Citrus Sinensis ID: 002287
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 942 | 2.2.26 [Sep-21-2011] | |||||||
| O04379 | 1048 | Protein argonaute 1 OS=Ar | yes | no | 0.884 | 0.794 | 0.786 | 0.0 | |
| Q6EU14 | 1082 | Protein argonaute 1A OS=O | yes | no | 0.974 | 0.848 | 0.716 | 0.0 | |
| Q7XSA2 | 1118 | Protein argonaute 1B OS=O | no | no | 0.851 | 0.717 | 0.807 | 0.0 | |
| Q5Z5B2 | 1038 | Protein argonaute 1D OS=O | no | no | 0.864 | 0.784 | 0.734 | 0.0 | |
| Q6K972 | 1011 | Protein argonaute 1C OS=O | no | no | 0.783 | 0.729 | 0.778 | 0.0 | |
| Q9XGW1 | 988 | Protein argonaute 10 OS=A | no | no | 0.781 | 0.744 | 0.750 | 0.0 | |
| Q69VD5 | 979 | Protein argonaute PNH1 OS | no | no | 0.785 | 0.755 | 0.749 | 0.0 | |
| Q851R2 | 1058 | Protein argonaute MEL1 OS | no | no | 0.783 | 0.697 | 0.580 | 0.0 | |
| Q9SJK3 | 997 | Protein argonaute 5 OS=Ar | no | no | 0.835 | 0.789 | 0.527 | 0.0 | |
| Q7Y001 | 1049 | Protein argonaute 12 OS=O | no | no | 0.771 | 0.693 | 0.535 | 0.0 |
| >sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1380 bits (3571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/870 (78%), Positives = 746/870 (85%), Gaps = 37/870 (4%)
Query: 89 EYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSG 148
EYQGRGRGGPP G G G G GG S GP + +PELHQAT +P
Sbjct: 79 EYQGRGRGGPPH---------QGGRGGYGGGRGGGPSSGPPQRQSVPELHQAT-SPTYQA 128
Query: 149 VMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRG 208
V +QPT S+ S + PE + ++QQF+QLS+ E+ + SQ IQP P SSK+ +FP+RPG+G
Sbjct: 129 VSSQPTLSEV-SPTQVPEPTVLAQQFEQLSV-EQGAPSQAIQPIPSSSKAFKFPMRPGKG 186
Query: 209 STGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLP 268
+G RCIVKANHFFAELPDKDLH YDVTITPEVTSRGVNRAVM+QLV YR+SHLG RLP
Sbjct: 187 QSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLP 246
Query: 269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFL 328
AYDGRKSLYTAGPLPF SKEFRI LLD++ G GGQRREREFKVVIKL ARADLHHLG+FL
Sbjct: 247 AYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFL 306
Query: 329 QGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIR 388
+G+Q+DAPQEALQVLDIVLRELPT+RY PVGRSFYSPD+G++Q LG+GLESWRGFYQSIR
Sbjct: 307 EGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIR 366
Query: 389 PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
PTQMGLSLNIDMSSTAFIE PVI FV LLNRD+SSRPLSDADRVKIKKALRGV+VEVT
Sbjct: 367 PTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVT 426
Query: 449 HRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508
HRGNMRRKYRISGLT+ T ELTFPVDE T KSVVEYF+ETYGF IQHTQ PCLQVGN
Sbjct: 427 HRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNS 486
Query: 509 QRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPY 568
RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP +RE+DI+QTV N Y +D Y
Sbjct: 487 NRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNY 546
Query: 569 AREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWI 628
A+EFGIKIS LASVEARILP PWLKYH++G+E CLPQVGQWNMMNKKM+NGGTVN+WI
Sbjct: 547 AQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWI 606
Query: 629 CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMT 688
CINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE VEKVLKTRYHDA +
Sbjct: 607 CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATS 666
Query: 689 KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALK 748
KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQYMANVALK
Sbjct: 667 KLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALK 726
Query: 749 INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEV 808
INVKVGGRNTVLVDA+SRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE+
Sbjct: 727 INVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEI 786
Query: 809 TKYAGLVCAQAHRQELIQDLFKTWQDPGTPYI-------------------------FPD 843
TKYAGLVCAQAHRQELIQDLFK W+DP + + D
Sbjct: 787 TKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRD 846
Query: 844 GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRS 903
GVSEGQFYQVLLYELDAIRKACASLE YQPPVTFVVVQKRHHTRLFA NH+DR++VDRS
Sbjct: 847 GVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRS 906
Query: 904 GNILPGTVVDSKICHPTEFDFYLCSHAGIQ 933
GNILPGTVVDSKICHPTEFDFYLCSHAGIQ
Sbjct: 907 GNILPGTVVDSKICHPTEFDFYLCSHAGIQ 936
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Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 942 | ||||||
| 255570639 | 1063 | eukaryotic translation initiation factor | 0.975 | 0.864 | 0.830 | 0.0 | |
| 225464279 | 1085 | PREDICTED: protein argonaute 1-like [Vit | 0.986 | 0.856 | 0.797 | 0.0 | |
| 296088013 | 1038 | unnamed protein product [Vitis vinifera] | 0.960 | 0.871 | 0.788 | 0.0 | |
| 224120474 | 1062 | argonaute protein group [Populus trichoc | 0.848 | 0.752 | 0.866 | 0.0 | |
| 356531036 | 1058 | PREDICTED: protein argonaute 1-like [Gly | 0.969 | 0.862 | 0.817 | 0.0 | |
| 356560055 | 1053 | PREDICTED: protein argonaute 1-like [Gly | 0.966 | 0.864 | 0.798 | 0.0 | |
| 449439225 | 1064 | PREDICTED: protein argonaute 1A-like [Cu | 0.974 | 0.862 | 0.816 | 0.0 | |
| 409127948 | 1054 | AGO1A [Solanum lycopersicum] gi|40989306 | 0.959 | 0.857 | 0.781 | 0.0 | |
| 84688906 | 1052 | AGO1-1, partial [Nicotiana benthamiana] | 0.962 | 0.862 | 0.779 | 0.0 | |
| 298676333 | 1061 | ARGONAUTE 1 [Nicotiana tabacum] | 0.969 | 0.860 | 0.774 | 0.0 |
| >gi|255570639|ref|XP_002526275.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223534406|gb|EEF36112.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1533 bits (3969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/961 (83%), Positives = 840/961 (87%), Gaps = 42/961 (4%)
Query: 1 MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGP 60
MVRK+RTE P++GGESSE E ++GG SQRP ER+A G G GR WGP
Sbjct: 1 MVRKRRTEAPASGGESSEPHEAASGG---SQRPYERNA----PPQQGPGGPYQGGRSWGP 53
