654 44667777777777777777777777777766
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 002286 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (942)
Q Consensus 175 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 244 (942)
.|++. +.. ....+.+++|..+|+++++++|++..++..|+.+....
T Consensus 88 ~g~~~-------------~~~-----------~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 88 FAFLT-------------PDE-----------TEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHC-------------CCH-----------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred cccch-------------hhH-----------HHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 54320 000 00012356666667777777777666666666655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=9.7e-11 Score=100.78 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch------hhHhhH
Q 002286 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG------AIRLGI 203 (942)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~~l 203 (942)
.+-.+|..++..|+|++|+.+|++++..+|+++.++..+|.++...|+|++|+..|++++.++|..+. .++..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999887732 356678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 002286 204 GLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (942)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 234 (942)
|.++..++++++|+.+|++++..+|+ ++..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT-PDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-HHHH
Confidence 88888899999999999999988775 4443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.19 E-value=5.1e-11 Score=104.86 Aligned_cols=126 Identities=14% Similarity=0.035 Sum_probs=92.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHH
Q 002286 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (942)
Q Consensus 138 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (942)
+-+.+.|++|+..|+++++.+|+++.+++.+|.++...+++..+.. ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHH
Confidence 3455667777888888877788777777777777776655544332 123456777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhcc--------HHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002286 218 QAFQRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (942)
Q Consensus 218 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~ 288 (942)
..|+++++++|+++.+++.+|.++...|+ ...+.+|+..|++++.++|++...+..++.+....+.+.++.
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788877777777777776653 134899999999999999999999999998877666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.6e-10 Score=99.36 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-----H
Q 002286 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----A 750 (942)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 750 (942)
..+..+|..+...|+|++|+..|+++++.+| .++.++.++|.+|..+|++++|+..|++++...|.... .
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a 79 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3456789999999999999999999999998 78999999999999999999999999999998765554 4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCC
Q 002286 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (942)
Q Consensus 751 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 783 (942)
.++..+|.++...|++++|+.+|.+++..+|+.
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 678889999999999999999999999988754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.7e-10 Score=92.73 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=75.5
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhH
Q 002286 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (942)
Q Consensus 713 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 787 (942)
+++-++.+|.+++..|+|.+|+.+|+++++..|..+. +.++.+||.++++.|++++|+..++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 4677899999999999999999999999998765432 78999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 002286 788 FDAGVAMQ 795 (942)
Q Consensus 788 ~~la~~~~ 795 (942)
+|++.+.+
T Consensus 84 ~Nl~~~~~ 91 (95)
T d1tjca_ 84 GNLKYFEY 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.89 E-value=4.3e-09 Score=94.06 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCC---
Q 002286 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--- 747 (942)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 747 (942)
..+.|..+...|+|++|+..|+++++..|..+.. ....+|.++|.+|..+|++++|+..+++++..++..
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 91 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 91 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence 3345888889999999999999999998754211 124679999999999999999999999999876431
Q ss_pred -CC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHhhHHH
Q 002286 748 -TD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (942)
Q Consensus 748 -~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 792 (942)
.+ ..+++.+|.+|...|++++|+..|++++++.|......-....
T Consensus 92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~ 142 (156)
T d2hr2a1 92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 142 (156)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHH
Confidence 11 4478999999999999999999999999998866544444333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.85 E-value=5.7e-09 Score=93.28 Aligned_cols=107 Identities=15% Similarity=0.053 Sum_probs=87.4
Q ss_pred hHHHhhhhHHHHHHHhhhhcChhHHHHHHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHhcCCchHHHH
Q 002286 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------------LYAANGAGVVLAEKGQFDVSKD 696 (942)
Q Consensus 629 ~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~a~~~la~~~~~~g~~~~A~~ 696 (942)
+.++..|+. ++.. |+|++|+..|++++.+.|+. ..+++++|.+|...|++++|+.
