Citrus Sinensis ID: 002350

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930---
Protein Sequence
METSFVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccEEcccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEEccccccccccccccHHHHcccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHccccccEEEEEEEEccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccHHHHccccccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccccHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEEccccccccccHHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHHHHHccEEEcccccccccccHHHccccccEEEEccccccccccccHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHHHcccccccccccHHHcccccEEEEEcccccccccccccccccHHHHccccccccccccccccccccHHHHccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEEHHHEcc
Coil and Loop (DISEMBL)
METSFVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFisasdieykdsilsswvddddddgmpsdcchwqrvkcnattgRVMQLSLKnttrlnypydwfpllnmslfhpleelqsldlsvniftyDSKVAAYDSLRSLKQLKILVLghnyfddsiFSYLNTLPSLCTLILhwnriegsqtnqGICELKNLFEMNlernfigspliTCLKNltrlkildissnqlngslpsvISNLTsleyldlshnnfegmfplsslanhsKLEGLLLSTrnntlhvktenwlpTSQLIVLGLtkcnlngsypdfllHQYHLKYLdlshnklvgnfptwllrnnpklEVLLLKNnsfsgilqlpkakhdflhhldiscnnfrgklphNMGVILQKLMYMDISkncfegnipysagemkELSLLDLSrnyfsgglsqsvVTGCFSLELldlsnnnfegqffsEYMNLTRLRHLYfennnfsgkikdgllsstslQVLDISnnmlsghiphwmgnfSSELEILSMSKnhlegnvpvqlnnlerlrildisenrlsgpiasslnlssVEHLSLQKnalnglipgelfrSCKLVtlnlrdntfsgriphqinehSNLRFLLLggnhlqgpipdqLCQLQKLAMMDlsrnkfsgsippcfanvlswrvgsddvlngsklnspeldeeiefgslgnnrssntMFGMWRWLSALEKRAAIDERVEIEFAMKNRYeiyngsnvnrvtgldlscnqltgeipsdiGQLQAILALNLsnnslsgsipesfsnlkMIESLDISynkltgqippqltaLNFLSIFNVSynnlsgrtpdkgqfatfdessyrgnpsLCAWLIQQKYsrtlkptttqasgaeeeeeeedddesaIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Flexible Loop (DISEMBL)
metsfvrlSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIefgslgnnrssNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYsrtlkptttqasgaeeeeeeedddesaIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Low Complexity Region (SEG)
METSFVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKdsilsswvddddddgmpsdCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAlnlsnnslsGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAeeeeeeedddeSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Disordered region (IsUnstruct)
****FVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL*************************NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL***IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR*****QFATFDESSYRGNPSLCAWLIQQKY***************************IDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLC*
Disordered Region (DISOPRED)
****FVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQ****************************AIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Disordered Region (DISEMBL)
METSFVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL**********************AIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Disordered Region (DISPRO)
*ETSFVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKY***********************DESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METSFVRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSKYVLCR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	933	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.803	0.885	0.292	2e-71
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.764	0.590	0.324	5e-69
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.764	0.590	0.324	5e-69
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.822	0.614	0.295	3e-68
Q9FL28	1173	LRR receptor-like serine/	no	no	0.677	0.538	0.308	4e-66
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.651	0.521	0.319	3e-62
Q9LJF3	1164	Receptor-like protein kin	no	no	0.653	0.524	0.322	3e-59
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.653	0.560	0.314	5e-59
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.660	0.515	0.313	1e-57
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.688	0.512	0.288	1e-57

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  271 bits (692), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 259/886 (29%), Positives = 405/886 (45%), Gaps = 136/886 (15%)

Query: 12  VIMITVLMNEMHGYKA--CLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMP 69
           +I +++L++ +       C + +R ALL+ +  F     I     I++ W    +     
Sbjct: 16  IIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEF----PINASWHIMNQWRGPWNKS--- 68

Query: 70  SDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLS---- 125
           +DCC W  V CN  +G+V+ L + NT   NY        N SLF  L+ L+ LDL+    
Sbjct: 69  TDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKT-----NSSLFK-LQYLRHLDLTNCNL 122

Query: 126 ----------------VNIF--TYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNT 167
                           VN++   +  ++ A  S+ +L QL+ L+L +N     I S L  
Sbjct: 123 YGEIPSSLGNLSHLTLVNLYFNKFVGEIPA--SIGNLNQLRHLILANNVLTGEIPSSLGN 180

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISS 227
           L  L  L L  NR+ G +    I +LK L  ++L  N +   + + L NL+ L  L ++ 
Sbjct: 181 LSRLVNLELFSNRLVG-KIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTH 239

Query: 228 NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTEN 287
           NQL G +P+ I NL  L  +   +N+  G  P+S  AN +KL   +LS+ N T       
Sbjct: 240 NQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS-FANLTKLSIFVLSSNNFT------- 291

Query: 288 WLPTSQLIVLGLTKCNLNGSYPDFLLHQYH-LKYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
                              ++P F +  +H L+Y D+S+N   G FP  LL   P LE +
Sbjct: 292 ------------------STFP-FDMSIFHNLEYFDVSYNSFSGPFPKSLLLI-PSLESI 331

Query: 347 LLKNNSFSGILQLPKAKHDF-LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 405
            L+ N F+G ++         L  L +  N   G +P ++  +L  L  +DIS N F G 
Sbjct: 332 YLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLN-LEELDISHNNFTGA 390

Query: 406 IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC-FSLELLDLSNNNFEGQFFSEYMNLTR 464
           IP +  ++  L  LDLS+N   G      V  C + L  + LS+N+F   F +       
Sbjct: 391 IPPTISKLVNLLHLDLSKNNLEGE-----VPACLWRLNTMVLSHNSFS-SFENTSQEEAL 444

Query: 465 LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 524
           +  L   +N+F G I   +   +SL  LD+SNN+ SG IP  + NFS  ++ L++  N+ 
Sbjct: 445 IEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNF 504

Query: 525 EGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC 583
            G +P   +    L  LD+S N+L G    SL N  ++E ++++ N +  + P  L    
Sbjct: 505 SGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLP 564

Query: 584 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643
            L  LNLR N F G + H+   H+++ F                   Q L ++D+S N F
Sbjct: 565 SLHVLNLRSNKFYGPLYHR---HASIGF-------------------QSLRIIDISHNNF 602

Query: 644 SGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL-SA 702
           SG++PP + +  +W+            +   L EE++            M   WR+  S 
Sbjct: 603 SGTLPPYYFS--NWK------------DMTTLTEEMD----------QYMTEFWRYADSY 638

Query: 703 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALN 762
             +   +++ V++ F    R              +D S N++ G IP  +G L+ +  LN
Sbjct: 639 YHEMEMVNKGVDMSFERIRR----------DFRAIDFSGNKINGNIPESLGYLKELRVLN 688

Query: 763 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
           LS N+ +  IP   +NL  +E+LDIS NKL+GQIP  L AL+FLS  N S+N L G  P 
Sbjct: 689 LSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPR 748

Query: 823 KGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEE 868
             QF     SS+  NP L       + +  L PT+       E EE
Sbjct: 749 GTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEE 794

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  263 bits (672), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 244/751 (32%), Positives = 363/751 (48%), Gaps = 38/751 (5%)

Query: 161 IFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK-NLFEMNLERNFIGSPL--ITCLKNL 217
           + SYL  L +L +L+L    + GS T+    +    L  ++L  N I  P+  I+     
Sbjct: 100 VTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVC 159

Query: 218 TRLKILDISSNQLNGSLPSVISNLT-SLEYLDLSHNNFEG--MFPLSSLANHSKLEGLLL 274
           + LK L++S N L+     ++   T SL+ LDLS+NN  G  +FP  S     +LE    
Sbjct: 160 SNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELE--FF 217

Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 334
           S + N L       L    L  L L+  N +  +P F     +L++LDLS NK  G+  +
Sbjct: 218 SIKGNKLAGSIPE-LDFKNLSYLDLSANNFSTVFPSFK-DCSNLQHLDLSSNKFYGDIGS 275

Query: 335 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
            L  +  KL  L L NN F G++  PK   + L +L +  N+F+G  P+ +  + + ++ 
Sbjct: 276 SL-SSCGKLSFLNLTNNQFVGLV--PKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVE 332

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
           +D+S N F G +P S GE   L L+D+S N FSG L    +    +++ + LS N F G 
Sbjct: 333 LDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGG 392

Query: 455 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNNMLSGHIPHWMGNFSS 512
               + NL +L  L   +NN +G I  G+      +L+VL + NN+  G IP  + N  S
Sbjct: 393 LPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSN-CS 451

Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNAL 571
           +L  L +S N+L G++P  L +L +L+ L +  N+LSG I   L  L ++E+L L  N L
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 631
            G IP  L    KL  ++L +N  SG IP  +   SNL  L LG N + G IP +L   Q
Sbjct: 512 TGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 632 KLAMMDLSRNKFSGSI-PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS 690
            L  +DL+ N  +GSI PP F    +  V    +L G +    + D   E    GN    
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQSGNIAVA---LLTGKRYVYIKNDGSKECHGAGNLLE- 627

Query: 691 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN-RVTGLDLSCNQLTGEIP 749
              FG  R     E+   I  R    F    R       N N  +  LDLS N+L G IP
Sbjct: 628 ---FGGIRQ----EQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIP 680

Query: 750 SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF 809
            ++G +  +  LNL +N LSG IP+    LK +  LD+SYN+  G IP  LT+L  L   
Sbjct: 681 KELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEI 740

Query: 810 NVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEE 869
           ++S NNLSG  P+   F TF +  +  N SLC + +    S   K    Q   +   +  
Sbjct: 741 DLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPLPCSSGPKSDANQHQKSHRRQAS 799

Query: 870 EDDDESAIDMVTLYSSFGASYVTVILVLIAI 900
                +   + +L+  FG       L+++AI
Sbjct: 800 LAGSVAMGLLFSLFCIFG-------LIIVAI 823

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  263 bits (672), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 244/751 (32%), Positives = 364/751 (48%), Gaps = 38/751 (5%)

Query: 161 IFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK-NLFEMNLERNFIGSPL--ITCLKNL 217
           + SYL  L +L +L+L    + GS T+    +    L  ++L  N I  P+  I+     
Sbjct: 100 VTSYLLPLSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVC 159

Query: 218 TRLKILDISSNQLNGSLPSVISNLT-SLEYLDLSHNNFEG--MFPLSSLANHSKLEGLLL 274
           + LK L++S N L+     ++   T SL+ LDLS+NN  G  +FP  S     +LE    
Sbjct: 160 SNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELE--FF 217

Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 334
           S + N L       L    L  L L+  N +  +P F     +L++LDLS NK  G+  +
Sbjct: 218 SLKGNKLAGSIPE-LDFKNLSYLDLSANNFSTVFPSFK-DCSNLQHLDLSSNKFYGDIGS 275

Query: 335 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
            L  +  KL  L L NN F G++  PK   + L +L +  N+F+G  P+ +  + + ++ 
Sbjct: 276 SL-SSCGKLSFLNLTNNQFVGLV--PKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVE 332

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
           +D+S N F G +P S GE   L L+D+S N FSG L    ++   +++ + LS N F G 
Sbjct: 333 LDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGG 392

Query: 455 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNNMLSGHIPHWMGNFSS 512
               + NL +L  L   +NN +G I  G+      +L+VL + NN+  G IP  + N  S
Sbjct: 393 LPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSN-CS 451

Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNAL 571
           +L  L +S N+L G++P  L +L +L+ L +  N+LSG I   L  L ++E+L L  N L
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 631
            G IP  L    KL  ++L +N  SG IP  +   SNL  L LG N + G IP +L   Q
Sbjct: 512 TGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 632 KLAMMDLSRNKFSGSI-PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS 690
            L  +DL+ N  +GSI PP F    +  V    +L G +    + D   E    GN    
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQSGNIAVA---LLTGKRYVYIKNDGSKECHGAGNLLE- 627

Query: 691 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN-RVTGLDLSCNQLTGEIP 749
              FG  R     E+   I  R    F    R       N N  +  LDLS N+L G IP
Sbjct: 628 ---FGGIRQ----EQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIP 680

Query: 750 SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF 809
            ++G +  +  LNL +N LSG IP+    LK +  LD+SYN+  G IP  LT+L  L   
Sbjct: 681 KELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEI 740

Query: 810 NVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEE 869
           ++S NNLSG  P+   F TF +  +  N SLC + +    S   K    Q   +   +  
Sbjct: 741 DLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPIPCSSGPKSDANQHQKSHRRQAS 799

Query: 870 EDDDESAIDMVTLYSSFGASYVTVILVLIAI 900
                +   + +L+  FG       L+++AI
Sbjct: 800 LAGSVAMGLLFSLFCIFG-------LIIVAI 823

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  261 bits (666), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 251/849 (29%), Positives = 387/849 (45%), Gaps = 82/849 (9%)

Query: 49  IEYKDSILSSWVDDDDDDGMPSD---CCHWQRVKCNATT-GRVMQLSLKNTTRLNYPYDW 104
           +E K S++++  +DD      SD    C W  V C+ T   RV+ L+L           W
Sbjct: 31  LEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW 90

Query: 105 FPLLNMSLFH--------------PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKIL 150
           F   + +L H               L  L SL+ S+ +F+          L SL  ++ L
Sbjct: 91  FGRFD-NLIHLDLSSNNLVGPIPTALSNLTSLE-SLFLFSNQLTGEIPSQLGSLVNIRSL 148

Query: 151 VLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL 210
            +G N     I   L  L +L  L L   R+ G   +Q +  L  +  + L+ N++  P+
Sbjct: 149 RIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLEGPI 207

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
              L N + L +   + N LNG++P+ +  L +LE L+L++N+  G  P S L   S+L+
Sbjct: 208 PAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP-SQLGEMSQLQ 266

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
            L L   N    +  ++      L  L L+  NL G  P+   +   L  L L++N L G
Sbjct: 267 YLSLMA-NQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSG 325

Query: 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM----- 385
           + P  +  NN  LE L+L     SG + +  +K   L  LD+S N+  G +P  +     
Sbjct: 326 SLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVE 385

Query: 386 ------------GVI------LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS 427
                       G +      L  L ++ +  N  EG +P     +++L +L L  N FS
Sbjct: 386 LTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFS 445

Query: 428 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 487
           G + Q +   C SL+++D+  N+FEG+       L  L  L+   N   G +   L +  
Sbjct: 446 GEIPQEI-GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCH 504

Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
            L +LD+++N LSG IP   G F   LE L +  N L+GN+P  L +L  L  +++S NR
Sbjct: 505 QLNILDLADNQLSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query: 548 LSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS 607
           L+G I      SS     +  N     IP EL  S  L  L L  N  +G+IP  + +  
Sbjct: 564 LNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIR 623

Query: 608 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 667
            L  L +  N L G IP QL   +KL  +DL+ N  SG IPP       W +G    L  
Sbjct: 624 ELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP-------W-LGKLSQLGE 675

Query: 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 727
            KL+S +  E +             +F   + L       +++  +  E        + N
Sbjct: 676 LKLSSNQFVESL----------PTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLN 725

Query: 728 -------GS------NVNRVTGLDLSCNQLTGEIPSDIGQLQAIL-ALNLSNNSLSGSIP 773
                  GS       ++++  L LS N LTGEIP +IGQLQ +  AL+LS N+ +G IP
Sbjct: 726 LDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIP 785

Query: 774 ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESS 833
            +   L  +E+LD+S+N+LTG++P  +  +  L   NVS+NNL G+   K QF+ +   S
Sbjct: 786 STIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADS 843

Query: 834 YRGNPSLCA 842
           + GN  LC 
Sbjct: 844 FLGNTGLCG 852

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  253 bits (647), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 229/743 (30%), Positives = 349/743 (46%), Gaps = 111/743 (14%)

Query: 201 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL 260
           LE+   G  L   + NLT L++LD++SN   G +P+ I  LT L  L L  N F G  P 
Sbjct: 80  LEKQLEGV-LSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIP- 137

Query: 261 SSLANHSKLEGLL-LSTRNNTLHVKT-ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 318
              +   +L+ +  L  RNN L     E    TS L+++G    NL G  P+ L    HL
Sbjct: 138 ---SGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHL 194

Query: 319 KY------------------------LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 354
           +                         LDLS N+L G  P     N   L+ L+L  N   
Sbjct: 195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF-GNLLNLQSLVLTENLLE 253

Query: 355 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMK 414
           G +         L  L++  N   GK+P  +G ++Q L  + I KN    +IP S   + 
Sbjct: 254 GDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQ-LQALRIYKNKLTSSIPSSLFRLT 312

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEGQFFSEYMNL----------- 462
           +L+ L LS N+  G +S+ +  G   SLE+L L +NNF G+F     NL           
Sbjct: 313 QLTHLGLSENHLVGPISEEI--GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFN 370

Query: 463 -------------TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
                        T LR+L   +N  +G I   + + T L++LD+S+N ++G IP   G 
Sbjct: 371 NISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGR 430

Query: 510 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN-LSSVEHLSLQK 568
            +  L  +S+ +NH  G +P  + N   L  L +++N L+G +   +  L  +  L +  
Sbjct: 431 MN--LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSY 488

Query: 569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628
           N+L G IP E+     L  L L  N F+GRIP +++  + L+ L +  N L+GPIP+++ 
Sbjct: 489 NSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMF 548

Query: 629 QLQKLAMMDLSRNKFSGSIPPCFANV--LSWRVGSDDVLNGSK---------LNSPELDE 677
            ++ L+++DLS NKFSG IP  F+ +  L++     +  NGS          LN+ ++ +
Sbjct: 549 DMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISD 608

Query: 678 EIEFGSLGN-------------NRSSNTMFG-MWRWLSALEKRAAIDERVEIEFAMKNRY 723
            +  G++               N S+N + G + + L  LE    ID        + N  
Sbjct: 609 NLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEID--------LSNN- 659

Query: 724 EIYNGS------NVNRVTGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPESF 776
            +++GS          V  LD S N L+G IP ++ Q +  I++LNLS NS SG IP+SF
Sbjct: 660 -LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSF 718

Query: 777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRG 836
            N+  + SLD+S N LTG+IP  L  L+ L    ++ NNL G  P+ G F   + S   G
Sbjct: 719 GNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMG 778

Query: 837 NPSLCAWLIQQKYSRTLKPTTTQ 859
           N  LC         + LKP T +
Sbjct: 779 NTDLCG------SKKPLKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  241 bits (614), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 211/660 (31%), Positives = 319/660 (48%), Gaps = 52/660 (7%)

Query: 244 LEYLDLSHNNFEGMFPLSSLANH--SKLEGLLLSTRNNTLHVKTENWLPTS--QLIVLGL 299
           L+ LDLS N+        S+ ++  SK   L+    +N   V    + P+S   L  + L
Sbjct: 127 LQVLDLSSNSISDY----SMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDL 182

Query: 300 TKCNLNGSYPDFLLHQY--HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG-- 355
           +   L+   P+  +  +   LKYLDL+HN L G+F          L    L  N+ SG  
Sbjct: 183 SYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK 242

Query: 356 -ILQLPKAKHDFLHHLDISCNNFRGKLPHN-MGVILQKLMYMDISKNCFEGNIPYSAGEM 413
             + LP  K  FL  L+IS NN  GK+P+       Q L  + ++ N   G IP     +
Sbjct: 243 FPITLPNCK--FLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLL 300

Query: 414 -KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN-LTRLRHLYFE 471
            K L +LDLS N FSG L  S  T C  L+ L+L NN   G F +  ++ +T + +LY  
Sbjct: 301 CKTLVILDLSGNTFSGEL-PSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVA 359

Query: 472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE--LEILSMSKNHLEGNVP 529
            NN SG +   L + ++L+VLD+S+N  +G++P    +  S   LE + ++ N+L G VP
Sbjct: 360 YNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVP 419

Query: 530 VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP-GELFRSCKLVT 587
           ++L   + L+ +D+S N L+GPI   +  L ++  L +  N L G IP G   +   L T
Sbjct: 420 MELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLET 479

Query: 588 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647
           L L +N  +G IP  I+  +N+ ++ L  N L G IP  +  L KLA++ L  N  SG++
Sbjct: 480 LILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV 539

Query: 648 PPCFANVLS--WRVGSDDVLNGSKLNSPELDEEI--EFGSLGNNRSSNTMFGMWRWLSAL 703
           P    N  S  W   + + L G      +L  E+  + G +     S   F   R     
Sbjct: 540 PRQLGNCKSLIWLDLNSNNLTG------DLPGELASQAGLVMPGSVSGKQFAFVRNEGGT 593

Query: 704 EKRAAIDERVEIEFAMKNRYE------------IYNGSNVNRVTG------LDLSCNQLT 745
           + R A    VE E     R E            IY+G  +   +        D+S N ++
Sbjct: 594 DCRGA-GGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVS 652

Query: 746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 805
           G IP   G +  +  LNL +N ++G+IP+SF  LK I  LD+S+N L G +P  L +L+F
Sbjct: 653 GFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSF 712

Query: 806 LSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEE 865
           LS  +VS NNL+G  P  GQ  TF  S Y  N  LC   ++   S   +P T++    ++
Sbjct: 713 LSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPITSRIHAKKQ 772

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  230 bits (587), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 327/672 (48%), Gaps = 62/672 (9%)

Query: 220 LKILDISSNQLNGS--LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
           L++LD+SSN L  S  +  V S   +L  ++ SHN   G    S  A++ ++  + LS  
Sbjct: 126 LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLS-- 183

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
           NN    +  + +P + +             +P+       LK+LDLS N + G+F     
Sbjct: 184 NN----RFSDEIPETFI-----------ADFPN------SLKHLDLSGNNVTGDFSRLSF 222

Query: 338 RNNPKLEVLLLKNNSFSG-ILQLPKAKHDFLHHLDISCNNFRGKLP-HNMGVILQKLMYM 395
                L V  L  NS SG    +  +    L  L++S N+  GK+P  +     Q L  +
Sbjct: 223 GLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRNSLIGKIPGDDYWGNFQNLRQL 282

Query: 396 DISKNCFEGNIPYSAGEM-KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
            ++ N + G IP     + + L +LDLS N  +G L QS  T C SL+ L+L NN   G 
Sbjct: 283 SLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSF-TSCGSLQSLNLGNNKLSGD 341

Query: 455 FFSEYMN-LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF--S 511
           F S  ++ L+R+ +LY   NN SG +   L + ++L+VLD+S+N  +G +P    +   S
Sbjct: 342 FLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSS 401

Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA 570
           S LE L ++ N+L G VPV+L   + L+ +D+S N L+G I   +  L  +  L +  N 
Sbjct: 402 SVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANN 461

Query: 571 LNGLIPGEL-FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629
           L G IP  +      L TL L +N  +G +P  I++ +N+ ++ L  N L G IP  + +
Sbjct: 462 LTGGIPESICVDGGNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGK 521

Query: 630 LQKLAMMDLSRNKFSGSIPPCFANV--LSWRVGSDDVLNGSKLNSP-ELDEEIEFGSLGN 686
           L+KLA++ L  N  +G+IP    N   L W   + + L G   N P EL  +   G +  
Sbjct: 522 LEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTG---NLPGELASQA--GLVMP 576

Query: 687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE------------IYNG------ 728
              S   F   R     + R A    VE E     R E            IY+G      
Sbjct: 577 GSVSGKQFAFVRNEGGTDCRGA-GGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMF 635

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           S+   +  LDLS N ++G IP   G +  +  LNL +N L+G+IP+SF  LK I  LD+S
Sbjct: 636 SSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLS 695

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQK 848
           +N L G +P  L  L+FLS  +VS NNL+G  P  GQ  TF  + Y  N  LC   +   
Sbjct: 696 HNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPPC 755

Query: 849 YSRTLKPTTTQA 860
            S + +PT + A
Sbjct: 756 SSGS-RPTRSHA 766

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  230 bits (586), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 214/681 (31%), Positives = 331/681 (48%), Gaps = 71/681 (10%)

Query: 185 QTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSL 244
           Q    I ELK+L  ++L  N     L + L N T L+ LD+S+N  +G +P +  +L +L
Sbjct: 91  QLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNL 150

Query: 245 EYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNL 304
            +L L  NN  G+ P S       + GL+                   +L+ L ++  NL
Sbjct: 151 TFLYLDRNNLSGLIPAS-------VGGLI-------------------ELVDLRMSYNNL 184

Query: 305 NGSYPDFLLHQYHLKYLDLSHNKLVGNFPT--WLLRNNPKLEVLLLKNNSFSGILQLPKA 362
           +G+ P+ L +   L+YL L++NKL G+ P   +LL N   L  L + NNS  G L    +
Sbjct: 185 SGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSS 241

Query: 363 KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLS 422
               L  LD+S N+F+G +P  +G     L  + + K    G IP S G ++++S++DLS
Sbjct: 242 NCKKLVSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLS 300

Query: 423 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 482
            N  SG + Q  +  C SLE L L++N  +G+       L +L+ L    N  SG+I  G
Sbjct: 301 DNRLSGNIPQE-LGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIG 359

Query: 483 LLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD 542
           +    SL  + + NN L+G +P  +      L+ L++  N   G++P+ L     L  +D
Sbjct: 360 IWKIQSLTQMLVYNNTLTGELPVEVTQL-KHLKKLTLFNNGFYGDIPMSLGLNRSLEEVD 418

Query: 543 ISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIP 600
           +  NR +G I   L +   +    L  N L+G IP  + R CK L  + L DN  SG +P
Sbjct: 419 LLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASI-RQCKTLERVRLEDNKLSGVLP 477

Query: 601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV- 659
            +  E  +L ++ LG N  +G IP  L   + L  +DLS+NK +G IPP   N+ S  + 
Sbjct: 478 -EFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLL 536

Query: 660 -GSDDVLNG---SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR-----AAID 710
             S + L G   S+L+        + GS   N S  + F  W+ LS L         AI 
Sbjct: 537 NLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLGAIP 596

Query: 711 ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAI-LALNLSNNSLS 769
           + +               + ++R++ L ++ N   G+IPS +G L+++   L+LS N  +
Sbjct: 597 QFL---------------AELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFT 641

Query: 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
           G IP +   L  +E L+IS NKLTG +   L +L  L+  +VSYN  +G  P        
Sbjct: 642 GEIPTTLGALINLERLNISNNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIPVN---LLS 697

Query: 830 DESSYRGNPSLCAWLIQQKYS 850
           + S + GNP LC   IQ  YS
Sbjct: 698 NSSKFSGNPDLC---IQASYS 715

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 212/676 (31%), Positives = 322/676 (47%), Gaps = 60/676 (8%)

Query: 195 NLFEMNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDL 249
           +L  ++L RN +  P+  +T L + + LK L++SSN L+   P  +S    L SLE LDL
Sbjct: 123 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 180

Query: 250 SHNNFEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGS 307
           S N+  G   +  + +    +L+ L +S    +  V     +    L  L ++  N +  
Sbjct: 181 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTG 237

Query: 308 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFL 367
            P FL     L++LD+S NKL G+F +  +    +L++L + +N F G   +P      L
Sbjct: 238 IP-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSL 293

