Citrus Sinensis ID: 002303
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 939 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C585 | 871 | Ubiquitin carboxyl-termin | yes | no | 0.874 | 0.942 | 0.536 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.880 | 0.895 | 0.426 | 0.0 | |
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | no | no | 0.807 | 0.821 | 0.460 | 1e-180 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.801 | 0.827 | 0.461 | 1e-178 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.791 | 0.832 | 0.451 | 1e-176 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | yes | no | 0.621 | 0.607 | 0.399 | 1e-118 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.814 | 0.796 | 0.338 | 1e-118 | |
| A6QR55 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.624 | 0.608 | 0.404 | 1e-118 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.617 | 0.602 | 0.400 | 1e-115 | |
| Q5RCD3 | 963 | Ubiquitin carboxyl-termin | yes | no | 0.618 | 0.603 | 0.406 | 1e-114 |
| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function desciption |
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Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/870 (53%), Positives = 597/870 (68%), Gaps = 49/870 (5%)
Query: 95 QKVYLVPYRWWKESQ------------ILLAEKVG---GVLYEVLSNDDNTDLEILLHLK 139
Q+VY VP RWWK++Q IL G G ++++N N+D IL L+
Sbjct: 24 QRVYFVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLINNIFNSD--ILFDLR 81
Query: 140 KKEGSV-DSDCGEGGVSVREYALVPEGMWLRALKWHNDSK---AAVKDFGSSFAADEQDV 195
++ ++ + + GE VS R++ALV MWL+ALKW++D K VK F S+ D DV
Sbjct: 82 REGDALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVKSF-SAGGVDRGDV 140
Query: 196 FPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWDFSGQTTQFLMND 255
+P+Q+RLSV QETNSL VKI +DN V+ ++RAC +F SE L IWD SGQTT F +D
Sbjct: 141 YPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWDISGQTTLFFESD 200
Query: 256 RVTMSDDFSAKPGEEVFLQLQVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNL 315
V+ S D + +E+ L+LQ++G SDS+ ++ E K S + NG N
Sbjct: 201 -VSNSKDCQQQADQEILLELQIYGLSDSI-----KLKESKKEDGSTQQTNGITNGMNGGT 254
Query: 316 NSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKE 375
SNS+ G LGLTGL+NLGNTCFMNS++QCLAHTP++VD+FLG+Y KE
Sbjct: 255 VFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKE 314
Query: 376 INYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFL 435
IN +NPLG+ GE+ALAFGDLLR LWAPG VAPR FK KLA FAPQFSG+NQHDSQE L
Sbjct: 315 INLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFAPQFSGFNQHDSQELL 374
Query: 436 AFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495
AFLLDGLHEDLNRVK KPY+EAKD +G+P+ EVA+EYWRNH ARNDSIIVD+CQGQY+S
Sbjct: 375 AFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKST 434
Query: 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDL 555
LVCP+C KVSV FDP MYLSLP+P T+MRTM +TV+S DGS++P P TV VPK+G+F+DL
Sbjct: 435 LVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDL 494
Query: 556 IDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSL 615
AL T C L E LLV E+Y ++I R L+EP+D L LIRD DKLV YRL KD+ L
Sbjct: 495 HKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDKLVVYRLKKDANNSPL 554
Query: 616 VLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLFLKLLDPFLMP----V 671
+++MH++ EE G+ S WK FG PLV RL D+ NGSD+ L+LKLL F MP
Sbjct: 555 IVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLYLKLLSSFKMPTEFFT 614
Query: 672 GDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEP----HLSDDFQFYRLD 727
+ + ++E V + +D V +++E+ +P +L+DD R +
Sbjct: 615 ENLENPTEEEATDKTDTDGTTSVEDTNSTD---VKETTESLPDPVLRLYLTDD----RGN 667
Query: 728 SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPES 787
SI E+ +P++ S K L + +W K ++ YDTCLLSSL EV K T+ P ES
Sbjct: 668 SIE-AEMLKEKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEVSKSG--TKRPQES 721
Query: 788 VSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFK 847
VSL+KCLEAFL EEPLGP+DMWYCP CK+H QA KKLDLWR P+ILVIHLKRFS+SR+ K
Sbjct: 722 VSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMK 781
Query: 848 SKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDLGHKRWF 907
+KL+ YVDFP+D+LDLS+Y+ KN Q + RY+LYAISNHYG MGGGHYTA+V G RW+
Sbjct: 782 NKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGHYTAYVHHGGDRWY 841
Query: 908 EFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
+FDD V+ +S++ IKTSAAYVLFYKR+ D
Sbjct: 842 DFDDSHVHQISQEKIKTSAAYVLFYKRLVD 871
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 939 | ||||||
| 225439374 | 961 | PREDICTED: ubiquitin carboxyl-terminal h | 0.948 | 0.927 | 0.606 | 0.0 | |
| 359479088 | 882 | PREDICTED: ubiquitin carboxyl-terminal h | 0.887 | 0.944 | 0.566 | 0.0 | |
| 449501186 | 949 | PREDICTED: ubiquitin carboxyl-terminal h | 0.941 | 0.931 | 0.570 | 0.0 | |
| 255549649 | 889 | Ubiquitin carboxyl-terminal hydrolase, p | 0.897 | 0.948 | 0.565 | 0.0 | |
| 449444827 | 877 | PREDICTED: ubiquitin carboxyl-terminal h | 0.869 | 0.930 | 0.545 | 0.0 | |
| 356543638 | 874 | PREDICTED: ubiquitin carboxyl-terminal h | 0.886 | 0.951 | 0.548 | 0.0 | |
| 357453291 | 871 | Ubiquitin carboxyl-terminal hydrolase [M | 0.867 | 0.935 | 0.547 | 0.0 | |
| 356550050 | 872 | PREDICTED: ubiquitin carboxyl-terminal h | 0.886 | 0.954 | 0.548 | 0.0 | |
| 257050978 | 871 | RecName: Full=Ubiquitin carboxyl-termina | 0.874 | 0.942 | 0.536 | 0.0 | |
| 13374862 | 901 | ubiquitin-specific protease-like protein | 0.874 | 0.911 | 0.517 | 0.0 |
| >gi|225439374|ref|XP_002270470.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/946 (60%), Positives = 693/946 (73%), Gaps = 55/946 (5%)
Query: 22 LSRVSLSTLRLCKSL----LSKTLAGLFSAMDHDYPFSSEGDDHLFEFDYSNSSRQNNYF 77
++ ++S LR CKSL L KTL+ F MD + G+D FEFD S+R +
Sbjct: 39 ITHFAISALRFCKSLFYYLLFKTLS--FFTMDDIF-----GEDDFFEFDDGRSNRVS--- 88
Query: 78 SQPTATNSRGLFDDDDR--QKVYLVPYRWWKESQILLAEKVGGVLY-----------EVL 124
+++ R +KVY VPYRW E+ + G+LY E++