T Consensus 10 ~~~l~~g~~-~~~~------------g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~ 76 (156)
T d2hr2a1 10 YLALSDAQR-QLVA------------GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH 76 (156)
T ss_dssp HHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhH
Confidence 444455777 7777 99999999999999988764 3578899999999999999999
Q ss_pred HHHHHHHHhcCCCCC------CchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhhCCCC
Q 002286 697 LFTQVQEAASGSVFV------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (942)
Q Consensus 697 ~~~~~~~~~p~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (942)
.+++++...|..... ....+++++|.+|..+|++++|+..|++++..++...
T Consensus 77 ~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 77 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 999999876532110 1244789999999999999999999999999876443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=9.5e-09 Score=82.25 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC------chhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002286 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (942)
Q Consensus 162 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 235 (942)
+.-++.+|.++++.|+|.+|+.+|+++++..|.. ...++..+|.++.++|++++|+..|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3445677777777777777777777777765443 1456777888888888888888888888888888888887
Q ss_pred HHHHHHH
Q 002286 236 ALAVMDL 242 (942)
Q Consensus 236 ~l~~~~~ 242 (942)
.++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.66 E-value=7.6e-09 Score=100.43 Aligned_cols=123 Identities=11% Similarity=-0.037 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
|++++|+..|+++++.+|.++.++..+|.+++..|++++|+..|+.+++.+|++..++..++.++...+...++...+..
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~ 89 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence 33445555555555555555555555555555555555555555555555555555555555544444433333322222
Q ss_pred HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (942)
.....+......+...+..+...|++++|...+.++.+..|..
T Consensus 90 ~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 1111111112223334444455555555555555555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.64 E-value=2e-08 Score=97.47 Aligned_cols=130 Identities=10% Similarity=-0.004 Sum_probs=92.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHH
Q 002286 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (942)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~ 214 (942)
+.-.+..|++++|+..|+++++.+|+++.++..++.++...|++++|+..|+++++.+|+. ...+..++.++...+...
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccccH
Confidence 3456677888888888888888888888888888888888888888888888888888877 555666777666555555
Q ss_pred HHHHHHHHHHh-hCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCH
Q 002286 215 KARQAFQRALQ-LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (942)
Q Consensus 215 ~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 268 (942)
++...+.+... ..|.....+...+.++...|+ +++|...+.++.+..|..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCCC
Confidence 54443333222 234445556666777777777 7788888888877777665
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.45 E-value=9.1e-07 Score=79.89 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHH
Q 002286 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (942)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 208 (942)
..++..|..+...|++++|...|.+++.+.|..+...+.. +.+- ......+.+.. ..++..++.++.
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~-----~~~r~~l~~~~-~~a~~~la~~~~ 78 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFV-----EPFATALVEDK-VLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTH-----HHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHH-----HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3566677777888888888888888887766543211110 0000 00111111111 334555666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHH
Q 002286 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (942)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~ 260 (942)
.+|++++|+..+++++..+|.+..+|..++.++...|+ +.+|+..|+++
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr---~~eAl~~y~~~ 127 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRV 127 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 66666666666666666666666666666666666666 66666655555
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.29 E-value=4.9e-06 Score=74.91 Aligned_cols=121 Identities=18% Similarity=0.072 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002286 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (942)
Q Consensus 81 ~~~~~~~~l~~~y~~~g~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 160 (942)
++...+...|......|+.+ +|+..|.+++.+.|......+..+ .+ .........+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e-----------~A~~~~~~AL~l~rG~~l~~~~~~-------~w-----~~~~r~~l~~~ 65 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFE-----------QASRHLSAALREWRGPVLDDLRDF-------QF-----VEPFATALVED 65 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTCCSSTTGGGTTS-------TT-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHhhCcccccccCcch-------HH-----HHHHHHHHHHH
Confidence 67778888888888888877 999999999999887654322111 11 11122223344
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002286 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (942)
Q Consensus 161 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (942)
...++..++.++...|++++|+..+++++..+|.+ ..+|..++.++...|++.+|+..|+++..