Query: 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS 427
            +L ++ N F G++P  +      L  +D+S N F G +P   G    L  L LS N FS
Sbjct: 294 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 353

Query: 428 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 487
           G L    +     L++LDLS N F G+      NL                       S 
Sbjct: 354 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SA 390

Query: 488 SLQVLDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546
           SL  LD+S+N  SG I P+   N  + L+ L +  N   G +P  L+N   L  L +S N
Sbjct: 391 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 450

Query: 547 RLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605
            LSG I SSL +LS +  L L  N L G IP EL     L TL L  N  +G IP  ++ 
Sbjct: 451 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 510

Query: 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDD 663
            +NL ++ L  N L G IP  + +L+ LA++ LS N FSG+IP    +  S  W   + +
Sbjct: 511 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 570

Query: 664 VLNGSKLNSPELDEEIEFGS----------LGNNRSSNTMFGMWRWLSALEKRAAIDERV 713
           + NG+ + +    +  +  +          + N+       G    L     R+    R+
Sbjct: 571 LFNGT-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 629

Query: 714 EIEFAMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNS 767
                      +Y G       N   +  LD+S N L+G IP +IG +  +  LNL +N 
Sbjct: 630 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 689

Query: 768 LSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA 827
           +SGSIP+   +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF 
Sbjct: 690 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 749

Query: 828 TFDESSYRGNPSLCAW 843
           TF  + +  NP LC +
Sbjct: 750 TFPPAKFLNNPGLCGY 765

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 219/759 (28%), Positives = 333/759 (43%), Gaps = 117/759 (15%)

Query: 204 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 263
           N +   + + L +L  LK L +  N+LNG++P    NL +L+ L L+     G+ P S  
Sbjct: 130 NLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIP-SRF 188

Query: 264 ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL 323
               +L+ L+L        +  E    TS L +       LNGS P  L    +L+ L+L
Sbjct: 189 GRLVQLQTLILQDNELEGPIPAEIGNCTS-LALFAAAFNRLNGSLPAELNRLKNLQTLNL 247

Query: 324 SHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPH 383
             N   G  P+ L  +   ++ L L  N   G++     +   L  LD+S NN  G + H
Sbjct: 248 GDNSFSGEIPSQL-GDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVI-H 305

Query: 384 NMGVILQKLMYMDISKNCFEGNIPYS-AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 442
                + +L ++ ++KN   G++P +       L  L LS    SG +   + + C SL+
Sbjct: 306 EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI-SNCQSLK 364

Query: 443 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH 502
           LLDLSNN   GQ       L  L +LY  NN+  G +   + + T+LQ   + +N L G 
Sbjct: 365 LLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGK 424

Query: 503 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN-LSSV 561
           +P  +G F  +LEI+ + +N   G +PV++ N  RL+ +D   NRLSG I SS+  L  +
Sbjct: 425 VPKEIG-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDL 483

Query: 562 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG 621
             L L++N L G IP  L    ++  ++L DN  SG IP      + L   ++  N LQG
Sbjct: 484 TRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQG 543

Query: 622 PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP-ELDEEIE 680
            +PD L  L+ L  ++ S NKF+GSI P   +  S  +  D   NG + + P EL +   
Sbjct: 544 NLPDSLINLKNLTRINFSSNKFNGSISPLCGS--SSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 681 FGSL--GNNRSSNTM---FGMWRWLSALE-KRAAIDERVEIEFAM---------KNRY-- 723
              L  G N+ +  +   FG    LS L+  R ++   + +E  +          N Y  
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 724 -----------------------------EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 754
                                        EI++ +N+     L L  N L G IP +IG 
Sbjct: 662 GVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI---LTLFLDGNSLNGSIPQEIGN 718

Query: 755 LQAILALNLSNNSLSGS------------------------------------------- 771
           LQA+ ALNL  N LSG                                            
Sbjct: 719 LQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSY 778

Query: 772 ------IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 825
                 IP + S L  +ESLD+S+N+L G++P Q+  +  L   N+SYNNL G+   K Q
Sbjct: 779 NNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQ 836

Query: 826 FATFDESSYRGNPSLCAWLIQQ------KYSRTLKPTTT 858
           F+ +   ++ GN  LC   +        K  R+L P T 
Sbjct: 837 FSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTV 875

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	933
358345471	933	Receptor kinase [Medicago truncatula] gi	0.928	0.928	0.449	0.0
297842171	966	leucine-rich repeat family protein [Arab	0.937	0.905	0.404	1e-178
12324907	910	putative disease resistance protein; 468	0.919	0.942	0.412	1e-176
357468861	1016	Receptor-like protein kinase [Medicago t	0.916	0.841	0.403	1e-174
358345693	1011	Receptor-like protein kinase [Medicago t	0.916	0.845	0.403	1e-174
359482731	918	PREDICTED: probable LRR receptor-like se	0.927	0.942	0.419	1e-171
15221162	965	receptor like protein 15 [Arabidopsis th	0.933	0.902	0.393	1e-171
12323813	951	disease resistance protein, putative; 63	0.941	0.923	0.420	1e-169
359484714	862	PREDICTED: probable LRR receptor-like se	0.907	0.982	0.429	1e-164
334183409	932	receptor like protein 9 [Arabidopsis tha	0.921	0.922	0.396	1e-164

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/936 (44%), Positives = 542/936 (57%), Gaps = 70/936 (7%)

Query: 26  KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTG 85
           + CLE E+  LL +K+F IS S  +Y +  L+SW   D       DCC W+RVKCN TTG
Sbjct: 28  EGCLEKEKLGLLDLKTFLISNSTSKYNN--LTSWDKSD------VDCCSWERVKCNHTTG 79

Query: 86  RVMQLSLKNTT-RLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSL 144
            VM L L   T   N  Y W  + N S F P   L  LDLS N F         D    +
Sbjct: 80  HVMDLLLGGVTIPTNTTYLW--IFNFSYFLPFNHLVHLDLSANYF---------DGWVEI 128

Query: 145 KQLKILVLGHNYFDDSIF--SYLNTLPSLCTLILHWNR--IEGSQTNQGICELKNLFEMN 200
           +   IL    NY + ++       TL       L+ NR   E      G+C +KNL E++
Sbjct: 129 EGNFILDFFFNYHESNLVFRDGFTTLSHTTHQPLNVNRRLTENKIILTGLCGMKNLQELD 188

Query: 201 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL 260
           L RN +      CL+NLT L++LD+SSN   G++PS I +L SLEYL L   NF+G+F  
Sbjct: 189 LSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSLFDTNFDGIFSF 248

Query: 261 SSLANHSKLEGLLLSTRNNTLHVKTE---NWLPTSQLIVLGLTKCNLN----GSYPDFLL 313
           SSL NHSKLE  LLS + N L+V+TE   +W PT QL VL L  C LN    G++P FLL
Sbjct: 249 SSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLNSKRDGTFPTFLL 308

Query: 314 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 373
           +Q+ L+ LDLSHNKL GNFP+W+L NN KLE L L NNSF+G L+LP  KH  L  L IS
Sbjct: 309 YQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPTFKHGLLD-LQIS 367

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
            N   G+L  ++G I   L Y+++SKN FEG +P S GEM+ +  LDLS N FSG LS  
Sbjct: 368 NNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNNNFSGELSSH 427

Query: 434 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 493
           +++   SL LL LS+N+F G       NLTRL  LY  NN+FSG I+DG+ +++SL  LD
Sbjct: 428 LISNLTSLRLLRLSHNSFHG-LVPLLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSLFSLD 486

Query: 494 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 553
           ISNNMLSG IP W+G F+ +L +LS+SKN L+G +P +L NL  L  LD+SEN LS  + 
Sbjct: 487 ISNNMLSGRIPRWIGRFT-KLSVLSLSKNRLQGEIPNELCNLISLSYLDLSENNLSDFLP 545

Query: 554 SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 612
               N   ++ L LQKNAL G IP    +  KL +L+LRDN F G IP  IN  S LR L
Sbjct: 546 YCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQWINRLSKLRVL 605

Query: 613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 672
           LL GN L GPIP  +C+L+ + +MDLS N  + +IPPC  N+    V       G +   
Sbjct: 606 LLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKMVEFQTTAVGGRAVQ 665

Query: 673 PELDEEIEFGSLGNNRSSNTMFGMWRWL-----------SALEKRAAID-------ERVE 714
            + D + +    GN  +S        W            S+L     I        E VE
Sbjct: 666 NDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFYNSSLSLNHPIADEYMISYEIVE 725

Query: 715 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 774
           IEF  K+ Y  Y G+N+N +TGLDLS N L+G IP +IG+L+ I ALNLS+N  SGSIP 
Sbjct: 726 IEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRDIKALNLSHNRFSGSIPG 785

Query: 775 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSY 834
           +F NL  IESLD+SYN L+G +P  LT L  L+IFNVSYN  SGR P   QFA FDE++Y
Sbjct: 786 TFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFSGRVPTTMQFANFDENNY 845

Query: 835 RGNPSLCAWLIQQKYSRT--LKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVT 892
           RGN  LC  +I    + T    P +T               ++AIDM + Y S  ASYVT
Sbjct: 846 RGNSDLCGSVINITCNHTSIFPPASTT------------QHQTAIDMESFYWSCVASYVT 893

Query: 893 VILVLIAILWINSYWRRLWFYSIDRCINTWYYWLSK 928
           V++ L  ILW+NS+W R+WF  +D CI   +Y  S+
Sbjct: 894 VVIGLAVILWVNSHWCRVWFRYVDLCI---FYCFSR 926

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 403/997 (40%), Positives = 567/997 (56%), Gaps = 122/997 (12%)

Query: 6   VRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDD 65
           V L  ++I + +LM ++HGYK+C++ ER AL +++ + IS ++ +  DS+L +W +D   
Sbjct: 5   VFLGQNLIWVMLLMGQLHGYKSCIDKERNALFELRKYMISRTEEDQSDSVLPTWTND--- 61

Query: 66  DGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLS 125
               SDCC W+ V CN  +GRV +++    +  +        LN+SL HP E+++SL+LS
Sbjct: 62  --TTSDCCRWKGVACNRVSGRVTEIAFGGLSLKDNSL-----LNLSLLHPFEDVRSLNLS 114

Query: 126 VNIFT--YDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCT---------- 173
            + F+  +D  V  Y SLR L++L+IL L  N F++SIF +L+   SL T          
Sbjct: 115 SSRFSGLFD-DVEGYKSLRRLRKLEILDLSSNKFNNSIFHFLSAATSLTTLFLRSNNMVG 173

Query: 174 ---------------LILHWNRIEGS--------------------------------QT 186
                          L L  NR  GS                                 T
Sbjct: 174 SFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFST 233

Query: 187 N------QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISN 240
           N       GICELKN  E++L +N +     +CL +LT L++LD+SSNQL G++PS + +
Sbjct: 234 NLQEWCIHGICELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVPSTLGS 293

Query: 241 LTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTEN-WLPTSQLIVLGL 299
           L SLEYL L  N+FEG F   SLAN S L  L L +++++L V +E+ W P  QL V+ L
Sbjct: 294 LPSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIAL 353

Query: 300 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQL 359
             CN+    P FL+HQ  L+++DLS+NK+ G  P+WLL NN KL+VLLL+NN F+   Q+
Sbjct: 354 RSCNME-KVPHFLIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFTS-FQI 411

Query: 360 PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 419
           PK+ HD L  LD S N F    P N+G I   L YM+I KN F+GN+P S G MK L  L
Sbjct: 412 PKSAHDLLF-LDASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYL 470

Query: 420 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI 479
           DLS N F G L +S V GC+S+ +L LS+N   G+ F E  NLT L  L+ +NN F+GKI
Sbjct: 471 DLSHNSFHGKLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNLTSLLGLFMDNNLFTGKI 530

Query: 480 KDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 539
             GL S  +L++LD+SNN L+G IP W+G   S L  L +S N L+G +P  L N   L+
Sbjct: 531 GQGLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGEIPTSLFNKSSLQ 589

Query: 540 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 599
           +LD+S N LSG I    +      L LQ N L+G I   L  + ++  L+LR+N FSG I
Sbjct: 590 LLDLSTNSLSGGIPPHHDSRDGVVLLLQDNNLSGTIADTLLVNVEI--LDLRNNRFSGNI 647

Query: 600 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
           P  IN   N+  LLL GN L G IP QLC L  + ++DLS N+ +GSIP C +N  S+  
Sbjct: 648 PEFINTQ-NISILLLRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSNT-SFGF 705

Query: 660 GSD--------------DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 705
           G +              DV NG  L+            L +N++S   F     L     
Sbjct: 706 GKECTSYDYDFGISFPSDVFNGFSLHQ----------DLSSNKNSGIYFKSLLMLDPFSM 755

Query: 706 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN 765
                 + +IEFA K+RY+ Y G N+  + G+DLS N+L+GEIP + G L  + ALNLS+
Sbjct: 756 DYKAATQTKIEFATKHRYDAYMGGNLKLLFGIDLSENELSGEIPVEFGGLLELRALNLSH 815

Query: 766 NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 825
           N+LSG IP+S S+++ +ES D+S+N+L G+IP QLT L  LS+F VS+NNLSG  P+  Q
Sbjct: 816 NNLSGVIPKSLSSMEKMESFDLSFNRLQGRIPAQLTELTSLSVFKVSHNNLSGVIPEGRQ 875

Query: 826 FATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQA--SGAEEEEEEEDDDESAIDMVTLY 883
           F TFD  SY GN  LC            +PT      +  EE ++E +D+ES IDM + Y
Sbjct: 876 FNTFDAESYLGNRLLCG-----------QPTNRSCNNNSFEEADDEVEDNESTIDMESFY 924

Query: 884 SSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCIN 920
            SFGA+YVT+++ ++A L  +S W+R WF ++D  I+
Sbjct: 925 WSFGAAYVTILVGILASLSFDSPWKRFWFDTVDAFIH 961

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 390/945 (41%), Positives = 557/945 (58%), Gaps = 87/945 (9%)

Query: 19  MNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRV 78
           M ++HGYK+C++ E+ AL +++   IS ++ E   S+L +W +D       SDCC W+ V
Sbjct: 1   MGQLHGYKSCIDEEKIALFELRKHMISRTESE---SVLPTWTND-----TTSDCCRWKGV 52

Query: 79  KCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFT--YDSKVA 136
            CN  +GRV ++S    +  +        LN+SL HP E+++SL+LS +  +  +D  V 
Sbjct: 53  ACNRVSGRVTEISFGGLSLKDNSL-----LNLSLLHPFEDVRSLNLSSSRCSGLFD-DVE 106

Query: 137 AYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGS--------QTN- 187
            Y SLR L++L+IL L  N F++SIF +L+   SL TL L  N ++GS         TN 
Sbjct: 107 GYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNL 166

Query: 188 ----------------QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
                           QGICEL N+ E++L +N +   L +CL +LT L++LD+SSN+L 
Sbjct: 167 ELLDLSRNRFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLT 226

Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTEN-WLP 290
           G++PS + +L SLEYL L  N+FEG F   SLAN S L  L L +++++L V +E+ W P
Sbjct: 227 GTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKP 286

Query: 291 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKN 350
             QL V+ L  CN+    P FLLHQ  L+++DLS N + G  P+WLL NN KL+VLLL+N
Sbjct: 287 KFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQN 345

Query: 351 NSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA 410
           N F+   Q+PK+ H+ L  LD+S N+F    P N+G I   L Y++ SKN F+ N+P S 
Sbjct: 346 NLFTS-FQIPKSAHNLLF-LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSL 403

Query: 411 GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF 470
           G M  +  +DLSRN F G L +S V GC+S+ +L LS+N   G+ F E  N T +  L+ 
Sbjct: 404 GNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFM 463

Query: 471 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 530
           +NN F+GKI  GL S  +L++LD+SNN L+G IP W+G   S L  L +S N L+G++P+
Sbjct: 464 DNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGDIPM 522

Query: 531 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 590
            L N   L++LD+S N LSG I    +  +   L LQ N L+G IP  L  + ++  L+L
Sbjct: 523 SLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDL 580

Query: 591 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 650
           R+N FSG+IP  IN   N+  LLL GN+  G IP QLC L  + ++DLS N+ +G+IP C
Sbjct: 581 RNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSC 639

Query: 651 FANVLSWRVGSD--------------DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 696
            +N  S+  G +              DV NG  L+        +F S   N++    F  
Sbjct: 640 LSNT-SFGFGKECTSYDYDFGISFPSDVFNGFSLHQ-------DFSS---NKNGGIYFKS 688

Query: 697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 756
              L  L        + +IEFA K+RY+ Y G N+  + G+DLS N+L+GEIP + G L 
Sbjct: 689 LLTLDPLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLL 748

Query: 757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816
            + ALNLS+N+LSG IP+S S+++ +ES D+S+N+L G+IP QLT L  LS+F VS+NNL
Sbjct: 749 ELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNL 808

Query: 817 SGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEE--DDDE 874
           SG  P   QF TFD  SY GN  LC            +PT    +    EE +   + DE
Sbjct: 809 SGVIPQGRQFNTFDAESYFGNRLLCG-----------QPTNRSCNNNSYEEADNGVEADE 857

Query: 875 SAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
           S IDMV+ Y SF A+YVT+++ ++A L  +S W R WFY +D  I
Sbjct: 858 SIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 902

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 410/1016 (40%), Positives = 572/1016 (56%), Gaps = 161/1016 (15%)

Query: 9   SISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGM 68
           S  +  +T+++    G   CLE ER +LL+IK +F+S +   Y    L SWVDD D    
Sbjct: 8   SFLLYFVTLMLMLTQGCNGCLEKERISLLEIKHYFLSQTGDPYNK--LGSWVDDRD---- 61

Query: 69  PSDCCHWQRVKC-NATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEEL-------- 119
            S+CC W  VKC N ++G +++LS++     + P+D    LN+SLF P +EL        
Sbjct: 62  -SNCCSWNNVKCSNISSGHIIELSIRKLL-FDIPFDM--KLNVSLFRPFKELRLLDLSYN 117

Query: 120 -----------------QSLDLSVN-----IFTYDSKVAAYDSLRSL------------- 144
                            ++LDLS N     I      + A  +L+ +             
Sbjct: 118 SFLGWIGNEGFPRLKRLETLDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENFSAQGFS 177

Query: 145 --KQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWN---------------RIE----- 182
             K+L++L L  N  + +I + L+   SL +LIL +N               R+E     
Sbjct: 178 RSKELEVLDLSGNRLNCNIITSLHGFTSLRSLILSYNNFNCSLSTLDFAKFSRLELLDLG 237

Query: 183 GSQ----------------------TNQ--GICELKNLFEMNLERNFIGSPLITCLKNLT 218
           G+Q                       NQ  G+C  K+L E+++ +N   + L  CL NLT
Sbjct: 238 GNQFTGSLHVEDVQHLKNLKMLSLNDNQMNGLCNFKDLVELDISKNMFSAKLPDCLSNLT 297

Query: 219 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 278
            L++L++S+N  +G+ PS ISNLTSL YL    N  +G F LS+LANHS LE L +S++N
Sbjct: 298 NLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKN 357

Query: 279 NT-LHVKTEN--WLPTSQLIVLGLTKCNLN---GSY-PDFLLHQYHLKYLDLSHNKLVGN 331
           N  + ++TE   W P  QL  L +  CNLN   GS  P FL +QY+L YL LS N + G+
Sbjct: 358 NIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGS 417

Query: 332 FPT-WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
            P+ WL+ N                         D + +LDIS NN  G LP ++G+ L 
Sbjct: 418 LPSNWLIHN-------------------------DDMIYLDISNNNLSGLLPKDIGIFLP 452

Query: 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 450
            + Y++ S N FEGNIP S G+MK+L LLD S+N+FSG L + + TGC +L+ L LSNN 
Sbjct: 453 NVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNF 512

Query: 451 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 510
             G     + N   +  L+  NNNFSG ++D L ++T L+ L ISNN  SG IP  +G F
Sbjct: 513 LHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMF 571

Query: 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 570
           S+   +L MSKN LEG +P++++++ RL+ILD+S+N+L+G I     L+ +  L LQ+N 
Sbjct: 572 SNMWALL-MSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENG 630

Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
           L+G IP EL+   +L  L+LR+N FSG+IP+ +++ S LR LLLGGN+ +G IP QLC+L
Sbjct: 631 LSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRL 690

Query: 631 QKLAMMDLSRNKFSGSIPPCFANVL-SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS 689
           +K+ +MDLSRN  + SIP CF N+L   R   D V + S +             L     
Sbjct: 691 KKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSSI-------------LYGQHI 737

Query: 690 SNTMFGMWRWLS---ALEKRAAIDE--RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744
            +T +     LS    LEK   I++   +E+EF  K+    Y G  +  +TGLDLSCN+L
Sbjct: 738 QDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKL 797

Query: 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 804
           TG IPS IG LQ I ALNLS+N LSG IP +FSNL  IESLD+SYN L+G+IP +LT LN
Sbjct: 798 TGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLN 857

Query: 805 FLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAE 864
           FLS FNVSYNNLSG  P  GQFA FDE +YRGNPSLC  L+ +K  R   P ++Q++  E
Sbjct: 858 FLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNE 917

Query: 865 EEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCIN 920
           EE       E+ +DM+T Y SF ASY+T++L  I +L IN  WR  WFY I + +N
Sbjct: 918 EE-------ETGVDMITFYWSFTASYITILLAFITVLCINPRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 410/1016 (40%), Positives = 572/1016 (56%), Gaps = 161/1016 (15%)

Query: 9   SISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGM 68
           S  +  +T+++    G   CLE ER +LL+IK +F+S +   Y    L SWVDD D    
Sbjct: 8   SFLLYFVTLMLMLTQGCNGCLEKERISLLEIKHYFLSQTGDPYNK--LGSWVDDRD---- 61

Query: 69  PSDCCHWQRVKC-NATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEEL-------- 119
            S+CC W  VKC N ++G +++LS++     + P+D    LN+SLF P +EL        
Sbjct: 62  -SNCCSWNNVKCSNISSGHIIELSIRKLL-FDIPFDM--KLNVSLFRPFKELRLLDLSYN 117

Query: 120 -----------------QSLDLSVN-----IFTYDSKVAAYDSLRSL------------- 144
                            ++LDLS N     I      + A  +L+ +             
Sbjct: 118 SFLGWIGNEGFPRLKRLETLDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENFSAQGFS 177

Query: 145 --KQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWN---------------RIE----- 182
             K+L++L L  N  + +I + L+   SL +LIL +N               R+E     
Sbjct: 178 RSKELEVLDLSGNRLNCNIITSLHGFTSLRSLILSYNNFNCSLSTLDFAKFSRLELLDLG 237

Query: 183 GSQ----------------------TNQ--GICELKNLFEMNLERNFIGSPLITCLKNLT 218
           G+Q                       NQ  G+C  K+L E+++ +N   + L  CL NLT
Sbjct: 238 GNQFTGSLHVEDVQHLKNLKMLSLNDNQMNGLCNFKDLVELDISKNMFSAKLPDCLSNLT 297

Query: 219 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 278
            L++L++S+N  +G+ PS ISNLTSL YL    N  +G F LS+LANHS LE L +S++N
Sbjct: 298 NLRVLELSNNLFSGNFPSFISNLTSLAYLSFYGNYMQGSFSLSTLANHSNLEVLYISSKN 357

Query: 279 NT-LHVKTEN--WLPTSQLIVLGLTKCNLN---GSY-PDFLLHQYHLKYLDLSHNKLVGN 331
           N  + ++TE   W P  QL  L +  CNLN   GS  P FL +QY+L YL LS N + G+
Sbjct: 358 NIGVDIETEKTKWFPKFQLKSLIVRNCNLNKDEGSVIPTFLSYQYNLVYLVLSSNNINGS 417

Query: 332 FPT-WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
            P+ WL+ N                         D + +LDIS NN  G LP ++G+ L 
Sbjct: 418 LPSNWLIHN-------------------------DDMIYLDISNNNLSGLLPKDIGIFLP 452

Query: 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 450
            + Y++ S N FEGNIP S G+MK+L LLD S+N+FSG L + + TGC +L+ L LSNN 
Sbjct: 453 NVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNF 512

Query: 451 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 510
             G     + N   +  L+  NNNFSG ++D L ++T L+ L ISNN  SG IP  +G F
Sbjct: 513 LHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMF 571

Query: 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 570
           S+   +L MSKN LEG +P++++++ RL+ILD+S+N+L+G I     L+ +  L LQ+N 
Sbjct: 572 SNMWALL-MSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENG 630

Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
           L+G IP EL+   +L  L+LR+N FSG+IP+ +++ S LR LLLGGN+ +G IP QLC+L
Sbjct: 631 LSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRL 690

Query: 631 QKLAMMDLSRNKFSGSIPPCFANVL-SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS 689
           +K+ +MDLSRN  + SIP CF N+L   R   D V + S +             L     
Sbjct: 691 KKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAVFDLSSI-------------LYGQHI 737

Query: 690 SNTMFGMWRWLS---ALEKRAAIDE--RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744
            +T +     LS    LEK   I++   +E+EF  K+    Y G  +  +TGLDLSCN+L
Sbjct: 738 QDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKL 797

Query: 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 804
           TG IPS IG LQ I ALNLS+N LSG IP +FSNL  IESLD+SYN L+G+IP +LT LN
Sbjct: 798 TGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGKIPNELTQLN 857

Query: 805 FLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAE 864
           FLS FNVSYNNLSG  P  GQFA FDE +YRGNPSLC  L+ +K  R   P ++Q++  E
Sbjct: 858 FLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNE 917

Query: 865 EEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCIN 920
           EE       E+ +DM+T Y SF ASY+T++L  I +L IN  WR  WFY I + +N
Sbjct: 918 EE-------ETGVDMITFYWSFTASYITILLAFITVLCINPRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482731|ref|XP_003632819.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 391/933 (41%), Positives = 552/933 (59%), Gaps = 68/933 (7%)

Query: 35  ALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKN 94
            LL+ K+F     + E+ D +L SW+D++      S+CC+W+RV CN TTGRV +L L +
Sbjct: 2   GLLEFKAFL--ELNNEHADFLLPSWIDNNT-----SECCNWERVICNPTTGRVKKLFLND 54

Query: 95  TTRLN-------YPYD--WFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLK 145
            TR         Y Y+   F LLN+SLF P EEL  L+LS N F    +   +  L SLK
Sbjct: 55  ITRQQNFLEDDWYDYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEGFKGLSSLK 114

Query: 146 QLKILVLGHNYFDDSIFSYLNTLPSLCTLI-------------------------LHWNR 180
           +L+IL +  N FD S    L T+ SL TL                          L +N 
Sbjct: 115 KLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLYGSFSIRELASLRNLEGLDLSYND 174

Query: 181 IEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VIS 239
           +E  Q  QG C+L  L E++L  N     L  CL N T L++LD+S+N  +G+L S ++ 
Sbjct: 175 LESFQLLQGFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDLSANLFSGNLSSPLLP 234

Query: 240 NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE---NWLPTSQLIV 296
           NLTSLEY+DLS+N FEG F  SS ANHSKL+ ++L + NN   V+TE    W+P  QL V
Sbjct: 235 NLTSLEYIDLSYNQFEGSFSFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKV 294