Sbjct: 89 ------------EEEIRVEEKVYFVPYRWLNEAHGTSLGENEGILYTASSSTCVGSMEIM 136
Query: 125 SNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHNDSKAAVKDF 184
S+D D +I+L+L+++E + ++ E GVS +EYAL+ E MWLRALKWHNDS AA KD
Sbjct: 137 SSD--FDSQIVLNLRREEDNGKNEAAEEGVSGQEYALLSESMWLRALKWHNDSNAAEKDV 194
Query: 185 GSSFAAD--EQDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIW 242
GS AA+ QDVFPLQIRLSVS TNSLLVKIS +DN +++Y+RA +F SE+L+IW
Sbjct: 195 GSILAAEVYTQDVFPLQIRLSVSWGTNSLLVKISQKDNPIEIYERASTIFRVESELLHIW 254
Query: 243 DFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSV----GETNDEMAEHYKII 298
DFSGQTT LMNDR ++D+ ++ E++ L+LQV+G +DS+ G+ +D+M K+
Sbjct: 255 DFSGQTTLLLMNDRTKSANDYLSRSDEQILLELQVYGLTDSMKGRGGKKDDQMVGQTKME 314
Query: 299 DSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCL 358
S +GS+K+NGS N +SY T ++ G G LGLTGL N+GNTCFMNSAIQCL
Sbjct: 315 GSFVSGSLKMNGSTGNFDSYFTLPHTKLFGRGYREAGFLGLTGLHNIGNTCFMNSAIQCL 374
Query: 359 AHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLAN 418
HTP++VDYFLGDY+KEINYENPLG+NGELALAFGDLLRKLWAPG PVAPRMFKLKL++
Sbjct: 375 VHTPKLVDYFLGDYRKEINYENPLGMNGELALAFGDLLRKLWAPGATPVAPRMFKLKLSS 434
Query: 419 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRA 478
FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY+EA D +G+P+EEVA+EYWRNH A
Sbjct: 435 FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYIEAGDPDGRPDEEVADEYWRNHLA 494
Query: 479 RNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTM 538
RNDSIIV+LCQGQ+RSMLVCPVC KVSVTFDP MYLSLP+PSTTMRTMTVTVLSTDG+T+
Sbjct: 495 RNDSIIVNLCQGQFRSMLVCPVCKKVSVTFDPFMYLSLPLPSTTMRTMTVTVLSTDGTTL 554
Query: 539 PAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDE 598
P P TVTVPK GR +DLI ALS C LRN E+LLVAEIY + I R L+EPSD L LIRD
Sbjct: 555 PYPCTVTVPKCGRLKDLIQALSIACSLRNDERLLVAEIYNNCIIRYLEEPSDSLALIRDG 614
Query: 599 DKLVAYRLPKDS---ETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655
D+LVAYRL +DS +T SLV+FMHER E+ G+ L K+FG PLV R+S+ +NG D
Sbjct: 615 DRLVAYRLSEDSKDCDTSSLVVFMHERVEKHDINGKAELCRKMFGIPLVVRMSECSNGCD 674
Query: 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEP 715
I K FLKLLDPF MP D D AG N D+ +ED SS VS+ DA SD SE GDE
Sbjct: 675 IHKQFLKLLDPFFMPTEDSLD-DITAGNAANEDTEMEDAISSTVSNGDANSD-SETGDEL 732
Query: 716 HLSDDFQFYRLD---SIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLM 772
L ++F FY D S + + I MN+ IS + L + V W +MIEKYDTCLLS L
Sbjct: 733 QLGNNFSFYLTDEKGSTKGSNINMNKLELISQLPRRLNVLVHWPYRMIEKYDTCLLSLLP 792
Query: 773 EVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDI 832
E+CKP+LF + P ESVSLYKCLEAFLKEEPLGPEDMW CP CKKH QASKKLDLWR P+I
Sbjct: 793 EICKPELFAKRPQESVSLYKCLEAFLKEEPLGPEDMWNCPCCKKHRQASKKLDLWRLPEI 852
Query: 833 LVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGG 892
LVIHLKRFS+SR++K+KL+T++DFPIDDLDLS Y+ KNS LSN Y LYAI NHYGGMG
Sbjct: 853 LVIHLKRFSYSRFWKNKLETFIDFPIDDLDLSTYIAQKNSHLSNHYKLYAICNHYGGMGS 912
Query: 893 GHYTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSDV 938
GHYTAFV G +W+EFDD RV P+ ED IKTSAAYVLFY+R+ D
Sbjct: 913 GHYTAFVRHGGNQWYEFDDSRVSPIGEDEIKTSAAYVLFYQRIPDT 958
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479088|ref|XP_003632213.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449501186|ref|XP_004161301.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255549649|ref|XP_002515876.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223545031|gb|EEF46545.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449444827|ref|XP_004140175.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356543638|ref|XP_003540267.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357453291|ref|XP_003596922.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485970|gb|AES67173.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356550050|ref|XP_003543403.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|257050978|sp|Q9C585.2|UBP8_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; AltName: Full=Deubiquitinating enzyme 8; Short=AtUBP8; AltName: Full=Ubiquitin thioesterase 8; AltName: Full=Ubiquitin-specific-processing protease 8 | Back alignment and taxonomy information |
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| >gi|13374862|emb|CAC34496.1| ubiquitin-specific protease-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 939 | ||||||
| TAIR|locus:505006627 | 871 | UBP8 "ubiquitin-specific prote | 0.891 | 0.960 | 0.511 | 4.6e-224 | |
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.814 | 0.828 | 0.445 | 3.1e-163 | |
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.817 | 0.843 | 0.434 | 2.7e-162 | |
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.781 | 0.794 | 0.435 | 7.7e-158 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.809 | 0.852 | 0.434 | 5.5e-157 | |
| UNIPROTKB|F1NE88 | 963 | USP4 "Ubiquitin carboxyl-termi | 0.374 | 0.365 | 0.408 | 9.8e-118 | |
| UNIPROTKB|F1NE89 | 966 | USP4 "Ubiquitin carboxyl-termi | 0.374 | 0.364 | 0.408 | 1.2e-117 | |
| ZFIN|ZDB-GENE-081104-421 | 990 | usp11 "ubiquitin specific pept | 0.388 | 0.368 | 0.395 | 8.7e-114 | |
| ZFIN|ZDB-GENE-041008-187 | 1009 | usp4 "ubiquitin specific prote | 0.309 | 0.288 | 0.479 | 1.4e-113 | |
| UNIPROTKB|Q13107 | 963 | USP4 "Ubiquitin carboxyl-termi | 0.309 | 0.302 | 0.455 | 6.3e-107 |
| TAIR|locus:505006627 UBP8 "ubiquitin-specific protease 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2163 (766.5 bits), Expect = 4.6e-224, P = 4.6e-224
Identities = 452/883 (51%), Positives = 584/883 (66%)
Query: 80 PTATNSRGLFDDDDRQKVYLVPYRWWKESQILL-AEKVGG--VLY------------EVL 124
P +T R + + Q+VY VP RWWK++Q + +E V +LY +++
Sbjct: 10 PDSTTQR-IDSFNGEQRVYFVPLRWWKDAQDSMPSESVEKREILYTASCGSSYGGPMKLI 68
Query: 125 SNDDNTDLEILLHLKKKEGSVDS-DCGEGGVSVREYALVPEGMWLRALKWHNDSK---AA 180
+N N+D IL L+++ ++ + + GE VS R++ALV MWL+ALKW++D K
Sbjct: 69 NNIFNSD--ILFDLRREGDALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKG 126
Query: 181 VKDFGSSFAADEQDVFPLQIRLSVSQETNSLLVKISLEDNKVDLYKRACNLFISVSEMLY 240
