Citrus Sinensis ID: 002298
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 940 | 2.2.26 [Sep-21-2011] | |||||||
| O81644 | 976 | Villin-2 OS=Arabidopsis t | yes | no | 0.988 | 0.951 | 0.723 | 0.0 | |
| O81645 | 965 | Villin-3 OS=Arabidopsis t | no | no | 0.980 | 0.955 | 0.736 | 0.0 | |
| O65570 | 974 | Villin-4 OS=Arabidopsis t | no | no | 0.972 | 0.938 | 0.471 | 0.0 | |
| O81643 | 909 | Villin-1 OS=Arabidopsis t | no | no | 0.778 | 0.805 | 0.408 | 1e-163 | |
| Q29261 | 827 | Villin-1 OS=Sus scrofa GN | yes | no | 0.690 | 0.784 | 0.348 | 1e-102 | |
| Q62468 | 827 | Villin-1 OS=Mus musculus | yes | no | 0.696 | 0.792 | 0.344 | 4e-99 | |
| O93510 | 778 | Gelsolin OS=Gallus gallus | yes | no | 0.688 | 0.831 | 0.347 | 9e-98 | |
| P20305 | 772 | Gelsolin (Fragment) OS=Su | no | no | 0.690 | 0.840 | 0.344 | 2e-97 | |
| P09327 | 827 | Villin-1 OS=Homo sapiens | yes | no | 0.689 | 0.783 | 0.333 | 3e-97 | |
| Q5ZIV9 | 717 | Adseverin OS=Gallus gallu | no | no | 0.691 | 0.906 | 0.334 | 7e-97 |
| >sp|O81644|VILI2_ARATH Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1386 bits (3587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/946 (72%), Positives = 792/946 (83%), Gaps = 17/946 (1%)
Query: 1 MGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQ 60
MGD YIVLQTT KGGAYL+DIHFWIGKDTSQDEAGTAA+KTVELDAVLGGRAVQHRE+Q
Sbjct: 42 MGDTYIVLQTTQNKGGAYLFDIHFWIGKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQ 101
Query: 61 GHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARSSLN 120
GHESDKFLSYFKPCIIPLEGGVASGF+ EEE FETRLY CKGKR +R+KQVPFARSSLN
Sbjct: 102 GHESDKFLSYFKPCIIPLEGGVASGFKTVEEEVFETRLYTCKGKRAIRLKQVPFARSSLN 161
Query: 121 HDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESD 180
HDDVFILDT++KIYQFNGANSNIQERAKALEV+Q+LK+KYH+G C+VAIVDDGKLDTESD
Sbjct: 162 HDDVFILDTEEKIYQFNGANSNIQERAKALEVVQYLKDKYHEGTCDVAIVDDGKLDTESD 221
Query: 181 SGEFWVLFGGFAPIGKKVATEDDVIAETTPPKLYSIEDSQVKIVEGELSKSMLENNKCYL 240
SG FWVLFGGFAPIG+KVA +DD++ E+TPPKLY I D +++ ++G+LSKSMLEN KCYL
Sbjct: 222 SGAFWVLFGGFAPIGRKVANDDDIVPESTPPKLYCITDGKMEPIDGDLSKSMLENTKCYL 281
Query: 241 LDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDS 300
LD G+E+++WVGRVTQV+ERKAASQ+AEEF++S+NRPK+ +TRVIQGYE+++FKSNFDS
Sbjct: 282 LDCGAEIYIWVGRVTQVDERKAASQSAEEFLASENRPKATHVTRVIQGYESHSFKSNFDS 341
Query: 301 WPSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSA 360
WPSGS PG EEGRGKVAALLKQQGVG+KG+ KS P NE++PPLLE GGK+EVW +NG
Sbjct: 342 WPSGSATPGNEEGRGKVAALLKQQGVGLKGIAKSAPVNEDIPPLLESGGKLEVWYVNGKV 401
Query: 361 KTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCN 420
KT LPKEDIGK YSGDCY+VLYTYHSG+RK++YFL CWFGK SI EDQ A RLANTM N
Sbjct: 402 KTPLPKEDIGKLYSGDCYLVLYTYHSGERKDEYFLSCWFGKKSIPEDQDTAIRLANTMSN 461
Query: 421 SLKGRPVQGRIFQGREPPQFVALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALI 480
SLKGRPVQGRI++G+EPPQFVALFQPMVV+KGGL SGYK S+ + TDETYT +SIAL+
Sbjct: 462 SLKGRPVQGRIYEGKEPPQFVALFQPMVVLKGGLSSGYKSSMGESESTDETYTPESIALV 521
Query: 481 RISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLK 540
++SGT +HNNK QV+ VATSLNS ECFLLQSG++MF WHGNQST EQ +LA KVAEFLK
Sbjct: 522 QVSGTGVHNNKAVQVETVATSLNSYECFLLQSGTSMFLWHGNQSTHEQLELATKVAEFLK 581
Query: 541 PGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNF 600
PG+ +KHAKEGTESS FWF LGGKQ++TSKK S E +RDPHLF+F+FN+GKF+VEE+YNF
Sbjct: 582 PGITLKHAKEGTESSTFWFALGGKQNFTSKKASSETIRDPHLFSFAFNRGKFQVEEIYNF 641
Query: 601 SQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYK 660
+QDDLLTEDI LDTHAEVFVWVGQ V+ KEKQ+ FE GQ YID+A SLEGL PKVP+YK
Sbjct: 642 AQDDLLTEDIYFLDTHAEVFVWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYK 701
Query: 661 VTEGNEPCFCTTFFSWDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRASAL 720
+ EGNEPCF TT+FSWD TKA VQGNSFQKK +LLFG H EDKS+ G QRA AL
Sbjct: 702 INEGNEPCFFTTYFSWDATKAIVQGNSFQKKASLLFGTHHVVEDKSNGGNQGLRQRAEAL 761
Query: 721 AALSSAFNPSSERSTSPSHDRSNGSNQGGPTQRASALAALSSAFKSSPGTKASAPKTS-- 778
AAL+SAFN SS R S DR N S+ GP QRA ALAALSSAF SS + S P
Sbjct: 762 AALNSAFNSSSNRPAYSSQDRLNESHD-GPRQRAEALAALSSAFNSSSSSTKSPPPPRPV 820
Query: 779 GSGQGSQRAAAVAALSQVLSAEKKRSPDTSPTR--TSGSPTAETSLSSEPKAEYAHSESE 836
G+ Q SQRAAAVAALSQVL AE K+SPDTSPTR TS +P + L+ A E E
Sbjct: 821 GTSQASQRAAAVAALSQVLVAENKKSPDTSPTRRSTSSNPADDIPLTE------AKDEEE 874
Query: 837 ASEQVG-DVKETEEVVPVSESNGDDSETKQVT-EQDENGSETSRSTFSYDQLKARSDNPV 894
ASE G + KE EEV P + D++E KQ T EQ ++ + S +TF+Y+QL+A+S+NPV
Sbjct: 875 ASEVAGLEAKEEEEVSPAA----DETEAKQETEEQGDSEIQPSGATFTYEQLRAKSENPV 930
Query: 895 TGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 940
TGIDFKRREAYLS+EEFQ+VFG+ KEAF LP+WKQD+ KKKFDLF
Sbjct: 931 TGIDFKRREAYLSEEEFQSVFGIEKEAFNNLPRWKQDLLKKKFDLF 976
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Ca(2+)-regulated actin-binding protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81645|VILI3_ARATH Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=2 | Back alignment and function description |
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| >sp|O65570|VILI4_ARATH Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1 | Back alignment and function description |
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| >sp|O81643|VILI1_ARATH Villin-1 OS=Arabidopsis thaliana GN=VLN1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q29261|VILI_PIG Villin-1 OS=Sus scrofa GN=VIL1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q62468|VILI_MOUSE Villin-1 OS=Mus musculus GN=Vil1 PE=1 SV=3 | Back alignment and function description |
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| >sp|O93510|GELS_CHICK Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1 | Back alignment and function description |
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| >sp|P20305|GELS_PIG Gelsolin (Fragment) OS=Sus scrofa GN=GSN PE=1 SV=1 | Back alignment and function description |
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| >sp|P09327|VILI_HUMAN Villin-1 OS=Homo sapiens GN=VIL1 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q5ZIV9|ADSV_CHICK Adseverin OS=Gallus gallus GN=SCIN PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 940 | ||||||
| 224138062 | 975 | predicted protein [Populus trichocarpa] | 0.981 | 0.946 | 0.812 | 0.0 | |
| 224090123 | 954 | predicted protein [Populus trichocarpa] | 0.967 | 0.952 | 0.817 | 0.0 | |
| 449437631 | 986 | PREDICTED: villin-2-like [Cucumis sativu | 1.0 | 0.953 | 0.775 | 0.0 | |
| 225441852 | 952 | PREDICTED: villin-2-like [Vitis vinifera | 0.959 | 0.947 | 0.785 | 0.0 | |