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999998 78899999999999999999999998843
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=3e-06 Score=68.47 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHHh---cCHHHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCChhhHh
Q 002286 713 MPDVWINLAHVYFAQ---GNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (942)
Q Consensus 713 ~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 788 (942)
.+.+.|+.||++.+. ++..+||.+++.+++. ++.+ ...+++||.+|++.|++++|++++++++++.|++..+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 478899999999966 4567999999999987 4444 589999999999999999999999999999999988776
Q ss_pred hHHHHHHHH
Q 002286 789 DAGVAMQKF 797 (942)
Q Consensus 789 ~la~~~~~~ 797 (942)
..-.|-.++
T Consensus 112 L~~~Ie~~~ 120 (124)
T d2pqrb1 112 LKSMVEDKI 120 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=1.3e-05 Score=64.61 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002286 162 VPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (942)
Q Consensus 162 ~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 238 (942)
+.+.+..|.++.+. .+.++|+.+++.++..+|....+.++.+|..|+++|++++|+.+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 56777777777654 345678888888887777665567788888888888888888888888888888877765554
Q ss_pred HH
Q 002286 239 VM 240 (942)
Q Consensus 239 ~~ 240 (942)
.+
T Consensus 115 ~I 116 (124)
T d2pqrb1 115 MV 116 (124)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.06 E-value=3.6e-05 Score=65.46 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCH
Q 002286 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (942)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~la~~~~~----~g~~ 730 (942)
.++++|+.+|+++.+.+ ++.+...++. ....+.++|+.+|+++.+. .++.+.+++|.+|.. ..++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc-------cchhhhhhHHHhhhhccccchhh
Confidence 78999999999998864 5566666654 3456889999999999885 468999999999986 4679
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCC
Q 002286 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAP 781 (942)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 781 (942)
.+|+++|+++.+. .++.+.+.||.+|.. ..+..+|+.+|+++.+...
T Consensus 76 ~~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 76 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999999999875 468899999999987 4589999999999988764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=0.017 Score=60.26 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCc-----------------------------HHHHHHHHHHHHHcCC
Q 002286 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY-----------------------------VDAYLRLAAIAKARNN 574 (942)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------------------~~~~~~l~~~~~~~~~ 574 (942)
.....|.+|+.+...|+.+.|...|..+.. .+++ ...-+..+..+...|.
T Consensus 318 ~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~ 396 (450)
T d1qsaa1 318 KDEWRYWQADLLLERGREAEAKEILHQLMQ-QRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNL 396 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCC
Confidence 455667777777777777777777776553 1111 1112344566677788
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHHHHHHHHHh
Q 002286 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (942)
Q Consensus 575 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (942)
...|...+..++.. .++.-...++.+..+.|.++.|+....++
T Consensus 397 ~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 397 DNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 88888777766543 34556667777778888888888777665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.79 E-value=0.00029 Score=59.55 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHH
Q 002286 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (942)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~ 182 (942)
+.++++|+.+|.++.+. .++.+.+.++. ....++++|+..|+++... .++.+.+.+|.++.. ..++.+|+
T Consensus 6 ~kd~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence 35788999999998875 35667776664 3456788888888887654 477888888888765 45678888
Q ss_pred HHHHHHHHhCCCCchhhHhhHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 002286 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLD 227 (942)
Q Consensus 183 ~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 227 (942)
.+|+++.+.. + +...+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 80 ~~~~~aa~~g--~-~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN--D-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC--c-chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888877654 2 4456677777776 357778888888777654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.068 Score=55.44 Aligned_cols=372 Identities=11% Similarity=-0.014 Sum_probs=204.8
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002286 151 FKIVLEADRDNVPALLGQ---ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (942)
Q Consensus 151 ~~~~l~~~p~~~~~~~~~---a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (942)
+...+..+|+.|...... ...+...+++...+..| ...|.+ ....+..+.+....|+...|...+..+....