VK F S+ D DV+P+Q+RLSV QETNSL VKI +DN V+ ++RAC +F SE L
Sbjct: 127 VKSF-SAGGVDRGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLR 185
Query: 241 IWDFSGQTTQFLMNDRVTMSDDFSAKPGEEVFLQLQVHGFSDSVGETNDEMAEHYKIIDS 300
IWD SGQTT F +D V+ S D + +E+ L+LQ++G SDS+ ++ E K S
Sbjct: 186 IWDISGQTTLFFESD-VSNSKDCQQQADQEILLELQIYGLSDSI-----KLKESKKEDGS 239
Query: 301 ICNGSVKINGSNDNLNSYITXXXXXXXXXXXXXXCXXXXXXXXXXXXXCFMNSAIQCLAH 360
+ NG N CFMNS++QCLAH
Sbjct: 240 TQQTNGITNGMNGGTVFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQCLAH 299
Query: 361 TPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFA 420
TP++VD+FLG+Y KEIN +NPLG+ GE+ALAFGDLLR LWAPG VAPR FK KLA FA
Sbjct: 300 TPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKLARFA 359
Query: 421 PQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAXXXXXXXXXXXYWRNHRARN 480
PQFSG+NQHDSQE LAFLLDGLHEDLNRVK KPY+EAKD YWRNH ARN
Sbjct: 360 PQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARN 419
Query: 481 DSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPA 540
DSIIVD+CQGQY+S LVCP+C KVSV FDP MYLSLP+P T+MRTM +TV+S DGS++P
Sbjct: 420 DSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGSSLPI 479
Query: 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDLLGLIRDEDK 600
P TV VPK+G+F+DL AL T C L E LLV E+Y ++I R L+EP+D L LIRD DK
Sbjct: 480 PLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIRDGDK 539
Query: 601 LVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSDIRKLF 660
LV YRL KD+ L+++MH++ EE G+ S WK FG PLV RL D+ NGSD+ L+
Sbjct: 540 LVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDVENLY 599
Query: 661 LKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDA--VSDSSEAGDEP--- 715
LKLL F MP ++ + + + D D T+S V D ++ V +++E+ +P
Sbjct: 600 LKLLSSFKMPTEFFTENLENPTEEEATDKTDTDGTTS-VEDTNSTDVKETTESLPDPVLR 658
Query: 716 -HLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEV 774
+L+DD R +SI +K +P++ S K L + +W K ++ YDTCLLSSL EV
Sbjct: 659 LYLTDD----RGNSIEAEMLK-EKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEV 710
Query: 775 CKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILV 834
K T+ P ESVSL+KCLEAFL EEPLGP+DMWYCP CK+H QA KKLDLWR P+ILV
Sbjct: 711 SKSG--TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILV 768
Query: 835 IHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGH 894
IHLKRFS+SR+ K+KL+ YVDFP+D+LDLS+Y+ KN Q + RY+LYAISNHYG MGGGH
Sbjct: 769 IHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGH 828
Query: 895 YTAFVDLGHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937
YTA+V G RW++FDD V+ +S++ IKTSAAYVLFYKR+ D
Sbjct: 829 YTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLVD 871
|
|
| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NE88 USP4 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NE89 USP4 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-081104-421 usp11 "ubiquitin specific peptidase 11" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041008-187 usp4 "ubiquitin specific protease 4 (proto-oncogene)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q13107 USP4 "Ubiquitin carboxyl-terminal hydrolase 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C585 | UBP8_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.5367 | 0.8743 | 0.9425 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.921 |
| 3rd Layer | 3.4.19.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | fgenesh1_pm.C_scaffold_6001734 | annotation not avaliable (891 aa) | ||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 939 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-136 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 3e-58 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-48 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-41 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 6e-37 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 2e-36 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-32 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 8e-29 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-27 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 4e-24 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 2e-23 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-22 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-21 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 3e-19 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 5e-18 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-15 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 4e-15 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-13 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 2e-13 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 5e-12 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 9e-12 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-11 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-11 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 3e-11 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 6e-11 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-10 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 1e-09 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-08 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 3e-08 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 5e-08 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 1e-07 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-07 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 7e-07 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 4e-06 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 6e-06 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 7e-06 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 9e-05 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 2e-04 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 3e-04 | |