| 297739645 | 952 | unnamed protein product [Vitis vinifera] | 0.959 | 0.947 | 0.785 | 0.0 | |
| 356534770 | 973 | PREDICTED: villin-2-like isoform 1 [Glyc | 0.987 | 0.953 | 0.767 | 0.0 | |
| 356500511 | 964 | PREDICTED: villin-2-like [Glycine max] | 0.978 | 0.954 | 0.767 | 0.0 | |
| 356534772 | 964 | PREDICTED: villin-2-like isoform 2 [Glyc | 0.977 | 0.953 | 0.763 | 0.0 | |
| 356572028 | 984 | PREDICTED: villin-2-like [Glycine max] | 0.995 | 0.951 | 0.760 | 0.0 | |
| 356504781 | 984 | PREDICTED: villin-2-like [Glycine max] | 0.995 | 0.951 | 0.762 | 0.0 |
| >gi|224138062|ref|XP_002322720.1| predicted protein [Populus trichocarpa] gi|222867350|gb|EEF04481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1547 bits (4006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/949 (81%), Positives = 841/949 (88%), Gaps = 26/949 (2%)
Query: 1 MGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQ 60
MGD YIVLQTT GKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQ
Sbjct: 44 MGDSYIVLQTTTGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQ 103
Query: 61 GHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARSSLN 120
GHESDKFLSYFKPCIIPLEGGVA+GF+K EEE FE RLYVC+GKRVVR+KQVPFARSSLN
Sbjct: 104 GHESDKFLSYFKPCIIPLEGGVATGFKKVEEEAFEIRLYVCRGKRVVRLKQVPFARSSLN 163
Query: 121 HDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESD 180
HDDVFILDT+ KIYQFNGANSNIQER KALEVIQFLKEKYH+G C+VAIVDDGKLDTESD
Sbjct: 164 HDDVFILDTEKKIYQFNGANSNIQERGKALEVIQFLKEKYHEGTCDVAIVDDGKLDTESD 223
Query: 181 SGEFWVLFGGFAPIGKKVATEDDVIAETTPPKLYSIEDSQVKIVEGELSKSMLENNKCYL 240
SGEFWVLFGGFAPIGKKVA EDD+I ETTP KLYSI D +VKIVEGELSK +LENNKCYL
Sbjct: 224 SGEFWVLFGGFAPIGKKVANEDDIIPETTPAKLYSITDGEVKIVEGELSKGLLENNKCYL 283
Query: 241 LDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDS 300
LD G+E+FVWVGRVTQVEERKAASQAAEEF++SQNRPK+ ++TR+IQGYET +FK+NFDS
Sbjct: 284 LDCGAEIFVWVGRVTQVEERKAASQAAEEFVASQNRPKTTQLTRLIQGYETRSFKTNFDS 343
Query: 301 WPSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSA 360
WP+GS APGAEEGRGKVAALLKQQGVG+KGM KS P NEEVPPLLEGGGKMEVW INGS+
Sbjct: 344 WPAGSAAPGAEEGRGKVAALLKQQGVGLKGMTKSAPVNEEVPPLLEGGGKMEVWCINGSS 403
Query: 361 KTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDS-------IEEDQKMATR 413
KT LPKED+GKFYSGDCYI+LYTYHSGDRKEDY LCCWFG DS I+EDQKMA R
Sbjct: 404 KTPLPKEDVGKFYSGDCYIILYTYHSGDRKEDYLLCCWFGNDSSEIHGHPIQEDQKMAAR 463
Query: 414 LANTMCNSLKGRPVQGRIFQGREPPQFVALFQPMVVVKGGLCSGYKKSLADKGLTDETYT 473
LANTM NSLKGRPVQGRIFQG+EPPQFVALFQP+V++KGGL SGYKKS+A+KGL+DETYT
Sbjct: 464 LANTMSNSLKGRPVQGRIFQGKEPPQFVALFQPIVILKGGLSSGYKKSIAEKGLSDETYT 523
Query: 474 ADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAA 533
ADS+AL RISGTS+HN+K QVDAVATSLNS+ECFLLQSGS++FTWHGNQSTFEQQQLAA
Sbjct: 524 ADSVALFRISGTSVHNDKAVQVDAVATSLNSAECFLLQSGSSIFTWHGNQSTFEQQQLAA 583
Query: 534 KVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFE 593
K+AEFLKPGVA+KHAKEGTESSAFWF LGGKQSYTSKK SPE VRDPHLFTFSFNKGKF+
Sbjct: 584 KIAEFLKPGVALKHAKEGTESSAFWFALGGKQSYTSKKFSPETVRDPHLFTFSFNKGKFQ 643
Query: 594 VEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLS 653
VEEVYNFSQDDLLTEDILILDTHAEVFVWVGQ VD KEKQ+ F+ GQ YI+MA SL+GLS
Sbjct: 644 VEEVYNFSQDDLLTEDILILDTHAEVFVWVGQYVDPKEKQNVFDIGQKYIEMAVSLDGLS 703
Query: 654 PKVPLYKVTEGNEPCFCTTFFSWDPTKATVQGNSFQKKVALLFG-ASHAAEDKSHANQGG 712
P VPLYKVTEGNEP F TT+FSWD TKATVQGNSFQKK ALLFG H E++S+ NQGG
Sbjct: 704 PNVPLYKVTEGNEPSFFTTYFSWDLTKATVQGNSFQKKAALLFGLGHHVVEERSNGNQGG 763
Query: 713 PTQRASALAALSSAFNPSSERSTSPSHDRSNGSNQGGPTQRASALAALSSAFKSSPGTKA 772
PTQRASALAALSSAFNPSS +S+ DRSNGSNQGG TQRASALAALSSAF SSPG+K
Sbjct: 764 PTQRASALAALSSAFNPSSGKSS--LLDRSNGSNQGGTTQRASALAALSSAFNSSPGSKT 821
Query: 773 SAPKTSGSGQGSQRAAAVAALSQVLSAEKKRSPDTSPTRTSGSPTAETSLSSEPKAEYAH 832
+A + SG+GQGSQR AAVAALS VL+AEKK++P+TSP+R SP +ET+L
Sbjct: 822 TASRPSGTGQGSQRRAAVAALSSVLTAEKKQTPETSPSR---SPPSETNL---------- 868
Query: 833 SESEASEQVGDVKETEEVVPVSESN-GDDSETKQVTEQDENGSETSRSTFSYDQLKARSD 891
E SE V +VKE EE VSESN G+DSE KQ TE E+ +STF YDQLKA SD
Sbjct: 869 --PEGSEGVAEVKEMEETASVSESNGGEDSERKQDTEHGESDDGNGQSTFCYDQLKAHSD 926
Query: 892 NPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 940
NPV GIDFKRREAYLSDEEFQT+FG+ KEAFYK+PKWKQDMQKKKFDLF
Sbjct: 927 NPVKGIDFKRREAYLSDEEFQTIFGVTKEAFYKMPKWKQDMQKKKFDLF 975
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090123|ref|XP_002308941.1| predicted protein [Populus trichocarpa] gi|222854917|gb|EEE92464.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449437631|ref|XP_004136595.1| PREDICTED: villin-2-like [Cucumis sativus] gi|449520821|ref|XP_004167431.1| PREDICTED: villin-2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225441852|ref|XP_002284163.1| PREDICTED: villin-2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297739645|emb|CBI29827.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356534770|ref|XP_003535925.1| PREDICTED: villin-2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356500511|ref|XP_003519075.1| PREDICTED: villin-2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356534772|ref|XP_003535926.1| PREDICTED: villin-2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356572028|ref|XP_003554172.1| PREDICTED: villin-2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356504781|ref|XP_003521173.1| PREDICTED: villin-2-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 940 | ||||||
| TAIR|locus:2054401 | 976 | VLN2 "villin 2" [Arabidopsis t | 0.989 | 0.952 | 0.663 | 0.0 | |
| TAIR|locus:2082523 | 965 | VLN3 "villin 3" [Arabidopsis t | 0.917 | 0.893 | 0.672 | 0.0 | |
| TAIR|locus:2165570 | 962 | VLN5 "villin 5" [Arabidopsis t | 0.746 | 0.729 | 0.496 | 3.9e-214 | |
| RGD|1307048 | 827 | Vil1 "villin 1" [Rattus norveg | 0.697 | 0.793 | 0.336 | 2.5e-102 | |
| UNIPROTKB|F1SRY3 | 827 | VIL1 "Villin-1" [Sus scrofa (t | 0.7 | 0.795 | 0.338 | 1.1e-101 | |
| UNIPROTKB|Q29261 | 827 | VIL1 "Villin-1" [Sus scrofa (t | 0.7 | 0.795 | 0.338 | 1.4e-101 | |
| UNIPROTKB|P02640 | 826 | VIL1 "Villin-1" [Gallus gallus | 0.695 | 0.791 | 0.324 | 2.5e-100 | |
| MGI|MGI:98930 | 827 | Vil1 "villin 1" [Mus musculus | 0.697 | 0.793 | 0.329 | 3.2e-100 | |
| UNIPROTKB|E2RPX1 | 827 | VIL1 "Uncharacterized protein" | 0.7 | 0.795 | 0.331 | 3.2e-100 | |
| UNIPROTKB|F1ND31 | 828 | VIL1 "Villin-1" [Gallus gallus | 0.701 | 0.795 | 0.327 | 8.6e-100 |
| TAIR|locus:2054401 VLN2 "villin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3321 (1174.1 bits), Expect = 0., P = 0.