Query: 297 LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356
           L L+ C L G  P FL +Q+ L  +DLSHN L G+FP WLL NN +LE L+L+NNS  G 
Sbjct: 295 LSLSSCKLTGDLPGFLQYQFRLVRVDLSHNNLTGSFPNWLLANNTRLEFLVLRNNSLMGQ 354

Query: 357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKEL 416
           L LP      +  LDIS N   G+L  N+  ++  +M +++S N FEG +P S  EM  L
Sbjct: 355 L-LPLRPTTRISSLDISHNQLDGQLQENVAHMIPHIMSLNLSNNGFEGILPSSIAEMISL 413

Query: 417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 476
            +LDLS N FSG + + ++     LE+L LSNN F G+ FS   NLT +  L   NN F+
Sbjct: 414 RVLDLSANNFSGEVPKQLL-ATKRLEILKLSNNKFHGEIFSRDFNLTWVEVLCLGNNQFT 472

Query: 477 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 536
           G + + +  ++ L VLD+SNN +SG IP  +GN + +L  L +  N  +G +P +++ L+
Sbjct: 473 GTLSNVISKNSWLSVLDVSNNYMSGEIPSQIGNMT-DLTTLVLGNNSFKGKLPPEISQLQ 531

Query: 537 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 596
            L  LD+S+N LSG + S  NL +++HL LQ N    LIP +   S  L+TL++R+N   
Sbjct: 532 GLEFLDVSQNALSGSLPSLKNLLNLKHLHLQGNMFTRLIPRDFLNSSNLLTLDIRENRLF 591

Query: 597 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 656
           G IP+ I+    LR LLLGGN L G IP+ LC L ++++MDLS N FSG IP CF ++  
Sbjct: 592 GSIPNSISALLKLRILLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIRF 651

Query: 657 WRVGSDDVLNGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
             +  +D + G  + S  E++  + +           +   W + S + K     E  E+
Sbjct: 652 GEMKKEDNVFGQFIESWYEMNPHLVYAGY--------LVKHWGFSSPIYK-----ETDEV 698

Query: 716 EFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES 775
           EF  KNR + Y G  +  ++GLDLSCN LTGEIP ++G L +I ALNLS+N L+GSIP+S
Sbjct: 699 EFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSSIHALNLSHNQLNGSIPKS 758

Query: 776 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSY 834
           FSNL  IESLD+SYNKL G+IP +L  LNFL +F+V+YNN+SGR P+ K QF TFDES+Y
Sbjct: 759 FSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNISGRVPNTKAQFGTFDESNY 818

Query: 835 RGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVI 894
            GNP LC  L+++K + +++     +   + E +  D     I+ V  ++SF  SY+ ++
Sbjct: 819 EGNPFLCGELLKRKCNTSIESPCAPSQSFKSEAKWYD-----INHVVFFASFTTSYIMIL 873

Query: 895 LVLIAILWINSYWRRLWFYSIDRCINTWYYWLS 927
           L  + +L+IN YWR  WF  I+ CI ++YY+ S
Sbjct: 874 LGFVTMLYINPYWRHRWFNFIEECIYSYYYFAS 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 392/996 (39%), Positives = 561/996 (56%), Gaps = 125/996 (12%)

Query: 6   VRLSISVIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDD 65
           V L  ++I + +LM ++HGYK+C++ E+ AL +++   IS ++ E   S+L +W +D   
Sbjct: 5   VFLGHNLIWVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTESE---SVLPTWTND--- 58

Query: 66  DGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLS 125
               SDCC W+ V CN  +GRV ++S    +  +        LN+SL HP E+++SL+LS
Sbjct: 59  --TTSDCCRWKGVACNRVSGRVTEISFGGLSLKDNSL-----LNLSLLHPFEDVRSLNLS 111

Query: 126 VNIFT--YDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCT---------- 173
            +  +  +D  V  Y SLR L++L+IL L  N F++SIF +L+   SL T          
Sbjct: 112 SSRCSGLFD-DVEGYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDG 170

Query: 174 ---------------LILHWNRIEGS---------------------------------- 184
                          L L  NR  GS                                  
Sbjct: 171 SFPAKELRDLTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCT 230

Query: 185 ----QTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISN 240
                   GICEL N+ E++L +N +   L +CL +LT L++LD+SSN+L G++PS + +
Sbjct: 231 DLLFSIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGS 290

Query: 241 LTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTEN-WLPTSQLIVLGL 299
           L SLEYL L  N+FEG F   SLAN S L  L L +++++L V +E+ W P  QL V+ L
Sbjct: 291 LQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIAL 350

Query: 300 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQL 359
             CN+    P FLLHQ  L+++DLS N + G  P+WLL NN KL+VLLL+NN F+   Q+
Sbjct: 351 RSCNME-KVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQI 408

Query: 360 PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 419
           PK+ H+ L  LD+S N+F    P N+G I   L Y++ SKN F+ N+P S G M  +  +
Sbjct: 409 PKSAHNLLF-LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYM 467

Query: 420 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI 479
           DLSRN F G L +S V GC+S+ +L LS+N   G+ F E  N T +  L+ +NN F+GKI
Sbjct: 468 DLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKI 527

Query: 480 KDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 539
             GL S  +L++LD+SNN L+G IP W+G   S L  L +S N L+G++P+ L N   L+
Sbjct: 528 GQGLRSLINLELLDMSNNNLTGVIPSWIGELPS-LTALLISDNFLKGDIPMSLFNKSSLQ 586

Query: 540 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 599
           +LD+S N LSG I    +  +   L LQ N L+G IP  L  + ++  L+LR+N FSG+I
Sbjct: 587 LLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKI 644

Query: 600 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
           P  IN   N+  LLL GN+  G IP QLC L  + ++DLS N+ +G+IP C +N  S+  
Sbjct: 645 PEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNT-SFGF 702

Query: 660 GSD--------------DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 705
           G +              DV NG  L+        +F S   N++    F     L  L  
Sbjct: 703 GKECTSYDYDFGISFPSDVFNGFSLHQ-------DFSS---NKNGGIYFKSLLTLDPLSM 752

Query: 706 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN 765
                 + +IEFA K+RY+ Y G N+  + G+DLS N+L+GEIP + G L  + ALNLS+
Sbjct: 753 DYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSH 812

Query: 766 NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 825
           N+LSG IP+S S+++ +ES D+S+N+L G+IP QLT L  LS+F VS+NNLSG  P   Q
Sbjct: 813 NNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQ 872

Query: 826 FATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEEE--DDDESAIDMVTLY 883
           F TFD  SY GN  LC            +PT    +    EE +   + DES IDMV+ Y
Sbjct: 873 FNTFDAESYFGNRLLCG-----------QPTNRSCNNNSYEEADNGVEADESIIDMVSFY 921

Query: 884 SSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
            SF A+YVT+++ ++A L  +S W R WFY +D  I
Sbjct: 922 LSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 405/963 (42%), Positives = 562/963 (58%), Gaps = 85/963 (8%)

Query: 12  VIMITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSD 71
           +I + +L+ ++ GYK C+E ER ALL++K + IS +     DS+L +W +D       S+
Sbjct: 11  LIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDTK-----SN 65

Query: 72  CCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFT- 130
           CC W+ +KCN T+GR+++LS+  T      +    LLN+SL HP EEL+SL+LS  I+  
Sbjct: 66  CCRWEGLKCNQTSGRIIELSIGQTN-----FKESSLLNLSLLHPFEELRSLNLSGEIYNE 120

Query: 131 ----YDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI----------- 175
               +D  V  Y+SLR L+ L+IL L  N F++SIF +LN   SL TL            
Sbjct: 121 FNGLFD-DVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLP 179

Query: 176 -------------------------------------LHWNRIEGSQTNQGICELKNLFE 198
                                                L WN ++G    +  CE+KNL +
Sbjct: 180 IKELKNLTKLELLDLSRSGYNGSIPELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQ 239

Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
           ++L  N+    L  CL NL +L++LD+SSNQL+G+LP+  ++L SLEYL LS NNFEG F
Sbjct: 240 LDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFF 299

Query: 259 PLSSLANHSKLEGLLLSTRNNTLHVKTE-NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 317
            L+ LAN +KL+   LS+ +  L V+TE NWLP  QL V  L  C+L G  P+FL++Q +
Sbjct: 300 SLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSL-GKIPNFLVYQTN 358

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
           L+ +DLS N+L G+ PTWLL NNP+L+VL LKNNSF+ I Q+P   H  L  LD S N+ 
Sbjct: 359 LRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDI 416

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
            G LP N+G +L +L++M+ S N F+GN+P S GEM ++S LDLS N FSG L +S++TG
Sbjct: 417 TGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTG 476

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
           CFSL  L LS+N+F G        LT L  L   NN F+G+I  GL +  +L + D SNN
Sbjct: 477 CFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNN 536

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 556
            L+G I   +   SS L +L +S N LEG +P  L  +  L  LD+S N LSG + SS+ 
Sbjct: 537 RLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVV 596

Query: 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
           N      + L  N+  G +P  L  +  +  L+LR+N  SG IP  +N    +  LLL G
Sbjct: 597 NSMYGIKIFLHNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMIT-LLLRG 653

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 676
           N+L G IP +LC L  + ++DLS NK +G IPPC  N LS  +G    L+G         
Sbjct: 654 NNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL-NHLSTELGEGIGLSG-------FS 705

Query: 677 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 736
           +EI FG         + F +  ++   +    I   VEIEFA K RY+ ++G  ++ + G
Sbjct: 706 QEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMI---VEIEFAAKQRYDSFSGGTLDYMYG 762

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           LDLS N+L+G IP+++G L  + ALNLS N LS SIP +FS LK IESLD+SYN L G I
Sbjct: 763 LDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNI 822

Query: 797 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPT 856
           P QLT L  L++FNVS+NNLSG  P  GQF TF+++SY GNP LC        S   K  
Sbjct: 823 PHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCG--TPTDRSCEGKKN 880

Query: 857 TTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSID 916
           T +A    EEEEE+DDDE+AIDMV LY + G++Y   ++ ++ ++  +  WRR W   +D
Sbjct: 881 TKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVD 940

Query: 917 RCI 919
             I
Sbjct: 941 AFI 943

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 388/903 (42%), Positives = 538/903 (59%), Gaps = 56/903 (6%)

Query: 29  LETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVM 88
           +E E+  LLQ+K     AS      + LSSW  +        DCC W+ V C+  T RV+
Sbjct: 1   MEEEKVGLLQLK-----ASINHPNGTALSSWGAEV------GDCCRWRYVTCDNKTSRVI 49

Query: 89  QLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLK 148
           +LSL ++ R +   +W   LN SL  P ++LQ LD++ N  T          L+ L +L+
Sbjct: 50  RLSL-SSIRDSELGEWS--LNASLLLPFQQLQILDMAENGLT---------GLKYLSRLE 97

Query: 149 ILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS 208
           +L L  N     I   ++TL  L +L L +N + GS + +G+C+L NL  ++L RN    
Sbjct: 98  VLNLKWNSLMGGIPPIISTLSHLKSLTLRYNNLNGSLSMEGLCKL-NLEALDLSRNGFEG 156

Query: 209 PLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
            L  CL NLT L++LD+S N  +G++PS + SNL SLEY+ LS N+FEG     SL NHS
Sbjct: 157 SLPACLNNLTSLRLLDLSENDFSGTIPSSLFSNLKSLEYISLSDNHFEGSIHFGSLFNHS 216

Query: 268 KLEGLLLSTRNNTLHVKTEN--W-LPTSQLIVLGLTKCNLNGS---YPDFLLHQYHLKYL 321
           +L    L++ N  L V+TEN  W  P  QL +L L+ C LN      P FL  QY L+ +
Sbjct: 217 RLVVFDLASNNKYLKVETENPIWSFPLFQLKILRLSNCTLNWPSWVLPSFLPSQYDLRMV 276

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPK-AKHDFLHHLDISCNNFRGK 380
           DLSHN + G+ PTWLL NN KLE L   +NS +G+L LP  +KH  +  LD S N   G+
Sbjct: 277 DLSHNNITGDIPTWLLDNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGE 336

Query: 381 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 440
           LP  +G I   L  +++S+N  +GNIP S G+M++L  LDLS N  SG L + ++ GC S
Sbjct: 337 LPPFIGSIFPGLEVLNLSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCIS 396

Query: 441 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 500
           L +L LSNN+  G   ++  NLT L  L  +NNNFSG+I  G L+S+SLQ LDIS+N L 
Sbjct: 397 LLVLKLSNNSLHGTLPTKS-NLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDISSNSLW 455

Query: 501 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSS 560
           G IP+W+G+FS  L  LS+S+NHL+G VP  L  L  LR LD+S N++   +    NL  
Sbjct: 456 GQIPNWIGDFSV-LSTLSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPCANLKK 514

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 620
           ++ L L+ N L+G IP  L  +  LVTLNLRDN  SG IPH I+  S LR LLL GN L+
Sbjct: 515 MKFLHLENNELSGPIPHVLSEATSLVTLNLRDNKLSGPIPHWISLLSKLRVLLLKGNELE 574

Query: 621 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 680
             IP QLCQL+ ++++DLS N  SG+IP C  N+   R     +++G+   S        
Sbjct: 575 DSIPLQLCQLKSVSILDLSHNHLSGTIPSCLDNITFGRKA--PLMDGTFFTS-------A 625

Query: 681 FGS---LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGL 737
           FG      +  S    F   +++      +A  E  EIEF  K+  E Y G+ +  ++GL
Sbjct: 626 FGGTHVFPDPSSYKNQFAKVQFIHISFGISA--ESEEIEFITKSWSESYMGNILYLMSGL 683

Query: 738 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797
           DLS N+LTG IP +IG L  I +LNLS N L G+IPE+FSNL+ IESLD+S+N+LT QIP
Sbjct: 684 DLSGNKLTGPIPPEIGNLSGIHSLNLSYNQLIGTIPETFSNLQEIESLDLSHNRLTSQIP 743

Query: 798 PQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPT 856
           PQ+  LNFL++F V++NNLSG+TP+ K QFATF++SSY GNP LC   +++        T
Sbjct: 744 PQMVELNFLTVFTVAHNNLSGKTPERKFQFATFEQSSYEGNPLLCGLPLERCS------T 797

Query: 857 TTQASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSID 916
            T A  A +     + + S+ + + L+ SFG SY    L +IA L++NSY+R L FY I 
Sbjct: 798 PTSAPPALKPPVSNNRENSSWEAIFLW-SFGGSYGVTFLGIIAFLYLNSYYRELLFYFIG 856

Query: 917 RCI 919
           + +
Sbjct: 857 KHV 859

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183409|ref|NP_176115.2| receptor like protein 9 [Arabidopsis thaliana] gi|332195389|gb|AEE33510.1| receptor like protein 9 [Arabidopsis thaliana]

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 383/967 (39%), Positives = 536/967 (55%), Gaps = 107/967 (11%)

Query: 15  ITVLMNEMHGYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCH 74
           + V+  +M GY +C+E ER  LL++K++     + EY       W +D       SDCC 
Sbjct: 15  VMVVSLQMQGYISCIEKERKGLLELKAYV----NKEYS----YDWSND-----TKSDCCR 61

Query: 75  WQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDL-SVNIFTYDS 133
           W+RV+C+ T+GRV+ L L  T   + P     L+N+SLFHP EEL++L+L       +  
Sbjct: 62  WERVECDRTSGRVIGLFLNQT--FSDPI----LINLSLFHPFEELRTLNLYDFGCTGWFD 115

Query: 134 KVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIE----------- 182
            +  Y SL  LK+L+IL +G+N  ++S+  +LN   SL TLILH N +E           
Sbjct: 116 DIHGYKSLGKLKKLEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEGTFPMKELKDL 175

Query: 183 -------------------------------------GSQTNQGICELKNLFEMNLERNF 205
                                                GS   +G+C+LKNL E++L +N 
Sbjct: 176 SNLELLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGREGLCQLKNLQELDLSQNE 235

Query: 206 IGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 265
              P   C  +LT+L++LD+SSNQ NG+LPSVISNL SLEYL LS N FEG F    +AN
Sbjct: 236 FTGPFPQCFSSLTQLQVLDMSSNQFNGTLPSVISNLDSLEYLSLSDNKFEGFFSFDLIAN 295

Query: 266 HSKLEGLLLSTRNNTLHVKTENWLPTS-QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLS 324
            SKL+   LS++++ LH+++E  L    +L V+ L  CNL  + P FL  Q  L+ ++LS
Sbjct: 296 LSKLKVFKLSSKSSLLHIESEISLQLKFRLSVIDLKYCNLE-AVPSFLQQQKDLRLINLS 354

Query: 325 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN 384
           +NKL G  P+W L N PKL VLLL NNSF+ I  LP+     LH LD+S N F   LP+N
Sbjct: 355 NNKLTGISPSWFLENYPKLRVLLLWNNSFT-IFHLPRLLVHSLHVLDLSVNKFDEWLPNN 413

Query: 385 MGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 444
           +G +L  + ++++S N F+GN+P S  EMK++  LDLS N  SG L +    GC SL +L
Sbjct: 414 IGHVLPNISHLNLSNNGFQGNLPSSFSEMKKIFFLDLSHNNLSGSLPKKFCIGCSSLSIL 473

Query: 445 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP 504
            LS N F G+ F + M L  LR L  +NN F+ +I D L+ S  L  L++SNN L G IP
Sbjct: 474 KLSYNRFSGKIFPQPMKLESLRVLIADNNQFT-EITDVLIHSKGLVFLELSNNSLQGVIP 532

Query: 505 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 564
            W G F      LS+S N L G +P  L N+   ++LD+S N+ SG + S  +   +  L
Sbjct: 533 SWFGGF--YFLYLSVSDNLLNGTIPSTLFNVS-FQLLDLSRNKFSGNLPSHFSFRHMGLL 589

Query: 565 SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 624
            L  N  +G +P  L  +  L  L+LR+N  SG IP  ++    L +LLL GN L G IP
Sbjct: 590 YLHDNEFSGPVPSTLLENVML--LDLRNNKLSGTIPRFVSNRYFL-YLLLRGNALTGHIP 646

Query: 625 DQLCQLQKLAMMDLSRNKFSGSIPPCFANV-----LSWRVGSDDVLNGSKLNSPELDEEI 679
             LC+L+ + ++DL+ N+ +GSIPPC  NV     L + +  D    GS       D+E+
Sbjct: 647 TSLCELKSIRVLDLANNRLNGSIPPCLNNVSFGRSLDYEIDPD---FGSSYGMVRADQEL 703

Query: 680 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 739
           E         S ++     +   L+    +D    +EFA K RY+ Y G +   + GLD 
Sbjct: 704 E------ESYSRSLVLPLEF--ELDYSGYLD--FTVEFASKRRYDSYMGESFKFMFGLDF 753

Query: 740 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 799
           S N+L GEIP ++G  Q I ALNLS+NSLSG +PESFSNL  IES+D+S+N L G IP  
Sbjct: 754 SSNELIGEIPRELGDFQRIRALNLSHNSLSGLVPESFSNLTDIESIDLSFNVLHGPIPHD 813

Query: 800 LTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQ 859
           LT L+++ +FNVSYNNLSG  P +G+F + D ++Y GNP LC   I        K     
Sbjct: 814 LTKLDYIVVFNVSYNNLSGLIPSQGKFLSLDVTNYIGNPFLCGTTIN-------KSCDDN 866

Query: 860 ASGAEEEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
            SG +E +    DDE+AIDM T Y S  A+Y    +  I  L  +S WR+ WF    R +
Sbjct: 867 TSGFKEIDSHSGDDETAIDMETFYWSLFATYGITWMAFIVFLCFDSPWRQAWF----RLV 922

Query: 920 NTWYYWL 926
           N +  +L
Sbjct: 923 NVFVSFL 929

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	933
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.834	0.798	0.415	1.9e-145
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.849	0.821	0.405	2.5e-145
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.782	0.674	0.413	2.4e-140
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.852	0.892	0.390	1.4e-133
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.851	0.849	0.365	7.9e-117
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.811	0.757	0.372	5.3e-104
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.917	0.942	0.341	2e-102
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.730	0.546	0.314	1.9e-70
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.741	0.552	0.314	1.8e-69
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.743	0.580	0.308	3e-65

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 336/808 (41%), Positives = 470/808 (58%)

Query:   116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSI-FSYLNTLPSLCTL 174
             L +L+ LDLS +   Y+  +  +  L  LK L    L  N F   +    L  L +L  L
Sbjct:   186 LTKLELLDLSRS--GYNGSIPEFTHLEKLKALD---LSANDFSSLVELQELKVLTNLEVL 240

Query:   175 ILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL 234
              L WN ++G    +  CE+KNL +++L  N+    L  CL NL +L++LD+SSNQL+G+L
Sbjct:   241 GLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNL 300

Query:   235 PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE-NWLPTSQ 293
             P+  ++L SLEYL LS NNFEG F L+ LAN +KL+   LS+ +  L V+TE NWLP  Q
Sbjct:   301 PASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQ 360

Query:   294 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 353
             L V  L  C+L G  P+FL++Q +L+ +DLS N+L G+ PTWLL NNP+L+VL LKNNSF
Sbjct:   361 LTVAALPFCSL-GKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSF 419

Query:   354 SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEM 413
             + I Q+P   H  L  LD S N+  G LP N+G +L +L++M+ S N F+GN+P S GEM
Sbjct:   420 T-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEM 477

Query:   414 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 473
              ++S LDLS N FSG L +S++TGCFSL  L LS+N+F G        LT L  L   NN
Sbjct:   478 NDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNN 537

Query:   474 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 533
              F+G+I  GL +  +L + D SNN L+G I   +   SS L +L +S N LEG +P  L 
Sbjct:   538 LFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLL 597

Query:   534 NLERLRILDISENRLSGPIASSLNLSSVEHLS--LQKNALNGLIPGELFRSCKLVTLNLR 591
              +  L  LD+S N LSG + SS+ ++S+  +   L  N+  G +P  L  +  +  L+LR
Sbjct:   598 AIHHLNFLDLSGNLLSGDLPSSV-VNSMYGIKIFLHNNSFTGPLPVTLLENAYI--LDLR 654

Query:   592 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651
             +N  SG IP  +N    +  LLL GN+L G IP +LC L  + ++DLS NK +G IPPC 
Sbjct:   655 NNKLSGSIPQFVNTGKMIT-LLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL 713

Query:   652 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE 711
              N LS  +G    L+G         +EI FG         + F +  ++   +    I  
Sbjct:   714 -NHLSTELGEGIGLSG-------FSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMI-- 763

Query:   712 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGS 771
              VEIEFA K RY+ ++G  ++ + GLDLS N+L+G IP+++G L  + A          S
Sbjct:   764 -VEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSS 822

Query:   772 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 831
             IP +FS LK IESLD+SYN L G IP QLT L  L++FNVS+NNLSG  P  GQF TF++
Sbjct:   823 IPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFND 882

Query:   832 SSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYV 891
             +SY GNP LC     +      K  T +A              +AIDMV LY + G++Y 
Sbjct:   883 NSYLGNPLLCGTPTDRSCEG--KKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYA 940

Query:   892 TVILVLIAILWINSYWRRLWFYSIDRCI 919
               ++ ++ ++  +  WRR W   +D  I
Sbjct:   941 IALIGILVLMCFDCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 337/831 (40%), Positives = 474/831 (57%)

Query:   109 NMSLFHPLEELQSLD-LSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSI-FSYLN 166
             N S+FH L    SL  L +     D    A + LR L  L++L L  N F+ SI    L+
Sbjct:   145 NNSIFHFLSAATSLTTLFLRSNNMDGSFPAKE-LRDLTNLELLDLSRNRFNGSIPIQELS 203

Query:   167 TLPSLCTLILHWNRIEGSQTNQG-------------ICELKNLFEMNLERNFIGSPLITC 213
             +L  L  L L  N   GS   QG             ICEL N+ E++L +N +   L +C
Sbjct:   204 SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSC 263

Query:   214 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
             L +LT L++LD+SSN+L G++PS + +L SLEYL L  N+FEG F   SLAN S L  L 
Sbjct:   264 LTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLK 323

Query:   274 LSTRNNTLHVKTEN-WLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 332
             L +++++L V +E+ W P  QL V+ L  CN+    P FLLHQ  L+++DLS N + G  
Sbjct:   324 LCSKSSSLQVLSESSWKPKFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDNNISGKL 382

Query:   333 PTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
             P+WLL NN KL+VLLL+NN F+   Q+PK+ H+ L  LD+S N+F    P N+G I   L
Sbjct:   383 PSWLLANNTKLKVLLLQNNLFTSF-QIPKSAHNLLF-LDVSANDFNHLFPENIGWIFPHL 440

Query:   393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 452
              Y++ SKN F+ N+P S G M  +  +DLSRN F G L +S V GC+S+ +L LS+N   
Sbjct:   441 RYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLS 500

Query:   453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
             G+ F E  N T +  L+ +NN F+GKI  GL S  +L++LD+SNN L+G IP W+G   S
Sbjct:   501 GEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPS 560

Query:   513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 572
              L  L +S N L+G++P+ L N   L++LD+S N LSG I    +  +   L LQ N L+
Sbjct:   561 -LTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLS 619

Query:   573 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 632
             G IP  L  + ++  L+LR+N FSG+IP  IN   N+  LLL GN+  G IP QLC L  
Sbjct:   620 GTIPDTLLANVEI--LDLRNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSN 676

Query:   633 LAMMDLSRNKFSGSIPPCFANVLSWRVGSD----DVLNGSKLNSPELDEEIEFGSLGNNR 688
             + ++DLS N+ +G+IP C +N  S+  G +    D   G    S   +         +N+
Sbjct:   677 IQLLDLSNNRLNGTIPSCLSNT-SFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNK 735

Query:   689 SSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 748
             +    F     L  L        + +IEFA K+RY+ Y G N+  + G+DLS N+L+GEI
Sbjct:   736 NGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEI 795

Query:   749 PSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 808
             P + G L  + A         G IP+S S+++ +ES D+S+N+L G+IP QLT L  LS+
Sbjct:   796 PVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSV 855

Query:   809 FNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAXXXXX 868
             F VS+NNLSG  P   QF TFD  SY GN  LC     Q  +R+    + + +       
Sbjct:   856 FKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCG----QPTNRSCNNNSYEEAD-----N 906

Query:   869 XXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
                   S IDMV+ Y SF A+YVT+++ ++A L  +S W R WFY +D  I
Sbjct:   907 GVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1373 (488.4 bits), Expect = 2.4e-140, P = 2.4e-140
 Identities = 311/752 (41%), Positives = 432/752 (57%)

Query:   175 ILHWNRIEGSQTNQG---ICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
             +L + R + S T++G   IC L  L E++L  N + S L  CL NLT L+ LD+S+NQLN
Sbjct:   336 VLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLN 394

Query:   232 GSLPSVISNLTS-LEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTEN-WL 289
             G+L S +S L S LEYL L  NNF+G F  +SL N ++L    LS++   + V+TE+ W 
Sbjct:   395 GNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWA 454