Query: 61 PSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGG 120
SQQGGRGG G GR G QQQ YGG EYQGRGRG G G G G S
Sbjct: 54 QSQQGGRGGGGRGRSGGMSQQQQYGGGPEYQGRGRGP------PQQGGRGGYGGGRSSSN 107
Query: 121 RGGH-SGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEV--SQQFQQL 177
RGG S GP+R +PELHQAT P+ +GV Q S+ SSS PE S V +QQ Q+L
Sbjct: 108 RGGPPSVGPSRPP-VPELHQATLAPYQAGVSPQLMPSEGSSSSGPPEPSPVVVAQQMQEL 166
Query: 178 SLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTI 237
S+ +EVSSSQ IQ PPSSKS+RFPLRPG+GSTG RCIVKANHFFAELPDKDLHQYDVTI
Sbjct: 167 SIQQEVSSSQPIQAPPPSSKSMRFPLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVTI 226
Query: 238 TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDD 297
TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF+SKEF+ITL+D+D
Sbjct: 227 TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFKITLIDED 286
Query: 298 DGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 357
DG GGQRREREF+VVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP
Sbjct: 287 DGSGGQRREREFRVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 346
Query: 358 VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQ 417
VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFV Q
Sbjct: 347 VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVNQ 406
Query: 418 LLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES 477
LLNRDVSSRPLSDADRVKIKKALRGV+VEVTHRGNMRRKYRISGLTSQ T ELTFPVDE
Sbjct: 407 LLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDER 466
Query: 478 GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQIT 537
GT+KSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCK+VEGQRYSKRLNERQIT
Sbjct: 467 GTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKVVEGQRYSKRLNERQIT 526
Query: 538 ALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 597
ALLKVTCQRP ERERDIMQTVHHNAY DPYA+EFGIKISEKLASVEARILPAPWLKYHD
Sbjct: 527 ALLKVTCQRPQERERDIMQTVHHNAYGNDPYAKEFGIKISEKLASVEARILPAPWLKYHD 586
Query: 598 TGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGM 657
TG+EKDCLPQVGQWNMMNKKMVNGGTVN+WICINFSR+VQDS+ARGFC+ELAQMCYISGM
Sbjct: 587 TGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCYELAQMCYISGM 646
Query: 658 AFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRI 717
AFNPEPV+PP+SARPE VEKVLKTRYHDAMTKL QGKELDLLIVILPDNNGSLYG+LKRI
Sbjct: 647 AFNPEPVLPPVSARPEQVEKVLKTRYHDAMTKLQQGKELDLLIVILPDNNGSLYGELKRI 706
Query: 718 CETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTI 777
CETDLGLVSQCCLTKHVF+M+KQY+ANVALKINVKVGGRNTVLVDA+SRRIPLVSDRPTI
Sbjct: 707 CETDLGLVSQCCLTKHVFRMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTI 766
Query: 778 IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGT 837
IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK WQDP
Sbjct: 767 IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKEWQDPVR 826
Query: 838 PYI-------------------------FPDGVSEGQFYQVLLYELDAIRKACASLEPNY 872
+ + DGVSEGQFYQVLLYELDAIRKACASLEPNY
Sbjct: 827 GRVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 886
Query: 873 QPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 932
QPPVTFVVVQKRHHTRLFANNH+DRNAVD+SGNILPGTVVDSKICHPTEFDFYLCSHAGI
Sbjct: 887 QPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGI 946
Query: 933 Q 933
Q
Sbjct: 947 Q 947
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225464279|ref|XP_002271225.1| PREDICTED: protein argonaute 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296088013|emb|CBI35296.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224120474|ref|XP_002318338.1| argonaute protein group [Populus trichocarpa] gi|222859011|gb|EEE96558.1| argonaute protein group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356531036|ref|XP_003534084.1| PREDICTED: protein argonaute 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356560055|ref|XP_003548311.1| PREDICTED: protein argonaute 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449439225|ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] gi|449523970|ref|XP_004168996.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|409127948|gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1| argonaute1-1, partial [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|84688906|gb|ABC61502.1| AGO1-1, partial [Nicotiana benthamiana] | Back alignment and taxonomy information |
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| >gi|298676333|dbj|BAJ09698.1| ARGONAUTE 1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 942 | ||||||
| TAIR|locus:2170897 | 988 | AGO10 "ARGONAUTE 10" [Arabidop | 0.677 | 0.645 | 0.746 | 4.3999999281e-317 | |
| UNIPROTKB|Q69VD5 | 979 | PHN1 "Protein argonaute PNH1" | 0.685 | 0.659 | 0.746 | 5.4e-312 | |
| UNIPROTKB|Q851R2 | 1058 | MEL1 "Protein argonaute MEL1" | 0.678 | 0.603 | 0.570 | 8.6e-241 | |
| TAIR|locus:2057851 | 997 | AGO5 "ARGONAUTE 5" [Arabidopsi | 0.716 | 0.677 | 0.523 | 4.5e-224 | |
| ZFIN|ZDB-GENE-060503-452 | 867 | ago3b "argonaute RISC catalyti | 0.772 | 0.839 | 0.412 | 9.9e-142 | |
| UNIPROTKB|F1P3Z0 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.770 | 0.844 | 0.413 | 1.3e-141 | |
| MGI|MGI:1924100 | 861 | Ago4 "argonaute RISC catalytic | 0.660 | 0.722 | 0.376 | 1.3e-141 | |
| UNIPROTKB|F1MG44 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.753 | 0.825 | 0.419 | 2.1e-141 | |
| UNIPROTKB|Q9H9G7 | 860 | EIF2C3 "Protein argonaute-3" [ | 0.753 | 0.825 | 0.419 | 2.1e-141 | |
| UNIPROTKB|F1LUQ5 | 860 | Eif2c4 "Protein Eif2c4" [Rattu | 0.658 | 0.720 | 0.376 | 2.1e-141 |
| TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2547 (901.6 bits), Expect = 4.4e-317, Sum P(3) = 4.4e-317
Identities = 478/640 (74%), Positives = 549/640 (85%)
Query: 197 KSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVK 256
K+ F RPG G+ GT+CIVKANHF A+LP KDL+QYDVTITPEV+S+ VNRA++ +LV+