Identities = 627/945 (66%), Positives = 734/945 (77%)
Query: 1 MGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQ 60
MGD YIVLQTT KGGAYL+DIHFWIGKDTSQDEAGTAA+KTVELDAVLGGRAVQHRE+Q
Sbjct: 42 MGDTYIVLQTTQNKGGAYLFDIHFWIGKDTSQDEAGTAAVKTVELDAVLGGRAVQHREIQ 101
Query: 61 GHESDKFLSYFKPCIIPLEGGVASGFRKTXXXXXXTRLYVCKGKRVVRMKQVPFARSSLN 120
GHESDKFLSYFKPCIIPLEGGVASGF+ TRLY CKGKR +R+KQVPFARSSLN
Sbjct: 102 GHESDKFLSYFKPCIIPLEGGVASGFKTVEEEVFETRLYTCKGKRAIRLKQVPFARSSLN 161
Query: 121 HDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTESD 180
HDDVFILDT++KIYQFNGANSNIQERAKALEV+Q+LK+KYH+G C+VAIVDDGKLDTESD
Sbjct: 162 HDDVFILDTEEKIYQFNGANSNIQERAKALEVVQYLKDKYHEGTCDVAIVDDGKLDTESD 221
Query: 181 SGEFWVLFGGFAPIGKKVATEDDVIAETTPPKLYSIEDSQVKIVEGELSKSMLENNKCYL 240
SG FWVLFGGFAPIG+KVA +DD++ E+TPPKLY I D +++ ++G+LSKSMLEN KCYL
Sbjct: 222 SGAFWVLFGGFAPIGRKVANDDDIVPESTPPKLYCITDGKMEPIDGDLSKSMLENTKCYL 281
Query: 241 LDRGSEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDS 300
LD G+E+++WVGRVTQV+ERKAASQ+AEEF++S+NRPK+ +TRVIQGYE+++FKSNFDS
Sbjct: 282 LDCGAEIYIWVGRVTQVDERKAASQSAEEFLASENRPKATHVTRVIQGYESHSFKSNFDS 341
Query: 301 WPSGSTAPGAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSA 360
WPSGS PG EEGRGKVAALLKQQGVG+KG+ KS P NE++PPLLE GGK+EVW +NG
Sbjct: 342 WPSGSATPGNEEGRGKVAALLKQQGVGLKGIAKSAPVNEDIPPLLESGGKLEVWYVNGKV 401
Query: 361 KTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCN 420
KT LPKEDIGK YSGDCY+VLYTYHSG+RK++YFL CWFGK SI EDQ A RLANTM N
Sbjct: 402 KTPLPKEDIGKLYSGDCYLVLYTYHSGERKDEYFLSCWFGKKSIPEDQDTAIRLANTMSN 461
Query: 421 SLKGRPVQGRIFQGREPPQFVALFQPMVVVKGGLCSGYKKSLADKGLTDETYTADSIALI 480
SLKGRPVQGRI++G+EPPQFVALFQPMVV+KGGL SGYK S+ + TDETYT +SIAL+
Sbjct: 462 SLKGRPVQGRIYEGKEPPQFVALFQPMVVLKGGLSSGYKSSMGESESTDETYTPESIALV 521
Query: 481 RISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLK 540
++SGT +HNNK QV+ VATSLNS ECFLLQSG++MF WHGNQST EQ +LA KVAEFLK
Sbjct: 522 QVSGTGVHNNKAVQVETVATSLNSYECFLLQSGTSMFLWHGNQSTHEQLELATKVAEFLK 581
Query: 541 PGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPHLFTFSFNKGKFEVEEVYNF 600
PG+ +KHAKEGTESS FWF LGGKQ++TSKK S E +RDPHLF+F+FN+GKF+VEE+YNF
Sbjct: 582 PGITLKHAKEGTESSTFWFALGGKQNFTSKKASSETIRDPHLFSFAFNRGKFQVEEIYNF 641
Query: 601 SQXXXXXXXXXXXXXHAEVFVWVGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYK 660
+Q HAEVFVWVGQ V+ KEKQ+ FE GQ YID+A SLEGL PKVP+YK
Sbjct: 642 AQDDLLTEDIYFLDTHAEVFVWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYK 701
Query: 661 VTEGNEPCFCTTFFSWDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQGGPTQRXXXX 720
+ EGNEPCF TT+FSWD TKA VQGNSFQKK +LLFG H EDKS+ G QR
Sbjct: 702 INEGNEPCFFTTYFSWDATKAIVQGNSFQKKASLLFGTHHVVEDKSNGGNQGLRQRAEAL 761
Query: 721 XXXXXXFNPSSERSTSPSHDRSNGSNQGGPTQRXXXXXXXXXXX-XXXPGTKASAP-KTX 778
FN SS R S DR N S+ G P QR TK+ P +
Sbjct: 762 AALNSAFNSSSNRPAYSSQDRLNESHDG-PRQRAEALAALSSAFNSSSSSTKSPPPPRPV 820
Query: 779 XXXXXXXXXXXXXXXXXXXXXEKKRSPDTSPTR--TSGSPTAETSLSSEPKXXXXXXXXX 836
E K+SPDTSPTR TS +P + L+ E K
Sbjct: 821 GTSQASQRAAAVAALSQVLVAENKKSPDTSPTRRSTSSNPADDIPLT-EAKDEEEASEVA 879
Query: 837 XXXQVGDVKETEEVVPVSESNGDDSETKQVTE-QDENGSETSRSTFSYDQLKARSDNPVT 895
+ KE EEV P + D++E KQ TE Q ++ + S +TF+Y+QL+A+S+NPVT
Sbjct: 880 GL----EAKEEEEVSPAA----DETEAKQETEEQGDSEIQPSGATFTYEQLRAKSENPVT 931
Query: 896 GIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 940
GIDFKRREAYLS+EEFQ+VFG+ KEAF LP+WKQD+ KKKFDLF
Sbjct: 932 GIDFKRREAYLSEEEFQSVFGIEKEAFNNLPRWKQDLLKKKFDLF 976
|
|
| TAIR|locus:2082523 VLN3 "villin 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165570 VLN5 "villin 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1307048 Vil1 "villin 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SRY3 VIL1 "Villin-1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29261 VIL1 "Villin-1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P02640 VIL1 "Villin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:98930 Vil1 "villin 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RPX1 VIL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1ND31 VIL1 "Villin-1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81644 | VILI2_ARATH | No assigned EC number | 0.7230 | 0.9882 | 0.9518 | yes | no |
| O81645 | VILI3_ARATH | No assigned EC number | 0.7361 | 0.9808 | 0.9554 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00160495 | SubName- Full=Putative uncharacterized protein; (975 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 940 | |||
| cd11290 | 113 | cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l | 5e-44 | |
| cd11293 | 101 | cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-l | 1e-41 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 4e-38 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 2e-32 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 2e-28 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 4e-28 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 1e-24 | |
| cd11290 | 113 | cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l | 1e-20 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 4e-17 | |
| cd11293 | 101 | cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-l | 1e-16 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 1e-15 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 2e-15 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 7e-15 | |
| smart00262 | 90 | smart00262, GEL, Gelsolin homology domain | 8e-15 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 9e-14 | |
| smart00153 | 36 | smart00153, VHP, Villin headpiece domain | 4e-13 | |
| pfam02209 | 36 | pfam02209, VHP, Villin headpiece domain | 4e-13 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 8e-13 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 2e-11 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 8e-11 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-10 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 1e-09 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 2e-09 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 3e-09 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 3e-09 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 2e-07 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 5e-07 | |
| cd11291 | 99 | cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l | 1e-06 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 1e-06 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 4e-06 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 4e-06 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 1e-05 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 6e-05 | |
| PRK13108 | 460 | PRK13108, PRK13108, prolipoprotein diacylglyceryl | 6e-05 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 1e-04 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 2e-04 | |
| cd11289 | 92 | cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l | 5e-04 | |
| cd11292 | 98 | cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l | 7e-04 | |
| cd11288 | 92 | cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l | 0.001 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.001 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.004 |
| >gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 5e-44
Identities = 55/80 (68%), Positives = 64/80 (80%)
Query: 2 GDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQG 61
GD YIVL+TT G+ YDIH+W+GK+ SQDEAG AAIK VELD LGGR VQHRE+QG
Sbjct: 34 GDSYIVLKTTLDPSGSLSYDIHYWLGKEASQDEAGAAAIKAVELDDYLGGRPVQHREVQG 93
Query: 62 HESDKFLSYFKPCIIPLEGG 81
HES++FLSYFK II +EGG
Sbjct: 94 HESEEFLSYFKKGIIYIEGG 113
|
Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin_like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 113 |
| >gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|128458 smart00153, VHP, Villin headpiece domain | Back alignment and domain information |
|---|
| >gnl|CDD|202157 pfam02209, VHP, Villin headpiece domain | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 940 | |||
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0445 | 919 | consensus Actin regulatory protein supervillin (ge | 100.0 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0445 | 919 | consensus Actin regulatory protein supervillin (ge | 100.0 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 99.68 | |
| PF02209 | 36 | VHP: Villin headpiece domain; InterPro: IPR003128 | 99.68 | |
| smart00153 | 36 | VHP Villin headpiece domain. | 99.67 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 99.67 | |