Query:   290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
             P  QL +L L+ C+L  +   FL+HQ  L ++DLSHNKL G FPTWL++NN +L+ +LL 
Sbjct:   455 PLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLS 514

Query:   350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
              NS +  LQLP   H  L  LDIS N     +  ++G++   L +M+ S N F+G IP S
Sbjct:   515 GNSLTK-LQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSS 572

Query:   410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469
              GEMK L +LD+S N   G L    ++GC+SL +L LSNN  +G+ FS++ NLT L  L+
Sbjct:   573 IGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLF 632

Query:   470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 529
              + NNF+G +++GLL S +L +LDIS+N  SG +P W+G  S  L  L MS N L+G  P
Sbjct:   633 LDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRIS-RLSYLYMSGNQLKGPFP 691

Query:   530 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589
               L     + ++DIS N  SG I  ++N  S+  L LQ N   GL+PG LF++  L  L+
Sbjct:   692 F-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLD 750

Query:   590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
             LR+N FSG+I + I++ S LR LLL  N  Q  IP ++CQL ++ ++DLS N+F G IP 
Sbjct:   751 LRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPS 810

Query:   650 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS-ALEKRAA 708
             CF+  +S+    +D        +  L  + +F  +      +  +G    L   +     
Sbjct:   811 CFSK-MSFGAEQND-------RTMSLVADFDFSYI--TFLPHCQYGSHLNLDDGVRNGYQ 860

Query:   709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXX 768
                   ++F  K+RYE Y G  +  + GLDLS N+L+GEIP +IG LQ I +        
Sbjct:   861 PKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRL 920

Query:   769 XGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFAT 828
              GSIP+S S LK +ESLD+S NKL G IPP L  LN L   N+SYNNLSG  P KG   T
Sbjct:   921 TGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVT 980

Query:   829 FDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGA 888
             FDE SY GN  LC     +       P     S             + IDMV  Y +  A
Sbjct:   981 FDERSYIGNAHLCGLPTNKNCISQRVPEPPSVS-THAKEEENEEEGNVIDMVWFYWTCAA 1039

Query:   889 SYVTVILVLIAILWINSYWRRLWFYSIDRCIN 920
              Y++  L L A L+I+S W R WFY +D C++
Sbjct:  1040 VYISTSLALFAFLYIDSRWSREWFYRVDLCVH 1071

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 328/841 (39%), Positives = 467/841 (55%)

Query:    91 SLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKIL 150
             SL+N   L+   +++    +   +    L++L L  N+F     V     L +L  L++L
Sbjct:    77 SLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILHDNLFKGGFPV---QELINLTSLEVL 133

Query:   151 VLGHNYFDDSIFSY-LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
              L  N F   + +  L  L +L  L L  N+  GS   QGIC L+ L E+ L RN     
Sbjct:   134 DLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGE 193

Query:   210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
             +  C    ++L++LD+SSN L+G +P  IS+  S+EYL L  N+FEG+F L  +   ++L
Sbjct:   194 IPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLGLITELTEL 253

Query:   270 EGLLLSTRNNTLHVKTENWLP--TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 327
             +   LS+R+  L +   N      SQL  + L+ CNL G  P FL +Q  L+ +DLS+N 
Sbjct:   254 KVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNL-GKIPGFLWYQQELRVIDLSNNI 312

Query:   328 LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 387
             L G FPTWLL NN +L+ LLL+NNSF   L LP+     L  LD+S NNF  +LP ++G+
Sbjct:   313 LSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRR-LQILDLSVNNFNNQLPKDVGL 370

Query:   388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447
             IL  L ++++S N F GN+P S   M+ +  +DLS N FSG L +++ TGC+SL  L LS
Sbjct:   371 ILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLS 430

Query:   448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 507
             +N F G    +  + T L  L  +NN F+GKI   LL+   L V+D+SNN+L+G IP W+
Sbjct:   431 HNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWL 490

Query:   508 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLS 565
             GNF   LE+L +S N L+G +P  L N+  L +LD+S N LSG  P+ SS +   +  L 
Sbjct:   491 GNFF--LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGYI--LD 546

Query:   566 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD 625
             L  N L G IP  L+   +L  L+LR+N  SG IP       ++  +LL  N+L G IP 
Sbjct:   547 LHNNNLTGSIPDTLWYGLRL--LDLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPV 603

Query:   626 QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGS-----DDVLNGSKL-NSPELDEEI 679
             +LC L  + M+D + N+ + SIP C  N LS+  G       D    S L N  E+  E+
Sbjct:   604 ELCGLSNVRMLDFAHNRLNESIPSCVTN-LSFGSGGHSNADSDWYPASLLSNFMEIYTEV 662

Query:   680 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 739
              + SL      +  F +           ++D  V++EFA+K RY++Y    +N++ GLDL
Sbjct:   663 YYESL----IVSDRFSL---------DYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDL 709

Query:   740 SCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQ 799
             S N+L+G IP ++G L+ + +         GSIP SFSNL+ IESLD+S+NKL G IP Q
Sbjct:   710 SSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQ 769

Query:   800 LTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQ 859
             LT L  L +FNVSYNNLSG  P   QF TF E SY GN  LC         R+   TT  
Sbjct:   770 LTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCG----SPTKRSCGGTTI- 824

Query:   860 ASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
             +SG              +D+V L+ S G +YVTV++  +  L  +S WRR WF  +D  I
Sbjct:   825 SSGKEYEDDDES---GLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

Query:   920 N 920
             +
Sbjct:   882 D 882

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 307/839 (36%), Positives = 439/839 (52%)

Query:    92 LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYD--SLRSLKQLKI 149
             L+N   ++   ++F   N S F  L    SL  +  I TY+     +    L+ L  L++
Sbjct:   123 LRNLKIMDLSTNYF---NYSTFPFLNAATSL--TTLILTYNEMDGPFPIKGLKDLTNLEL 177

Query:   150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
             L L  N  + S+   ++ L  L  L L  N+   S   Q +  L NL  + L +N +  P
Sbjct:   178 LDLRANKLNGSMQELIH-LKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDGP 236

Query:   210 L-ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 268
             + I     L  L+ LD+  N   G +P  + +L  L  LDLS N   G  P SS ++   
Sbjct:   237 IPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLP-SSFSSLES 295

Query:   269 LEGLLLSTRN--NTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 326
             LE L LS  N   +  +     L   + +V+ L  C+L    P FLL+Q  L+ +DLS N
Sbjct:   296 LEYLSLSDNNFDGSFSLNPLTNLTNLKFVVV-LRFCSLE-KIPSFLLYQKKLRLVDLSSN 353

Query:   327 KLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMG 386
              L GN PTWLL NNP+LEVL L+NNSF+ I  +P   H+ L   D S NN  GK P  M 
Sbjct:   354 NLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSANNI-GKFPDKMD 410

Query:   387 VILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 446
               L  L+ ++ S N F+G  P S GEMK +S LDLS N FSG L +S VTGC S+  L L
Sbjct:   411 HALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKL 470

Query:   447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 506
             S+N F G+F     N   L  L  +NN F+G I  GL +ST L++LD+SNN LSG IP W
Sbjct:   471 SHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRW 530

Query:   507 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 566
             +  F   L+ + +S N LEG +P  L  +  L  LD+S N+ SG + S ++     ++ L
Sbjct:   531 LFEFPY-LDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFL 589

Query:   567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 626
               N   G IP  L +S ++  L+LR+N  SG IP Q ++  ++  LLL GN+L G IP +
Sbjct:   590 HNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRE 646

Query:   627 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 686
             LC L  + ++DLS NK +G IP C +N+   R+  D +     LN P    +    SL  
Sbjct:   647 LCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMA----LNIPPSFLQT---SLEM 699

Query:   687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSN------VNRVTGLDLS 740
                 +T       +  +E   +  +  EI+FA K RY+ Y+G +      +  + G+DLS
Sbjct:   700 ELYKSTFL-----VDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLS 754

Query:   741 CNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 800
              N+L+G IP+++G L  +           GSIP SFS L  +ESLD+S+N L G IP  L
Sbjct:   755 NNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLL 814

Query:   801 TALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQA 860
             ++L  L++F+VS NNLSG  P   QF TF+E SY GNP LC        SR+ +  T ++
Sbjct:   815 SSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCG----PPTSRSCE--TNKS 868

Query:   861 SGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
                           +AIDM+  Y S  + YVT ++ ++ ++  +  WRR W   +D  I
Sbjct:   869 PEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 314/844 (37%), Positives = 422/844 (50%)

Query:   105 FPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSI-FS 163
             FP LN +       L+SL L  N         A + LR L  +++L L  N F+ SI   
Sbjct:   166 FPFLNSAT-----SLKSLSLWGN--NMGGPFPAKE-LRDLTNVELLDLSRNRFNGSIPVR 217

Query:   164 YLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLI-TC-LKNLTRLK 221
              L  L  L  L L  N    S       EL+  F           PL  TC  KN+  LK
Sbjct:   218 ALFALRKLKALDLSDNEFSSS------VELQGKFAKT-------KPLSGTCPWKNMEELK 264

Query:   222 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTL 281
             +   S+N+L G  P  +++LT L  LDLS N   G  P S+LAN   LE L L   N   
Sbjct:   265 L---SNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVP-SALANLESLEYLSLFGNNFEG 320

Query:   282 HVKTENWLPTSQLIVLGL-TKCN-LNGSY-----PDFLLHQYHLKYLDLS-------HNK 327
                       S+L VL L ++ N L   +     P F L    L+  +L        H K
Sbjct:   321 FFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQK 380

Query:   328 LVGNFP---TWLLRNNPK--LE-----VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
              + +       +  N P   LE      +LL  N+     QLPK+ H+ L  L++S N F
Sbjct:   381 DLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSFQLPKSAHNLLF-LNVSVNKF 439

Query:   378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
                   N G IL  L+ ++++ N F+GN+P S   MK +  LDLS N F G L +  + G
Sbjct:   440 NHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKG 499

Query:   438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
             C++L +L LS+N   G+ F E  N TRL  +  +NN F+G I  G  S  SL VLDISNN
Sbjct:   500 CYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNN 559

Query:   498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557
              L+G IP W+G     L  L +S N LEG +P  L N+  L++LD+S NRLSG I    +
Sbjct:   560 KLTGVIPSWIGERQG-LFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--H 616

Query:   558 LSSVEH---LSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 614
             +SS+ H   L LQ N L+G+IP  L  +  ++ L+LR+N  SG +P  IN   N+  LLL
Sbjct:   617 VSSIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFINTQ-NISILLL 673

Query:   615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV-LSWRVGSDDVLNGSKLNSP 673
              GN+  G IP Q C L  + ++DLS NKF+GSIP C +N     R G D         S 
Sbjct:   674 RGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDD---------SY 724

Query:   674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 733
               D    FG+          F     +         + + +IEFA K+RY+ Y G N+  
Sbjct:   725 RYDVPSRFGTA----KDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKL 780

Query:   734 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLT 793
             + G+DLS N+L+GEIP ++G L  + A         G I ESFS LK +ESLD+S+N+L 
Sbjct:   781 LFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQ 840

Query:   794 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKY-SRT 852
             G IP QLT +  L++FNVSYNNLSG  P   QF TF+  SY GNP LC   I     S  
Sbjct:   841 GPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNN 900

Query:   853 LKPTTTQASGAXXXXXXXXXXXSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWF 912
               PT    +G            S +DM + Y SF A+YVT++L ++A L  +S W R WF
Sbjct:   901 FHPTD---NGVEADE-------STVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWF 950

Query:   913 YSID 916
             Y +D
Sbjct:   951 YIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 323/946 (34%), Positives = 469/946 (49%)

Query:    17 VLMNEMHGYKACLETERTALLQIKSFFIS-ASDIEYKXXXXXXXXXXXXXXXXXXXCCHW 75
             +L+  +HG+ +C+E ER ALL++K F +S   + EY                    CC W
Sbjct:     2 LLLGHLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTKSD------CCQW 55

Query:    76 QRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLS---VNIFTYD 132
             + +KCN T+ R+  LSL  +  L        LLN+SL HP EE++SLDLS   +N    D
Sbjct:    56 ENIKCNRTSRRLTGLSLYTSYYLE-----ISLLNLSLLHPFEEVRSLDLSNSRLNGLVDD 110

Query:   133 SKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE 192
               V  Y SLR L+ L+IL    N F++SIF +LN   SL TL L  N + G    + +  
Sbjct:   111 --VEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKN 168

Query:   193 LKNLFEMNLERNFI-GSPLITCLKNLTRLKILDISSNQLNGSLP-SVISNLTSLEYLDLS 250
             L NL  ++L  N I GS  +     L +LK LD+SSN +  S+   V   + +L+ LDL 
Sbjct:   169 LTNLELLDLSGNRIDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLR 228

Query:   251 HNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYP- 309
               NF G  PL    N +KL  L LS+   T ++   ++     L  L L+  +  G +  
Sbjct:   229 GINFVGQLPLC-FGNLNKLRFLDLSSNQLTGNIPP-SFSSLESLEYLSLSDNSFEGFFSL 286

Query:   310 DFLLHQYHLK-YLDLSHNKLVGNF--PTWLLRNNP--KLEVLLLKNNSFSGILQLPKAKH 364
             + L +   LK ++  S + +V      TW     P  +L VL+L+  S   I      + 
Sbjct:   287 NPLTNLTKLKVFIFSSKDDMVQVKIESTW----QPLFQLSVLVLRLCSLEKIPNFLMYQK 342

Query:   365 DFLHHLDISCNNFRGKLP----------------HNMGVILQ------KLMYMDISKNCF 402
             + LH +D+S N   G +P                +N   I Q       L  +D S+N  
Sbjct:   343 N-LHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFTIFQMPTSVHNLQVLDFSENNI 401

Query:   403 EGNIPYSAGE-MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN 461
              G  P + G  +  L  ++ S N F G    S+    +++  LDLS NN  G+    +++
Sbjct:   402 GGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGE-MYNISFLDLSYNNLSGELPQSFVS 460

Query:   462 LT-RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS-ELEILSM 519
                 L  L   +N FSG       + TSL VL I+NN+ +G I   +G  +  +L IL M
Sbjct:   461 SCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIG--VGLLTLVDLCILDM 518

Query:   520 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGEL 579
             S N LEG +P  L   E L  LD+S N LSG + S ++L +V  L L  N   G IP   
Sbjct:   519 SNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNV--LFLHNNNFTGPIPDTF 576

Query:   580 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639
               S ++  L+LR+N  SG IP Q  +  ++ FLLL GN L G IP  LC+  K+ ++DLS
Sbjct:   577 LGSIQI--LDLRNNKLSGNIP-QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLS 633

Query:   640 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW 699
              NK +G IP CF N LS+ +   +     ++ +  +   +E   LG  +S+  +      
Sbjct:   634 DNKLNGFIPSCFNN-LSFGLARKE-----EITNYYVAVALESFYLGFYKSTFVVENF--- 684

Query:   700 LSALEKRAAIDERVEIEFAMKNRYEIYNGS------NVNRVTGLDLSCNQLTGEIPSDIG 753
                L+     +  ++++FA K RY+ Y G+       +N + GLDLS N+L+G IP+++G
Sbjct:   685 --RLDYSNYFE--IDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELG 740

Query:   754 QLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 813
              L  + A           IP+SFS L+ IESLD+SYN L G IP QLT L  L+IFNVSY
Sbjct:   741 DLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSY 800

Query:   814 NNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAXXXXXXXXXX 873
             NNLSG  P   QF TFDE+SY GNP LC          T K +   A+G           
Sbjct:   801 NNLSGIIPQGKQFNTFDENSYLGNPLLCGPPTDTS-CETKKNSEENANGGEEDDKEV--- 856

Query:   874 XSAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFYSIDRCI 919
               AIDM+  Y S   +YVT ++ ++ ++ ++  WRR W   +D  I
Sbjct:   857 --AIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 1.9e-70, P = 1.9e-70
 Identities = 224/712 (31%), Positives = 344/712 (48%)

Query:   139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGS-QTNQGICELKNLF 197
             ++L +L  L++L L        I S L  L  + +LIL  N +EG      G C    +F
Sbjct:   161 ETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVF 220

Query:   198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 257
                   N +   +   L  L  L+IL++++N L G +PS +  ++ L+YL L  N  +G+
Sbjct:   221 --TAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGL 278

Query:   258 FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL-HQY 316
              P  SLA+   L+ L LS  N T  +  E W   SQL+ L L   +L+GS P  +  +  
Sbjct:   279 IP-KSLADLGNLQTLDLSANNLTGEIPEEFW-NMSQLLDLVLANNHLSGSLPKSICSNNT 336

Query:   317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
             +L+ L LS  +L G  P  L +    L+ L L NNS +G   +P+A  + +   D+  +N
Sbjct:   337 NLEQLVLSGTQLSGEIPVELSKCQ-SLKQLDLSNNSLAG--SIPEALFELVELTDLYLHN 393

Query:   377 --FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434
                 G L  ++   L  L ++ +  N  EG +P     +++L +L L  N FSG + Q +
Sbjct:   394 NTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI 452

Query:   435 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494
                C SL+++D+  N+FEG+       L  L  L+   N   G +   L +   L +LD+
Sbjct:   453 -GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDL 511

Query:   495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 554
             ++N LSG IP   G F   LE L +  N L+GN+P  L +L  L  +++S NRL+G I  
Sbjct:   512 ADNQLSGSIPSSFG-FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHP 570

Query:   555 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 614
                 SS     +  N     IP EL  S  L  L L  N  +G+IP  + +   L  L +
Sbjct:   571 LCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDM 630

Query:   615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 674
               N L G IP QL   +KL  +DL+ N  SG IPP       W +G    L   KL+S +
Sbjct:   631 SSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP-------W-LGKLSQLGELKLSSNQ 682

Query:   675 LDEEIEFGSLGNNRSSNTMFGMWRWLS-ALEKRAAIDERVEIEFAMKNRYE--IYNG-SN 730
               E +    L N      +      L+ ++ +       + +    KN++   +      
Sbjct:   683 FVESLPT-ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK 741

Query:   731 VNRVTGLDLSCNQLTGEIPSDIGQLQAIL-AXXXXXXXXXGSIPESFSNLKMIESLDISY 789
             ++++  L LS N LTGEIP +IGQLQ +  A         G IP +   L  +E+LD+S+
Sbjct:   742 LSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSH 801

Query:   790 NKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 841
             N+LTG++P  +  +  L   NVS+NNL G+   K QF+ +   S+ GN  LC
Sbjct:   802 NQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLC 851

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 233/740 (31%), Positives = 356/740 (48%)

Query:   139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQ-GICELKNLF 197
             ++  +L  L++L L        I S    L  L TLIL  N +EG    + G C    LF
Sbjct:   162 ETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALF 221

Query:   198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 257
                  R  +   L   L  L  L+ L++  N  +G +PS + +L S++YL+L  N  +G+
Sbjct:   222 AAAFNR--LNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGL 279

Query:   258 FP--LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL-H 314
              P  L+ LAN   L+ L LS+ N T  +  E W   +QL  L L K  L+GS P  +  +
Sbjct:   280 IPKRLTELAN---LQTLDLSSNNLTGVIHEEFWR-MNQLEFLVLAKNRLSGSLPKTICSN 335

Query:   315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDI 372
                LK L LS  +L G  P  +  N   L++L L NN+ +G  Q+P +      L +L +
Sbjct:   336 NTSLKQLFLSETQLSGEIPAEI-SNCQSLKLLDLSNNTLTG--QIPDSLFQLVELTNLYL 392

Query:   373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 432
             + N+  G L  ++   L  L    +  N  EG +P   G + +L ++ L  N FSG +  
Sbjct:   393 NNNSLEGTLSSSISN-LTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPV 451

Query:   433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 492
              +   C  L+ +D   N   G+  S    L  L  L+   N   G I   L +   + V+
Sbjct:   452 EI-GNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVI 510

Query:   493 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 552
             D+++N LSG IP   G F + LE+  +  N L+GN+P  L NL+ L  ++ S N+ +G I
Sbjct:   511 DLADNQLSGSIPSSFG-FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSI 569

Query:   553 ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 612
             +     SS     + +N   G IP EL +S  L  L L  N F+GRIP    + S L  L
Sbjct:   570 SPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLL 629

Query:   613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 672
              +  N L G IP +L   +KL  +DL+ N  SG IP       +W +G   +L   KL+S
Sbjct:   630 DISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIP-------TW-LGKLPLLGELKLSS 681

Query:   673 PELDEEI--EFGSLGNNRS----SNTMFG-MWRWLSALEKRAAID-ERVEIEFAMKNRYE 724
              +    +  E  SL N  +     N++ G + + +  L+   A++ E  ++   + +   
Sbjct:   682 NKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTI- 740

Query:   725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL-AXXXXXXXXXGSIPESFSNLKMIE 783
                   ++++  L LS N LTGEIP +IGQLQ +  A         G IP + S L  +E
Sbjct:   741 ----GKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLE 796

Query:   784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAW 843
             SLD+S+N+L G++P Q+  +  L   N+SYNNL G+   K QF+ +   ++ GN  LC  
Sbjct:   797 SLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGS 854

Query:   844 LIQQ------KYSRTLKPTT 857
              +        K  R+L P T
Sbjct:   855 PLSHCNRAGSKNQRSLSPKT 874

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.0e-65, P = 3.0e-65
 Identities = 225/729 (30%), Positives = 341/729 (46%)

Query:   127 NIFTYDSKVAAYDSLRSLK-QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQ 185
             N  T+D      D + S+    K L +G +    S+ S    L  L +L L  + I GS 
Sbjct:    60 NPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS----LTGLESLFLSNSHINGSV 115

Query:   186 TNQGICELKNLFEMNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN--- 240
             +    C   +L  ++L RN +  P+  +T L + + LK L++SSN L+   P  +S    
Sbjct:   116 SGFK-CSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLK 171

Query:   241 LTSLEYLDLSHNNFEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLG 298
             L SLE LDLS N+  G   +  + +    +L+ L +S    +  V     +    L  L 
Sbjct:   172 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLD 228

Query:   299 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ 358
             ++  N +   P FL     L++LD+S NKL G+F    +    +L++L + +N F G   
Sbjct:   229 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVG--P 284

Query:   359 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL 418
             +P      L +L ++ N F G++P  +      L  +D+S N F G +P   G    L  
Sbjct:   285 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 344

Query:   419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTR-LRHLYFENNNFSG 477
             L LS N FSG L    +     L++LDLS N F G+      NL+  L  L   +NNFSG
Sbjct:   345 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 404

Query:   478 KIKDGLLSS--TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 535
              I   L  +   +LQ L + NN  +G IP  + N  SEL  L +S N+L G +P  L +L
Sbjct:   405 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSL 463

Query:   536 ERLRILDISENRLSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT 594
              +LR L +  N L G I   L  + ++E L L  N L G IP  L     L  ++L +N 
Sbjct:   464 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 523

Query:   595 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 654
              +G IP  I    NL  L L  N   G IP +L   + L  +DL+ N F+G+IP      
Sbjct:   524 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 583

Query:   655 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE 714
              S ++ ++ +     +       + E    GN      +      L+ L  R   +    
Sbjct:   584 -SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS--EQLNRLSTRNPCNITSR 640

Query:   715 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPE 774
             +     +     NGS    +  LD+S N L+G IP +IG +  +           GSIP+
Sbjct:   641 VYGGHTSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 696

Query:   775 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSY 834
                +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF TF  + +
Sbjct:   697 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 756

Query:   835 RGNPSLCAW 843
               NP LC +
Sbjct:   757 LNNPGLCGY 765

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1688__AT1G74190.1 annotation not avaliable (966 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	933
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-67
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-47
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  243 bits (621), Expect = 2e-67
 Identities = 190/655 (29%), Positives = 288/655 (43%), Gaps = 95/655 (14%)

Query: 193 LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252
           LK L   N   +      ITC  N +R+  +D+S   ++G + S I  L  ++ ++LS+N
Sbjct: 45  LKYLSNWNSSADVCLWQGITC-NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103

Query: 253 NFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL 312
              G  P                                                  D  
Sbjct: 104 QLSGPIP-------------------------------------------------DDIF 114

Query: 313 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 372
                L+YL+LS+N   G+ P   +   P LE L L NN  SG +         L  LD+
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171

Query: 373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 432
             N   GK+P+++   L  L ++ ++ N   G IP   G+MK L  + L  N  SG +  
Sbjct: 172 GGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 492
            +  G  SL  LDL  NN  G   S   NL  L++L+   N  SG I   + S   L  L
Sbjct: 231 EI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 493 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 552
           D+S+N LSG IP  +    + LEIL +  N+  G +PV L +L RL++L +  N+ SG I
Sbjct: 290 DLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 553 ASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN 608
             +L    NL+    L L  N L G IP  L  S  L  L L  N+  G IP  +    +
Sbjct: 349 PKNLGKHNNLTV---LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 609 LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 668
           LR + L  N   G +P +  +L  +  +D+S N   G I     N   W + S  +L+ +
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI-----NSRKWDMPSLQMLSLA 460

Query: 669 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAID-ERVEIEFAMKNRYEIYN 727
           +                     N  FG        ++   +D  R +   A+  +     
Sbjct: 461 R---------------------NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL---- 495

Query: 728 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI 787
             +++ +  L LS N+L+GEIP ++   + +++L+LS+N LSG IP SFS + ++  LD+
Sbjct: 496 -GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 788 SYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCA 842
           S N+L+G+IP  L  +  L   N+S+N+L G  P  G F   + S+  GN  LC 
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  201 bits (512), Expect = 3e-53
 Identities = 185/603 (30%), Positives = 283/603 (46%), Gaps = 70/603 (11%)

Query: 56  LSSWVDDDDDDGMPSDCCHWQRVKC-NATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFH 114
           LS+W          +D C WQ + C N++    + LS KN +           ++ ++F 
Sbjct: 48  LSNW-------NSSADVCLWQGITCNNSSRVVSIDLSGKNIS---------GKISSAIFR 91

Query: 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTL 174
            L  +Q+++LS N  +       + +  SL+ L    L +N F  SI     ++P+L TL
Sbjct: 92  -LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN---LSNNNFTGSIPR--GSIPNLETL 145

Query: 175 ILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL 234
            L  N + G +    I    +L  ++L  N +   +   L NLT L+ L ++SNQL G +
Sbjct: 146 DLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 235 PSVISNLTSLEYLDLSHNNFEGMFP-----LSSLANHSKLEGLLLSTRNNTLHVKTENWL 289
           P  +  + SL+++ L +NN  G  P     L+SL NH                       
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL-NH----------------------- 240

Query: 290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
                  L L   NL G  P  L +  +L+YL L  NKL G  P  +  +  KL  L L 
Sbjct: 241 -------LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLS 292

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
           +NS SG +     +   L  L +  NNF GK+P  +   L +L  + +  N F G IP +
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKN 351

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL--LDLSNNNFEGQFFSEYMNLTRLRH 467
            G+   L++LDLS N  +G + + +   C S  L  L L +N+ EG+          LR 
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGL---CSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408