| cd02672 | 268 | cd02672, Peptidase_C19P, A subfamily of Peptidase | 9e-04 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 0.002 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 428 bits (1102), Expect = e-136
Identities = 246/734 (33%), Positives = 337/734 (45%), Gaps = 101/734 (13%)
Query: 223 DLYKRACNLFISVSEMLYIWDFS----GQTT---QFLMNDRVTMSDDFSAKPGEEVFLQL 275
DL +R N F+ S+ +WD G F RV SD P
Sbjct: 171 DLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHP-------- 222
Query: 276 QVHGFSDSVGETNDEMAEHYKIIDSICNGSVKINGSNDNLNSYITSSNSVRRGSGNGGVC 335
+ D KI + D L +S+
Sbjct: 223 ---------------LTRLELFEDRSVLLLSKITRNPDWL------VDSIVDDHNRSINK 261
Query: 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGD 394
G GLRNLGNTC+MNSA+QCL HT E+ DYFL D Y++ IN ENPLG++G +A A+ D
Sbjct: 262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYAD 321
Query: 395 LLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPY 454
L+++L+ P FK + +F +FSGY+Q DSQEF+AFLLDGLHEDLNR+ KPY
Sbjct: 322 LIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPY 381
Query: 455 LEAKDAEGQPEEEV---AEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPL 511
D + V A+E W H RNDSII DL QG Y+S L CP C VS+TFDP
Sbjct: 382 TSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPF 441
Query: 512 MYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKL 571
M L+LP+P + + T+ V G P + + + L + + ++
Sbjct: 442 MDLTLPLPVSMVWKHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGCFEI 499
Query: 572 LVAEIYRSKIFRVLDEPSD-LLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLG 630
V IY + +L+ LL I D + Y D+ V +H R E+
Sbjct: 500 KVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE-TNDNGI--EVPVVHLRIEKGYKSK 556
Query: 631 RLSLEWKIFGTPLVGRLSDLTNGS---DIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNG 687
RL FG P + +L+ L S + K F +LL M D D E ++
Sbjct: 557 RL------FGDPFL-QLNVLIKASIYDKLVKEFEELLVLVEMKK-TDVDLVSEQVRLLRE 608
Query: 688 DSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAK 747
+S + D R + + MN +
Sbjct: 609 ESSP-----------SSWLKLETEIDTK---------REEQVEEEGQ-MNFNDA------ 641
Query: 748 PLTIHVQWAEKMIEK---YDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLG 804
+ I +W EK YD + + +++L CL F K E LG
Sbjct: 642 -VVISCEWEEKRYLSLFSYDPLWTIREIGAAER---------TITLQDCLNEFSKPEQLG 691
Query: 805 PEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLS 864
D WYCP CK+ QASK+++LWR P IL+IHLKRFS R F+ K+D V++PIDDLDLS
Sbjct: 692 LSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLS 751
Query: 865 NYVCCK-NSQLSNRYVLYAISNHYGGMGGGHYTAFV-DLGHKRWFEFDDDRVYPVSEDNI 922
+ +L Y LYA+ NHYGG+ GGHYTA+ + + W+ FDD R+ V ++
Sbjct: 752 GVEYMVDDPRLI--YDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDS 809
Query: 923 KTSAAYVLFYKRVS 936
TS+AYVLFY+R S
Sbjct: 810 VTSSAYVLFYRRKS 823
|
Length = 823 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 939 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.97 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.97 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.94 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.72 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.67 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.5 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.46 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 98.08 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.83 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 96.66 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 96.45 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 96.41 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 96.22 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 96.14 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 96.08 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 96.06 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 96.0 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 95.99 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 95.99 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 95.98 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 95.88 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 95.75 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 95.63 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 95.63 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 95.56 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 95.55 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 95.54 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 95.47 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 95.4 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 95.33 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 95.26 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 95.23 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 94.52 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 94.4 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 94.36 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 94.35 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 93.12 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 92.45 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 91.88 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 91.75 | |
| cd01788 | 119 | ElonginB Ubiquitin-like domain of Elongin B. Elong | 91.61 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 91.04 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 89.68 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 89.54 | |
| cd01767 | 77 | UBX UBX (ubiquitin regulatory X) domain. The UBX ( | 85.3 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 85.27 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 84.72 | |
| cd01773 | 82 | Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i | 83.9 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-121 Score=1011.89 Aligned_cols=736 Identities=32% Similarity=0.505 Sum_probs=567.0