| KOG1044 | 670 | consensus Actin-binding LIM Zn-finger protein Lima | 99.48 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 99.36 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 99.34 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 96.37 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.9 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 95.58 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 92.88 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 92.79 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 92.51 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 92.45 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 81.52 |
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-209 Score=1777.19 Aligned_cols=774 Identities=51% Similarity=0.886 Sum_probs=711.8
Q ss_pred CCcEEEEeeeccCCCCCccEEEEEEccCCCChhhHhHHHHHHHHHHHHhCCCceEEEEeccCCcHHHHhccCCCEEEecC
Q 002298 1 MGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEG 80 (940)
Q Consensus 1 sGD~YIVL~t~~~~~~~~~~~Ih~WlG~~ss~de~g~AA~~aveLd~~Lgg~~vq~RevQG~Es~~Fls~Fk~~ii~~~G 80 (940)
+|||||||+|+.++++.+.|+||||||+++|+||+|+||++|||||+.|||++|||||||||||+.||+|||+||||++|
T Consensus 44 ~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~G 123 (827)
T KOG0443|consen 44 TGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGAAAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEG 123 (827)
T ss_pred cCceEEEEehhhccCCccceeEEEEecCccchhhhcceeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccccceEEEEEecceeEEEEEeccCccccCCCCeEEEecCCeEEEEcCCCCCHHHHHHHHHHHHHhhhcc
Q 002298 81 GVASGFRKTEEEEFETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKY 160 (940)
Q Consensus 81 g~~sgf~~~e~~~~~~rL~~vkGk~~v~~~EV~~s~sSLNsgDvFILd~~~~IyvW~G~~Sn~~Er~kA~~ia~~Ik~~~ 160 (940)
|++|||+||+.+.+.+|||||||+|+||++|||++|+|||++||||||++++||||+|++||++||+||+++|+.|+|++
T Consensus 124 Gv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e 203 (827)
T KOG0443|consen 124 GVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNE 203 (827)
T ss_pred ccccCcccccccceeeEEEEEccceeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccC
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCCCCCChhhHHHHhCCCCC-CCCCCCCccccccccCCCeEEEEeC--CeeEEEEc--c-ccccccC
Q 002298 161 HDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAP-IGKKVATEDDVIAETTPPKLYSIED--SQVKIVEG--E-LSKSMLE 234 (940)
Q Consensus 161 ~~G~~~i~iVdeG~~~~~~e~~eFw~~LGg~~~-~~~~~~~~~~~~~~~~~~rLy~v~~--G~l~~~e~--~-l~q~~L~ 234 (940)
|.|+|+|.+||+|+++.+++.++||..+||.++ ++.....+++.......++||+|++ |.+.+..+ . |+|+||+
T Consensus 204 ~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd 283 (827)
T KOG0443|consen 204 RDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLD 283 (827)
T ss_pred CCCceeEEEecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhc
Confidence 999999999999999999999999999999988 6665555555555678899999994 76655443 2 9999999
Q ss_pred CCceEEecCC-ceEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCCCChhhHhcccCCCCCCCCCCCccc
Q 002298 235 NNKCYLLDRG-SEVFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAPGAEEG 313 (940)
Q Consensus 235 s~~vyILD~g-~eIyVWiGk~as~~eRk~A~~~A~~yl~~~~Rp~~t~I~~V~eG~Ep~~FK~~F~~W~~~~~~~~~~~~ 313 (940)
+++||||||| .+||||+||.|+.+||++||..|++||++++||.+|+|++|.||+|++.||++|.+|++...+.+.+.+
T Consensus 284 ~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeFlk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~ 363 (827)
T KOG0443|consen 284 TEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEFLKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEG 363 (827)
T ss_pred cCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhccCCCCceEEEecCCCcchhHHHHHhhCcccccccccccc
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999888788899
Q ss_pred hhhHHHHhhhccccccccCCCCCCCCCCCCcccCCccEEEEEEeCCceeeCCCCccceeeeCcEEEEEEeeecCCCCcce
Q 002298 314 RGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDY 393 (940)
Q Consensus 314 rgkva~~~~~~~~dv~~l~~~~p~~~e~~~~~d~sg~l~VWrIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~~~~~ 393 (940)
||++|++++++++||..|++..+++++.+|+|||+|+++||||++.++++||..++|+||+||||||+|+|..++++.+|
T Consensus 364 rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~ 443 (827)
T KOG0443|consen 364 RGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGKLQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEH 443 (827)
T ss_pred ccccceeeeecccchhhcccCccccccccceecCCCcEEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccce
Confidence 99999999888999999988878899999999999999999999999999999999999999999999999535568999
Q ss_pred EEEEEcCCCCChHhHHHHHHHHHHHHhhcCCCCeEEEeecCCCCHHHHhhcCC-eEEEeCccccCCccccccCCCCCccc
Q 002298 394 FLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCSGYKKSLADKGLTDETY 472 (940)
Q Consensus 394 ~iy~W~G~~ss~de~~~aa~la~~l~~~l~g~~vq~Rv~QGkEp~~Fl~iF~~-~ii~~GG~ss~~~~~~~e~~~~~~~~ 472 (940)
+||.|+|++|+++|+++|+.+|++|++.++|.|+|+||+|||||+|||+||++ |||++||++. .+++|
T Consensus 444 iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~ 512 (827)
T KOG0443|consen 444 IIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTY 512 (827)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCChHHHHhhCCceEEEecCcCC-----------CCCcc
Confidence 99999999999999999999999999999999999999999999999999998 9999999973 23567
Q ss_pred cCCceeEEEEEecCCCCceEEEeccCcCCCCCCCcEEeeeCCeEEEEECCCCCHHHHHHHHHHHHHhCCCceEEecccCC
Q 002298 473 TADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIKHAKEGT 552 (940)
Q Consensus 473 ~~~~~~Lf~V~G~~~~~~~aveV~~~asSLnS~d~FIL~~~~~vyvW~G~~ss~~er~~A~~va~~l~~~~~~~~v~EG~ 552 (940)
+..+++||||+|++++|++||||++.++||||+|||||++++++|+|||++||++||+||+.++..|+ ..+...+.||+
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-~~~~~~v~EG~ 591 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-RCQSTAVKEGS 591 (827)
T ss_pred CCCceEEEEEeccCcccceeEeeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-cCChhhhhcCC
Confidence 78889999999999999999999999999999999999999999999999999999999999999997 35677899999
Q ss_pred cccccccccCCcccCCCCCC-CCCCCCCCeeEEEEecCCeeeEEeecccCccCCCCCCEEEEeCCCEEEEEEcCCCCHHH
Q 002298 553 ESSAFWFPLGGKQSYTSKKV-SPEIVRDPHLFTFSFNKGKFEVEEVYNFSQDDLLTEDILILDTHAEVFVWVGQSVDSKE 631 (940)
Q Consensus 553 E~~~FW~~LGGk~~y~~~~~-~~~~~~~prLF~~S~~~G~~~v~EI~~F~QdDL~~ddv~ILD~~~eIfVWiG~~a~~~e 631 (940)
||++||++|||+.+|+++++ .....++||||.||+.+|.|+++||++|+||||++|||||||||++||||||++++++|
T Consensus 592 Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~e 671 (827)
T KOG0443|consen 592 EPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKE 671 (827)
T ss_pred CchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhH
Confidence 99999999999999999985 34456999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCcEEEecCCCCCcccccccc-cCCCCccccCccHHHHHHHHhcCCCccccccccCC
Q 002298 632 KQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFS-WDPTKATVQGNSFQKKVALLFGASHAAEDKSHANQ 710 (940)
Q Consensus 632 k~~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~qG~EP~~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 710 (940)
|..|+.+|++||+++ +.+||++.|||++|+||+||++||+||. ||+.| +||++++++|++..
T Consensus 672 K~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp~Ftg~F~~WD~~k-----wS~~~~~~~l~~~~----------- 734 (827)
T KOG0443|consen 672 KEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPPFFTGFFLSWDPSK-----WSFQKKLKDLKNKV----------- 734 (827)
T ss_pred HHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCChhhccccccCCcc-----cccchHHHHHhccc-----------
Confidence 999999999999999 5569999999999999999999999999 99998 47899999998661
Q ss_pred CCCccchhhHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHhhhcccCCCCCCCCCCCCCCCCCCchHHHHH
Q 002298 711 GGPTQRASALAALSSAFNPSSERSTSPSHDRSNGSNQGGPTQRASALAALSSAFKSSPGTKASAPKTSGSGQGSQRAAAV 790 (940)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (940)
.+++.+++++++.+++.-.+ - +
T Consensus 735 ----------------------------------------~~~~~~~~~~~a~~~sk~~~----~---~----------- 756 (827)
T KOG0443|consen 735 ----------------------------------------TYNARAISEISADVRSKLYP----D---S----------- 756 (827)
T ss_pred ----------------------------------------ccchhhccchhhhhhccccc----c---c-----------
Confidence 23444555555655552100 0 0
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCCCCCcccCCCCccccccccccccccccCCcccccccccccCCCCCCCccccccccc
Q 002298 791 AALSQVLSAEKKRSPDTSPTRTSGSPTAETSLSSEPKAEYAHSESEASEQVGDVKETEEVVPVSESNGDDSETKQVTEQD 870 (940)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (940)
.. +..