Query: 468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527
           +  ++N+FSG++         +  LDISNN L G I     +  S L++LS+++N   G 
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS-LQMLSLARNKFFGG 467

Query: 528 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
           +P      +RL  LD+S N+ SG +   L +LS +  L L +N L+G IP EL    KLV
Sbjct: 468 LP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

Query: 587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 646
           +L+L  N  SG+IP   +E   L  L L  N L G IP  L  ++ L  +++S N   GS
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 647 IPP 649
           +P 
Sbjct: 587 LPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  181 bits (460), Expect = 7e-47
 Identities = 147/496 (29%), Positives = 221/496 (44%), Gaps = 70/496 (14%)

Query: 342 KLEVLLLKNNSFSGILQLP-------KAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
           +LE+LL    SF   +  P        +  D      I+CNN              +++ 
Sbjct: 30  ELELLL----SFKSSINDPLKYLSNWNSSADVCLWQGITCNNS------------SRVVS 73

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
           +D+S     G I  +   +  +  ++LS N  SG +   + T   SL  L+LSNNNF G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 455 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 514
                +    L  L   NN  SG+I + + S +SL+VLD+  N+L G IP+ + N +S L
Sbjct: 134 IPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS-L 190

Query: 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG 573
           E L+++ N L G +P +L  ++ L+ + +  N LSG I   +  L+S+ HL L  N L G
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Query: 574 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL 633
            IP  L     L  L L  N  SG IP  I     L  L L  N L G IP+ + QLQ L
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 634 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI--EFGSLGN----N 687
            ++ L  N F+G IP    ++   +V         +L S +   EI    G   N    +
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQV--------LQLWSNKFSGEIPKNLGKHNNLTVLD 362

Query: 688 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTG 746
            S+N + G                            EI  G  +   +  L L  N L G
Sbjct: 363 LSTNNLTG----------------------------EIPEGLCSSGNLFKLILFSNSLEG 394

Query: 747 EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 806
           EIP  +G  +++  + L +NS SG +P  F+ L ++  LDIS N L G+I  +   +  L
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 807 SIFNVSYNNLSGRTPD 822
            + +++ N   G  PD
Sbjct: 455 QMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 89.1 bits (221), Expect = 4e-18
 Identities = 39/88 (44%), Positives = 55/88 (62%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
           + GL L    L G IP+DI +L+ + ++NLS NS+ G+IP S  ++  +E LD+SYN   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 794 GQIPPQLTALNFLSIFNVSYNNLSGRTP 821
           G IP  L  L  L I N++ N+LSGR P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 551
           L + N  L G IP+ +      L+ +++S N + GN+P  L ++  L +LD+S N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 552 IASSL-NLSSVEHLSLQKNALNGLIPGEL 579
           I  SL  L+S+  L+L  N+L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 503
           L L N    G   ++   L  L+ +    N+  G I   L S TSL+VLD+S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 504 PHWMGNFSSELEILSMSKNHLEGNVPVQL 532
           P  +G  +S L IL+++ N L G VP  L
Sbjct: 483 PESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           S +  +  ++LS N + G IP  +G + ++  L+LS NS +GSIPES   L  +  L+++
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 789 YNKLTGQIPPQLTALNFL-SIFNVSYN 814
            N L+G++P  L       + FN + N
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.7 bits (134), Expect = 5e-08
 Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 15/226 (6%)

Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPS 170
            +      L+ LDLS N        +    LR+L  LK L L  N   D      N L +
Sbjct: 134 LIGLLKSNLKELDLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN-LSN 187

Query: 171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQL 230
           L  L L  N+I  S     I  L  L E++L  N I   L++ L NL  L  L++S+N+L
Sbjct: 188 LNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKL 244

Query: 231 NGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN--NTLHVKTENW 288
              LP  I NL++LE LDLS+N    +  +SSL + + L  L LS  +  N L +     
Sbjct: 245 E-DLPESIGNLSNLETLDLSNNQ---ISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 334
           L    L+ L LT   L       LL+   L   + S  + +    +
Sbjct: 301 LLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILES 346

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 46/88 (52%)

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 620
           ++ L L    L G IP ++ +   L ++NL  N+  G IP  +   ++L  L L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 621 GPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
           G IP+ L QL  L +++L+ N  SG +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 187 NQG--------ICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI 238
           NQG        I +L++L  +NL  N I   +   L ++T L++LD+S N  NGS+P  +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 239 SNLTSLEYLDLSHNNFEGMFP 259
             LTSL  L+L+ N+  G  P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 7e-07
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 361 KAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD 420
                F+  L +     RG +P+++   L+ L  +++S N   GNIP S G +  L +LD
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 421 LSRNYFSGGLSQSV--VTGCFSLELLDLSNNNFEGQ 454
           LS N F+G + +S+  +T   SL +L+L+ N+  G+
Sbjct: 473 LSYNSFNGSIPESLGQLT---SLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 346 LLLKNNSFSGIL--QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 403
           L L N    G +   + K +H  L  +++S N+ RG +P ++G I   L  +D+S N F 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFN 479

Query: 404 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434
           G+IP S G++  L +L+L+ N  SG +  ++
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 23/111 (20%)

Query: 517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 576
           L +    L G +P  ++ L  L+ +++S N + G I  SL                G I 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------------GSIT 466

Query: 577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 627
                   L  L+L  N+F+G IP  + + ++LR L L GN L G +P  L
Sbjct: 467 S-------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNT-----LPSLCT 173
           LQ LDLS N    D      +SL     L+ L L +N   D     L        P+L  
Sbjct: 83  LQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 174 LILHWNRIEG------SQTNQGICELKNLFEMNLERNFIGSPLITCL----KNLTRLKIL 223
           L+L  NR+EG      ++  +   +LK   E+NL  N IG   I  L    K    L++L
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLK---ELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 224 DISSNQLN----GSLPSVISNLTSLEYLDLSHNN 253
           D+++N L      +L   +++L SLE L+L  NN
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 588 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647
           L L +    G IP+ I++  +L+ + L GN ++G IP  L  +  L ++DLS N F+GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 648 PPCFANVLSWRVGSDDVLNGSKL 670
           P     + S R+ +   LNG+ L
Sbjct: 483 PESLGQLTSLRILN---LNGNSL 502

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 20/192 (10%)

Query: 106 PLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYL 165
            LL   L      L+ L L  N     S  A   +LR+ + LK L L +N   D+    L
Sbjct: 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185

Query: 166 -NTLPSLCTLILHW------NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKN-- 216
              L + C L +             S   + +  LK+L  +NL  N +       L +  
Sbjct: 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245

Query: 217 ---LTRLKILDISSNQLN----GSLPSVISNLTSLEYLDLSHNNF--EGMFPLSS--LAN 265
                 L  L +S N +       L  V++   SL  LDL  N F  EG   L+   L  
Sbjct: 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305

Query: 266 HSKLEGLLLSTR 277
            ++LE L +   
Sbjct: 306 GNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 439 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN- 497
            +L+ LDLS+N  E    S   NL  L++L    N+ S  +   L + ++L  LD+S N 
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 498 --MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 555
              L   I        S LE L +S N +   +   L+NL+ L  L++S N+L     S 
Sbjct: 198 ISDLPPEI-----ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI 251

Query: 556 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589
            NLS++E L L  N ++ +       + + + L+
Sbjct: 252 GNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 203 RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 262
           R FI + +      L  L+ +++S N + G++P  + ++TSLE LDLS+N+F G  P  S
Sbjct: 431 RGFIPNDI----SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ES 485

Query: 263 LANHSKLEGLLL 274
           L   + L  L L
Sbjct: 486 LGQLTSLRILNL 497

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 29/60 (48%)

Query: 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
           NL  ++L  N +        K L  LK+LD+S N L    P   S L SL  LDLS NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query: 441 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 500
           L+ ++LS N+  G       ++T L  L    N+F+G I + L   TSL++L+++ N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 501 GHIPHWMG 508
           G +P  +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 792
           LDLS N+LT         L  +  L+LS N+L+   PE+FS L  + SLD+S N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 29 LETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCN 81
          L  +R ALL  KS              LSSW          SD C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPS-----GALSSWNPSS------SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 37/211 (17%)

Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 471
            M EL  +DLS N       + +     ++   +L   NF   F        R +   + 
Sbjct: 28  MMDELVEVDLSGNTIGTEAMEELCNVIANVR--NLRVVNFSDAF------TGRDKDELYS 79

Query: 472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF---SSELEILSMSKNHL---- 524
           N     K    LL    LQ +D+S+N      P  +G+    S++L  L ++ N L    
Sbjct: 80  NLVMLLKA---LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136

Query: 525 ---------EGNVPVQLNNLERLRILDISENRL-SGPIA-SSLNLSSVEHLSLQKNALNG 573
                          +  +  +L ++    NRL +G    S+  L S E+L   K   NG
Sbjct: 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG 196

Query: 574 LIPG--------ELFRSCKLVTLNLRDNTFS 596
           + P          LF S  L  L+L+DNTF+
Sbjct: 197 IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227

Length = 388

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 26/111 (23%)

Query: 223 LDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
           L + +  L G +P+ IS L  L+ ++LS N+  G  P  SL + + LE            
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLE------------ 469

Query: 283 VKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 333
                        VL L+  + NGS P+ L     L+ L+L+ N L G  P
Sbjct: 470 -------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 3/80 (3%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           LDLS N++   +PS +  L  +  L+LS N LS  +P+  SNL  + +LD+S NK++  +
Sbjct: 145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DL 201

Query: 797 PPQLTALNFLSIFNVSYNNL 816
           PP++  L+ L   ++S N++
Sbjct: 202 PPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 67/301 (22%), Positives = 104/301 (34%), Gaps = 68/301 (22%)

Query: 141 LRSLKQLKILVLGHNYFDDS----IFSYLNTLPSLCTLILHWNRIEGSQTNQGIC----- 191
           L  L  L++L L  N   +     + S L   PSL  L L  N                 
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78

Query: 192 ELKNLFEMNLERNFIGSPLITCLKNLTR---LKILDISSNQLNG--------SLPSVISN 240
           +   L E++L  N +G      L++L R   L+ L +++N L           L  +   
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 241 LTSLEYLDLSHNNFE--GMFPLSS-LANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 297
           L  L    L  N  E      L+  L  +  L+ L L+  NN +           + +  
Sbjct: 139 LEKL---VLGRNRLEGASCEALAKALRANRDLKELNLA--NNGIGD------AGIRALAE 187

Query: 298 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV---GNFPTWLLRNNPKLEVLLLKNNSFS 354
           GL                 +L+ LDL++N L     +     L +   LEVL L +N+ +
Sbjct: 188 GLK-------------ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

Query: 355 --GILQLPKA---KHDFLHHLDISCNN--------FRGKLPHNMGVILQKLMYMDISKNC 401
             G   L  A    +  L  L +SCN+            L          L+ +D+  N 
Sbjct: 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-----SLLELDLRGNK 289

Query: 402 F 402
           F
Sbjct: 290 F 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 53/250 (21%), Positives = 79/250 (31%), Gaps = 62/250 (24%)

Query: 416 LSLLDLSRNYFSGGLSQSV--VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 473
           L  LDLS N         +  +    SL+ L L+NN               LR L     
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD---------RGLRLL----- 128

Query: 474 NFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 532
                   GL     +L+ L +  N L G         S E    ++  N          
Sbjct: 129 ------AKGLKDLPPALEKLVLGRNRLEGA--------SCEALAKALRAN---------- 164

Query: 533 NNLERLRILDISENRLSGPIASSL-----NLSSVEHLSLQKNALN---GLIPGELFRS-C 583
                L+ L+++ N +      +L        ++E L L  N L         E   S  
Sbjct: 165 ---RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 584 KLVTLNLRDNTFSGRI-----PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK----LA 634
            L  LNL DN  +           ++ + +L  L L  N +       L ++      L 
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281

Query: 635 MMDLSRNKFS 644
            +DL  NKF 
Sbjct: 282 ELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 297 LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356
           LGL    L G  P+ +    HL+ ++LS N + GN P   L +   LEVL L  NSF+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS 481

Query: 357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMG 386
           +     +   L  L+++ N+  G++P  +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 45/191 (23%), Positives = 68/191 (35%), Gaps = 33/191 (17%)

Query: 481 DGLLSSTSLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGN-----VPVQLN 533
            GL     LQ LD+S+N L       + +   SS L+ L ++ N L             +
Sbjct: 75  QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD 134

Query: 534 NLERLRILDISENRLSG----PIASSL-NLSSVEHLSLQKNALNG-----LIPGELFRSC 583
               L  L +  NRL G     +A +L     ++ L+L  N +       L  G L  +C
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANC 193

Query: 584 KLVTLNLRDNTF----SGRIPHQINEHSNLRFLLLGGN--------HLQGPIPDQLCQLQ 631
            L  L+L +N      +  +   +    +L  L LG N         L   +      L 
Sbjct: 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253

Query: 632 KLAMMDLSRNK 642
            L    LS N 
Sbjct: 254 TL---SLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 262
           T L+ LD+S+NQ+   LP  +SNL +LE LDLS N    + PLS+
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 74/277 (26%), Positives = 108/277 (38%), Gaps = 60/277 (21%)

Query: 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
           L NL  L  LD++ NRL   I+  L L+++  L L  N +  + P        L  L+L 
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 592 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651
           DN     +P  +    NL+ L L  N L   +P  L  L  L  +DLS NK S  +PP  
Sbjct: 149 DNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPP-- 203

Query: 652 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE 711
                                 EL   +E   L NN     +  +               
Sbjct: 204 --------------------EIELLSALEELDLSNNSIIELLSSL--------------- 228

Query: 712 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 771
                            SN+  ++GL+LS N+L  ++P  IG L  +  L+LSNN +  S
Sbjct: 229 -----------------SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--S 268

Query: 772 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 808
              S  +L  +  LD+S N L+  +P     L  L +
Sbjct: 269 SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLEL 305

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	933
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.57
PLN03150	623	hypothetical protein; Provisional	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG4341	483	consensus F-box protein containing LRR [General fu	98.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
KOG4341	483	consensus F-box protein containing LRR [General fu	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.27
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.16
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.39
KOG4308	478	consensus LRR-containing protein [Function unknown	93.85
KOG4308	478	consensus LRR-containing protein [Function unknown	93.48
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.99
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.33
smart00370	26	LRR Leucine-rich repeats, outliers.	85.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.23
smart00370	26	LRR Leucine-rich repeats, outliers.	84.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.67
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.25

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5e-71  Score=694.20  Aligned_cols=583  Identities=33%  Similarity=0.522  Sum_probs=415.1

Q ss_pred             hHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccc
Q 002350           29 LETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLL  108 (933)
Q Consensus        29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~  108 (933)
                      .++|++||++||+++.++      .+.+++| +..      .+||.|.||+|+. .++|+.|++++...   +       
T Consensus        27 ~~~~~~~l~~~~~~~~~~------~~~~~~w-~~~------~~~c~w~gv~c~~-~~~v~~L~L~~~~i---~-------   82 (968)
T PLN00113         27 HAEELELLLSFKSSINDP------LKYLSNW-NSS------ADVCLWQGITCNN-SSRVVSIDLSGKNI---S-------   82 (968)
T ss_pred             CHHHHHHHHHHHHhCCCC------cccCCCC-CCC------CCCCcCcceecCC-CCcEEEEEecCCCc---c-------
Confidence            568999999999998533      4578999 654      6899999999985 57899888876542   1       


Q ss_pred             cccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEecCCCcccCccCh
Q 002350          109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLN-TLPSLCTLILHWNRIEGSQTN  187 (933)
Q Consensus       109 ~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~  187 (933)
                                            +..+    ..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++..| 
T Consensus        83 ----------------------~~~~----~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-  135 (968)
T PLN00113         83 ----------------------GKIS----SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-  135 (968)
T ss_pred             ----------------------ccCC----hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-
Confidence                                  2222    3344555555555555555544444433 56666666666666655544 


Q ss_pred             hhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCC
Q 002350          188 QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS  267 (933)
Q Consensus       188 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  267 (933)
                        .+.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.          
T Consensus       136 --~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~----------  203 (968)
T PLN00113        136 --RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ----------  203 (968)
T ss_pred             --ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc----------
Confidence              23456666666666666666666666666666666666666666666666666666666666655432          


Q ss_pred             CCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEE
Q 002350          268 KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLL  347 (933)
Q Consensus       268 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  347 (933)
                                                              +|..+.++++|++|++++|.+.+.+|..+. .+       
T Consensus       204 ----------------------------------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l-------  235 (968)
T PLN00113        204 ----------------------------------------IPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GL-------  235 (968)
T ss_pred             ----------------------------------------CChHHcCcCCccEEECcCCccCCcCChhHh-cC-------
Confidence                                                    334444555555556655555555554332 22       


Q ss_pred             cCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCC
Q 002350          348 LKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS  427 (933)
Q Consensus       348 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  427 (933)
                                       ++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus       236 -----------------~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        236 -----------------TSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             -----------------CCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence                             2333333334444334444443 2566666666666666556655555555555555555555


Q ss_pred             CCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhH
Q 002350          428 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM  507 (933)
Q Consensus       428 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  507 (933)
                      +.+                         |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+
T Consensus       298 ~~~-------------------------p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        298 GEI-------------------------PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             cCC-------------------------ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence            444                         4444445555555555555555555555556666666666666666666666


Q ss_pred             hhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCcc
Q 002350          508 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV  586 (933)
Q Consensus       508 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  586 (933)
                      +.+.. |+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ .+++|+.|++++|++++.+|..+..+++|+
T Consensus       353 ~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  431 (968)
T PLN00113        353 GKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY  431 (968)
T ss_pred             hCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence            65554 6666666666666666666666677777777777776666665 677777777777777777888888888888


Q ss_pred             EEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccC
Q 002350          587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLN  666 (933)
Q Consensus       587 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~  666 (933)
                      .|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.++            
T Consensus       432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l------------  498 (968)
T PLN00113        432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL------------  498 (968)
T ss_pred             EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh------------
Confidence            99999999888888888888999999999999988888765 45889999999999999888776543            


Q ss_pred             CCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC
Q 002350          667 GSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG  746 (933)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g  746 (933)
                                                                                       ++|+.|||++|+++|
T Consensus       499 -----------------------------------------------------------------~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        499 -----------------------------------------------------------------SELMQLKLSENKLSG  513 (968)
T ss_pred             -----------------------------------------------------------------hccCEEECcCCccee
Confidence                                                                             356779999999999


Q ss_pred             CCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcC
Q 002350          747 EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQF  826 (933)
Q Consensus       747 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~  826 (933)
                      .+|..++.+++|++|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..++|
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCcccccCCCCCCCcc
Q 002350          827 ATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       827 ~~~~~~~~~gN~~lc~~~  844 (933)
                      .++...++.||+.+|+.+
T Consensus       594 ~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        594 LAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccChhhhcCCccccCCc
Confidence            999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-57  Score=570.43  Aligned_cols=516  Identities=32%  Similarity=0.542  Sum_probs=421.2

Q ss_pred             CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhcc-CCCCCCEEECCCCcCCCCCChhhhhcCCCCceEe
Q 002350          195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL  273 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  273 (933)
                      +++.|+|++|.+.+.++..+..+++|++|+|++|++++.+|..+. .+++|++|++++|.+++.+|.             
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-------------  136 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-------------  136 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-------------
Confidence            455555555555555555666666666666666666665555443 666666666666666655442             


Q ss_pred             cccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCC
Q 002350          274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF  353 (933)
Q Consensus       274 L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l  353 (933)
                                     ..+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+. ++++           
T Consensus       137 ---------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~-----------  189 (968)
T PLN00113        137 ---------------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTS-----------  189 (968)
T ss_pred             ---------------cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcC-----------
Confidence                           1123344555555555555666666777777777777776666665543 4444           


Q ss_pred             cCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchh
Q 002350          354 SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS  433 (933)
Q Consensus       354 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  433 (933)
                                   |++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus       190 -------------L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        190 -------------LEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             -------------CCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence                         44555555555555666554 3677777777777777777777777778888888888777666654


Q ss_pred             hhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccc
Q 002350          434 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE  513 (933)
Q Consensus       434 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~  513 (933)
                      + ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++. 
T Consensus       256 l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-  333 (968)
T PLN00113        256 L-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-  333 (968)
T ss_pred             H-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC-
Confidence            3 57788888888888888888888889999999999999999999999999999999999999999999999999887 


Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                      |+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ .+++|+.|++++|++.+.+|..+..+++|+.|++++
T Consensus       334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence            9999999999999999999999999999999999999988887 889999999999999999999999999999999999


Q ss_pred             CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCC
Q 002350          593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS  672 (933)
Q Consensus       593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~  672 (933)
                      |++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|..+.                    
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------  473 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------  473 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--------------------
Confidence            999999999999999999999999999999999999999999999999999988876432                    


Q ss_pred             CCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhh
Q 002350          673 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI  752 (933)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  752 (933)
                                                                                ..+|+.||+++|+++|.+|..+
T Consensus       474 ----------------------------------------------------------~~~L~~L~ls~n~l~~~~~~~~  495 (968)
T PLN00113        474 ----------------------------------------------------------SKRLENLDLSRNQFSGAVPRKL  495 (968)
T ss_pred             ----------------------------------------------------------cccceEEECcCCccCCccChhh
Confidence                                                                      1357889999999999999999


Q ss_pred             hhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccCc
Q 002350          753 GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDE  831 (933)
Q Consensus       753 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~  831 (933)
                      +.+++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+..
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999976 45566777


Q ss_pred             ccccCCCCCCCcc
Q 002350          832 SSYRGNPSLCAWL  844 (933)
Q Consensus       832 ~~~~gN~~lc~~~  844 (933)
                      ..+.+|+..+..|
T Consensus       576 l~ls~N~l~~~~p  588 (968)
T PLN00113        576 VNISHNHLHGSLP  588 (968)
T ss_pred             EeccCCcceeeCC
Confidence            7888898766433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.2e-42  Score=345.43  Aligned_cols=491  Identities=27%  Similarity=0.363  Sum_probs=331.4

Q ss_pred             CCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEEC
Q 002350          170 SLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDL  249 (933)
Q Consensus       170 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  249 (933)
                      -|+.|++++|.+....+  .+.++..|.+|++.+|++.. .|.+++.+..++.++.++|+++ .+|+.++.+.+|+.+++
T Consensus        46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccH--hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            34444555554443322  45566666666666666655 4556677777777777777776 56667777777777777


Q ss_pred             CCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCc
Q 002350          250 SHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV  329 (933)
Q Consensus       250 ~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  329 (933)
                      ++|.+..                                                   +|+.++.+..+..++..+|+++
T Consensus       122 s~n~~~e---------------------------------------------------l~~~i~~~~~l~dl~~~~N~i~  150 (565)
T KOG0472|consen  122 SSNELKE---------------------------------------------------LPDSIGRLLDLEDLDATNNQIS  150 (565)
T ss_pred             cccceee---------------------------------------------------cCchHHHHhhhhhhhccccccc
Confidence            7776542                                                   3334444555555566666665


Q ss_pred             ccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCcccc
Q 002350          330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS  409 (933)
Q Consensus       330 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~  409 (933)
                       ..|..++ .+.++..+++.+|++....+... .++.|++||...|.+. .+|+.++. +.+|..|++..|++. ..| .
T Consensus       151 -slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-e  223 (565)
T KOG0472|consen  151 -SLPEDMV-NLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-E  223 (565)
T ss_pred             -cCchHHH-HHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-C
Confidence             4555544 45555555555555555432222 2566666666666665 77777764 777777788887776 455 6


Q ss_pred             ccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCC
Q 002350          410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL  489 (933)
Q Consensus       410 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  489 (933)
                      |..+..|+++.++.|++. .+|++....++++.+||+.+|++. +.|..+.-+++|+.||+++|.++ ..|..++++ .|
T Consensus       224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL  299 (565)
T ss_pred             CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee
Confidence            777788888888888776 777777777888888888888877 45667777777888888888887 567777777 77


Q ss_pred             CEEEccCCcCCCCChhhHhhhcc--ccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEee
Q 002350          490 QVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQ  567 (933)
Q Consensus       490 ~~L~Ls~n~l~~~~p~~l~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~  567 (933)
                      +.|.+.+|++. .+-..+-....  -|++|.=   .+....+..-.+ .+-..-    -...+..|......+.+.|+++
T Consensus       300 ~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~dglS~se~-~~e~~~----t~~~~~~~~~~~~i~tkiL~~s  370 (565)
T KOG0472|consen  300 KFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDDGLSQSEG-GTETAM----TLPSESFPDIYAIITTKILDVS  370 (565)
T ss_pred             eehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccCCCCCCcc-cccccC----CCCCCcccchhhhhhhhhhccc
Confidence            88888888775 33333322111  1222211   011000000000 000000    0111223333356778888888


Q ss_pred             cCcCcccCchhhccCCC---ccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          568 KNALNGLIPGELFRSCK---LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       568 ~n~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +-+++ .+|...+....   ....+++.|++. ++|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+.
T Consensus       371 ~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln  448 (565)
T KOG0472|consen  371 DKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN  448 (565)
T ss_pred             ccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh
Confidence            88887 45665554443   788999999998 78988887777765544444444588999999999999999988886


Q ss_pred             CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhcccee
Q 002350          645 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE  724 (933)
Q Consensus       645 g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  724 (933)
                       .+|..++.+                                                                      
T Consensus       449 -~LP~e~~~l----------------------------------------------------------------------  457 (565)
T KOG0472|consen  449 -DLPEEMGSL----------------------------------------------------------------------  457 (565)
T ss_pred             -hcchhhhhh----------------------------------------------------------------------
Confidence             677665543                                                                      


Q ss_pred             eecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC
Q 002350          725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN  804 (933)
Q Consensus       725 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  804 (933)
                             ..|+.||+|+|+|. .+|+.+..+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .||+.+++++
T Consensus       458 -------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  458 -------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             -------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence                   24778999999998 89999998889999988999999888888999999999999999998 8899999999


Q ss_pred             CCCeEEccCCcCc
Q 002350          805 FLSIFNVSYNNLS  817 (933)
Q Consensus       805 ~L~~L~ls~N~l~  817 (933)
                      +|+.|++++|++.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            9999999999997

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-37  Score=323.24  Aligned_cols=371  Identities=23%  Similarity=0.273  Sum_probs=263.5

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350          368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  447 (933)
Q Consensus       368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  447 (933)
                      +.|++++|.+. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++..+....++.|+.|||+
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence            44666666665 344444445666666666666665 55554444455666666666666 4444445566666667777


Q ss_pred             CCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCC
Q 002350          448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN  527 (933)
Q Consensus       448 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~  527 (933)
                      .|.++.+....|..-.++++|+|++|+|+..-...|..+.+|..|.|++|+++..-+..+.+++. |+.|+|..|++.-.
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch-hhhhhccccceeee
Confidence            66666655555655566777777777777666666777777777777777777333344444666 77777777777643


Q ss_pred             cchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcC
Q 002350          528 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH  606 (933)
Q Consensus       528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  606 (933)
                      --..|.++++|+.|.+..|.+...-...| .+.++++|+|+.|++...-..++.++++|+.|++|+|.|...-++.+..+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            34567888888888888888877776666 78888888888888887777888888888888888888887778888888