Q ss_pred EEEEEcchhHHHHHHhhccccCCccCCCCCCCCChhhhhhhhhcccCCCCCCCcCCCCccCCCeEEcCHHHHHHHHHHcC
Q 002303 96 KVYLVPYRWWKESQILLAEKVGGVLYEVLSNDDNTDLEILLHLKKKEGSVDSDCGEGGVSVREYALVPEGMWLRALKWHN 175 (939)
Q Consensus 96 ~~ylv~~~W~~~w~~~v~~~~~g~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~lk~~l~~~~Dy~~Vp~~~W~~l~~wYG 175 (939)
..|++++.|+...-++...++. .||||+--.|+ |-+...++..+.++.||.+|.+.+|+.|++|||
T Consensus 46 ~a~i~~y~wyeg~fd~~~~dg~-----~pgPi~q~~i~---------d~e~e~lk~sl~e~idysiis~~vw~llvrwyG 111 (823)
T COG5560 46 YAVIFAYAWYEGMFDRASCDGG-----SPGPIVQGPIV---------DFEPESLKKSLREGIDYSIISGAVWQLLVRWYG 111 (823)
T ss_pred eEEEEehHHhhhhcccccccCC-----CCCCCCccccc---------ccChhhcchhhhcCCCeeeechHHHHHHHHHhc
Confidence 8999999999998887765442 39999998888 446789999999999999999999999999999
Q ss_pred -CCcce-eeccCC-CCCCcceeeeeeEEEEeeecC---------CCeEEEEEccCCCHHHHHHHHHHHcCCCccceEEEe
Q 002303 176 -DSKAA-VKDFGS-SFAADEQDVFPLQIRLSVSQE---------TNSLLVKISLEDNKVDLYKRACNLFISVSEMLYIWD 243 (939)
Q Consensus 176 -g~p~i-vi~~~~-~~~~~~vEvYPl~l~l~~~~~---------~~~~~~~~Sk~~ti~eL~~~v~~lf~i~~e~~RLW~ 243 (939)
.|+.+ ++..+. +.....+|+||+.+++....+ .....+.+|...|+.++.+++..+|-+|.+++|||+
T Consensus 112 l~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~ 191 (823)
T COG5560 112 LAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191 (823)
T ss_pred ccccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEE
Confidence 34555 332222 334457999999999877543 134678999999999999999999999999999999
Q ss_pred ecCCccccccccccccccccc--cCCCc---------------eEEEEEe-ecCcccCCCCccccccccccccccccCCc
Q 002303 244 FSGQTTQFLMNDRVTMSDDFS--AKPGE---------------EVFLQLQ-VHGFSDSVGETNDEMAEHYKIIDSICNGS 305 (939)
Q Consensus 244 ~~~~~~~~lL~d~~~tL~d~~--l~~~q---------------~IllE~k-~dg~W~~~~~~~~~~~~~~~~~~~~~~~~ 305 (939)
+...+....+-+.+. ..+.. ...++ ..+++.. ..++|+...
T Consensus 192 v~~~~~~~r~~~~s~-f~~~~~~a~~~~~l~~~t~~el~~d~s~lll~kit~np~wlvds-------------------- 250 (823)
T COG5560 192 VVPEIMGLRLGLDSF-FRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPDWLVDS-------------------- 250 (823)
T ss_pred ecCCcccccccCHHH-HhhcchhccchhhhcccHHHHhccchhhhHHhhhccCCccceee--------------------
Confidence 875543322221111 11100 00111 1111111 223332210
Q ss_pred ccccCCCCCCCccccC-CCccccCCCCCCcccccccccccCCCcchHHHHHHHHhCChhHHHHHhh-hcccccccCCCCC
Q 002303 306 VKINGSNDNLNSYITS-SNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLG-DYQKEINYENPLG 383 (939)
Q Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~-~~~~~~~~~~~~~ 383 (939)
... ++... . ...|.|||.|+||||||||+||||.||+.||+||+. .|.+++|..||+|
T Consensus 251 -------------i~~~~n~si-----n--ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplg 310 (823)
T COG5560 251 -------------IVDDHNRSI-----N--KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLG 310 (823)
T ss_pred -------------ecchhhhhH-----H--hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccc
Confidence 000 00001 1 124999999999999999999999999999999996 4999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCccchHHHHHHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCC
Q 002303 384 LNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQ 463 (939)
Q Consensus 384 ~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~ 463 (939)
+.|.+|.+|+.|+++++.++..+++|+.|+..|+.++..|+||.|||+|||++||||+|||+|||+.+|||.+..|....
T Consensus 311 mhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~ 390 (823)
T COG5560 311 MHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPG 390 (823)
T ss_pred hhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875433
Q ss_pred C---hHHHHHHHHHhhhccCCCcccccccEEEEeEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCc
Q 002303 464 P---EEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPA 540 (939)
Q Consensus 464 ~---~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~ 540 (939)
. ....|+++|..|.+||+|+|+|+|+|.++||++|+.|+.+|++||||++|+||||.+..|..+|++||++|...|
T Consensus 391 d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p- 469 (823)
T COG5560 391 DDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP- 469 (823)
T ss_pred chHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc-
Confidence 3 356899999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred ceEEEecCCcchHHHHHHHhhhhccCCccceeeeEeecceeeeeccCCccc-cccccCCCcEEEEEcCCCCCCCceEEEe
Q 002303 541 PFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAEIYRSKIFRVLDEPSDL-LGLIRDEDKLVAYRLPKDSETPSLVLFM 619 (939)
Q Consensus 541 ~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-~~~i~~~d~i~~yel~~~~~~~~~~~~~ 619 (939)
..+++.+.+++.+|++.+....|+..-..+.++++|..++++.++..... +..|.+.|.+|.|+ ..++...++++
T Consensus 470 -l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvv 545 (823)
T COG5560 470 -LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVV 545 (823)
T ss_pred -eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEE
Confidence 67888899999999999988888776678999999999999999977764 47899999999999 44455789999
Q ss_pred eecccccccccccccceeeeccce-EEec-cCCCChhHHHHHHHHhcCCcc-CCCCCCCCcccccC--CCCCCCCccccc
Q 002303 620 HERKEESCHLGRLSLEWKIFGTPL-VGRL-SDLTNGSDIRKLFLKLLDPFL-MPVGDDSDFSDEAG--KIDNGDSIVEDV 694 (939)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~fg~P~-~~~~-~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 694 (939)
|.+.++. ..+..+||.|+ ...+ ..+.-.++|.+...+.+.... .+++.+.++.+... ......+..+
T Consensus 546 h~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~-- 617 (823)
T COG5560 546 HLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLK-- 617 (823)
T ss_pred ecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhh--
Confidence 9977764 45678999995 3344 333334444333333322111 11221111111000 0000000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhh
Q 002303 695 TSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEV 774 (939)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~ 774 (939)
+..+......+..+.+...+....+.|.|+|.+......+.. ..+.-.