T Consensus 757 ----------------~~-----------------------------------------------------------~~~ 761 (827)
T KOG0443|consen 757 ----------------LN-----------------------------------------------------------PDS 761 (827)
T ss_pred ----------------CC-----------------------------------------------------------CCc
Confidence 00 000
Q ss_pred cCCCCCCCcccChHHHhhccCCCCCCCCccccccCCCHHHHHHHhCCCHHHHhcCchhhHhhhhhhcCCC
Q 002298 871 ENGSETSRSTFSYDQLKARSDNPVTGIDFKRREAYLSDEEFQTVFGMMKEAFYKLPKWKQDMQKKKFDLF 940 (940)
Q Consensus 871 ~~~~~~~~~~~~~~~l~~~~~~~p~~vd~~~~E~yLs~~~F~~~f~m~~~~f~~lp~Wkq~~~Kk~~~Lf 940 (940)
+....+|||++|+.++.++.++|||+|||.|||++||+.+|||+++|||+||+|||++|||+++||
T Consensus 762 ----~~p~~~~~~e~l~~~~~~~~~~id~~rrE~yLs~~dF~~~Fgmtk~eF~~LPkWKq~~lKk~~~LF 827 (827)
T KOG0443|consen 762 ----EAPRPAFPYEQLLTQSEDPVPDIDPTRREAYLSEEEFVSVFGMTKEEFYALPKWKQNKLKKQFGLF 827 (827)
T ss_pred ----cCcccCCCHHHHhccccCcCCCCChhHhhhhccHHHHHHHhCcCHHHHhhcchhHHHHHhhhhccC
Confidence 011147999999976666655699999999999999999999999999999999999999999999
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia | Back alignment and domain information |
|---|
| >smart00153 VHP Villin headpiece domain | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 940 | ||||
| 1d0n_A | 729 | The Crystal Structure Of Calcium-Free Equine Plasma | 4e-90 | ||
| 1d0n_A | 729 | The Crystal Structure Of Calcium-Free Equine Plasma | 5e-16 | ||
| 2fgh_A | 731 | Atp Bound Gelsolin Length = 731 | 4e-90 | ||
| 2fgh_A | 731 | Atp Bound Gelsolin Length = 731 | 5e-16 | ||
| 3ffn_A | 782 | Crystal Structure Of Calcium-Free Human Gelsolin Le | 4e-89 | ||
| 3ffn_A | 782 | Crystal Structure Of Calcium-Free Human Gelsolin Le | 1e-17 | ||
| 3ffk_A | 377 | Crystal Structure Of Human Gelsolin Domains G1-G3 B | 1e-51 | ||
| 3ffk_A | 377 | Crystal Structure Of Human Gelsolin Domains G1-G3 B | 7e-18 | ||
| 1rgi_G | 346 | Crystal Structure Of Gelsolin Domains G1-G3 Bound T | 3e-51 | ||
| 1rgi_G | 346 | Crystal Structure Of Gelsolin Domains G1-G3 Bound T | 2e-15 | ||
| 3fg7_A | 398 | The Crystal Structure Of Villin Domain 6 Length = 3 | 1e-41 | ||
| 1j72_A | 347 | Crystal Structure Of Mutant Macrophage Capping Prot | 5e-41 | ||
| 1j72_A | 347 | Crystal Structure Of Mutant Macrophage Capping Prot | 3e-17 | ||
| 1jhw_A | 347 | Ca2+-Binding Mimicry In The Crystal Structure Of Th | 2e-40 | ||
| 1jhw_A | 347 | Ca2+-Binding Mimicry In The Crystal Structure Of Th | 2e-17 | ||
| 1nph_A | 329 | Gelsolin Domains 4-6 In Active, Actin Free Conforma | 9e-36 | ||
| 1p8x_A | 344 | The Calcium-activated C-terminal Half Of Gelsolin L | 1e-34 | ||
| 1h1v_G | 331 | Gelsolin G4-G6ACTIN COMPLEX Length = 331 | 2e-34 | ||
| 3fg6_A | 371 | Structure Of The C-terminus Of Adseverin Length = 3 | 2e-34 | ||
| 2vik_A | 126 | Refined Structure Of The Actin-Severing Domain Vill | 3e-22 | ||
| 2vik_A | 126 | Refined Structure Of The Actin-Severing Domain Vill | 4e-11 | ||
| 3tu5_B | 297 | Actin Complex With Gelsolin Segment 1 Fused To Cobl | 5e-22 | ||
| 3tu5_B | 297 | Actin Complex With Gelsolin Segment 1 Fused To Cobl | 1e-08 | ||
| 1t44_G | 147 | Structural Basis Of Actin Sequestration By Thymosin | 5e-22 | ||
| 1t44_G | 147 | Structural Basis Of Actin Sequestration By Thymosin | 1e-09 | ||
| 1p8z_G | 136 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 8e-22 | ||
| 1p8z_G | 136 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 3e-09 | ||
| 1d4x_G | 126 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 9e-22 | ||
| 1d4x_G | 126 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 4e-09 | ||
| 2ff3_A | 150 | Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Mo | 1e-21 | ||
| 2ff3_A | 150 | Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Mo | 6e-09 | ||
| 1yag_G | 125 | Structure Of The Yeast Actin-human Gelsolin Segment | 2e-21 | ||
| 1yag_G | 125 | Structure Of The Yeast Actin-human Gelsolin Segment | 1e-08 | ||
| 3ci5_G | 126 | Complex Of Phosphorylated Dictyostelium Discoideum | 2e-21 | ||
| 3ci5_G | 126 | Complex Of Phosphorylated Dictyostelium Discoideum | 1e-08 | ||
| 3cip_G | 128 | Complex Of Dictyostelium Discoideum Actin With Gels | 2e-21 | ||
| 3cip_G | 128 | Complex Of Dictyostelium Discoideum Actin With Gels | 1e-08 | ||
| 1eqy_S | 125 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 3e-21 | ||
| 1eqy_S | 125 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 5e-08 | ||
| 1c0f_S | 127 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 3e-21 | ||
| 1c0f_S | 127 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 5e-08 | ||
| 1svq_A | 114 | Structure Of Severin Domain 2 In Solution Length = | 1e-10 | ||
| 1svq_A | 114 | Structure Of Severin Domain 2 In Solution Length = | 2e-06 | ||
| 1svy_A | 114 | Severin Domain 2, 1.75 Angstrom Crystal Structure L | 1e-10 | ||
| 1svy_A | 114 | Severin Domain 2, 1.75 Angstrom Crystal Structure L | 2e-06 | ||
| 1kcq_A | 104 | Human Gelsolin Domain 2 With A Cd2+ Bound Length = | 2e-10 | ||
| 2rjv_A | 67 | Crystal Structure Of The H41y Mutant Of Villin Head | 2e-07 | ||
| 1yu5_X | 67 | Crystal Structure Of The Headpiece Domain Of Chicke | 5e-07 | ||
| 3myc_A | 67 | Crystal Structure Of Hp67 H41f - P212121 Length = 6 | 5e-07 | ||
| 1yu8_X | 67 | Crystal Structure Of The R37a Mutant Of Villin Head | 3e-06 | ||
| 1yu7_X | 67 | Crystal Structure Of The W64y Mutant Of Villin Head | 4e-06 | ||
| 2llf_A | 107 | Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 | 5e-06 | ||
| 2llf_A | 107 | Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 | 2e-05 | ||
| 3nkj_A | 67 | Crystal Structure Of Hp67 L61g Length = 67 | 5e-06 | ||
| 3mye_X | 68 | Crystal Structure Of Hp67 L61gl Length = 68 | 9e-06 | ||
| 1zv6_A | 68 | Nmr Structure Of The Human Dematin Headpiece S74e M | 2e-04 | ||
| 2l3x_A | 67 | Villin Head Piece Domain Of Human Ablim2 Length = 6 | 3e-04 | ||
| 1qzp_A | 68 | Nmr Structure Of The Human Dematin Headpiece Domain | 4e-04 | ||
| 2ppz_A | 36 | Nmr Solution Structure Of The Villin Headpiece Muta | 7e-04 |
| >pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma Gelsolin. Length = 729 | Back alignment and structure |
|
| >pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma Gelsolin. Length = 729 | Back alignment and structure |
| >pdb|2FGH|A Chain A, Atp Bound Gelsolin Length = 731 | Back alignment and structure |
| >pdb|2FGH|A Chain A, Atp Bound Gelsolin Length = 731 | Back alignment and structure |
| >pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin Length = 782 | Back alignment and structure |
| >pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin Length = 782 | Back alignment and structure |
| >pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 | Back alignment and structure |
| >pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 | Back alignment and structure |
| >pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 | Back alignment and structure |
| >pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 | Back alignment and structure |
| >pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6 Length = 398 | Back alignment and structure |
| >pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 | Back alignment and structure |
| >pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 | Back alignment and structure |
| >pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 | Back alignment and structure |
| >pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 | Back alignment and structure |
| >pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation Identifies Sites Of Regulatory Calcium Ions Length = 329 | Back alignment and structure |
| >pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin Length = 344 | Back alignment and structure |
| >pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX Length = 331 | Back alignment and structure |
| >pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin Length = 371 | Back alignment and structure |
| >pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t, Determined By Solution Nmr, Minimized Average Structure Length = 126 | Back alignment and structure |
| >pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t, Determined By Solution Nmr, Minimized Average Structure Length = 126 | Back alignment and structure |
| >pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment Length = 297 | Back alignment and structure |
| >pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl Segment Length = 297 | Back alignment and structure |
| >pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 147 | Back alignment and structure |
| >pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 147 | Back alignment and structure |
| >pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156 Length = 136 | Back alignment and structure |
| >pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Residues Val26-Glu156 Length = 136 | Back alignment and structure |
| >pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 126 | Back alignment and structure |
| >pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 126 | Back alignment and structure |
| >pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif Hybrid In Complex With Actin Length = 150 | Back alignment and structure |
| >pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif Hybrid In Complex With Actin Length = 150 | Back alignment and structure |
| >pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 125 | Back alignment and structure |
| >pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 125 | Back alignment and structure |
| >pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 126 | Back alignment and structure |
| >pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 126 | Back alignment and structure |
| >pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin Length = 128 | Back alignment and structure |
| >pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin Length = 128 | Back alignment and structure |
| >pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 125 | Back alignment and structure |