Q ss_pred             CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCC
Q 002350          607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN  686 (933)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (933)
                      ++|++|+|++|+++...+++|..+..|+.|.|++|+++..-...|                                   
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af-----------------------------------  361 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF-----------------------------------  361 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-----------------------------------
Confidence            888888888888888778888888888888888888762111111                                   


Q ss_pred             CCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCCh---hhhhccccCeeec
Q 002350          687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS---DIGQLQAILALNL  763 (933)
Q Consensus       687 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~L  763 (933)
                                                                ..+++|+.|||++|.+++.|-+   .|..|++|+.|+|
T Consensus       362 ------------------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  362 ------------------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             ------------------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence                                                      1234677788888888765543   4666888888888


Q ss_pred             cccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccC
Q 002350          764 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT  820 (933)
Q Consensus       764 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~  820 (933)
                      .+|++..+...+|.++.+||+|||-+|.|..+-|.+|..+ .|+.|-+..-.+-+.+
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence            8888887667788888888888888888888888888888 7777777655554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=320.34  Aligned_cols=363  Identities=24%  Similarity=0.247  Sum_probs=293.8

Q ss_pred             EEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccC
Q 002350          222 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK  301 (933)
Q Consensus       222 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~  301 (933)
                      .||+++|.++...+..|.++++|+.+++.+|.++ .+|.  +                        .....+++.|+|.+
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f------------------------~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--F------------------------GHESGHLEKLDLRH  134 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--c------------------------cccccceeEEeeec
Confidence            4555555555555555555555555555555554 2221  0                        01122355555555


Q ss_pred             CCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCC
Q 002350          302 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL  381 (933)
Q Consensus       302 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  381 (933)
                      |.++..-.+.+.-++.|+.||||.|.++ .+|..-+..-.++++|+|++|+|+.+....|..+.+|..|.|+.|+++ .+
T Consensus       135 N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tL  212 (873)
T KOG4194|consen  135 NLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TL  212 (873)
T ss_pred             cccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-cc
Confidence            5555555567778888999999999988 666654545568999999999999998888999999999999999999 89


Q ss_pred             ChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcc
Q 002350          382 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN  461 (933)
Q Consensus       382 p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  461 (933)
                      |...|+.+++|+.|+|..|.+.-.--..|.++++|+.|.+.+|.+. .+....|.++.++++|+|+.|++...-..++.+
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccc
Confidence            9999888999999999999987544667899999999999999998 677788889999999999999999888888889


Q ss_pred             cCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEE
Q 002350          462 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL  541 (933)
Q Consensus       462 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  541 (933)
                      ++.|+.|++++|.|...-++++...++|++|+|++|+++..-+..+..+.. |++|+|++|++...-...|..+++|+.|
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            999999999999999888888888999999999999999666667777766 9999999999987777789999999999


Q ss_pred             EccCCcCccccCcc---c-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC
Q 002350          542 DISENRLSGPIASS---L-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG  616 (933)
Q Consensus       542 ~Ls~n~l~~~~~~~---~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  616 (933)
                      ||++|.++..+...   + ++++|+.|++.+|++..+...+|.+++.|++|||.+|.|..+-|++|..+ .|++|.+..
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            99999998765543   3 78899999999999987777888999999999999999988888888887 888887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.6e-39  Score=326.29  Aligned_cols=477  Identities=25%  Similarity=0.354  Sum_probs=377.5

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL  196 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  196 (933)
                      ..|+.|++++|.+....     +.+.++..|.+|++++|++. ..|.+++.+..++.|+.++|++... | ..+..+.+|
T Consensus        45 v~l~~lils~N~l~~l~-----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p-~~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLR-----EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-P-EQIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhhcc-----HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-c-HHHhhhhhh
Confidence            35788999999876433     56888999999999999987 5677888999999999999988744 3 468888889


Q ss_pred             CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccc
Q 002350          197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST  276 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  276 (933)
                      +.++.++|.+.. +|+.++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|.+.. .|...+. +          
T Consensus       117 ~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m----------  182 (565)
T KOG0472|consen  117 VKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-M----------  182 (565)
T ss_pred             hhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-H----------
Confidence            999999988876 6677888888999998888888 678888888888889998888873 3323222 3          


Q ss_pred             ccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCc
Q 002350          277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI  356 (933)
Q Consensus       277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  356 (933)
                                     +.|++|+...|-++ .+|+.++.+.+|..|+|.+|++. .+|+  |.+|..|.+++++.|.+..+
T Consensus       183 ---------------~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~l  243 (565)
T KOG0472|consen  183 ---------------KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEML  243 (565)
T ss_pred             ---------------HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhh
Confidence                           34555666666555 78999999999999999999998 7884  34899999999999999887


Q ss_pred             CcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhc
Q 002350          357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT  436 (933)
Q Consensus       357 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  436 (933)
                      +......++++..||+.+|+++ +.|++++. +.+|++||+++|.++ ..|.+++++ .|+.|-+.+|.+. .+-.++..
T Consensus       244 pae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~  318 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIIS  318 (565)
T ss_pred             HHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHc
Confidence            5555568899999999999998 89999975 899999999999998 678899999 9999999999886 34333322


Q ss_pred             CCC--CCCEE-------ECcCCcC--------CCcCchhhcccCcCCeEEccCccccccccccccCCC---CCCEEEccC
Q 002350          437 GCF--SLELL-------DLSNNNF--------EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST---SLQVLDISN  496 (933)
Q Consensus       437 ~l~--~L~~L-------~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~Ls~  496 (933)
                      +-+  -|++|       .++...=        ............+.+.|++++-+++ .+|+......   -....++++
T Consensus       319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEeccc
Confidence            111  01111       1111100        0011112234567889999999998 5565443333   378899999


Q ss_pred             CcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCc
Q 002350          497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP  576 (933)
Q Consensus       497 n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p  576 (933)
                      |++. ++|..+..+..-.+.+.+++|.+. -+|..++.+++|..|++++|.+...+.+.+.+..|+.|+++.|++. .+|
T Consensus       398 NqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP  474 (565)
T KOG0472|consen  398 NQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLP  474 (565)
T ss_pred             chHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cch
Confidence            9998 899888887774455666666655 7888999999999999999988766656668888999999999997 678


Q ss_pred             hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      ........++.+-.++|++....|..+.++.+|++|||.+|.+. .+|..+++|++|++|++.+|+|.
T Consensus       475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88888888999999999999777777999999999999999998 78999999999999999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=327.16  Aligned_cols=313  Identities=26%  Similarity=0.282  Sum_probs=149.6

Q ss_pred             CchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhh
Q 002350          308 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV  387 (933)
Q Consensus       308 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  387 (933)
                      .|..+..+.+|+.|+++.|.+. .+|..+. .+..++.+..++|.....    ++.. .++.+++..|.+.+.++.++..
T Consensus       106 lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~  178 (1081)
T KOG0618|consen  106 LPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYN  178 (1081)
T ss_pred             CchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhh
Confidence            4555555666666666666665 5555544 455555555665511110    1111 1566666666666666665542


Q ss_pred             cCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCe
Q 002350          388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRH  467 (933)
Q Consensus       388 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  467 (933)
                       +..  .|+|.+|.+.   -..+..+.+|+.|....|++. .+.    -.-++|+.|+.++|.++...+.  ....+|++
T Consensus       179 -l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~  245 (1081)
T KOG0618|consen  179 -LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQY  245 (1081)
T ss_pred             -hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--ccccccee
Confidence             333  4777777654   123445666666666666654 111    1234555666666655522211  12334555


Q ss_pred             EEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCc
Q 002350          468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR  547 (933)
Q Consensus       468 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  547 (933)
                      ++++.|+++ .+|.++..+.+|+.++..+|.++ .+|..+....+ |+.|.+..|.+. .+|.....++.|++|+|..|+
T Consensus       246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS-LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh-HHHHHhhhhhhh-hCCCcccccceeeeeeehhcc
Confidence            555555555 33455555555555555555553 45555544444 555555555555 344444445555555555555


Q ss_pred             CccccCccc-c-CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch
Q 002350          548 LSGPIASSL-N-LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD  625 (933)
Q Consensus       548 l~~~~~~~~-~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  625 (933)
                      +....+..+ . ..+|+.|..+.|++.......=...+.|+.|.+.+|.++...-..+.+.+.|+.|+|++|++......
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence            543333222 1 11244444444444322111111223344444444444433333344444444444444444432223


Q ss_pred             hhhcCCCCCEEEccCCcCC
Q 002350          626 QLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       626 ~l~~l~~L~~L~Ls~N~l~  644 (933)
                      .+.++..|+.|+||+|+++
T Consensus       402 ~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             HHhchHHhHHHhcccchhh
Confidence            3444444444444444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=7.1e-35  Score=324.57  Aligned_cols=462  Identities=30%  Similarity=0.377  Sum_probs=315.3

Q ss_pred             CCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEcc
Q 002350          147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS  226 (933)
Q Consensus       147 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  226 (933)
                      ++.|+++.|.+-..+...+.+..+|+.||+++|++... | ..++.+.+|+.|+++.|.|.. .|.+..++.+|++|.|.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p-~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-P-IQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccccC-C-chhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheec
Confidence            44444444443332233333333344444444444322 1 234444555555555554443 33444455555555555


Q ss_pred             CCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCC
Q 002350          227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG  306 (933)
Q Consensus       227 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  306 (933)
                      .|.+. ..|..+..+++|++|++++|.+. .+| ..+..+..++.+..++|..+....      -..++.+++..+.+.+
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~lg------~~~ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQRLG------QTSIKKLDLRLNVLGG  170 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhhhc------cccchhhhhhhhhccc
Confidence            55444 44555555555555555555543 233 233334444444444331111111      1126677777887877


Q ss_pred             CCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhh
Q 002350          307 SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMG  386 (933)
Q Consensus       307 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  386 (933)
                      .++..+..+.+  .|+|++|.+. ...   ...+++|+.+....|++..+..    .-++|+.|+.+.|.++...+..  
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~p--  238 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVHP--  238 (1081)
T ss_pred             chhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecccc--
Confidence            77777776666  6999999876 222   2377889999999998876532    4567899999999987332222  


Q ss_pred             hcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCC
Q 002350          387 VILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR  466 (933)
Q Consensus       387 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  466 (933)
                       ...+|++++++.|.++ .+|.+++.+.+|+.++..+|.++ .+|..++ ...+|+.|.+..|.+.. +|......++|+
T Consensus       239 -~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~y-ip~~le~~~sL~  313 (1081)
T KOG0618|consen  239 -VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEY-IPPFLEGLKSLR  313 (1081)
T ss_pred             -ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhh-CCCcccccceee
Confidence             2578999999999998 56799999999999999999996 7777664 67789999999998875 455566789999


Q ss_pred             eEEccCccccccccccc-cCCC-CCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEcc
Q 002350          467 HLYFENNNFSGKIKDGL-LSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS  544 (933)
Q Consensus       467 ~L~L~~n~l~~~~~~~l-~~l~-~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  544 (933)
                      +|+|..|++. ..|+.+ .... +|..|..+.|++. ..|..=....+.|+.|++.+|.++...-..+.+.+.|+.|+|+
T Consensus       314 tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  314 TLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             eeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            9999999998 444433 3333 3777888888886 4453322333349999999999998888889999999999999


Q ss_pred             CCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC
Q 002350          545 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI  623 (933)
Q Consensus       545 ~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  623 (933)
                      +|++.......+ ++..|++|+|++|+++ .+|.....+..|++|...+|++. .+| .+..++.|+.+|++.|+++...
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence            999976666666 8999999999999998 56899999999999999999998 788 7888999999999999998553


Q ss_pred             -chhhhcCCCCCEEEccCCcC
Q 002350          624 -PDQLCQLQKLAMMDLSRNKF  643 (933)
Q Consensus       624 -p~~l~~l~~L~~L~Ls~N~l  643 (933)
                       |... .-++|++||+++|.-
T Consensus       469 l~~~~-p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  469 LPEAL-PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhC-CCcccceeeccCCcc
Confidence             3333 238999999999984

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.9e-33  Score=294.66  Aligned_cols=347  Identities=26%  Similarity=0.370  Sum_probs=286.4

Q ss_pred             CcceEEEccCCCCC-CCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEE
Q 002350          292 SQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL  370 (933)
Q Consensus       292 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  370 (933)
                      +-.+-.++++|.++ +.+|....++++++.|.|...++. .+|+.+. .+.+|+.|.+++|++..+. ..++.++.|+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv   83 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVH-GELSDLPRLRSV   83 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhh-hhhccchhhHHH
Confidence            34456788899998 578999999999999999999997 8999886 8999999999999988763 446788999999


Q ss_pred             EccCCcCCC-CCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCC
Q 002350          371 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN  449 (933)
Q Consensus       371 ~Ls~n~l~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  449 (933)
                      ++..|++.. -+|..+|. +..|+.||||+|++. +.|..+...+++-+|+||+|+|. .||..+|.++..|-.|||++|
T Consensus        84 ~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             hhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence            999999864 48888986 999999999999998 78999999999999999999998 899999999999999999999


Q ss_pred             cCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC-CCChhhHhhhccccceeecCCCcCCCCc
Q 002350          450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMGNFSSELEILSMSKNHLEGNV  528 (933)
Q Consensus       450 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~~~~~L~~L~L~~n~l~~~~  528 (933)
                      ++. ..|+.+..+..|++|+|++|.+.-..-..+-.+++|++|.+++.+-+ ..+|.++..+.. |..++++.|.+. ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhhccccccCCC-cc
Confidence            997 56777888999999999999887544455666788889999886543 467888888776 999999999998 78


Q ss_pred             chhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcc-cCchhhhcCC
Q 002350          529 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG-RIPHQINEHS  607 (933)
Q Consensus       529 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~  607 (933)
                      |+.+.++++|+.|+||+|+++......-...+|++|++++|+++ .+|..+.++++|+.|.+.+|+++- -+|..++.+.
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            99999999999999999998765443335667888888888886 567888888888888888887762 3677788888


Q ss_pred             CccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCch
Q 002350          608 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC  650 (933)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~  650 (933)
                      +|+++..++|.+. ..|+.++.|..|+.|.|++|++. .+|+.
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea  357 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA  357 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence            8888888777776 67777887777777777777765 44443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-32  Score=292.47  Aligned_cols=363  Identities=24%  Similarity=0.390  Sum_probs=208.4

Q ss_pred             CCccEEEccCCcCC-CCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCE
Q 002350          365 DFLHHLDISCNNFR-GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL  443 (933)
Q Consensus       365 ~~L~~L~Ls~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  443 (933)
                      +..+-+|+++|.++ +..|..+.. ++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+... .+.++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHH
Confidence            34455556666655 345555543 666666666666555 56666666666666666666654 22222 245566666


Q ss_pred             EECcCCcCCC-cCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCC
Q 002350          444 LDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN  522 (933)
Q Consensus       444 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n  522 (933)
                      +++.+|++.. -+|..+..+..|+.|||++|++. ..|..+...+++-+|+|++|+|. .||..++-....|-.|+|++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence            6666665542 24445556666666666666666 55666666666666666666665 555544332222666666666


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCc-ccCchhhccCCCccEEeCcCCcCcccCc
Q 002350          523 HLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN-GLIPGELFRSCKLVTLNLRDNTFSGRIP  600 (933)
Q Consensus       523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  600 (933)
                      ++. .+|..+..+..|++|+|++|.+.-..-..+ .+++|++|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            666 455566666666666666666543221222 4556666666654321 235666666666666677766666 566


Q ss_pred             hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhh
Q 002350          601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE  680 (933)
Q Consensus       601 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  680 (933)
                      +.+-++++|+.|+|++|+++ .+........+|++|++|+|+++ .+|+++..++                         
T Consensus       239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-------------------------  291 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT-------------------------  291 (1255)
T ss_pred             HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH-------------------------
Confidence            66666666677777777666 34444555566666667777666 5666555443                         


Q ss_pred             cccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC-CCChhhhhccccC
Q 002350          681 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAIL  759 (933)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~  759 (933)
                                                                          .|+.|.+.+|+++- -||..||.|..|+
T Consensus       292 ----------------------------------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  292 ----------------------------------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             ----------------------------------------------------HHHHHHhccCcccccCCccchhhhhhhH
Confidence                                                                23334444454432 2555555555555


Q ss_pred             eeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350          760 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL  816 (933)
Q Consensus       760 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  816 (933)
                      ++..++|.+. ..|+++..+..|+.|.|++|++. .+|+.+.-|+.|+.||+..|+-
T Consensus       320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            5555555555 55555555555555555555555 4555555555555555555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-27  Score=241.83  Aligned_cols=421  Identities=19%  Similarity=0.202  Sum_probs=282.2

Q ss_pred             CCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCC-CcCCCCcchhhhcC
Q 002350          359 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR-NYFSGGLSQSVVTG  437 (933)
Q Consensus       359 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~  437 (933)
                      +|..-.+.-.+++|..|+|+ .+|+..|..+++|+.|||++|.|+.+-|.+|..+++|..|.+.+ |+|+ .+|...|.+
T Consensus        61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g  138 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG  138 (498)
T ss_pred             CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence            44444455678888899988 88888888899999999999999999999999999998888877 7887 899999999


Q ss_pred             CCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCC------------CChh
Q 002350          438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------------HIPH  505 (933)
Q Consensus       438 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~p~  505 (933)
                      +.+|+.|.+.-|++.-.....|..++++..|.+.+|.+...-...+..+.+++.+.+..|.+..            ..|.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            9999999999999998888999999999999999999984444478889999999999887431            1111


Q ss_pred             hHhhhccccceeecCCCcCCCCcchhccCC-CCCCEEEccCCcCccccCc-cc-cCCCCceEEeecCcCcccCchhhccC
Q 002350          506 WMGNFSSELEILSMSKNHLEGNVPVQLNNL-ERLRILDISENRLSGPIAS-SL-NLSSVEHLSLQKNALNGLIPGELFRS  582 (933)
Q Consensus       506 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~~~l  582 (933)
                      .++.... ..-..+.+.++..+.+..|... ..+..--.+.+...+..|. +| .+++|+.|+|++|+++++-+.+|.+.
T Consensus       219 etsgarc-~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  219 ETSGARC-VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             hccccee-cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            1111111 2233344444443334333322 2222212223333344443 34 78999999999999999889999999


Q ss_pred             CCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCC
Q 002350          583 CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD  662 (933)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~  662 (933)
                      ..++.|.|..|++...-...|.++..|+.|+|++|+|+-.-|.+|..+.+|..|.+-.|++...-  .+..+..|.....
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC--~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC--RLAWLGEWLRKKS  375 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc--chHHHHHHHhhCC
Confidence            99999999999998777778889999999999999999888999999999999999999886321  1233333333222


Q ss_pred             CccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcc-cEEEcCC
Q 002350          663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV-TGLDLSC  741 (933)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~LdLs~  741 (933)
                       .......+.+....++++.+...-+..-   +.             +++...      .....-...++-+ ++...|+
T Consensus       376 -~~~~~~Cq~p~~~~~~~~~dv~~~~~~c---~~-------------~ee~~~------~~s~~cP~~c~c~~tVvRcSn  432 (498)
T KOG4237|consen  376 -VVGNPRCQSPGFVRQIPISDVAFGDFRC---GG-------------PEELGC------LTSSPCPPPCTCLDTVVRCSN  432 (498)
T ss_pred             -CCCCCCCCCCchhccccchhcccccccc---CC-------------ccccCC------CCCCCCCCCcchhhhhHhhcc
Confidence             3344455555555555443321100000   00             000000      0000000111112 2345566


Q ss_pred             CcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350          742 NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  814 (933)
Q Consensus       742 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  814 (933)
                      +.++ .+|..+.  .....|++.+|.++ .+|..  .+++| .+|+|+|+++..--..|.+++.|.+|-||||
T Consensus       433 k~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  433 KLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            6655 5555544  24556777777777 55555  56666 7777777777666667777777777777776

>PLN03210 Resistant to P

Probab=99.89  E-value=5.1e-22  Score=249.96  Aligned_cols=338  Identities=20%  Similarity=0.210  Sum_probs=184.5

Q ss_pred             cccCCCccEEEccCCc------CCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhh
Q 002350          361 KAKHDFLHHLDISCNN------FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV  434 (933)
Q Consensus       361 ~~~~~~L~~L~Ls~n~------l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  434 (933)
                      |..+++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|++. .++..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~  630 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV  630 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence            3344555555553332      122344444332334555555555544 344444 3455555555555554 333322


Q ss_pred             hcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcccc
Q 002350          435 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL  514 (933)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L  514 (933)
                       ..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++.+ |
T Consensus       631 -~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L  706 (1153)
T PLN03210        631 -HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-L  706 (1153)
T ss_pred             -ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-C
Confidence             345555555555544333333 24445555555555554444555555555555555555554333444433 2333 5


Q ss_pred             ceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcC-------cccCchhhccCCCccE
Q 002350          515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL-------NGLIPGELFRSCKLVT  587 (933)
Q Consensus       515 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l-------~~~~p~~~~~l~~L~~  587 (933)
                      +.|++++|...+.+|..   ..+|+.|++++|.+. .+|..+.+++|++|.+.++..       ....+..+...++|+.
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            55555555444333322   234555556555543 233333455555555544321       1111222233456777


Q ss_pred             EeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCC
Q 002350          588 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG  667 (933)
Q Consensus       588 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~  667 (933)
                      |++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..                 
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------  844 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------  844 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence            7777776666677777777777777777765555666555 5677777777776543333321                 


Q ss_pred             CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350          668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE  747 (933)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  747 (933)
                                                                                     ..+++.|+|++|.++ .
T Consensus       845 ---------------------------------------------------------------~~nL~~L~Ls~n~i~-~  860 (1153)
T PLN03210        845 ---------------------------------------------------------------STNISDLNLSRTGIE-E  860 (1153)
T ss_pred             ---------------------------------------------------------------ccccCEeECCCCCCc-c
Confidence                                                                           124666888888887 6


Q ss_pred             CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCe
Q 002350          748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK  791 (933)
Q Consensus       748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  791 (933)
                      +|..++.+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            78888888888888888743333577777888888888888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.9e-21  Score=243.14  Aligned_cols=342  Identities=20%  Similarity=0.209  Sum_probs=270.9

Q ss_pred             ccCCCCCCCcceEEEccCCC------CCCCCchhhhCCC-CCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCc
Q 002350          284 KTENWLPTSQLIVLGLTKCN------LNGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI  356 (933)
Q Consensus       284 ~~~~~~~~~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  356 (933)
                      ...+|..+.+|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+  ...+|+.|++.+|.+..+
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccc
Confidence            34467788888888886553      2234566666654 6999999999886 788765  578999999999998876


Q ss_pred             CcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhc
Q 002350          357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT  436 (933)
Q Consensus       357 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  436 (933)
                      . .....+++|+.|+++++.....+|. + ..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|...  
T Consensus       627 ~-~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--  701 (1153)
T PLN03210        627 W-DGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--  701 (1153)
T ss_pred             c-cccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--
Confidence            3 3356789999999998875557775 3 348999999999998777899999999999999999987666787654  


Q ss_pred             CCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCC------CChhhHhhh
Q 002350          437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------HIPHWMGNF  510 (933)
Q Consensus       437 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~~  510 (933)
                      .+++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+ .+++|++|.+.++....      .++......
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence            6889999999999766555543   468999999999987 566654 57888989888754210      111222223


Q ss_pred             ccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeC
Q 002350          511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL  590 (933)
Q Consensus       511 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  590 (933)
                      +++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|....+++|+.|++++|.....+|..   .++|+.|+|
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            34599999999988888999999999999999999977777787778999999999998766566543   368999999


Q ss_pred             cCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCc
Q 002350          591 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK  642 (933)
Q Consensus       591 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  642 (933)
                      ++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999998 689999999999999999965555688888999999999999885

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1.3e-23  Score=213.72  Aligned_cols=398  Identities=21%  Similarity=0.236  Sum_probs=205.4

Q ss_pred             EECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCC-CcCCCCCChhhhhcCCCCceEecccc
Q 002350          199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH-NNFEGMFPLSSLANHSKLEGLLLSTR  277 (933)
Q Consensus       199 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~L~L~~~  277 (933)
                      ++|..|+|+...+.+|+.+++|+.||||+|+|+.+.|.+|.++.+|..|-+.+ |+|+ .+|...|+++..++.      
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr------  144 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR------  144 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH------
Confidence            34444444444444455555555555555555544455555554444443333 4443 233333333333322      


Q ss_pred             cCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcC
Q 002350          278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL  357 (933)
Q Consensus       278 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  357 (933)
                                         |.+.-|++.-...+.|..++++..|.+.+|.+. .++...+..+..++.+++..|.+....
T Consensus       145 -------------------LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  145 -------------------LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             -------------------HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc
Confidence                               223333333334455666666666666666665 555544455666666666666532221


Q ss_pred             ------------cCCcccCCCccEEEccCCcCCCCCChhhh-hcCCCccEEEccCCCCCCCcc-ccccCCCCCCEEEcCC
Q 002350          358 ------------QLPKAKHDFLHHLDISCNNFRGKLPHNMG-VILQKLMYMDISKNCFEGNIP-YSAGEMKELSLLDLSR  423 (933)
Q Consensus       358 ------------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~  423 (933)
                                  ++.++......-..+.+.++. .++..-+ .....+..--.+.+...+..| ..|..+++|+.|+|++
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                        111223333333334444443 2222221 111122111222332333333 3467788888888888


Q ss_pred             CcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCC-
Q 002350          424 NYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH-  502 (933)
Q Consensus       424 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-  502 (933)
                      |+++ .+....|.+...+++|.|..|++.......|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|++.-. 
T Consensus       284 N~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  284 NKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             Cccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            8887 56666777888888888888888776667778888888888888888877888888888888888887776421 


Q ss_pred             ChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc---ccCcc----------ccCCCCceEEeecC
Q 002350          503 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG---PIASS----------LNLSSVEHLSLQKN  569 (933)
Q Consensus       503 ~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~----------~~l~~L~~L~L~~n  569 (933)
                      -..|++...        .+....|..|  -+.-..++.+.+++..+..   ..|+.          -.++-+.++.=-.|
T Consensus       363 ~l~wl~~Wl--------r~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn  432 (498)
T KOG4237|consen  363 RLAWLGEWL--------RKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN  432 (498)
T ss_pred             chHHHHHHH--------hhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence            112222221        1111111111  0111123333333332211   01110          02333433322223


Q ss_pred             cCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350          570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  641 (933)
Q Consensus       570 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  641 (933)
                      +....+|..+.  ..-..|++.+|.++ .+|..  .+.+| .+++++|++...--..|.++++|.+|-|++|
T Consensus       433 k~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  433 KLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            33334444332  14556777777777 55555  44566 7788888877555667777777777777765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.1e-21  Score=223.46  Aligned_cols=194  Identities=24%  Similarity=0.299  Sum_probs=108.5