Sbjct: 124 KNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVR 183
Query: 257 LYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLXXXXXXXXX-XXXXXFKVVIKL 315
LY+ES LG+RLPAYDGRKSLYTAG LPF KEF + ++ +KV IK
Sbjct: 184 LYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSYKVAIKF 243
Query: 316 AARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGE 375
ARA++HHLG FL G++AD PQEA+Q+LDIVLREL R+CPVGRSF+SPD+ Q LGE
Sbjct: 244 VARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGE 303
Query: 376 GLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVK 435
GLESW GFYQSIRPTQMGLSLNIDM+S AFIEPLPVI+FV QLL +DV S+PLSD+DRVK
Sbjct: 304 GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVK 363
Query: 436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVI 495
IKK LRGV+VEVTHR N+RRKYR++GLT+Q T EL FPVDE+ T+KSV+EYF E YGF I
Sbjct: 364 IKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMKSVIEYFQEMYGFTI 423
Query: 496 QHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIM 555
QHT PCLQVGNQ++ +YLPME CKIVEGQRY+KRLNE+QITALLKVTCQRP +RE DI+
Sbjct: 424 QHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDIL 483
Query: 556 QTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMN 615
+TV HNAY +DPYA+EFG+ ISEKLASVEARILPAPWLKYH+ GKEKDCLPQVGQWNMMN
Sbjct: 484 RTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMN 543
Query: 616 KKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHV 675
KKM+NG TV+ W C+NFSR VQ+++ARGFC EL QMC +SGM FNPEPVIP SARP+ V
Sbjct: 544 KKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNPEPVIPIYSARPDQV 603
Query: 676 EKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735
EK LK YH +M K +GKEL+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVF
Sbjct: 604 EKALKHVYHTSMNKT-KGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVF 662
Query: 736 KMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS 795
K+SKQY+ANV+LKINVK+GGRNTVLVDAIS RIPLVSD PTIIFGADVTHP GE+SSPS
Sbjct: 663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPS 722
Query: 796 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDP 835
IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL+KTWQDP
Sbjct: 723 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDP 762
|
|
| UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060503-452 ago3b "argonaute RISC catalytic component 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1924100 Ago4 "argonaute RISC catalytic subunit 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EU14 | AGO1A_ORYSJ | No assigned EC number | 0.7169 | 0.9745 | 0.8484 | yes | no |
| O04379 | AGO1_ARATH | No assigned EC number | 0.7862 | 0.8842 | 0.7948 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000886001 | SubName- Full=Chromosome undetermined scaffold_109, whole genome shotgun sequence; (1080 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 942 | |||
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 1e-174 | |
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 1e-150 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 4e-78 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 6e-69 | |
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 5e-49 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 9e-43 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 1e-42 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 1e-36 | |
| pfam12764 | 102 | pfam12764, Gly-rich_Ago1, Glycine-rich region of a | 9e-27 | |
| pfam08699 | 52 | pfam08699, DUF1785, Domain of unknown function (DU | 4e-23 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 2e-12 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 2e-11 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 6e-08 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 1e-07 | |
| pfam12810 | 248 | pfam12810, Gly_rich, Glycine rich protein | 1e-07 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 3e-06 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 4e-06 | |
| pfam05268 | 261 | pfam05268, GP38, Phage tail fibre adhesin Gp38 | 8e-06 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 1e-05 | |
| pfam06682 | 317 | pfam06682, DUF1183, Protein of unknown function (D | 1e-05 | |
| pfam02084 | 239 | pfam02084, Bindin, Bindin | 1e-05 | |
| pfam07172 | 91 | pfam07172, GRP, Glycine rich protein family | 3e-05 | |
| pfam06682 | 317 | pfam06682, DUF1183, Protein of unknown function (D | 1e-04 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-04 | |
| smart00157 | 218 | smart00157, PRP, Major prion protein | 2e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 9e-04 | |
| pfam07466 | 280 | pfam07466, DUF1517, Protein of unknown function (D | 0.001 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.003 | |
| PRK06958 | 182 | PRK06958, PRK06958, single-stranded DNA-binding pr | 0.003 | |
| pfam06273 | 496 | pfam06273, eIF-4B, Plant specific eukaryotic initi | 0.003 | |
| pfam04959 | 211 | pfam04959, ARS2, Arsenite-resistance protein 2 | 0.003 | |
| PRK07772 | 186 | PRK07772, PRK07772, single-stranded DNA-binding pr | 0.004 |
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
Score = 528 bits (1362), Expect = e-174
Identities = 290/822 (35%), Positives = 428/822 (52%), Gaps = 99/822 (12%)
Query: 178 SLPEEVSSSQVIQPAPPSSKSVRFPL-RPGRGSTGTRCIVKANHFFAEL--PDKDLHQYD 234
+P V ++ +P SK R P+ R G GS G + + NHF + PD Y
Sbjct: 10 VVPPNVVPIKL-EPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYS 68
Query: 235 VTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFR 290
V++T E V +G+ R V++++ + Y GK AYDG KSL+T G LP EF
Sbjct: 69 VSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDF-AYDGEKSLFTVGALPQNKLEFT 127
Query: 291 ITL---------------LDDDDGQGGQRRER------EFKVVIKLAARADLHHLGLFLQ 329
+ L + G ++R R FKV I AA+ + + L+