| >pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 125 | Back alignment and structure |
| >pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 127 | Back alignment and structure |
| >pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 127 | Back alignment and structure |
| >pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution Length = 114 | Back alignment and structure |
| >pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution Length = 114 | Back alignment and structure |
| >pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure Length = 114 | Back alignment and structure |
| >pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure Length = 114 | Back alignment and structure |
| >pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound Length = 104 | Back alignment and structure |
| >pdb|2RJV|A Chain A, Crystal Structure Of The H41y Mutant Of Villin Headpiece, P 21 21 21 Space Group Length = 67 | Back alignment and structure |
| >pdb|1YU5|X Chain X, Crystal Structure Of The Headpiece Domain Of Chicken Villin Length = 67 | Back alignment and structure |
| >pdb|3MYC|A Chain A, Crystal Structure Of Hp67 H41f - P212121 Length = 67 | Back alignment and structure |
| >pdb|1YU8|X Chain X, Crystal Structure Of The R37a Mutant Of Villin Headpiece Length = 67 | Back alignment and structure |
| >pdb|1YU7|X Chain X, Crystal Structure Of The W64y Mutant Of Villin Headpiece Length = 67 | Back alignment and structure |
| >pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 Length = 107 | Back alignment and structure |
| >pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2 Length = 107 | Back alignment and structure |
| >pdb|3NKJ|A Chain A, Crystal Structure Of Hp67 L61g Length = 67 | Back alignment and structure |
| >pdb|3MYE|X Chain X, Crystal Structure Of Hp67 L61gl Length = 68 | Back alignment and structure |
| >pdb|1ZV6|A Chain A, Nmr Structure Of The Human Dematin Headpiece S74e Mutant Length = 68 | Back alignment and structure |
| >pdb|2L3X|A Chain A, Villin Head Piece Domain Of Human Ablim2 Length = 67 | Back alignment and structure |
| >pdb|1QZP|A Chain A, Nmr Structure Of The Human Dematin Headpiece Domain Length = 68 | Back alignment and structure |
| >pdb|2PPZ|A Chain A, Nmr Solution Structure Of The Villin Headpiece Mutant G34l Length = 36 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 | Back alignment and structure |
|---|
Score = 569 bits (1467), Expect = 0.0
Identities = 226/713 (31%), Positives = 356/713 (49%), Gaps = 41/713 (5%)
Query: 1 MGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQ 60
GD Y++L+T + G YD+H+W+G + SQDE+G AAI TV+LD L GRAVQHRE+Q
Sbjct: 38 TGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQ 97
Query: 61 GHESDKFLSYFKPCIIPLEGGVASGFRKTEEEEFET-RLYVCKGKRVVRMKQVPFARSSL 119
G ES FL YFK + +GGVASGF+ E RL KG+RVVR +VP + S
Sbjct: 98 GFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESF 157
Query: 120 NHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHDGNCNVAIVDDGKLDTES 179
N+ D FILD + IYQ+ G+ SN ER KA +V + +++ G V++ ++G
Sbjct: 158 NNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGA----- 212
Query: 180 DSGEFWVLFGGFAPIGKK-VATEDDVIAETTPPKLYSIEDSQVKIV------EGELSKSM 232
+ + G + + T + A KLY + + +V E ++
Sbjct: 213 EPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGA 272
Query: 233 LENNKCYLLDRGSE--VFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYE 290
L + C++LD G + +FVW G+ +EERKAA + A +FIS + PK +++ + +G E
Sbjct: 273 LRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGE 332
Query: 291 TYAFKSNFDSWPSGSTAPGA-EEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGG 349
T F+ F +W G A +++ + ST + +G G
Sbjct: 333 TPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTG 392
Query: 350 KMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQK 409
+ ++WR+ GS K + G+FY GD YI+LY Y G R+ + W G S +++
Sbjct: 393 QKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQG-QIIYNWQGAQSTQDEVA 451
Query: 410 MATRLANTMCNSLKGRPVQGRIFQGREPPQFVALF--QPMVVVKGGLCSGYKKSLADKGL 467
+ L + L G PVQ R+ QG+EP ++LF +PM+V KGG +
Sbjct: 452 ASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQ------- 504
Query: 468 TDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFE 527
S L ++ +S + ++ A +LNS++ F+L++ S + W G ++
Sbjct: 505 ----TAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEA 560
Query: 528 QQQLAAKVAEFLKPGVAIKHAKEGTESSAFWFPLGGKQSYTSKKVSPEIVRDPH---LFT 584
++ A ++ L+ EG+E +FW LGGK +Y + + D H LF
Sbjct: 561 EKTGAQELLRVLRA--QPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFA 618
Query: 585 FSFNKGKFEVEEVY-NFSQDDLLTEDILILDTHAEVFVWVGQSVDSKEKQSAFEFGQNYI 643
S G+F +EEV F Q+DL T+D+++LDT +VFVWVG+ +EK A + YI
Sbjct: 619 CSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYI 678
Query: 644 DMATSLEGLSPKVPLYKVTEGNEPCFCTTFF-SWDPTKATVQGNSFQKKVALL 695
D + + P+ V +G EP +F WD + +V + + +A L
Sbjct: 679 DTDPA--HRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWSV--DPLDRALAEL 727
|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126 | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126 | Back alignment and structure |
|---|
| >2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A Length = 67 | Back alignment and structure |
|---|
| >1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A Length = 68 | Back alignment and structure |
|---|
| >1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A Length = 67 | Back alignment and structure |
|---|
| >1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A Length = 88 | Back alignment and structure |
|---|
| >1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 Length = 37 | Back alignment and structure |
|---|
| >1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* Length = 35 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 940 | |||
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 100.0 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 100.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 100.0 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 100.0 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 100.0 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 100.0 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 100.0 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 100.0 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 100.0 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 100.0 | |
| 3tu5_B | 297 | Gelsolin, protein cordon-BLeu, thymosin beta-4; un | 100.0 | |
| 3tu5_B | 297 | Gelsolin, protein cordon-BLeu, thymosin beta-4; un | 100.0 | |
| 2vik_A | 126 | Villin 14T; actin-binding protein, capping protein | 100.0 | |
| 3cip_G | 128 | Gelsolin; actin, dictyostelium discoideum, actin-a | 100.0 | |
| 1t44_G | 147 | Chimera of gelsolin domain 1 and C-terminal domain | 100.0 | |
| 2ff3_A | 150 | Gelsolin; protein-protein complex, structural prot | 100.0 | |
| 1t44_G | 147 | Chimera of gelsolin domain 1 and C-terminal domain | 99.96 | |
| 3cip_G | 128 | Gelsolin; actin, dictyostelium discoideum, actin-a | 99.96 | |
| 2ff3_A | 150 | Gelsolin; protein-protein complex, structural prot | 99.96 | |
| 2vik_A | 126 | Villin 14T; actin-binding protein, capping protein | 99.95 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 99.94 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 99.92 | |
| 1qzp_A | 68 | Dematin; villin headpiece, actin binding domain, p | 99.91 | |
| 1yu8_X | 67 | Villin; alpha helix, 3-10 helix, structural protei | 99.91 | |
| 2k6m_S | 67 | Supervillin; SVHP, HP, headpiece, archvillin, acti | 99.91 | |
| 1ujs_A | 88 | Actin-binding LIM protein homologue; VHP domain, s | 99.9 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 99.87 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 99.86 | |
| 1und_A | 37 | Advillin, P92; actin binding, F-actin binding, cyt | 99.7 | |
| 1wy3_A | 35 | Villin; structural protein; HET: NLE; 0.95A {Synth | 99.65 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 95.17 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 95.12 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 94.91 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 94.44 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 94.19 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 93.77 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 92.56 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 92.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 88.85 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 88.46 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 88.35 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 87.65 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 87.3 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 86.01 |
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-158 Score=1443.39 Aligned_cols=671 Identities=32% Similarity=0.583 Sum_probs=609.1
Q ss_pred CCcEEEEeeeccCCCCCccEEEEEEccCCCChhhHhHHHHHHHHHHHHhCCCceEEEEeccCCcHHHHhccCCCEEEecC
Q 002298 1 MGDCYIVLQTTPGKGGAYLYDIHFWIGKDTSQDEAGTAAIKTVELDAVLGGRAVQHRELQGHESDKFLSYFKPCIIPLEG 80 (940)
Q Consensus 1 sGD~YIVL~t~~~~~~~~~~~Ih~WlG~~ss~de~g~AA~~aveLd~~Lgg~~vq~RevQG~Es~~Fls~Fk~~ii~~~G 80 (940)
+||||||||||...++.+.|+||||+|++||+||+|+||++|||||++|||.||||||+||+||++||+||+++|+|++|
T Consensus 38 ~gdsYivL~t~~~~~~~~~~~i~~W~G~~ss~de~g~aA~~tveLd~~lgg~~vq~Re~Qg~Es~~Fl~~Fk~~i~~~~G 117 (729)
T 1d0n_A 38 TGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKG 117 (729)
T ss_dssp TTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSCCEEEEEETTCCCHHHHHTCSSCEEEESC
T ss_pred CCCEEEEEEeccCCCCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCCHHHHHhccCCcEEeeC
Confidence 69999999999777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccccc-cceEEEEEecceeEEEEEeccCccccCCCCeEEEecCCeEEEEcCCCCCHHHHHHHHHHHHHhhhc
Q 002298 81 GVASGFRKTEEEE-FETRLYVCKGKRVVRMKQVPFARSSLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEK 159 (940)
Q Consensus 81 g~~sgf~~~e~~~-~~~rL~~vkGk~~v~~~EV~~s~sSLNsgDvFILd~~~~IyvW~G~~Sn~~Er~kA~~ia~~Ik~~ 159 (940)
|++|||+|++++. ..+|||||||+++++++|||++++|||++||||||++++||||+|++||..||.||+++|+.|++.