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~-~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGT-TEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 455667788887654333 23445566665544333 224444 5556677888888888888888777766554
Q ss_pred CCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHH
Q 002286 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (942)
Q Consensus 228 p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (942)
+..+.....+ +........-.+..+...+......|++..|..+...+- +.....
T Consensus 133 ~~~p~~c~~l-------------------~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~------~~~~~~ 187 (450)
T d1qsaa1 133 KSQPNACDKL-------------------FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP------ADYQTI 187 (450)
T ss_dssp SCCCTHHHHH-------------------HHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC------GGGHHH
T ss_pred CCCchHHHHH-------------------HHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCC------hhHHHH
Confidence 4433322222 222222223334444455556666677776666654321 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH----H
Q 002286 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL----G 383 (942)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l----a 383 (942)
......+... ........ ... ............+..-....+.+.|...+.......+.....+... +
T Consensus 188 ~~a~~~l~~~---p~~~~~~~----~~~-~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a 259 (450)
T d1qsaa1 188 ASAIISLANN---PNTVLTFA----RTT-GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVA 259 (450)
T ss_dssp HHHHHHHHHC---GGGHHHHH----HHS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---hHhHHHHH----hcC-CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHH
Confidence 1111111111 11111111 111 1111112233344444556788889888888877665554433332 2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 002286 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (942)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (942)
......+..+.+...+........+.......++..+..+++..+...+..+.. .....+...+-+|..+...|+
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~-----~~~~~~r~~YW~gRa~~~~G~ 334 (450)
T d1qsaa1 260 WRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPM-----EAKEKDEWRYWQADLLLERGR 334 (450)
T ss_dssp HTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT-----TGGGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCc-----ccccHHHHHHHHHHHHHHcCC
Confidence 233344667778888777766555554444444544477888888777664421 112246778889999999999
Q ss_pred HHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhhhhhhhhhhhccCCCCCCCCCc---chhHHHHHHHHHhhcCC
Q 002286 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN---KVTVLFNLARLLEQIHD 540 (942)
Q Consensus 464 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~ 540 (942)
.+.|...|..+......-+. ...-. .+ ..+..........+. ........+..+...|.
T Consensus 335 ~~~A~~~~~~~a~~~~fYG~-------------LAa~~---Lg--~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~ 396 (450)
T d1qsaa1 335 EAEAKEILHQLMQQRGFYPM-------------VAAQR---IG--EEYELKIDKAPQNVDSALTQGPEMARVRELMYWNL 396 (450)
T ss_dssp HHHHHHHHHHHHTSCSHHHH-------------HHHHH---TT--CCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHhcCCChHHH-------------HHHHH---cC--CCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCC
Confidence 99999999988763211110 00000 00 000000000011111 11223456778889999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 002286 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (942)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 585 (942)
...|...+..++... +..-...++.+..+.|.++.|+....++
T Consensus 397 ~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 397 DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 999999998887543 4567778899999999999999877665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.93 E-value=0.17 Score=49.15 Aligned_cols=262 Identities=11% Similarity=0.053 Sum_probs=141.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhcHHHH
Q 002286 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (942)
Q Consensus 272 ~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 351 (942)
...|..++..|.|+.|..+|...- -+-.+..++...+++..|.....+. .....|..+...
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~--------~~~~~~k~~~~~ 78 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFA 78 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHc--------CCHHHHHHHHHH
Confidence 345566667777777777766432 2334556677778888877776654 233455566666
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCHhHHHHH
Q 002286 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431 (942)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~ 431 (942)
+.......-+..+ ... ...+++-...+...|...|.+++.+.+++.++...+.+...+..++.++..-+.++-++.
T Consensus 79 l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~ 154 (336)
T d1b89a_ 79 CVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 154 (336)
T ss_dssp HHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHH
Confidence 6665555433211 110 112344455566777778888888888888877777777777778777744445554444
Q ss_pred HHHH---------HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcchhhhhccccccchhhhhhhhhHhh
Q 002286 432 FKTA---------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (942)
Q Consensus 432 ~~~a---------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (942)
+... +..... ...|..+..+|.+.|+++.|+...-.-..