Sbjct: 128 VVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALR 187
Query: 330 GRQADAPQEALQVLDIVLRELPTTRYCPVGR-SFYSPDLGRRQPLGEGLESWRGFYQSIR 388
G++++ Q+AL+VLDI+LR+ + C + R SF+ D LG G+ RGF+ S R
Sbjct: 188 GQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR 247
Query: 389 PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
TQ GLSLNID+S+T ++P PV+DF+ + N++V P D K K+ L+ +RV+V+
Sbjct: 248 TTQGGLSLNIDVSTTMIVQPGPVVDFL--IANQNVRD-PFQ-IDWSKAKRMLKNLRVKVS 303
Query: 449 HRGNMRRKYRISGLTSQTTGELTFPV-------DESGTLK-SVVEYFYETYGFVIQHT-Q 499
N +Y+I+GL+ + E TF + +E T++ +V +YF + G ++++
Sbjct: 304 PS-NQ--EYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGD 360
Query: 500 WPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVH 559
PC+ VG +RP Y P+E+C +V QRY+K L+ Q ++L++ + Q+P ER + + +
Sbjct: 361 LPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALK 420
Query: 560 HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMV 619
+ Y DP R GI IS + VE R+LPAP LK G +D P+ G+WN NKK+V
Sbjct: 421 SSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLK---VGNGEDFFPRNGRWNFNNKKLV 477
Query: 620 NGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAF-NPEPVIP--PISAR---PE 673
+ W +NFS R +L + + G+ P V P R P
Sbjct: 478 EPTKIERWAVVNFSARCD---IRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPV 534
Query: 674 HVEKVLKTRYHDAMTKLGQGKELDLLIVILPD-NNGSLYGDLKRICETDLGLVSQCCLTK 732
VEK+ + +KL + L+ ILP+ N +YG K+ ++ G+V+QC
Sbjct: 535 RVEKMFEQ----IQSKLPGPPQF--LLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAP- 587
Query: 733 HVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS 792
+++ QY+ NV LKIN K+GG N++L S IPLVS PTII G DV+H PG+
Sbjct: 588 --TRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSD 645
Query: 793 SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQD------------------ 834
PSIAAVV+S+ WP +++Y V Q+ + E+I LFK D
Sbjct: 646 VPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSS 705
Query: 835 ----PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 890
P IF DGVSE QF QVL ELD I +AC L+ ++ P T +V QK HHT+ F
Sbjct: 706 GKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFF 765
Query: 891 ANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 932
D N+ PGTVVD+KICHP DFY+C+HAG+
Sbjct: 766 QAGSPD--------NVPPGTVVDNKICHPRNNDFYMCAHAGM 799
|
Length = 900 |
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut | Back alignment and domain information |
|---|
| >gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein | Back alignment and domain information |
|---|
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38 | Back alignment and domain information |
|---|
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) | Back alignment and domain information |
|---|
| >gnl|CDD|216868 pfam02084, Bindin, Bindin | Back alignment and domain information |
|---|
| >gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family | Back alignment and domain information |
|---|
| >gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|197548 smart00157, PRP, Major prion protein | Back alignment and domain information |
|---|
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B | Back alignment and domain information |
|---|
| >gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 | Back alignment and domain information |
|---|
| >gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 942 | |||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041 | 876 | consensus Translation initiation factor 2C (eIF-2C | 100.0 | |
| KOG1042 | 845 | consensus Germ-line stem cell division protein Hiw | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.89 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.85 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.84 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.78 | |
| PF12764 | 104 | Gly-rich_Ago1: Glycine-rich region of argonaut; In | 99.62 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.52 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.42 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.15 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 98.75 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 97.7 | |
| PF12764 | 104 | Gly-rich_Ago1: Glycine-rich region of argonaut; In | 96.63 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.99 | |
| COG4371 | 334 | Predicted membrane protein [Function unknown] | 86.33 | |
| KOG4307 | 944 | consensus RNA binding protein RBM12/SWAN [General | 83.9 | |
| KOG3915 | 641 | consensus Transcription regulator dachshund, conta | 80.85 |
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-140 Score=1293.65 Aligned_cols=720 Identities=37% Similarity=0.623 Sum_probs=614.8
Q ss_pred CCCCcCCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeEEEecC----CCCchhhHHHHHHHHHHHHHhhccCCccc
Q 002287 195 SSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITP----EVTSRGVNRAVMEQLVKLYRESHLGKRLP 268 (942)
Q Consensus 195 ~~k~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~--~~~iy~YdV~i~p----e~~~k~~~r~i~~~l~~~~~~~~~g~~~~ 268 (942)
..+...+|+||++||.|++|+|.||||+|+++ +..||||||+|.| ++++++++++|+.++++++... +.+..+
T Consensus 27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 105 (900)
T PLN03202 27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF 105 (900)
T ss_pred cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence 33444778999999999999999999999975 6789999999996 4556778899999998776543 444467
Q ss_pred eEeccceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeechhhHHHH
Q 002287 269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGLF 327 (942)
Q Consensus 269 ~yDG~~~Lys~~~L~~~~~~f~v~l~~~~~~------------~~---------~~~~~~~~~V~Ik~~~~~~l~~l~~~ 327 (942)
+|||+++|||..+|+++..+|.|++.++++. .. ...+.+.|+|+|++++++++.+|.+|