T Consensus 118 g~~sgf~~v~~~~~~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~~Er~kA~~~a~~i~~~ 197 (729)
T 1d0n_A 118 GVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDN 197 (729)
T ss_dssp CTTTTCCCCCCSSCCCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcccCcccccccCCCCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999998766 489999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCceEEEecCCCCCCCCChhhHHHHhCCCCCCCCCCCCccc-cccccCCCeEEEEe--CCeeEEEEc----cccccc
Q 002298 160 YHDGNCNVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVATEDD-VIAETTPPKLYSIE--DSQVKIVEG----ELSKSM 232 (940)
Q Consensus 160 ~~~G~~~i~iVdeG~~~~~~e~~eFw~~LGg~~~~~~~~~~~~~-~~~~~~~~rLy~v~--~G~l~~~e~----~l~q~~ 232 (940)
+|+|+|+|.+|+||+ |+.+||++|||..+++.....+.. .......+|||+|+ +|++++.++ .|+|+|
T Consensus 198 er~g~~~i~~v~Eg~-----e~~eFw~~LGg~~~~~~~~~~~~~~~~~~~~~~rLy~vs~~~G~l~~~ev~~~~~~~q~~ 272 (729)
T 1d0n_A 198 ERSGRAQVSVFEEGA-----EPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGA 272 (729)
T ss_dssp SGGGCSEEEEEETTC-----CCHHHHHHHCSCCCCCCCCGGGSCCCCCCCCCCEEEEEECSSSSCEEEEEESSSSBCGGG
T ss_pred hcCCCccEEEecCCC-----ChHHHHHHcCCCcccCCCCcchhhhhhccccCcEEEEEECCCCCEEEEEeccCCCCCHHH
Confidence 888999999999985 677999999999777644321111 12235678999998 689988776 499999
Q ss_pred cCCCceEEecCCc-e-EEEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCCCChhhHhcccCCCCCCCCC--
Q 002298 233 LENNKCYLLDRGS-E-VFVWVGRVTQVEERKAASQAAEEFISSQNRPKSIRITRVIQGYETYAFKSNFDSWPSGSTAP-- 308 (940)
Q Consensus 233 L~s~~vyILD~g~-e-IyVWiGk~as~~eRk~A~~~A~~yl~~~~Rp~~t~I~~V~eG~Ep~~FK~~F~~W~~~~~~~-- 308 (940)
|++++|||||||. + ||||+|++|+..||+.||.+|++|++..+||.||+|++|.||.||.+||++|.+|++...+.
T Consensus 273 L~~~dv~ILD~g~~~~ifVW~Gk~a~~~er~~A~~~A~~y~~~~~~p~~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~~~~ 352 (729)
T 1d0n_A 273 LRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGL 352 (729)
T ss_dssp CCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHHHHHHTTCCTTCEEEEEETTCCCHHHHTTBTTCCCTTCSSSS
T ss_pred cCCCCEEEEecCCccEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCCHHHHHHHhcCCCccccccc
Confidence 9999999999994 4 99999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCccchhhHHHHhhhccccccccCCCCCCCCCCCCcccCCccEEEEEEeCCceeeCCCCccceeeeCcEEEEEEeeecCC
Q 002298 309 GAEEGRGKVAALLKQQGVGIKGMGKSTPTNEEVPPLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGD 388 (940)
Q Consensus 309 ~~~~~rgkva~~~~~~~~dv~~l~~~~p~~~e~~~~~d~sg~l~VWrIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~ 388 (940)
+.....+++| .++++++|+..|+...+++++.+++|+++|+++||||+++++++||++.||+||+|||||||||| ..+
T Consensus 353 ~~~~~~~~~a-~~~~~~~d~~~l~~~p~~~~~~~~~d~g~g~l~vWrIe~~~~~~vp~~~~G~Fy~gd~Yivl~ty-~~~ 430 (729)
T 1d0n_A 353 GLAYLSSHIA-HVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNY-RHG 430 (729)
T ss_dssp SCSCCCGGGT-TCCCCCCCTTTGGGCHHHHHHHTCSSCSCSCEEEEEEETTEEEECCGGGTTEEETTSEEEEEEEE-EET
T ss_pred cccccccccc-cccccccChHHhccCcccccccccccCCCCcEEEEEEeCCEEEECChhhccEEcCCcEEEEEEEE-ecC
Confidence 1222223454 36688999999865433566778899999999999999999999999999999999999999999 478
Q ss_pred CCcceEEEEEcCCCCChHhHHHHHHHHHHHHhhcCCCCeEEEeecCCCCHHHHhhcC-C-eEEEeCccccCCccccccCC
Q 002298 389 RKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQ-P-MVVVKGGLCSGYKKSLADKG 466 (940)
Q Consensus 389 ~~~~~~iy~W~G~~ss~de~~~aa~la~~l~~~l~g~~vq~Rv~QGkEp~~Fl~iF~-~-~ii~~GG~ss~~~~~~~e~~ 466 (940)
++.+|+||||||++|+++|+++||++|++|++.++|.|+|+||+||+||+|||+||+ + |||++||+++. +
T Consensus 431 g~~~~~iyfW~G~~ss~de~g~aa~~~veLd~~lgg~~vq~R~~Qg~E~~~Fl~~F~g~~~ii~~Gg~~~~--~------ 502 (729)
T 1d0n_A 431 SRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSRE--G------ 502 (729)
T ss_dssp TEEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTSCSEEEEEETTCCCHHHHTTSTTSCEEEESSCCCSS--C------
T ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCceEEecccCCCCHHHHHhcCCCeEEEEeCCcccc--C------
Confidence 899999999999999999999999999999999999999999999999999999998 5 89999998752 1
Q ss_pred CCCccccCCceeEEEEEecCCCCceEEEeccCcCCCCCCCcEEeeeCCeEEEEECCCCCHHHHHHHHHHHHHhCCCceEE
Q 002298 467 LTDETYTADSIALIRISGTSIHNNKTEQVDAVATSLNSSECFLLQSGSTMFTWHGNQSTFEQQQLAAKVAEFLKPGVAIK 546 (940)
Q Consensus 467 ~~~~~~~~~~~~Lf~V~G~~~~~~~aveV~~~asSLnS~d~FIL~~~~~vyvW~G~~ss~~er~~A~~va~~l~~~~~~~ 546 (940)
..+....+|||||+|+.+.+++++||++.++||||+|||||+++++||+|+|++|+.+||++|+.+|+.|.. +++
T Consensus 503 ---~~~~~~~~rLf~vrg~~~~~~~~~eV~~~~ssLns~d~fIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~--~~~ 577 (729)
T 1d0n_A 503 ---GQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRA--QPV 577 (729)
T ss_dssp ---CCCCCCSSEEEEEEECTTSCEEEEEECCCGGGCCSSSEEEEECSSCCBCEECTTCCHHHHHHHHHHHHHHTC--CCC
T ss_pred ---ccCCCCCCEEEEEECCCCCceEEEEecCChhhcCcCCeEEEecCCeEEEEECCCCCHHHHHHHHHHHHHhcc--CcE
Confidence 112334689999999988899999999999999999999999999999999999999999999999999984 478
Q ss_pred ecccCCcccccccccCCcccCCCCCCC-CC--CCCCCeeEEEEecCCeeeEEeec-ccCccCCCCCCEEEEeCCCEEEEE
Q 002298 547 HAKEGTESSAFWFPLGGKQSYTSKKVS-PE--IVRDPHLFTFSFNKGKFEVEEVY-NFSQDDLLTEDILILDTHAEVFVW 622 (940)
Q Consensus 547 ~v~EG~E~~~FW~~LGGk~~y~~~~~~-~~--~~~~prLF~~S~~~G~~~v~EI~-~F~QdDL~~ddv~ILD~~~eIfVW 622 (940)
+|+||+||++||.+|||+.+|++.... .+ ....||||+||+.+|+|.++||. +|+|+||+++|||||||+++||||
T Consensus 578 ~v~EG~E~~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvW 657 (729)
T 1d0n_A 578 QVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVW 657 (729)
T ss_dssp CEETTCCCHHHHHTTTSCCCCCCCCCCSTTHHHHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEE
T ss_pred EEeCCCChHHHHHhcCCCCccCcccccccccccccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEE
Confidence 899999999999999999999987654 22 15789999999999999999999 999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCcEEEecCCCCCcccccccc-cCCCCccccCccHHHHHHHH
Q 002298 623 VGQSVDSKEKQSAFEFGQNYIDMATSLEGLSPKVPLYKVTEGNEPCFCTTFFS-WDPTKATVQGNSFQKKVALL 695 (940)
Q Consensus 623 iG~~a~~~ek~~Al~~A~~Yl~~~~~~~~r~~~~pI~~V~qG~EP~~Ft~~F~-Wd~~k~~~~~~s~~~~~~~~ 695 (940)
||+.|+..||+.||.+|++|+++++. +|++.+||++|.+|.||+.||++|+ ||+.+|. +++|+++.+.|
T Consensus 658 iG~~a~~~er~~al~~A~~Y~~~~~~--~r~~~~pi~~V~~G~Ep~~F~~~F~~Wd~~~~~--~~~~~~~~~~~ 727 (729)
T 1d0n_A 658 VGKDSQDEEKTEALTSAKRYIDTDPA--HRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWS--VDPLDRALAEL 727 (729)
T ss_dssp ECTTSCHHHHSSHHHHHHHHHHHCTT--CCCTTCCEEEEETTCCCHHHHTTCTTCCGGGGT--SCHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhCcc--cCCCCCcEEEEeCCCCCHHHHhhhhhcCccccC--CccHHHHHHhh
Confidence 99999999999999999999999776 6788899999999999999999999 9999975 57899998776
|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* | Back alignment and structure |
|---|
| >1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* | Back alignment and structure |
|---|
| >2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* | Back alignment and structure |
|---|
| >2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A | Back alignment and structure |
|---|
| >1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A | Back alignment and structure |
|---|
| >2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A | Back alignment and structure |
|---|
| >1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 | Back alignment and structure |
|---|
| >1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 940 | ||||
| d3cipg1 | 124 | d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) | 1e-36 | |
| d3cipg1 | 124 | d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) | 4e-34 | |
| d2fh1a1 | 121 | d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien | 1e-34 | |
| d2fh1a1 | 121 | d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien | 3e-29 | |