T Consensus 618 ------------------------------l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy--~~lw~~ 665 (823)
T COG5560 618 ------------------------------LETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSY--DPLWTI 665 (823)
T ss_pred ------------------------------hhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcC--Cccchh
Confidence 000000000001111112233456788999999876532210 000000
Q ss_pred cccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCccccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceee
Q 002303 775 CKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYV 854 (939)
Q Consensus 775 ~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V 854 (939)
-+.+. ..+.+||+|||++|.++|+|+..|.||||.||++++|+|+|+||++|.|||||||||++.|.+++||++.|
T Consensus 666 ~ei~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlV 741 (823)
T COG5560 666 REIGA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLV 741 (823)
T ss_pred HHhhh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhh
Confidence 00111 13689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCCeEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEE
Q 002303 855 DFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGGHYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYK 933 (939)
Q Consensus 855 ~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~ 933 (939)
+|||.+|||+.|+....+ ....|+||||.||||++||||||||+|+ .+++||+|||++|++|.+++.++++||||||+
T Consensus 742 eyPiddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyr 820 (823)
T COG5560 742 EYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYR 820 (823)
T ss_pred ccccccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEE
Confidence 999999999999887755 4599999999999999999999999999 77899999999999999999999999999999
Q ss_pred Eec
Q 002303 934 RVS 936 (939)
Q Consensus 934 R~~ 936 (939)
|+.
T Consensus 821 rk~ 823 (823)
T COG5560 821 RKS 823 (823)
T ss_pred ecC
Confidence 974
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01788 ElonginB Ubiquitin-like domain of Elongin B | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01767 UBX UBX (ubiquitin regulatory X) domain | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 939 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 5e-57 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-41 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-36 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 5e-31 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 2e-34 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 9e-31 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 2e-29 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 2e-23 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 2e-29 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 2e-23 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 3e-29 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 4e-23 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 2e-28 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 2e-23 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 1e-24 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 1e-24 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 1e-24 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 4e-16 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 4e-16 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 4e-16 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 7e-04 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 9e-04 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 3e-89
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 1/211 (0%)
Query: 320 TSSNSVRRGSGNGGVCLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFL-GDYQKEINY 378
S++ +R + G LTGLRNLGNTC+MNS +QCL + P + DYF YQ +IN
Sbjct: 43 LSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINR 102
Query: 379 ENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFL 438
N LG GE+A FG +++ LW ++P+ FK+ + QF+GY+Q DSQE L FL
Sbjct: 103 SNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFL 162
Query: 439 LDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVC 498
+DGLHEDLN+ + + ++ + + + AE W+ H+ N+SIIV L QGQ++S + C
Sbjct: 163 MDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQC 222
Query: 499 PVCNKVSVTFDPLMYLSLPIPSTTMRTMTVT 529
C+K S TF+ MYLSLP+ ST+ T+
Sbjct: 223 LTCHKKSRTFEAFMYLSLPLASTSKCTLQDC 253
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 939 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 100.0 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.93 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 99.78 | |
| 2ylm_A | 530 | Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 | 99.31 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 96.6 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 96.54 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 96.36 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 96.33 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 96.32 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 96.28 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 96.27 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 96.27 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 96.24 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 96.23 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 96.21 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 96.2 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 96.19 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 96.13 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 96.11 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 96.09 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 96.09 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 96.08 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 96.06 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 96.05 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 96.04 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 96.0 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 95.99 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 95.95 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 95.9 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 95.86 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 95.86 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 95.85 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 95.82 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 95.74 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 95.74 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 95.73 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 95.69 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 95.63 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 95.54 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 95.53 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 95.5 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 95.49 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 95.46 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 95.46 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 95.45 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 95.43 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 95.43 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 95.42 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 95.38 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 95.28 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 95.25 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 95.19 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 95.11 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 95.1 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 95.09 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 95.07 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 95.04 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 95.0 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 94.93 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 94.77 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 94.72 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 94.69 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 94.64 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 94.62 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 94.6 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 94.6 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 94.44 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 94.42 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 94.31 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 94.12 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 94.12 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 94.11 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 93.98 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 93.83 | |
| 3qx1_A | 84 | FAS-associated factor 1; UBX, protein binding, P97 | 93.01 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 92.97 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 92.75 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 92.59 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 92.57 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 92.39 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 92.34 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 92.01 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 91.74 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 90.82 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 91.24 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 91.2 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 91.05 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 90.9 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 90.66 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 90.22 | |