T Consensus 106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~ 185 (900)
T PLN03202 106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA 185 (900)
T ss_pred eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence 9999999999999998766788877542111 00 01246889999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHhcCCCCc-ccccCccccCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeee
Q 002287 328 LQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFI 406 (942)
Q Consensus 328 l~g~~~~~~~~~lq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~ 406 (942)
|.+...+.+.++||+||||||+.++.. ++.+||+||+++.....+++.|+|+|+||++|||+++++|+||||+++++||
T Consensus 186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~ 265 (900)
T PLN03202 186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV 265 (900)
T ss_pred HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence 999888888999999999999987654 8999999998754445678999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeecCC--------C
Q 002287 407 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------G 478 (942)
Q Consensus 407 ~~~~lld~~~~~~~~~~~~~~l~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~~~--------G 478 (942)
+++||+|+|.++.+... ....++.++.++|+|++|.++|+ +++|+|++|++.++++.+|++++. +
T Consensus 266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~ 338 (900)
T PLN03202 266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET 338 (900)
T ss_pred cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence 99999999998765322 11234567999999999999998 589999999999999999986421 3
Q ss_pred cEeeHHHHHHHHcCCcccCC-CCceEEecCCCCCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHH
Q 002287 479 TLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT 557 (942)
Q Consensus 479 ~~iSV~~Yf~~~Y~i~L~~p-~lP~l~~g~~~k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~ 557 (942)
++|||+|||+++|||+|+|| +||||.+++.++++|||||||.|+++|+++++|++.|+++||++|+.+|++|.+.|.++
T Consensus 339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~ 418 (900)
T PLN03202 339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA 418 (900)
T ss_pred ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 58999999999999999996 99999999888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCChhhhccCeEecCcceEeeeEEeCCCceeeccCCCccccCCCCccccccCceeeeCceeceeEEEEeCCcch
Q 002287 558 VHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQ 637 (942)
Q Consensus 558 ~~~~~~~~~~~l~~fGi~I~~~~~~v~arvLp~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~ 637 (942)
++.++++.+++|++|||+|+++|++|+|||||||+|.|+++. .+.|++|+||+++++|++++.+++|+||+|+++
T Consensus 419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-- 493 (900)
T PLN03202 419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-- 493 (900)
T ss_pred HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc--
Confidence 998888889999999999999999999999999999998742 245789999999999999999999999988654
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCc--hhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCC-CCcchhhh
Q 002287 638 DSIARGFCFELAQMCYISGMAFNPEPVIPPISARP--EHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDL 714 (942)
Q Consensus 638 ~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~--~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~-~~~~Y~~I 714 (942)
..+++|++.|.+.|+.+||.+..++.+.....+. ...+..++.+++++.++++ ..++|||||||++ +.++|+.|
T Consensus 494 -~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~I 570 (900)
T PLN03202 494 -CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGPW 570 (900)
T ss_pred -hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHHH
Confidence 2578999999999999999998643321111100 1112334555544444332 4699999999974 67899999
Q ss_pred hhhhhhccCceeeeeeeccccccchHHHHHHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCC
Q 002287 715 KRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794 (942)
Q Consensus 715 K~~~e~~~gI~TQci~~~t~~K~~~q~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~p 794 (942)
|++||+++||+||||... +.++||+.|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....|
T Consensus 571 K~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~p 647 (900)
T PLN03202 571 KKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVP 647 (900)
T ss_pred HHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCC
Confidence 999999999999999654 34789999999999999999999886554455788888899999999999998865579
Q ss_pred cEEEEEEecCCCCccceeEEEEeccCchhHHHHHH----------------HHh-cCCC--Cc---EEEcCCCCchhHHH
Q 002287 795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLF----------------KTW-QDPG--TP---YIFPDGVSEGQFYQ 852 (942)
Q Consensus 795 SiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l~----------------~~~-~~~~--~P---IiYRDGVsEgQf~~ 852 (942)
||||||||+||+++++|++.+++|.+++|+|++|. ..| ++.+ .| ||||||||||||.+
T Consensus 648 Siaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~ 727 (900)
T PLN03202 648 SIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQ 727 (900)
T ss_pred ceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHH
Confidence 99999999998889999999999999999988642 123 2222 25 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCc
Q 002287 853 VLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 932 (942)
Q Consensus 853 Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~ 932 (942)
|+++|+++|++||+++.++|+|+||||||+||||||||+.+ +.+||+||||||++||||.+||||||||+++
T Consensus 728 Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~ 799 (900)
T PLN03202 728 VLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAHAGM 799 (900)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEeccccc
Confidence 99999999999999998899999999999999999999863 3689999999999999999999999999999