Q ss_pred             CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350          415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  494 (933)
Q Consensus       415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  494 (933)
                      .-..|+++.+.++ .+|..+.   ++|+.|++.+|+++. +|.   .+++|++|++++|+++ .+|..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence            3567888888887 6776553   367788888887775 332   2467777777777776 34432   356777777


Q ss_pred             cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350          495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL  574 (933)
Q Consensus       495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~  574 (933)
                      ++|.++ .+|..    +..|+.|++++|+++. +|.   ..++|+.|++++|++++. |..  ..+|+.|++++|.+++ 
T Consensus       270 s~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        270 FSNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             cCCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC--cccccccccccCcccc-
Confidence            777765 44432    2336677777777663 343   235566677776666543 221  2345555666666553 


Q ss_pred             CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +|..   ..+|++|+|++|++++ +|..   ..+|+.|++++|++++ +|...   .+|+.|++++|+++
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt  395 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLT  395 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cccceEEecCCccc
Confidence            2321   1245555666555552 3322   1345555555555552 34321   34555555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=5.7e-21  Score=222.23  Aligned_cols=215  Identities=22%  Similarity=0.286  Sum_probs=143.7

Q ss_pred             CCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350          390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY  469 (933)
Q Consensus       390 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  469 (933)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|.    ..++|++|++++|+++.. |.   ..++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceee
Confidence            34567888888877 5666654  46888888888877 4554    356788888888887753 32   246778888


Q ss_pred             ccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 002350          470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS  549 (933)
Q Consensus       470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (933)
                      +++|.++ .+|..   ..+|+.|++++|+++ .+|..    +.+|+.|++++|++++ +|..   ..+|+.|++++|+++
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            8888876 34432   256778888888877 45542    2348888888888874 3432   235777788888876


Q ss_pred             cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350          550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  629 (933)
Q Consensus       550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  629 (933)
                      + +|..  ..+|++|+|++|++++ +|..   ..+|+.|++++|++++ +|...   .+|+.|++++|++++ +|..   
T Consensus       336 ~-LP~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt~-LP~l---  400 (788)
T PRK15387        336 S-LPTL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLTS-LPVL---  400 (788)
T ss_pred             c-cccc--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cccceEEecCCcccC-CCCc---
Confidence            5 3322  2467888888888875 3432   2467778888888873 56432   467888888888874 5543   


Q ss_pred             CCCCCEEEccCCcCC
Q 002350          630 LQKLAMMDLSRNKFS  644 (933)
Q Consensus       630 l~~L~~L~Ls~N~l~  644 (933)
                      .++|+.|++++|+++
T Consensus       401 ~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        401 PSELKELMVSGNRLT  415 (788)
T ss_pred             ccCCCEEEccCCcCC
Confidence            246777777777776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=7.1e-19  Score=206.55  Aligned_cols=229  Identities=20%  Similarity=0.339  Sum_probs=127.8

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEE
Q 002350          366 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD  445 (933)
Q Consensus       366 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  445 (933)
                      +...|+++++.++ .+|..+   .+.|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence            4567888888887 677654   357888888888877 4555443  47788888887776 5665432   3567777


Q ss_pred             CcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCC
Q 002350          446 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE  525 (933)
Q Consensus       446 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~  525 (933)
                      +++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|++++|+++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc
Confidence            7777666 3344332  35666666666665 3444332  35666666666555 3443221   22555555555554


Q ss_pred             CCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhc
Q 002350          526 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE  605 (933)
Q Consensus       526 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  605 (933)
                      . +|..+.  ++                       |+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. 
T Consensus       318 ~-LP~~l~--~s-----------------------L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        318 A-LPETLP--PG-----------------------LKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             c-CCcccc--cc-----------------------ceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence            2 222211  23                       4444444444432 233222  45666666666665 3454442 


Q ss_pred             CCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350          606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF  651 (933)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~  651 (933)
                       ++|++|+|++|+++ .+|..+.  ..|+.|++++|+++ .+|..+
T Consensus       367 -~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        367 -PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             -CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence             45666666666666 3444443  24666666666665 455444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.5e-18  Score=203.78  Aligned_cols=207  Identities=24%  Similarity=0.407  Sum_probs=118.6

Q ss_pred             CCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350          390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY  469 (933)
Q Consensus       390 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  469 (933)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|..++   ++|++|++++|.++.                
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts----------------  234 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS----------------  234 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc----------------
Confidence            34567777777776 4554442  45677777777666 4554332   345555555554442                


Q ss_pred             ccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 002350          470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS  549 (933)
Q Consensus       470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (933)
                               +|..+.  .+|+.|++++|.+. .+|..+.   .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       235 ---------LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        235 ---------IPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             ---------CChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence                     233221  24566666666655 4554432   23666666666666 3444332  36677777777665


Q ss_pred             cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350          550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  629 (933)
Q Consensus       550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  629 (933)
                      +. |..+ .++|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+. 
T Consensus       297 ~L-P~~l-p~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-  366 (754)
T PRK15370        297 TL-PAHL-PSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-  366 (754)
T ss_pred             cC-cccc-hhhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence            43 2211 2356667777777664 343332  467777777777764 565553  57777777777776 3555543 


Q ss_pred             CCCCCEEEccCCcCCCCCCc
Q 002350          630 LQKLAMMDLSRNKFSGSIPP  649 (933)
Q Consensus       630 l~~L~~L~Ls~N~l~g~~p~  649 (933)
                       ++|+.|++++|+++ .+|.
T Consensus       367 -~~L~~LdLs~N~Lt-~LP~  384 (754)
T PRK15370        367 -PTITTLDVSRNALT-NLPE  384 (754)
T ss_pred             -CCcCEEECCCCcCC-CCCH
Confidence             56777777777766 3443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=6e-19  Score=193.46  Aligned_cols=282  Identities=23%  Similarity=0.280  Sum_probs=143.7

Q ss_pred             EEECcCCcCC-CcCchhhcccCcCCeEEccCcccccc----ccccccCCCCCCEEEccCCcCCCCChhhHhhhcccccee
Q 002350          443 LLDLSNNNFE-GQFFSEYMNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL  517 (933)
Q Consensus       443 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L  517 (933)
                      .|+|..+.++ ......+..+++|+.++++++.+++.    ++..+...+.+++++++++.+.+ .+..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence            3566666665 23334445566677777777766432    33344555666667666665542 11110          


Q ss_pred             ecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cC---CCCceEEeecCcCcc----cCchhhccC-CCccEE
Q 002350          518 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NL---SSVEHLSLQKNALNG----LIPGELFRS-CKLVTL  588 (933)
Q Consensus       518 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l---~~L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L  588 (933)
                              ..++..+..+++|+.|++++|.+.+..+..+ .+   ++|++|++++|++.+    .+...+..+ ++|+.|
T Consensus        71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L  142 (319)
T cd00116          71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL  142 (319)
T ss_pred             --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence                    0112233334444444444444433222222 11   225555555554442    122233444 566666


Q ss_pred             eCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCC----CchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccC
Q 002350          589 NLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG  660 (933)
Q Consensus       589 ~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~  660 (933)
                      ++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+...      
T Consensus       143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~------  216 (319)
T cd00116         143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET------  216 (319)
T ss_pred             EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH------
Confidence            6666666532    233445556666666666666632    23334455567777777666653221111110      


Q ss_pred             CCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcC
Q 002350          661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS  740 (933)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  740 (933)
                                                                                         ...+++|+.||++
T Consensus       217 -------------------------------------------------------------------~~~~~~L~~L~ls  229 (319)
T cd00116         217 -------------------------------------------------------------------LASLKSLEVLNLG  229 (319)
T ss_pred             -------------------------------------------------------------------hcccCCCCEEecC
Confidence                                                                               0123456667777


Q ss_pred             CCcCCCCCChhhhh-----ccccCeeeccccccc----cccchhccCCCCCCEEECcCCeeccc----CCcCCcCC-CCC
Q 002350          741 CNQLTGEIPSDIGQ-----LQAILALNLSNNSLS----GSIPESFSNLKMIESLDISYNKLTGQ----IPPQLTAL-NFL  806 (933)
Q Consensus       741 ~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L  806 (933)
                      +|.+++..+..+..     .+.|+.|++++|.++    ..+...+..+++|+.+|+++|.++..    +...+... +.|
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~  309 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL  309 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence            77666533333322     256777777777765    22344556667777777777777643    33334444 567


Q ss_pred             CeEEccCCcC
Q 002350          807 SIFNVSYNNL  816 (933)
Q Consensus       807 ~~L~ls~N~l  816 (933)
                      +.+++.+|++
T Consensus       310 ~~~~~~~~~~  319 (319)
T cd00116         310 ESLWVKDDSF  319 (319)
T ss_pred             hhcccCCCCC
Confidence            7777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=7.5e-18  Score=184.76  Aligned_cols=253  Identities=24%  Similarity=0.257  Sum_probs=117.1

Q ss_pred             CCCccEEEccCCCCCCC----ccccccCCCCCCEEEcCCCcCCC--C---cchhhhcCCCCCCEEECcCCcCCCcCchhh
Q 002350          389 LQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSG--G---LSQSVVTGCFSLELLDLSNNNFEGQFFSEY  459 (933)
Q Consensus       389 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~--~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  459 (933)
                      +++|++++++++.++..    ++..+...+.++.++++++.+.+  .   .....+..+++|+.|++++|.+.+..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            44455555555544321    22333344445555555554431  0   000122334455555555555544333333


Q ss_pred             cccCc---CCeEEccCccccc----cccccccCC-CCCCEEEccCCcCCCCCh----hhHhhhccccceeecCCCcCCCC
Q 002350          460 MNLTR---LRHLYFENNNFSG----KIKDGLLSS-TSLQVLDISNNMLSGHIP----HWMGNFSSELEILSMSKNHLEGN  527 (933)
Q Consensus       460 ~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~~p----~~l~~~~~~L~~L~L~~n~l~~~  527 (933)
                      ..+.+   |++|++++|++++    .+...+..+ ++|++|++++|.+++..+    ..+..+.. |+.|++++|.+++.
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~  180 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD-LKELNLANNGIGDA  180 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC-cCEEECcCCCCchH
Confidence            33333   5555555555542    112223334 555666666665553222    12222223 55566655555532


Q ss_pred             ----cchhccCCCCCCEEEccCCcCccccC----ccc-cCCCCceEEeecCcCcccCchhhcc-----CCCccEEeCcCC
Q 002350          528 ----VPVQLNNLERLRILDISENRLSGPIA----SSL-NLSSVEHLSLQKNALNGLIPGELFR-----SCKLVTLNLRDN  593 (933)
Q Consensus       528 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~-~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N  593 (933)
                          ++..+..+++|+.|++++|.+.+...    ..+ .+++|++|++++|.+++.....+..     .+.|+.|++++|
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence                22233444556666666665543221    112 3455566666655554322222211     256666666666


Q ss_pred             cCcc----cCchhhhcCCCccEEEcCCCcCCCC----CchhhhcC-CCCCEEEccCCc
Q 002350          594 TFSG----RIPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQL-QKLAMMDLSRNK  642 (933)
Q Consensus       594 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~  642 (933)
                      .++.    .+...+..+++|+++++++|.++..    ....+... +.|+.+++.+|+
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            6651    2333444556666666666666633    22233333 456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=2.9e-18  Score=155.06  Aligned_cols=171  Identities=30%  Similarity=0.538  Sum_probs=139.5

Q ss_pred             ccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcC
Q 002350          551 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL  630 (933)
Q Consensus       551 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  630 (933)
                      .++..+.+...+.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             hcccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            4455667788888999999987 56778899999999999999998 78999999999999999999998 789999999


Q ss_pred             CCCCEEEccCCcCCC-CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhc
Q 002350          631 QKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI  709 (933)
Q Consensus       631 ~~L~~L~Ls~N~l~g-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  709 (933)
                      +.|+.||+++|+++. .+|..|..+                                                       
T Consensus       102 p~levldltynnl~e~~lpgnff~m-------------------------------------------------------  126 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYM-------------------------------------------------------  126 (264)
T ss_pred             chhhhhhccccccccccCCcchhHH-------------------------------------------------------
Confidence            999999999999873 233332221                                                       


Q ss_pred             hhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcC
Q 002350          710 DERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISY  789 (933)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~  789 (933)
                                            ..|+.|+|+.|.|. .+|.+++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+
T Consensus       127 ----------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  127 ----------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             ----------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence                                  23445788888887 78888999999999999998887 6888889999999999999


Q ss_pred             CeecccCCcCCcCCC
Q 002350          790 NKLTGQIPPQLTALN  804 (933)
Q Consensus       790 N~l~~~ip~~l~~l~  804 (933)
                      |+++ .+|++++++.
T Consensus       183 nrl~-vlppel~~l~  196 (264)
T KOG0617|consen  183 NRLT-VLPPELANLD  196 (264)
T ss_pred             ceee-ecChhhhhhh
Confidence            9888 6676766553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.4e-17  Score=150.63  Aligned_cols=181  Identities=24%  Similarity=0.431  Sum_probs=155.2

Q ss_pred             hhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhcc
Q 002350          578 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW  657 (933)
Q Consensus       578 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l  657 (933)
                      .+..+...+.|.|++|+++ .+|..+..+.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.+   
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~---  101 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF---  101 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC---
Confidence            3456678889999999999 77888999999999999999999 68999999999999999999987 677766543   


Q ss_pred             ccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEE
Q 002350          658 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGL  737 (933)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  737 (933)
                                                                                                +.|+.|
T Consensus       102 --------------------------------------------------------------------------p~levl  107 (264)
T KOG0617|consen  102 --------------------------------------------------------------------------PALEVL  107 (264)
T ss_pred             --------------------------------------------------------------------------chhhhh
Confidence                                                                                      356679


Q ss_pred             EcCCCcCCC-CCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350          738 DLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL  816 (933)
Q Consensus       738 dLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  816 (933)
                      ||++|++.. ..|..|-.++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+- ..|.+++.++.|+.|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            999999874 58888999999999999999998 78889999999999999999998 7999999999999999999999


Q ss_pred             cccCCCCCcCCccC---cccccCCCCC
Q 002350          817 SGRTPDKGQFATFD---ESSYRGNPSL  840 (933)
Q Consensus       817 ~g~~p~~~~~~~~~---~~~~~gN~~l  840 (933)
                      +-..|..+++.-..   ....+.|||.
T Consensus       186 ~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  186 TVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             eecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            98888766654332   2334567765

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=7.3e-15  Score=172.69  Aligned_cols=117  Identities=37%  Similarity=0.609  Sum_probs=104.8

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCC--CcCCccCcccccCCCCCCCccccCCC
Q 002350          813 YNNLSGRTPDK--GQFATFDESSYRGNPSLCAWLIQQKY  849 (933)
Q Consensus       813 ~N~l~g~~p~~--~~~~~~~~~~~~gN~~lc~~~l~~~~  849 (933)
                      +|+++|.+|..  ..+.......+.||+++|+.+....|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999975  22234456678999999987643444

>PLN03150 hypothetical protein; Provisional

Probab=99.43  E-value=5.4e-13  Score=157.02  Aligned_cols=156  Identities=21%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCc----ccceeEecCCCCcEEEEecCCCCCCCCC
Q 002350           26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCC----HWQRVKCNATTGRVMQLSLKNTTRLNYP  101 (933)
Q Consensus        26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C----~w~gv~c~~~~~~V~~l~l~~~~~l~l~  101 (933)
                      ..+.++|.+||+++|+++..+      .  ..+| ..       ..||    .|.||.|......               
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~------~--~~~W-~g-------~~C~p~~~~w~Gv~C~~~~~~---------------  415 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLP------L--RFGW-NG-------DPCVPQQHPWSGADCQFDSTK---------------  415 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCc------c--cCCC-CC-------CCCCCcccccccceeeccCCC---------------
Confidence            456678999999999988432      1  2489 43       2343    7999999631100               


Q ss_pred             CCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcc
Q 002350          102 YDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRI  181 (933)
Q Consensus       102 ~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  181 (933)
                                   ....++.|+|++|.+.+.++    ..++++++|++|+|++|.+.+.+|..++.              
T Consensus       416 -------------~~~~v~~L~L~~n~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--------------  464 (623)
T PLN03150        416 -------------GKWFIDGLGLDNQGLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGS--------------  464 (623)
T ss_pred             -------------CceEEEEEECCCCCccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhC--------------
Confidence                         00013444555555555444    44555555555555555555555544444              


Q ss_pred             cCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCC-CCCCEEECCCCcC
Q 002350          182 EGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNL-TSLEYLDLSHNNF  254 (933)
Q Consensus       182 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l  254 (933)
                                 +++|+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..++.+ .++..+++.+|..
T Consensus       465 -----------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        465 -----------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             -----------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence                       4445555555555555555555555666666666666665555555442 3445555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=8.1e-14  Score=149.32  Aligned_cols=103  Identities=28%  Similarity=0.459  Sum_probs=49.6

Q ss_pred             CCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCC
Q 002350          538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  617 (933)
Q Consensus       538 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (933)
                      -...|++.|++.........+..|+.+.|.+|.+. .+|..+.++..|.++||+.|+++ .+|..+..|+ |+.|.+++|
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34455555555432222224444555555555543 34445555555555555555554 3444444433 455555555


Q ss_pred             cCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          618 HLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +++ .+|+.++.+..|..||.+.|.+.
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh
Confidence            554 34444444455555555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=2.6e-11  Score=136.84  Aligned_cols=122  Identities=30%  Similarity=0.396  Sum_probs=52.9

Q ss_pred             eeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCC-CCceEEeecCcCcccCchhhccCCCccEEeCcCCc
Q 002350          516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS-SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT  594 (933)
Q Consensus       516 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  594 (933)
                      .+.+..|.+... ...+..++.++.|++.+|.++...+...... +|+.|++++|.+. .+|..+..++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            344555544311 2223333555555555555544333332332 4555555555444 223334444444444444444


Q ss_pred             CcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350          595 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  641 (933)
Q Consensus       595 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  641 (933)
                      ++ .+|......++|+.|++++|++. .+|........|+.+++++|
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            44 23333333444444444444444 33333333333444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=1.3e-12  Score=140.19  Aligned_cols=189  Identities=29%  Similarity=0.452  Sum_probs=113.6

Q ss_pred             EEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCC
Q 002350          443 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN  522 (933)
Q Consensus       443 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n  522 (933)
                      ..|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|+.++++.|+++ ..|..++.++  |+.|.+++|
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNN  153 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecC
Confidence            3444444444 33444445555666666666655 55666666666666666666665 5666666654  666666666


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchh
Q 002350          523 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ  602 (933)
Q Consensus       523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  602 (933)
                      +++ .+|..++....|..||.+.|.+....+...++.+|+.|.+..|++. .+|..+. .-.|..||++.|+++ .+|-.
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchh
Confidence            666 5566666666666666666666555444446666666666666665 3455555 335667777777776 56777


Q ss_pred             hhcCCCccEEEcCCCcCCCCCchhhhcCCC---CCEEEccCC
Q 002350          603 INEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRN  641 (933)
Q Consensus       603 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N  641 (933)
                      |.+++.|++|.|.+|+++ ..|..++..-.   .++|+...+
T Consensus       230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            777777777777777776 45555543222   234444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=6.7e-11  Score=133.51  Aligned_cols=200  Identities=35%  Similarity=0.498  Sum_probs=127.9

Q ss_pred             CEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCC-CccEEeCcCCcCcccCchhhhcCCCccEEEcCCC
Q 002350          539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  617 (933)
Q Consensus       539 ~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (933)
                      ..+++..|.+...+......+.++.|++.+|.++. +|....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             ceeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            35677777665555544455677777777777763 344455553 7777777777777 55566777777777777777


Q ss_pred             cCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchh
Q 002350          618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW  697 (933)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (933)
                      +++ .+|...+..+.|+.|++++|+++ .+|.....                                            
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~--------------------------------------------  207 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL--------------------------------------------  207 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh--------------------------------------------
Confidence            777 45555556777777777777776 34432110                                            


Q ss_pred             hhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhcc
Q 002350          698 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS  777 (933)
Q Consensus       698 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  777 (933)
                                                       ...|..|++++|+.. .++..+..+..+..|.+++|++. .++..++
T Consensus       208 ---------------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~  252 (394)
T COG4886         208 ---------------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG  252 (394)
T ss_pred             ---------------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence                                             123455666666433 45556666667777777777766 3356666


Q ss_pred             CCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC
Q 002350          778 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK  823 (933)
Q Consensus       778 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  823 (933)
                      ++++++.|++++|+++ .++. +..+..++.|++++|.++...|..
T Consensus       253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            7777777777777776 3333 666677777777777776665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=6.5e-12  Score=127.75  Aligned_cols=42  Identities=33%  Similarity=0.410  Sum_probs=23.9

Q ss_pred             CCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCC
Q 002350          114 HPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN  155 (933)
Q Consensus       114 ~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n  155 (933)
                      ..+..++.++||+|.|...-.......+.+.++|+..++|+-
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~   68 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM   68 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence            345566677777776654433333345555666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=6.4e-11  Score=117.35  Aligned_cols=88  Identities=25%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             CCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeeccc-CCcCCcCCCCCCeE
Q 002350          731 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-IPPQLTALNFLSIF  809 (933)
Q Consensus       731 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L  809 (933)
                      +++|+.||||+|.++ .+-..=..+.+.+.|+|+.|.+..  -+.+++|-+|..||+++|+|... --..+++|+.|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            346677777777776 444444456777888888888762  23567778888888888888632 22467888999999


Q ss_pred             EccCCcCcccCC
Q 002350          810 NVSYNNLSGRTP  821 (933)
Q Consensus       810 ~ls~N~l~g~~p  821 (933)
                      -+.+|++.+.+.
T Consensus       405 ~L~~NPl~~~vd  416 (490)
T KOG1259|consen  405 RLTGNPLAGSVD  416 (490)
T ss_pred             hhcCCCccccch
Confidence            999999987654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.9e-11  Score=123.56  Aligned_cols=134  Identities=24%  Similarity=0.206  Sum_probs=62.3

Q ss_pred             cceEEEccCCCCCCC-CchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCC-cccCCCccEE
Q 002350          293 QLIVLGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP-KAKHDFLHHL  370 (933)
Q Consensus       293 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L  370 (933)
                      +|+.|.++.|+++.. +-..+..+|+|+.|+|..|......... ...+..|+.|+|++|.+......+ .+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            444444455544421 1122334555555555555311111000 112345555555555554443222 2355555555


Q ss_pred             EccCCcCCCC-CChh----hhhcCCCccEEEccCCCCCCC-ccccccCCCCCCEEEcCCCcCC
Q 002350          371 DISCNNFRGK-LPHN----MGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFS  427 (933)
Q Consensus       371 ~Ls~n~l~~~-~p~~----~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~  427 (933)
                      +++.+.+... +|+.    ....+++|++|++..|++..- .-..+..+++|+.|.+..|.++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            5555554421 1111    112467777777777776421 1123344566677777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1e-10  Score=122.36  Aligned_cols=186  Identities=20%  Similarity=0.185  Sum_probs=85.2

Q ss_pred             hcCCCccEEEccCCCCCCC--ccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCc-hhhcccC
Q 002350          387 VILQKLMYMDISKNCFEGN--IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF-SEYMNLT  463 (933)
Q Consensus       387 ~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~  463 (933)
                      ..|++++.|||+.|-+..-  +..-..++++|+.|+++.|++........-..++.|+.|.|+.|.++..-. .....+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            3466666666666655431  112234566666666666666532222222234455555555555542111 1122345


Q ss_pred             cCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCc-chhccCCCCCCEEE
Q 002350          464 RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV-PVQLNNLERLRILD  542 (933)
Q Consensus       464 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  542 (933)
                      +|+.|++..|...........-+..                         |+.|+|++|++.... -.....++.|..|+
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~-------------------------L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQT-------------------------LQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhH-------------------------HhhccccCCcccccccccccccccchhhhh
Confidence            5555555554311111111222333                         444444444443211 12234445555555


Q ss_pred             ccCCcCccc-cCcc------ccCCCCceEEeecCcCcccC-chhhccCCCccEEeCcCCcCcc
Q 002350          543 ISENRLSGP-IASS------LNLSSVEHLSLQKNALNGLI-PGELFRSCKLVTLNLRDNTFSG  597 (933)
Q Consensus       543 Ls~n~l~~~-~~~~------~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~  597 (933)
                      ++.+.+... .|..      -.+++|++|++..|++...- -..+..+++|+.|.+..|.++.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            555544321 1111      14566666666666663210 0233445667777777777763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=9.5e-10  Score=105.76  Aligned_cols=128  Identities=27%  Similarity=0.189  Sum_probs=38.4

Q ss_pred             CCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCC
Q 002350          143 SLKQLKILVLGHNYFDDSIFSYLN-TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLK  221 (933)
Q Consensus       143 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  221 (933)
                      +..++++|+|++|.|+..  ..++ .+.+|+.|+|++|.|+..   ..+..+++|++|++++|.++...+.....+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            334455555555555421  1233 355566666666666543   2355666666666666666653222123466677


Q ss_pred             EEEccCCcCCCCC-chhccCCCCCCEEECCCCcCCCCCC--hhhhhcCCCCceEecc
Q 002350          222 ILDISSNQLNGSL-PSVISNLTSLEYLDLSHNNFEGMFP--LSSLANHSKLEGLLLS  275 (933)
Q Consensus       222 ~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~L~  275 (933)
                      +|++++|++.... -..+..+++|++|++.+|.++..-.  ...+..+++|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            7777776665421 1345566777777777776653311  2245566666666543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=1.7e-10  Score=117.60  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             cCCCCceEEeecCcCccc----CchhhccCCCccEEeCcCCcCcccCchhh-----hcCCCccEEEcCCCcCCCC----C
Q 002350          557 NLSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGRIPHQI-----NEHSNLRFLLLGGNHLQGP----I  623 (933)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~----~  623 (933)
                      .+++|+.|+|.+|-++..    +...+..++.|+.|++++|.+...-...+     ...++|++|.+.+|.++..    +
T Consensus       211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l  290 (382)
T KOG1909|consen  211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL  290 (382)
T ss_pred             hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence            455555555555544422    12233445566666666666654333222     2356777777777776632    2


Q ss_pred             chhhhcCCCCCEEEccCCcCC
Q 002350          624 PDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       624 p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      ...+...+.|..|+|++|++.
T Consensus       291 a~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  291 AACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHhcchhhHHhcCCccccc
Confidence            233455677777888888774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=9.8e-10  Score=105.66  Aligned_cols=130  Identities=28%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             hcCCCCCCEEecCCCcccCccChhhhc-CCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhc-cCCC
Q 002350          165 LNTLPSLCTLILHWNRIEGSQTNQGIC-ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI-SNLT  242 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~  242 (933)
                      +.+..++++|+|.+|.|+...   .++ .+.+|+.|+|++|.++..  +.+..+++|++|++++|+++...+ .+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-T
T ss_pred             ccccccccccccccccccccc---chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCC
Confidence            456668899999999998653   355 578999999999999873  357889999999999999985433 34 4689