| d2vika_ | 126 | d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic | 2e-32 | |
| d2vika_ | 126 | d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic | 2e-31 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-31 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-18 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 2e-15 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 8e-13 | |
| d1svya_ | 102 | d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di | 0.003 | |
| d1j72a1 | 114 | d.109.1.1 (A:11-124) Macrophage capping protein Ca | 2e-31 | |
| d1j72a1 | 114 | d.109.1.1 (A:11-124) Macrophage capping protein Ca | 3e-31 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 3e-31 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 4e-16 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 3e-15 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 6e-14 | |
| d1j72a2 | 116 | d.109.1.1 (A:125-240) Macrophage capping protein C | 7e-04 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 1e-29 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 2e-16 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 1e-15 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 5e-10 | |
| d1kcqa_ | 104 | d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax | 0.002 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 2e-25 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 5e-20 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 4e-15 | |
| d2fh1a3 | 113 | d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien | 1e-05 | |
| d1yu5x1 | 67 | a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) | 2e-22 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 3e-22 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 1e-21 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 2e-12 | |
| d2fh1a2 | 96 | d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien | 5e-09 | |
| d1qzpa_ | 68 | a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId | 4e-22 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 2e-20 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 2e-19 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 4e-14 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 1e-10 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 5e-05 | |
| d1d0na3 | 121 | d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal | 6e-04 | |
| d1ujsa_ | 88 | a.14.1.1 (A:) Actin-binding LIM protein homologue | 1e-19 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 1e-18 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 3e-18 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 4e-13 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 3e-11 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 8e-08 | |
| d1j72a3 | 107 | d.109.1.1 (A:241-347) Macrophage capping protein C | 3e-04 | |
| d1unda_ | 36 | a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxI | 4e-15 | |
| d1yu8x1 | 35 | a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) | 2e-14 | |
| d1pd0a4 | 173 | d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha | 0.003 |
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: Actin depolymerizing proteins family: Gelsolin-like domain: Gelsolin species: Human (Homo sapiens) [TaxId: 9606]
Score = 131 bits (332), Expect = 1e-36
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 343 PLLEGGGK---MEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWF 399
P GK +++WR+ +P G F++GD Y++L T + Y L W
Sbjct: 5 PEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWL 64
Query: 400 GKDSIEEDQKMATRLANTMCNSLKGRPVQGRIFQGREPPQFVALFQP-MVVVKGGLCSGY 458
G + +++ A + + L GR VQ R QG E F+ F+ + KGG+ SG+
Sbjct: 65 GNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF 124
|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126 | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 67 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 | Back information, alignment and structure |
|---|
| >d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} Length = 36 | Back information, alignment and structure |
|---|
| >d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 35 | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 940 | |||
| d2fh1a1 | 121 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3cipg1 | 124 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1j72a1 | 114 | Macrophage capping protein Cap G {Human (Homo sapi | 100.0 | |
| d2vika_ | 126 | Villin, domain 1 (res. 1-126) {Chicken (Gallus gal | 100.0 | |
| d3cipg1 | 124 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1j72a1 | 114 | Macrophage capping protein Cap G {Human (Homo sapi | 99.94 | |
| d2vika_ | 126 | Villin, domain 1 (res. 1-126) {Chicken (Gallus gal | 99.94 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1qzpa_ | 68 | Dematin {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1yu5x1 | 67 | Villin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.91 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 99.91 | |
| d2fh1a1 | 121 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1ujsa_ | 88 | Actin-binding LIM protein homologue KIAA0843 {Huma | 99.9 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 99.88 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 99.87 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 99.86 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 99.85 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 99.84 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 99.8 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 99.78 | |
| d1unda_ | 36 | Advillin {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1yu8x1 | 35 | Villin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.68 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.11 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.34 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.0 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.95 |
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: Actin depolymerizing proteins family: Gelsolin-like domain: Gelsolin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-36 Score=282.43 Aligned_cols=113 Identities=34% Similarity=0.708 Sum_probs=107.6
Q ss_pred CcccCCccEEEEEEeCCceeeCCCCccceeeeCcEEEEEEeeecCCCCcceEEEEEcCCCCChHhHHHHHHHHHHHHhhc
Q 002298 343 PLLEGGGKMEVWRINGSAKTSLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWFGKDSIEEDQKMATRLANTMCNSL 422 (940)
Q Consensus 343 ~~~d~sg~l~VWrIe~~~~~~v~~~~~G~FysgDcYIVlytY~~~~~~~~~~iy~W~G~~ss~de~~~aa~la~~l~~~l 422 (940)
|.|||+|+++||||+++++++||++.+|+||+||||||+|||. .+++.+++||||+|++|+++++++||++|++|++.+
T Consensus 1 ~~Ddg~G~~~VWrI~~~~~~~vp~~~~G~Fy~gd~Yiv~~~y~-~~g~~~~~iy~W~G~~ss~~e~~~aa~~a~eld~~l 79 (121)
T d2fh1a1 1 MDDDGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYR-HGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEEL 79 (121)
T ss_dssp CCSCSCSEEEEEEEETTEEEECCGGGTTEEETTSEEEEEEEEE-ETTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEEEeCCEEeECCcccccEEeCCCeEEEEEEEE-cCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999999994 788899999999999999999999999999999999
Q ss_pred CCCCeEEEeecCCCCHHHHhhcCC--eEEEeCcccc
Q 002298 423 KGRPVQGRIFQGREPPQFVALFQP--MVVVKGGLCS 456 (940)
Q Consensus 423 ~g~~vq~Rv~QGkEp~~Fl~iF~~--~ii~~GG~ss 456 (940)
+|.|+|+||+||+||+|||+||++ |||++||.+.
T Consensus 80 ~g~~vq~R~~QG~Ep~~Fl~~F~g~~~Ii~~Gg~~~ 115 (121)
T d2fh1a1 80 GGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSR 115 (121)
T ss_dssp TSCSEEEEEETTCCCHHHHGGGTTCCEEEESCCCCT
T ss_pred CCCceEEeccCCCCCHHHHHHhCCCeEEEECCCccc
Confidence 999999999999999999999983 7889999754
|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|