Q ss_pred cccccc-ccc
Q 002287 933 QVSYFL-RFC 941 (942)
Q Consensus 933 qGTsrp-~y~ 941 (942)
|||||| .|+
T Consensus 800 qGTarPthY~ 809 (900)
T PLN03202 800 IGTTRPTHYH 809 (900)
T ss_pred ccCCcCceEE
Confidence 999995 886
|
|
| >KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins | Back alignment and domain information |
|---|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4371 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 942 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 1e-150 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 1e-150 | ||
| 3vna_A | 154 | Structural Insights Into Small Rna Sorting And Mrna | 3e-77 | ||
| 4g0p_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 2e-76 | ||
| 3vnb_A | 155 | Structural Insights Into Small Rna Sorting And Mrna | 4e-74 | ||
| 4g0x_A | 147 | Crystal Structure Of Arabidopsis Thaliana Ago1 Mid | 2e-72 | ||
| 4g0o_A | 139 | Crystal Structure Of Arabidopsis Thaliana Ago5 Mid | 4e-37 | ||
| 1r4k_A | 169 | Solution Structure Of The Drosophila Argonaute 1 Pa | 1e-28 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 4e-27 | ||
| 1si2_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 1e-26 | ||
| 1si3_A | 149 | Crystal Structure Of The Paz Domain Of Human Eif2c1 | 4e-25 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 6e-24 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 2e-19 | ||
| 4g0m_A | 150 | Crystal Structure Of Arabidopsis Thaliana Ago2 Mid | 6e-12 | ||
| 3luc_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 4e-09 | ||
| 3luk_A | 138 | Crystal Structure Of Mid Domain From Hago2 Length = | 5e-08 | ||
| 1r6z_P | 509 | The Crystal Structure Of The Argonaute2 Paz Domain | 5e-07 | ||
| 1vyn_A | 143 | Structure And Nucleic Acid Binding Of The Drosophil | 6e-07 | ||
| 1t2r_A | 123 | Structural Basis For 3' End Recognition Of Nucleic | 9e-06 | ||
| 3mj0_A | 124 | Crystal Structure Of Drosophia Ago-Paz Domain In Co | 1e-05 | ||
| 2xdy_A | 145 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do | 9e-05 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 | Back alignment and structure |
| >pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 | Back alignment and structure |
| >pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 | Back alignment and structure |
| >pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 | Back alignment and structure |
| >pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 | Back alignment and structure |
| >pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 | Back alignment and structure |
| >pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 | Back alignment and structure |
| >pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 | Back alignment and structure |
| >pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 | Back alignment and structure |
| >pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 | Back alignment and structure |
| >pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 | Back alignment and structure |
| >pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 | Back alignment and structure |
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 942 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.96 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.95 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.95 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.94 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.94 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.91 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.91 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 99.91 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.84 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.82 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 98.7 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-150 Score=1381.55 Aligned_cols=730 Identities=41% Similarity=0.715 Sum_probs=627.1
Q ss_pred CCCCCCCcCCCCCCCCCCCCCcceEEeeeEEeecCCCceeeeEEEecCCCCchhhHHHHHHHHHHHHHhhccCCccceEe
Q 002287 192 APPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYD 271 (942)
Q Consensus 192 ~p~~~k~~~~p~RP~~Gt~G~~v~l~tN~f~v~~~~~~iy~YdV~i~pe~~~k~~~r~i~~~l~~~~~~~~~g~~~~~yD 271 (942)
+|.+++.+.+|+||++||.|++|.|.||||+|+++++.||||||+|.|+.+++++++++++++++.++...+++..++||
T Consensus 18 ~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 18 PPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 46667788999999999999999999999999999889999999999999999999999999988775555777777999
Q ss_pred ccceEEecCCCCCCcceEEEEEecCCCCCCCCCCCcEEEEEEEEeeeechhhHHHHhcCCCCCChHHHHHHHHHHHhcCC
Q 002287 272 GRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELP 351 (942)
Q Consensus 272 G~~~Lys~~~L~~~~~~f~v~l~~~~~~~~~~~~~~~~~V~Ik~~~~~~l~~l~~~l~g~~~~~~~~~lq~Lniilr~~~ 351 (942)
|+++|||+.+||+++..+++.+.... ..+++.|+|+|++++++++++|.+|+.+...+.+.++||+||||||+.+
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~~-----~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~ 172 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLPG-----EGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLP 172 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHH
T ss_pred CcceEEECCcCCCCCcceEEEEecCC-----CCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhc
Confidence 99999999999986544444432111 1356789999999999999999999999988888999999999999998
Q ss_pred CCcccccCccccCCCCCCcccCCCCeEEeeeeeeeeeeccceeEEEEecceeeeeccccHHHHHHHHhcCCCC---CCCC
Q 002287 352 TTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVS---SRPL 428 (942)
Q Consensus 352 ~~~~~~~Gr~ff~~~~~~~~~l~~gle~w~G~~~Sir~~~~~l~LniD~s~~~F~~~~~lld~~~~~~~~~~~---~~~l 428 (942)
+++|..+||+||++..+...++++|+|+|+||++|||+++++|+||||+++++|++++||+|+|.++++.++. .+.+