T Consensus 155 l~~~s~~y~~~k~~~~c~~------~~l~~elv~Ly~~~~~~~~A~~~~i~~~~-------------------------- 202 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQ------AHLWAELVFLYDKYEEYDNAIITMMNHPT-------------------------- 202 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHT------TTCHHHHHHHHHHTTCHHHHHHHHHHSTT--------------------------
T ss_pred HHhccccCCHHHHHHHHHH------cCChHHHHHHHHhcCCHHHHHHHHHHcch--------------------------
Confidence 4332 111111 12234556677778888887776654221
Q ss_pred hhhhhhhhhccCCCCCCCCCcchhHHHHHHHHHhhcCCHHHHHHHHHHHHHhCCCcHHH----------HHHHHHHHHHc
Q 002286 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----------YLRLAAIAKAR 572 (942)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------~~~l~~~~~~~ 572 (942)
+..-....-.++.+.++++..-+...-.+..+|..... ..++.....+.
T Consensus 203 ---------------------~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 203 ---------------------DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp ---------------------TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred ---------------------hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 11112222233334444444333333334444433111 13344555667
Q ss_pred CChhHHHHHHHHHHhhcCCChhHHHHhhhhhccccchHH
Q 002286 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (942)
Q Consensus 573 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (942)
++..-...+++.... .++..+...++.+|...++++.
T Consensus 262 ~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 262 KQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp TCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH
Confidence 777777777777544 3356788889999999998644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.36 E-value=0.5 Score=45.67 Aligned_cols=210 Identities=14% Similarity=0.095 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002286 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (942)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 187 (942)
|.|+.|..+|+..- -+-....++...+++..|.+.+.+. +++..|......+.......-|..
T Consensus 28 ~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i---- 90 (336)
T d1b89a_ 28 KMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM---- 90 (336)
T ss_dssp -CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred CCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH----
Confidence 34447777776542 2445556777888888888877655 466777777777777666554321
Q ss_pred HHHhCCCCchhhHhhHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhccHHhHHHHHHHHHHHHHhCCCC
Q 002286 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (942)
Q Consensus 188 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 267 (942)
........+.-...+...|...|.+++.+..++.++...+.+...+..++.++.+.+. .+-++.+...- +..
T Consensus 91 -~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~----~kl~e~l~~~s--~~y- 162 (336)
T d1b89a_ 91 -CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP----QKMREHLELFW--SRV- 162 (336)
T ss_dssp -TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH----HHHHHHHHHHS--TTS-
T ss_pred -HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh----HHHHHHHHhcc--ccC-
Confidence 1111111123334566777788888888888888887777777777778877776543 33333332210 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 002286 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (942)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 347 (942)
+..++...+++ ...|-.+...|...|+++.|+...-.- +..+.-...
T Consensus 163 ---------------~~~k~~~~c~~-----------~~l~~elv~Ly~~~~~~~~A~~~~i~~-------~~~~~~~~~ 209 (336)
T d1b89a_ 163 ---------------NIPKVLRAAEQ-----------AHLWAELVFLYDKYEEYDNAIITMMNH-------PTDAWKEGQ 209 (336)
T ss_dssp ---------------CHHHHHHHHHT-----------TTCHHHHHHHHHHTTCHHHHHHHHHHS-------TTTTCCHHH
T ss_pred ---------------CHHHHHHHHHH-----------cCChHHHHHHHHhcCCHHHHHHHHHHc-------chhhhhHHH
Confidence 11222222221 123445666777788888887766432 221222233
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCc
Q 002286 348 LGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (942)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (942)
.-.++.+.++.+..-....-.++..|..
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~~p~~ 237 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEFKPLL 237 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHccCChHHHHHHHHHHHHcCHHH
Confidence 3455666677766666666666655543
|