| 3u5c_f | 152 | 40S ribosomal protein S31; translation, ribosome, | 89.85 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 89.77 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 89.65 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 89.21 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 89.15 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 88.74 | |
| 1wj4_A | 124 | KIAA0794 protein; UBX domain, beta-grAsp fold, str | 88.52 | |
| 2dzk_A | 109 | UBX domain-containing protein 2; ubiquitin-like fo | 88.43 | |
| 1wgh_A | 116 | Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo | 87.28 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 87.1 | |
| 2dzj_A | 88 | Synaptic glycoprotein SC2; ubiquitin-like fold, st | 86.84 | |
| 2gow_A | 125 | HCG-1 protein, ubiquitin-like protein 3; BC059385, | 86.8 | |
| 2cr5_A | 109 | Reproduction 8; UBX domain, D0H8S2298E protein, st | 86.25 | |
| 3pge_A | 200 | SUMO-modified proliferating cell nuclear antigen; | 84.05 | |
| 1oqy_A | 368 | HHR23A, UV excision repair protein RAD23 homolog A | 83.68 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-77 Score=680.79 Aligned_cols=355 Identities=57% Similarity=1.004 Sum_probs=319.0
Q ss_pred ccccccccccCCCcchHHHHHHHHhCChhHHHHHhhh-cccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHH
Q 002303 335 CLLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFK 413 (939)
Q Consensus 335 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~ 413 (939)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..++.+..+.++.+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999964 666777788888889999999999999999988899999999
Q ss_pred HHHhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEE
Q 002303 414 LKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYR 493 (939)
Q Consensus 414 ~~l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~ 493 (939)
.++++..|+|.+++||||||||.+|||.||++++++.++|+.+..+.++.++.+.|.++|..+..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceee
Q 002303 494 SMLVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLV 573 (939)
Q Consensus 494 s~i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~ 573 (939)
++++|..|+++|.++|+|++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999975321100000
Q ss_pred eEeecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCCh
Q 002303 574 AEIYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNG 653 (939)
Q Consensus 574 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 653 (939)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcc
Q 002303 654 SDIRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTE 733 (939)
Q Consensus 654 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (939)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcc
Q 002303 734 IKMNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPR 813 (939)
Q Consensus 734 ~~~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~ 813 (939)
|.+.. .....++|++||+.|+++|.|+++|.|+|++
T Consensus 201 ---------------------~~~~~-----------------------~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~ 236 (367)
T 2y6e_A 201 ---------------------LQPQK-----------------------KKKTTVALRDCIELFTTMETLGEHDPWYCPN 236 (367)
T ss_dssp -----------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETT
T ss_pred ---------------------ecccc-----------------------ccCCCCCHHHHHHHhcccccCCCCCCccCCC
Confidence 00000 0003469999999999999999999999999
Q ss_pred ccCcceeEEEEEeeeCCCeEEEEEeeeEeccccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCC
Q 002303 814 CKKHWQASKKLDLWRSPDILVIHLKRFSFSRYFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (939)
Q Consensus 814 Ck~~~~AtKk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (939)
|++++.|+|++.|+++|+|||||||||.|+++.+.|+++.|.||++.|||++|+..+.. .+..|+|+|||+|+|++++|
T Consensus 237 C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~G 315 (367)
T 2y6e_A 237 CKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAMGVG 315 (367)
T ss_dssp TTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSSSSC
T ss_pred CCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeecCCCCCCC
Confidence 99999999999999999999999999999988889999999999778999999987654 67899999999999999999
Q ss_pred eEEEEEEe-CCCCEEEEcCCcceecCccccCCCceEEEEEEEecC
Q 002303 894 HYTAFVDL-GHKRWFEFDDDRVYPVSEDNIKTSAAYVLFYKRVSD 937 (939)
Q Consensus 894 HYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~s~~AYvLFY~R~~~ 937 (939)
||+||+|+ .+++||.|||+.|+++++++|.+.+||||||+|++.
T Consensus 316 HY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 316 HYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp EEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred eeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence 99999998 478999999999999999999999999999999874
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A | Back alignment and structure |
|---|
| >1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 939 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-43 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 3e-35 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 9e-38 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 6e-34 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 1e-34 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-19 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-19 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 7e-20 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-17 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (400), Expect = 3e-43
Identities = 87/190 (45%), Positives = 124/190 (65%), Gaps = 1/190 (0%)
Query: 338 GLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGD-YQKEINYENPLGLNGELALAFGDLL 396
LTGLRNLGNTC+MNS +QCL + P + DYF + YQ +IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 397 RKLWAPGGIPVAPRMFKLKLANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLE 456
+ LW ++P+ FK+ + QF+GY+Q DSQE L FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 457 AKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSMLVCPVCNKVSVTFDPLMYLSL 516
++ + + + AE W+ H+ N+SIIV L QGQ++S + C C+K S TF+ MYLSL
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 517 PIPSTTMRTM 526
P+ ST+ T+
Sbjct: 194 PLASTSKCTL 203
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 939 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.76 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 96.68 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 96.59 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 96.58 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.47 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 96.41 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 96.29 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 96.28 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 96.12 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 96.11 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 96.1 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 96.09 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 96.02 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 96.02 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 96.02 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 95.99 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 95.91 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 95.88 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 95.82 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 95.8 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 95.8 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 95.69 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 95.58 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 95.53 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 95.26 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 95.18 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 95.12 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 94.89 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 94.71 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 94.66 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 94.45 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 94.21 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 94.18 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 93.48 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 93.46 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 89.6 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 88.73 | |
| d2cr5a1 | 96 | UBX domain-containing protein 6 (Reproduction 8) { | 87.52 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 84.95 | |
| d1i42a_ | 89 | p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.97 | |
| d1wxma1 | 73 | A-Raf proto-oncogene serine/threonine-protein kina | 83.4 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 82.95 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-57 Score=509.89 Aligned_cols=296 Identities=24% Similarity=0.405 Sum_probs=255.3
Q ss_pred cccccccccCCCcchHHHHHHHHhCChhHHHHHhhhcccccccCCCCCCchHHHHHHHHHHHHhcCCCCCccchHHHHHH
Q 002303 336 LLGLTGLRNLGNTCFMNSAIQCLAHTPEIVDYFLGDYQKEINYENPLGLNGELALAFGDLLRKLWAPGGIPVAPRMFKLK 415 (939)
Q Consensus 336 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~ll~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~f~~~ 415 (939)
.+|++||.|+||||||||+||||+++|+|+++++..-.. ......++..+|+.||..|+.+. .++.|..+...