T Consensus 173 ~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~ 252 (861)
T 4f3t_A 173 SMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPL 252 (861)
T ss_dssp HHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCC
T ss_pred cccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhcccc
Confidence 8999999999998864445678899999999999999999999999999999999999999999999875432 3457
Q ss_pred ChHHHHHHHHHccceEEEEeecCCccceEEEecccCCCCcceeeeec-CCC--cEeeHHHHHHHHcCCcccCCCCceEEe
Q 002287 429 SDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESG--TLKSVVEYFYETYGFVIQHTQWPCLQV 505 (942)
Q Consensus 429 ~~~~~~~i~~~LkGl~V~~~y~~~~~r~y~I~~i~~~~a~~~tF~~~-~~G--~~iSV~~Yf~~~Y~i~L~~p~lP~l~~ 505 (942)
++.++.+++++|+|++|.++|.+..+|+|+|.+|++.++++.+|.++ ++| ++|||+|||+++|||+|+||+||||++
T Consensus 253 ~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~ 332 (861)
T 4f3t_A 253 TDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQV 332 (861)
T ss_dssp CHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEE
T ss_pred CHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEe
Confidence 78899999999999999999976557999999999988889999753 344 379999999999999999999999999
Q ss_pred cCCCCCccccccceeecCCcccccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHhccCCCChhhhccCeEecCcceEeee
Q 002287 506 GNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEA 585 (942)
Q Consensus 506 g~~~k~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~t~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~I~~~~~~v~a 585 (942)
+++++++|||||||.|++||++.++|+++|+++||++|+..|.+|.+.|.++++.+.++.+++|++|||+|+++|++|+|
T Consensus 333 g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~g 412 (861)
T 4f3t_A 333 GQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTG 412 (861)
T ss_dssp SCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEE
T ss_pred cCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEE
Confidence 98888999999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred EEeCCCceeeccCCCccccCCCCccccccCceeeeCceeceeEEEEeCC--cchhHHHHHHHHHHHHHHHhcCcccCCCC
Q 002287 586 RILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSR--HVQDSIARGFCFELAQMCYISGMAFNPEP 663 (942)
Q Consensus 586 rvLp~P~i~y~~~~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~--~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p 663 (942)
||||||+|.|+++.+ ..+.|.+|+|||++++|++++++++|+|++|.. .+.++.++.|++.|.+.|+.+||.+..+|
T Consensus 413 RvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p 491 (861)
T 4f3t_A 413 RVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQP 491 (861)
T ss_dssp EECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCC
T ss_pred EEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCC
Confidence 999999999986432 234678999999999999999999999999853 34577899999999999999999998666
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEEEecCCCCcchhhhhhhhhhccCceeeeeeeccccccchHHHH
Q 002287 664 VIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMA 743 (942)
Q Consensus 664 ~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ilp~~~~~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q~~~ 743 (942)
.+.......++++..++.+.+. ..++||||||||++ .++|+.||++||+++||+||||+.+++.|.++||+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~l~~~-------~~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ 563 (861)
T 4f3t_A 492 CFCKYAQGADSVEPMFRHLKNT-------YAGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS 563 (861)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH-------STTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred eEEEecCchHHHHHHHHHHHhh-------cCCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence 5432222344555555544321 24689999999965 578999999999999999999999999988999999
Q ss_pred HHHHHHhhhcCccccccccccccCCCccCCCCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchh
Q 002287 744 NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQE 823 (942)
Q Consensus 744 NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~E 823 (942)
|||||||+||||+||.+.+. ..|.+...+|||||+||+||+++....|||||||||+| .++++|.+.+++|.+++|
T Consensus 564 ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E 639 (861)
T 4f3t_A 564 NLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQE 639 (861)
T ss_dssp HHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCC
T ss_pred HHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCcc
Confidence 99999999999999988653 23445568999999999999988667899999999999 889999999999999999
Q ss_pred HHHHHHHH-------hcC-----CCCcEEEcCCCCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccc
Q 002287 824 LIQDLFKT-------WQD-----PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA 891 (942)
Q Consensus 824 iI~~l~~~-------~~~-----~~~PIiYRDGVsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~ 891 (942)
+|++|.++ |.+ |.++||||||||||||++|+++|+++|++||.+++++|+|+||||||+||||||||+
T Consensus 640 ~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~ 719 (861)
T 4f3t_A 640 IIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFC 719 (861)
T ss_dssp SCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeee
Confidence 98776443 322 333499999999999999999999999999999998999999999999999999999
Q ss_pred cCCCCCCccCCCCCCcCceeecccccCCCcccEEEeecCCccccccc-ccc
Q 002287 892 NNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 892 ~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~qGTsrp-~y~ 941 (942)
.+.++ ..++.+||+||||||++||||.+||||||||+++|||||| +|+
T Consensus 720 ~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~ 768 (861)
T 4f3t_A 720 TDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYH 768 (861)
T ss_dssp SSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEE
T ss_pred cCCcc--cccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEE