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~ 75 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc------CCcccchHHHHHHHHHHHHhcCC-CCcChHHHHHh
Confidence 479999999999999999999999999999998743211 11223568889999999998765 57889988887
Q ss_pred HhhcCCccCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHhhhccCCCcccccccEEEEeE
Q 002303 416 LANFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYLEAKDAEGQPEEEVAEEYWRNHRARNDSIIVDLCQGQYRSM 495 (939)
Q Consensus 416 l~~~~p~F~~~~QQDA~EfL~~LLd~L~eel~~~~~k~~~e~~d~~~~~~~~~a~e~w~~~~~~~~SiI~~lF~G~~~s~ 495 (939)
++ .+.|.++.|||||||+..||+.|++++.... ..++|.++|+|.+.++
T Consensus 76 ~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------------------------~~~~i~~lF~g~~~~~ 124 (347)
T d1nbfa_ 76 FG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------------------VEGTIPKLFRGKMVSY 124 (347)
T ss_dssp TT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------------------------TTTHHHHHHCEEEEEE
T ss_pred hc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------ccccccceeceEEEEe
Confidence 75 3568899999999999999999999885421 2467999999999999
Q ss_pred EecCCCCCeeeeecCCeeEEeeCCCCCccceEEEEEccCCCCCCcceEEEecCCcchHHHHHHHhhhhccCCccceeeeE
Q 002303 496 LVCPVCNKVSVTFDPLMYLSLPIPSTTMRTMTVTVLSTDGSTMPAPFTVTVPKYGRFQDLIDALSTKCFLRNHEKLLVAE 575 (939)
Q Consensus 496 i~C~~C~~~s~~~e~F~~LsL~iP~~~~~~~~v~~~~~d~~~~p~~~~v~v~k~~~~~dl~~~l~~~~~~~~~~~l~~~e 575 (939)
++|..|++.+.++|+|+.|+|++|..
T Consensus 125 ~~C~~C~~~s~~~e~f~~l~L~i~~~------------------------------------------------------ 150 (347)
T d1nbfa_ 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (347)
T ss_dssp EEESSSCCEEEEEEEESSEEEECTTC------------------------------------------------------
T ss_pred EEeCCccceeeeeccccccccccccc------------------------------------------------------
Confidence 99999999999999999999988631
Q ss_pred eecceeeeeccCCccccccccCCCcEEEEEcCCCCCCCceEEEeeecccccccccccccceeeeccceEEeccCCCChhH
Q 002303 576 IYRSKIFRVLDEPSDLLGLIRDEDKLVAYRLPKDSETPSLVLFMHERKEESCHLGRLSLEWKIFGTPLVGRLSDLTNGSD 655 (939)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~yel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 655 (939)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCccCCCCCCCCcccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002303 656 IRKLFLKLLDPFLMPVGDDSDFSDEAGKIDNGDSIVEDVTSSRVSDNDAVSDSSEAGDEPHLSDDFQFYRLDSIRPTEIK 735 (939)
Q Consensus 656 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (939)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcCCCCCceEEEEecChhhHHhhhhhhhcchhhhcccccccCCCCCCcCHHHHHHHhhCcccCCCCCCCCCcccc
Q 002303 736 MNEPLSISDFAKPLTIHVQWAEKMIEKYDTCLLSSLMEVCKPQLFTRMPPESVSLYKCLEAFLKEEPLGPEDMWYCPRCK 815 (939)
Q Consensus 736 ~~~~~~~~~~~~~~~i~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dCL~~F~~~E~L~~~d~w~C~~Ck 815 (939)
.++.+||+.++.+|.|.+++.|.|..|
T Consensus 151 ----------------------------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~- 177 (347)
T d1nbfa_ 151 ----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH- 177 (347)
T ss_dssp ----------------------------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT-
T ss_pred ----------------------------------------------------cchhhhHHhhcchheeccccccccccC-
Confidence 156789999999999998887777766
Q ss_pred CcceeEEEEEeeeCCCeEEEEEeeeEecc--ccccccceeeecCCCCCCCCCcccccCCCCCceEEEEEEEEeeccCCCC
Q 002303 816 KHWQASKKLDLWRSPDILVIHLKRFSFSR--YFKSKLDTYVDFPIDDLDLSNYVCCKNSQLSNRYVLYAISNHYGGMGGG 893 (939)
Q Consensus 816 ~~~~AtKk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~AVinH~G~l~gG 893 (939)
+.+.|.|++.|+++|+||+||||||.|.. ..+.|+++.|.|| +.|||++|+..........|+|+|||+|.|...+|
T Consensus 178 ~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~G 256 (347)
T d1nbfa_ 178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGG 256 (347)
T ss_dssp CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEE
T ss_pred cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeee-eeeccccccccccccCccceeeEEEEEecCCCCCC
Confidence 56789999999999999999999999874 4567999999999 69999999988776678899999999999988999
Q ss_pred eEEEEEEe-CCCCEEEEcCCcceecCccccC---------------CCceEEEEEEEecC
Q 002303 894 HYTAFVDL-GHKRWFEFDDDRVYPVSEDNIK---------------TSAAYVLFYKRVSD 937 (939)
Q Consensus 894 HYtAy~k~-~~~~Wy~fnDs~Vs~vs~~~v~---------------s~~AYvLFY~R~~~ 937 (939)
||+||+|+ .+++||.|||+.|++|++++|. +.+||||||+|++.
T Consensus 257 HY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~ 316 (347)
T d1nbfa_ 257 HYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (347)
T ss_dssp EEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred EEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCc
Confidence 99999997 5789999999999999999985 24699999999863
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| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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