Confidence 87532 2357899999999999999999999999999999999995 886
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 942 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 1e-63 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 2e-49 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 3e-46 | |
| d1t2sa_ | 123 | b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila | 8e-46 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 2e-42 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 1e-13 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 217 bits (555), Expect = 1e-63
Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 61/328 (18%)
Query: 624 VNHWICINFSRHVQDSI-ARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTR 682
V I+ S + + F EL G+ + ++ E ++ L
Sbjct: 37 VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96
Query: 683 YHDAMTKLGQGKELDLLIVILPDNNGS-------LYGDLKRICETDLGLVSQCCLTKHVF 735
+ K++DL+IV L + LY +KR + SQ L + +
Sbjct: 97 INKI-------KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLK 148
Query: 736 KMSKQYMA-NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794
+ +++ NVA ++ K G L + + + G D++ +
Sbjct: 149 NENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVN 200
Query: 795 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK---------TWQDPGTPYIFPDGV 845
++A E+ +Y L A ++L + ++ + DG
Sbjct: 201 AVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGR 259
Query: 846 SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGN 905
E+ A +K Y + + + KR++ R F+N
Sbjct: 260 LYRD-------EVAAFKKYG----ELYGYSLELLEIIKRNNPRFFSN-----------EK 297
Query: 906 ILPGTVVDSKICHPTEFDFYLCSHAGIQ 933
+ G + + +
Sbjct: 298 FIKGYFYK----LSEDSVILATYNQVYE 321
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 942 | |||
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.93 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.92 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=6.1e-43 Score=393.01 Aligned_cols=276 Identities=16% Similarity=0.117 Sum_probs=205.3
Q ss_pred eeceeEEEEeCC-cchhHHHHHHHHHHHHHHHhcCcccCCCCccCCCCCCchhHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 002287 623 TVNHWICINFSR-HVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIV 701 (942)
Q Consensus 623 ~l~~W~vv~~~~-~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~i~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~qlvl~ 701 (942)
.+.+|.+|.+.. +..+..+++|+++|.+.|+..||++..+|.........++.+..|.+.+++ .+++++++|
T Consensus 36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~v 108 (392)
T d1yvua2 36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINK-------IKDVDLVIV 108 (392)
T ss_dssp SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTT-------TSSCSEEEE
T ss_pred ccccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhh-------ccCCCEEEE
Confidence 455677765421 113456799999999999999999975554443334445555666655532 257899999
Q ss_pred EecCCCC-------cchhhhhhhhhhccCceeeeeeeccccccchH-HHHHHHHHHhhhcCccccccccccccCCCccCC
Q 002287 702 ILPDNNG-------SLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ-YMANVALKINVKVGGRNTVLVDAISRRIPLVSD 773 (942)
Q Consensus 702 ilp~~~~-------~~Y~~IK~~~e~~~gI~TQci~~~t~~K~~~q-~~~NI~lKiN~KLGG~n~~l~~~~~~~iP~~~~ 773 (942)
|++++.. ++|..||++| ++.||+||||+.+|+.+.+.+ ++.||+||||+||||+||.|.+. ..
T Consensus 109 i~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~--------~~ 179 (392)
T d1yvua2 109 FLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI--------EG 179 (392)
T ss_dssp EEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC--------TT
T ss_pred EEcCCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC--------CC
Confidence 9987654 6899999988 789999999999999866655 57899999999999999998542 23
Q ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEecCCCCccceeEEEEeccCchhHHHHHH----HHhcCC-----CCcEEEcCC
Q 002287 774 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLF----KTWQDP-----GTPYIFPDG 844 (942)
Q Consensus 774 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~~~EiI~~l~----~~~~~~-----~~PIiYRDG 844 (942)
.+|||||+||+|++++.. .++++|++++.|......|+.....|..++|++.++. +.|++. .++||||||
T Consensus 180 ~~tmiIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG 258 (392)
T d1yvua2 180 KVDAFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDG 258 (392)
T ss_dssp CCSEEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESS
T ss_pred CCeEEEEEEEEecCCCCC-cccEEEEEEEEcCCCCEEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCC
Confidence 689999999999987654 4455555555551333455556667888888877654 345443 234999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCccCCCCCCcCceeecccccCCCcccE
Q 002287 845 VSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDF 924 (942)
Q Consensus 845 VsEgQf~~Vl~~Ev~~Ik~a~~~l~~~y~Pkit~Ivv~Krh~tRff~~~~~~~~~~d~~~N~~pGTVVD~~It~p~~~DF 924 (942)
+.+ ++|+++|++||+++ .|+||||+|+||||+|||+.+ |+++||+|+ .+..++|
T Consensus 259 ~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~~-----------~~~~Gt~v~----~~~~~~~ 312 (392)
T d1yvua2 259 RLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE-----------KFIKGYFYK----LSEDSVI 312 (392)
T ss_dssp CCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC-----------SCCTTEEEE----BSSSEEE
T ss_pred CCc-------HHHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCCC-----------CCCCCCEEe----CCCCeEE
Confidence 854 56999999999875 689999999999999999742 566799985 5678899
Q ss_pred EEeecCCccccccc-ccc
Q 002287 925 YLCSHAGIQVSYFL-RFC 941 (942)
Q Consensus 925 yL~Sh~~~qGTsrp-~y~ 941 (942)
||+||.++|||++| +|+
T Consensus 313 ~~~s~~~~qGT~rP~~Y~ 330 (392)
T d1yvua2 313 LATYNQVYEGTHQPIKVR 330 (392)
T ss_dssp ECCSCCCSTTCCCCEEEE
T ss_pred EEEcCCcCCCCCCCcEEE
Confidence 99999999999996 775
|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|