Q ss_pred             CCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCC---chhhhCCCCCC
Q 002350          243 SLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY---PDFLLHQYHLK  319 (933)
Q Consensus       243 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---p~~l~~l~~L~  319 (933)
                      +|++|++++|++...-....++.+++|++|++.                         +|.++...   ...+..+|+|+
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~-------------------------~NPv~~~~~YR~~vi~~lP~Lk  143 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLE-------------------------GNPVCEKKNYRLFVIYKLPSLK  143 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-T-------------------------T-GGGGSTTHHHHHHHH-TT-S
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeecc-------------------------CCcccchhhHHHHHHHHcChhh
Confidence            999999999998765444455555555555554                         44444221   12466788888


Q ss_pred             EEEccC
Q 002350          320 YLDLSH  325 (933)
Q Consensus       320 ~L~Ls~  325 (933)
                      .||-..
T Consensus       144 ~LD~~~  149 (175)
T PF14580_consen  144 VLDGQD  149 (175)
T ss_dssp             EETTEE
T ss_pred             eeCCEE
Confidence            887643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=7.1e-10  Score=110.06  Aligned_cols=128  Identities=29%  Similarity=0.384  Sum_probs=66.2

Q ss_pred             CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEe
Q 002350          487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL  566 (933)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L  566 (933)
                      ..|+++|+++|.|+ .+.+++.-.|. ++.|++++|.+....  .+..+++|+.|||++|.++....-..++-+.+.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccc-eeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            44566666666665 44444444444 666666666665221  255566666666666665432221124555555666


Q ss_pred             ecCcCcccCchhhccCCCccEEeCcCCcCccc-CchhhhcCCCccEEEcCCCcCC
Q 002350          567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQ  620 (933)
Q Consensus       567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~  620 (933)
                      ++|.+...  +.+.++-+|..||+++|+|... --..+++++.|+.+.|.+|++.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            65555422  3444555555556665555421 1123445555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.5e-09  Score=83.62  Aligned_cols=60  Identities=43%  Similarity=0.592  Sum_probs=33.9

Q ss_pred             ccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350          757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL  816 (933)
Q Consensus       757 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  816 (933)
                      +|++|++++|+++...++.|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555544445555555555555555555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=5.5e-09  Score=82.46  Aligned_cols=61  Identities=41%  Similarity=0.576  Sum_probs=56.6

Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCee
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL  792 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  792 (933)
                      ++|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688999999999976668899999999999999999999999999999999999999986

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.70  E-value=1.6e-08  Score=72.82  Aligned_cols=42  Identities=36%  Similarity=0.740  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcccceeEec
Q 002350           30 ETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCN   81 (933)
Q Consensus        30 ~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~w~gv~c~   81 (933)
                      ++|++||++||+++..+     +.+.+.+| +...    ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~-----~~~~l~~W-~~~~----~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNND-----PSGVLSSW-NPSS----DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-S-----C-CCCTT---TT------S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccc-----cCcccccC-CCcC----CCCCeeeccEEeC
Confidence            68999999999999642     35789999 5431    1589999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=1.3e-08  Score=122.53  Aligned_cols=106  Identities=27%  Similarity=0.313  Sum_probs=60.1

Q ss_pred             CCCEEeCCCCc--CCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEE
Q 002350          146 QLKILVLGHNY--FDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKIL  223 (933)
Q Consensus       146 ~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  223 (933)
                      +|++|-+..|.  +.......|..++.|++|||++|.--+..| ..++.+-+||+|+|++..+.. +|..++++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence            45565555554  333344445556666666666655444444 456666666666666666553 56666666666666


Q ss_pred             EccCCcCCCCCchhccCCCCCCEEECCCCc
Q 002350          224 DISSNQLNGSLPSVISNLTSLEYLDLSHNN  253 (933)
Q Consensus       224 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  253 (933)
                      ++..+.-...+|.....+++|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            666655443445555556666666655443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=2.1e-09  Score=121.36  Aligned_cols=129  Identities=34%  Similarity=0.426  Sum_probs=80.5

Q ss_pred             CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350          115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK  194 (933)
Q Consensus       115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~  194 (933)
                      .+..++.+++..|.+....     ..+..+++|+.|++.+|.|... ...+..+++|++|++++|.|+...+   +..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhcc
Confidence            4556666666666654311     3466777777777777777632 2225667777777777777766533   56666


Q ss_pred             CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCc-hhccCCCCCCEEECCCCcCC
Q 002350          195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP-SVISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  255 (933)
                      .|+.|++++|.+..  ...+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       141 ~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  141 LLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            67777777777665  2334456677777777777664433 1 455666666777766654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=3e-09  Score=120.10  Aligned_cols=85  Identities=22%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             ccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeeccc---CCcC-CcCCCCCCeE
Q 002350          734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ---IPPQ-LTALNFLSIF  809 (933)
Q Consensus       734 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L  809 (933)
                      |+.+++++|++. .++..+..+..+..|++++|++...-  .+.....+..+.++.|.+...   .+.. ....+.+..+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566788888876 44466777788888888888887432  245566677777777776521   2221 4556778888


Q ss_pred             EccCCcCcccCC
Q 002350          810 NVSYNNLSGRTP  821 (933)
Q Consensus       810 ~ls~N~l~g~~p  821 (933)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888888776555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=7.1e-08  Score=116.24  Aligned_cols=276  Identities=21%  Similarity=0.147  Sum_probs=152.8

Q ss_pred             CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcC-CCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEE
Q 002350          341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF-RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL  419 (933)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  419 (933)
                      ...+...+-+|.+..+.  .-..++.|++|-+.+|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            45566666666555442  122444677777777751 236777777778888888888877666788888888888888


Q ss_pred             EcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcc--ccccccccccCCCCCCEEEccCC
Q 002350          420 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN--FSGKIKDGLLSSTSLQVLDISNN  497 (933)
Q Consensus       420 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n  497 (933)
                      ++++..+. .+|..+ ..+..|.+|++..+.....++.....+++|++|.+..-.  .+...-..+..+..|+.+.....
T Consensus       601 ~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             cccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            88888877 677765 577788888888776655556666668888888776643  22222233445555555555433


Q ss_pred             cCCC-CChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc------c-CCCCceEEeecC
Q 002350          498 MLSG-HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL------N-LSSVEHLSLQKN  569 (933)
Q Consensus       498 ~l~~-~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~-l~~L~~L~L~~n  569 (933)
                      .... .-......+....+.+.+.++... ..+..+..+.+|+.|.+.++.+........      . ++++..+.+.++
T Consensus       679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~  757 (889)
T KOG4658|consen  679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC  757 (889)
T ss_pred             hhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence            2200 001111122222333443333322 344556677777777777777654322221      0 222333333333


Q ss_pred             cCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCC
Q 002350          570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP  622 (933)
Q Consensus       570 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  622 (933)
                      ..-. .+....-.++|+.|.+..+.....+......+..++.+.+..+.+.+.
T Consensus       758 ~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  758 HMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             cccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            2111 112222335666666666655544444444444555555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4.6e-09  Score=104.54  Aligned_cols=180  Identities=24%  Similarity=0.250  Sum_probs=91.7

Q ss_pred             CCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCc-ccCccChhhhcCCCCC
Q 002350          118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNR-IEGSQTNQGICELKNL  196 (933)
Q Consensus       118 ~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L  196 (933)
                      .|++||||+..++.....   .-+..+.+|+.|.|.++++++.+...+++-..|+.|||+.+. ++.....-.+.+++.|
T Consensus       186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            466777776655432211   234556666667777777766666666666677777766653 2221111234566666


Q ss_pred             CEEECCCCCCCCcchhhc-CC-CCCCCEEEccCCcCC---CCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCce
Q 002350          197 FEMNLERNFIGSPLITCL-KN-LTRLKILDISSNQLN---GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEG  271 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l-~~-l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  271 (933)
                      ++|+|+.|.+..+....+ .. -++|+.|+|+++.-.   ..+..-..++++|.+|||++|.                  
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v------------------  324 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV------------------  324 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc------------------
Confidence            666666666544322111 11 135556666554211   0111112345555555555554                  


Q ss_pred             EecccccCccccccCCCCCCCcceEEEccCCCCCCCCchh---hhCCCCCCEEEccCCC
Q 002350          272 LLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF---LLHQYHLKYLDLSHNK  327 (933)
Q Consensus       272 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~  327 (933)
                             .....-...+..++.|++|.++.|-.  .+|..   +...+.|.+||+.++-
T Consensus       325 -------~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  325 -------MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             -------ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence                   22222222344445555555555533  34443   3456777777777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=3.7e-08  Score=98.14  Aligned_cols=65  Identities=12%  Similarity=0.104  Sum_probs=35.7

Q ss_pred             CCCCCCEEEcCCCCCcCcCcC-CcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCC
Q 002350          339 NNPKLEVLLLKNNSFSGILQL-PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE  403 (933)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~  403 (933)
                      -+|++..+.+..|.+...... .+..++.+..|+|+.+++...-.-+....++.|..|.++++.+.
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            456677777777766544322 23455566666676666653222222234666666666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.3e-09  Score=103.10  Aligned_cols=160  Identities=19%  Similarity=0.137  Sum_probs=93.4

Q ss_pred             CCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCC-CcccchhHHHhCCCCCCEEEcCCCCCcCcCcCC--cccC
Q 002350          288 WLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP--KAKH  364 (933)
Q Consensus       288 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~  364 (933)
                      +..+.+|+.|.+.++++.+.+...++...+|+.|+|+.+. ++......++.+++.|..|+++.|.+.......  ..--
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            3345556666677777776677777777778888887763 443334445667777888888777655432111  1234


Q ss_pred             CCccEEEccCCc--CCCCCChhhhhcCCCccEEEccCCC-CCCCccccccCCCCCCEEEcCCCcCCCCcchhh--hcCCC
Q 002350          365 DFLHHLDISCNN--FRGKLPHNMGVILQKLMYMDISKNC-FEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV--VTGCF  439 (933)
Q Consensus       365 ~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~l~  439 (933)
                      ++|+.|+++++.  +...--..+...+|+|.+|||++|. ++...-..+.+++.|++|.+++|..  .+|..+  +...+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~p  363 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKP  363 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCc
Confidence            567777777654  1111112233457788888887764 3333334556677777777777763  233322  23445


Q ss_pred             CCCEEECcCC
Q 002350          440 SLELLDLSNN  449 (933)
Q Consensus       440 ~L~~L~Ls~n  449 (933)
                      +|.+|++.++
T Consensus       364 sl~yLdv~g~  373 (419)
T KOG2120|consen  364 SLVYLDVFGC  373 (419)
T ss_pred             ceEEEEeccc
Confidence            6666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=9.7e-09  Score=113.73  Aligned_cols=161  Identities=23%  Similarity=0.217  Sum_probs=96.4

Q ss_pred             ccCCCCCCCEeeCCCCCCccccCccc------------------------cccCCC---CCCCCEEeCCCCcCCCcchhh
Q 002350          112 LFHPLEELQSLDLSVNIFTYDSKVAA------------------------YDSLRS---LKQLKILVLGHNYFDDSIFSY  164 (933)
Q Consensus       112 ~f~~l~~L~~LdLs~n~~~~~~~~~~------------------------~~~l~~---l~~L~~L~Ls~n~l~~~~~~~  164 (933)
                      .+..|..||+|.|.++.+.......+                        ...+.+   -..|.+.+.++|.+. ....+
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S  182 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES  182 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence            56688899999999887653110000                        001111   123455555666554 34455


Q ss_pred             hcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCC
Q 002350          165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSL  244 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  244 (933)
                      +.-++.|++|||++|+++..   +.+..+++|++|||++|.+....--....|. |+.|.+++|.++..  ..+.+|.+|
T Consensus       183 Lqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL  256 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSL  256 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhh
Confidence            56667777777777777654   3566777777777777776653323333444 77777777776632  456677777


Q ss_pred             CEEECCCCcCCCCCChhhhhcCCCCceEecccccC
Q 002350          245 EYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN  279 (933)
Q Consensus       245 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~  279 (933)
                      +.||+++|-+.+.-....+..+..|+.|.|.+|..
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            77777777766554444556666666666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=2.9e-08  Score=87.55  Aligned_cols=88  Identities=24%  Similarity=0.384  Sum_probs=56.8

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      .++.|+|++|.++ .+|+++..++.|+.||++.|.+. ..|..+..|.+|-.||.-+|.+. +||.++---+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            3455777777776 67777777777777777777777 56666666777777777777766 555543222233334556


Q ss_pred             CCcCcccCCCC
Q 002350          813 YNNLSGRTPDK  823 (933)
Q Consensus       813 ~N~l~g~~p~~  823 (933)
                      ++++.+..|.+
T Consensus       155 nepl~~~~~~k  165 (177)
T KOG4579|consen  155 NEPLGDETKKK  165 (177)
T ss_pred             CCcccccCccc
Confidence            66666655544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.34  E-value=7.4e-08  Score=94.83  Aligned_cols=66  Identities=20%  Similarity=0.128  Sum_probs=33.3

Q ss_pred             CCCCCCEEEcCCCCCcCcCcCC----cccCCCccEEEccCCcCCCCCChhhhh-----cCCCccEEEccCCCCCC
Q 002350          339 NNPKLEVLLLKNNSFSGILQLP----KAKHDFLHHLDISCNNFRGKLPHNMGV-----ILQKLMYMDISKNCFEG  404 (933)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~p~~~~~-----~l~~L~~L~Ls~n~l~~  404 (933)
                      .+.+|+.|++.+|-++...+..    ....+.|++|.+.+|-++......++.     ..|+|..|-..+|...+
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            3455555555555554332221    223444666666666665554444432     23555666666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=1.4e-07  Score=104.71  Aligned_cols=126  Identities=29%  Similarity=0.278  Sum_probs=97.9

Q ss_pred             CCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEe
Q 002350          488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSL  566 (933)
Q Consensus       488 ~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L  566 (933)
                      .|.+.+.++|.+. .+..++.-++. |+.|+|++|+++...  .+..|+.|+.|||+.|++.....-.. ++. |..|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            5778888888887 66667766666 999999999998433  78889999999999999875433333 555 999999


Q ss_pred             ecCcCcccCchhhccCCCccEEeCcCCcCcccC-chhhhcCCCccEEEcCCCcCC
Q 002350          567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI-PHQINEHSNLRFLLLGGNHLQ  620 (933)
Q Consensus       567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~  620 (933)
                      ++|.++..  ..+.++.+|+.||++.|-+.+.- -..+..+..|+.|+|.||++-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99998755  56778899999999999887531 233456778899999999875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.07  E-value=2.9e-07  Score=96.42  Aligned_cols=84  Identities=20%  Similarity=0.123  Sum_probs=40.7

Q ss_pred             CCCCEEeCCCCcCCC--cchhhhcCCCCCCEEecCCCcccCccChhh-hcCCCCCCEEECCCCC-CCCcchhhc-CCCCC
Q 002350          145 KQLKILVLGHNYFDD--SIFSYLNTLPSLCTLILHWNRIEGSQTNQG-ICELKNLFEMNLERNF-IGSPLITCL-KNLTR  219 (933)
Q Consensus       145 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~  219 (933)
                      ..|+.|.+.++.=.+  ..-..-.+++++++|++.++.......... -..++.|++|+|..|. ++......+ ..|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            356777777765322  122223456666666666665222211111 1345666666666543 333222222 24566


Q ss_pred             CCEEEccCC
Q 002350          220 LKILDISSN  228 (933)
Q Consensus       220 L~~L~Ls~n  228 (933)
                      |++|+++++
T Consensus       218 L~~lNlSwc  226 (483)
T KOG4341|consen  218 LKYLNLSWC  226 (483)
T ss_pred             HHHhhhccC
Confidence            666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=3.1e-06  Score=83.62  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCC
Q 002350          165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLER  203 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~  203 (933)
                      +..+..++.+|||+|.|.....   ...+.+-++|+..+++.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            3446666666666666654322   01233344555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=6.9e-07  Score=79.09  Aligned_cols=134  Identities=22%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             cceeecCCCcCCCCcch---hccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEe
Q 002350          514 LEILSMSKNHLEGNVPV---QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN  589 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  589 (933)
                      +..++|++|++- .++.   .+.....|+..+|++|.+....+.+- ..+.++.+++++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            444555555443 2222   23334456666777777765444443 5667788888888887 4577788888999999


Q ss_pred             CcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350          590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF  651 (933)
Q Consensus       590 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~  651 (933)
                      ++.|.+. ..|+.+..+.+|-.|+..+|.+. .+|..+-.-+..-..++.++++.+.-|.-+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            9999888 67788877888888888888887 455554444444455667777776665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=4.8e-06  Score=83.48  Aligned_cols=108  Identities=23%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             CCCEEEcCCCcCCCCcch-hhhcCCCCCCEEECcCCcCCC--cCchhhcccCcCCeEEccCccccccccccccCCCCCCE
Q 002350          415 ELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEG--QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV  491 (933)
Q Consensus       415 ~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  491 (933)
                      .++.+.+.++.|...-.. .+...++.++.+||.+|.++.  ++..-+.++|.|++|+++.|.+...+..--....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            444555555555422222 223456677788888887764  23334557788888888888776433221134567788


Q ss_pred             EEccCCcCCCC-ChhhHhhhccccceeecCCCc
Q 002350          492 LDISNNMLSGH-IPHWMGNFSSELEILSMSKNH  523 (933)
Q Consensus       492 L~Ls~n~l~~~-~p~~l~~~~~~L~~L~L~~n~  523 (933)
                      |.|.+..+.-. .-..+..+|. ++.|.++.|+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~-vtelHmS~N~  157 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPK-VTELHMSDNS  157 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchh-hhhhhhccch
Confidence            88877665421 2223344444 6777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=5.7e-06  Score=97.48  Aligned_cols=135  Identities=24%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             CCCCCCEEECCCCCCCCc-chhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCc
Q 002350          192 ELKNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE  270 (933)
Q Consensus       192 ~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  270 (933)
                      .+|+|+.|.+++-.+... .-....++++|..||+|+.+++..  ..+++|++|+.|.+.+-.+........+-++++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            345555555555443321 222334556666666666655533  45556666666655554444322233444555555


Q ss_pred             eEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEE
Q 002350          271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLL  347 (933)
Q Consensus       271 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  347 (933)
                      .||+|........                   .+....-+.-..+|+|+.||.|++.+.+.+-+.+....++|+.+.
T Consensus       224 vLDIS~~~~~~~~-------------------~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  224 VLDISRDKNNDDT-------------------KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             eeeccccccccch-------------------HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            5555432211100                   000000111224678888888888887777666665666666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.82  E-value=1.1e-05  Score=95.18  Aligned_cols=149  Identities=26%  Similarity=0.309  Sum_probs=87.0

Q ss_pred             CCCCEeeCCCCCCccccCccccccCC-CCCCCCEEeCCCCcCCC-cchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLR-SLKQLKILVLGHNYFDD-SIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK  194 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~  194 (933)
                      .+|++||+++...-   .......++ .+|.|++|.+++-.+.. .......++++|+.||+|++.++..   .++++|+
T Consensus       122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK  195 (699)
T ss_pred             HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence            46777777765332   111123343 46777777777766543 3344456677777777777777654   4677777


Q ss_pred             CCCEEECCCCCCCC-cchhhcCCCCCCCEEEccCCcCCCCC--c----hhccCCCCCCEEECCCCcCCCCCChhhhhcCC
Q 002350          195 NLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSL--P----SVISNLTSLEYLDLSHNNFEGMFPLSSLANHS  267 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  267 (933)
                      +|++|.+.+=.+.. ..-..+-+|++|++||+|........  .    +.-..|++|+.||.|+..+...+-...+...+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~  275 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP  275 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence            77777777665543 23345566777777777765444221  1    11134677777777776665544434444444


Q ss_pred             CCce
Q 002350          268 KLEG  271 (933)
Q Consensus       268 ~L~~  271 (933)
                      +|+.
T Consensus       276 ~L~~  279 (699)
T KOG3665|consen  276 NLQQ  279 (699)
T ss_pred             cHhh
Confidence            4443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=7.6e-05  Score=80.94  Aligned_cols=74  Identities=14%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCC-cCCCCCchhhhcCCCCCE
Q 002350          557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN-HLQGPIPDQLCQLQKLAM  635 (933)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~  635 (933)
                      .+..++.|++++|.++.. |. +  -++|+.|+++++.--..+|+.+.  ++|+.|++++| .+. .+|.      +|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence            467788888888877643 41 1  23688888887544446666553  47888888887 443 4553      4566


Q ss_pred             EEccCCcC
Q 002350          636 MDLSRNKF  643 (933)
Q Consensus       636 L~Ls~N~l  643 (933)
                      |+++++..
T Consensus       117 L~L~~n~~  124 (426)
T PRK15386        117 LEIKGSAT  124 (426)
T ss_pred             EEeCCCCC
Confidence            66665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=1.7e-05  Score=57.11  Aligned_cols=36  Identities=36%  Similarity=0.641  Sum_probs=19.0

Q ss_pred             ccCeeeccccccccccchhccCCCCCCEEECcCCeec
Q 002350          757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT  793 (933)
Q Consensus       757 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  793 (933)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=2.8e-05  Score=55.97  Aligned_cols=37  Identities=43%  Similarity=0.698  Sum_probs=32.6

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeecccccccc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSG  770 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~  770 (933)
                      +|+.|++++|+++ .+|..+++|++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6889999999999 688889999999999999999994

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.66  E-value=3.4e-06  Score=88.66  Aligned_cols=130  Identities=24%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             CCCCCCEEEccCCc-CCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCEEEccCCcCcccc-----Cccc
Q 002350          485 SSTSLQVLDISNNM-LSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSGPI-----ASSL  556 (933)
Q Consensus       485 ~l~~L~~L~Ls~n~-l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~  556 (933)
                      +..+|+.|.++.|+ +++.-...++.....|+.+++..+....  .+...-.+++.|+.+.+++|......     ...-
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            34556666666554 2222222233322336666666554321  12222345667777777766543221     1111


Q ss_pred             -cCCCCceEEeecCcCc-ccCchhhccCCCccEEeCcCCcCccc--CchhhhcCCCccEEEc
Q 002350          557 -NLSSVEHLSLQKNALN-GLIPGELFRSCKLVTLNLRDNTFSGR--IPHQINEHSNLRFLLL  614 (933)
Q Consensus       557 -~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L  614 (933)
                       ....|+.+.|++++.. ...-..+..+++|+.+++-+++-...  +...-..++++++..+
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence             4566777777777643 22223455677787777777654321  1122245666665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.52  E-value=0.00018  Score=78.18  Aligned_cols=138  Identities=18%  Similarity=0.229  Sum_probs=84.1

Q ss_pred             hcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCC-cCCCCcchhccCCCC
Q 002350          459 YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN-HLEGNVPVQLNNLER  537 (933)
Q Consensus       459 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~  537 (933)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.+++|.--..+|..+   +.+|+.|++++| .+. .+|.      +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence            455788999999999887 4552   23469999998865444666544   345999999988 444 4553      4


Q ss_pred             CCEEEccCCcCccccCccccCCCCceEEeecCcCc--ccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC
Q 002350          538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALN--GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG  615 (933)
Q Consensus       538 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  615 (933)
                      |+.|++.++.... ++.  -.++|+.|.+.+++..  ..+|..+  -++|++|++++|... ..|..+.  .+|+.|+++
T Consensus       114 Le~L~L~~n~~~~-L~~--LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        114 VRSLEIKGSATDS-IKN--VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             cceEEeCCCCCcc-ccc--CcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            7777777655432 111  1245677776543211  0111111  147888888887765 3454444  477888877


Q ss_pred             CCc
Q 002350          616 GNH  618 (933)
Q Consensus       616 ~N~  618 (933)
                      .+.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            663

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.48  E-value=0.0002  Score=68.44  Aligned_cols=85  Identities=28%  Similarity=0.285  Sum_probs=59.0

Q ss_pred             CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chhhhcCCCCCEE
Q 002350          558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMM  636 (933)
Q Consensus       558 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L  636 (933)
                      ..+...+||++|.+...  ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|.+.... -+-+..++.|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34556677777776533  45667778888888888888666655566677888888888876331 1235667788888


Q ss_pred             EccCCcCC
Q 002350          637 DLSRNKFS  644 (933)
Q Consensus       637 ~Ls~N~l~  644 (933)
                      .+-+|+.+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            87777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.33  E-value=0.00028  Score=67.40  Aligned_cols=106  Identities=27%  Similarity=0.265  Sum_probs=59.2

Q ss_pred             CCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcc-hhhcCCCCCCCEEE
Q 002350          146 QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL-ITCLKNLTRLKILD  224 (933)
Q Consensus       146 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~  224 (933)
                      +...+||++|.+..  ...|..++.|.+|.|.+|+|+.+.| ..-.-+++|+.|.|.+|+|.... ..-+..|++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            34445555555432  1234455555666666666655444 22234455666666666654311 22356677788888


Q ss_pred             ccCCcCCCCCc---hhccCCCCCCEEECCCCcC
Q 002350          225 ISSNQLNGSLP---SVISNLTSLEYLDLSHNNF  254 (933)
Q Consensus       225 Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l  254 (933)
                      +-+|.++..--   -.+..+++|+.||+..-..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            77777664321   3466788888888776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.0005  Score=63.70  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=36.1

Q ss_pred             HhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCC
Q 002350          337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKEL  416 (933)
Q Consensus       337 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  416 (933)
                      +.++++|+.+.+.. .+..+....|..+++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......+..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence            33444444444442 333343344444444555554443 32 33444444444455555543 2221222334444555


Q ss_pred             CEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350          417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  447 (933)
Q Consensus       417 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  447 (933)
                      +.+++..+ +. .++...+..+ .|+.+.+.
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence            55555433 22 3344444444 45555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00027  Score=70.65  Aligned_cols=66  Identities=27%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             cCCCCCCCCEEeCCCC--cCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCC
Q 002350          140 SLRSLKQLKILVLGHN--YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF  205 (933)
Q Consensus       140 ~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~  205 (933)
                      .+-.+++|++|.+|.|  .+.+.++.....+++|++|++++|+|........+..+++|..|++..|.
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            3556667777777777  44444444444556666666666666532222223344444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0027  Score=58.70  Aligned_cols=63  Identities=13%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             cccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecC
Q 002350          109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH  177 (933)
Q Consensus       109 ~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  177 (933)
                      +..+|...++|+.+.+.. .+...    ...+|..+++|+.+++..+ +.......|.++++|+.+.+.
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I----~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKI----GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-----TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEe----Chhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            334556666666666553 22211    1144555555555555543 433333444445445555553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.00018  Score=71.83  Aligned_cols=100  Identities=31%  Similarity=0.323  Sum_probs=64.5

Q ss_pred             CCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCc-chhhcCCCCCCCE
Q 002350          144 LKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP-LITCLKNLTRLKI  222 (933)
Q Consensus       144 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~  222 (933)
                      +.+.+.|++.++.+++.  +...+++.|++|.||-|+|+...|   +..+++|++|.|..|.|.+. -...+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34445555656555432  234567777777777777766544   67777788888887777652 2345677888888


Q ss_pred             EEccCCcCCCCCch-----hccCCCCCCEEE
Q 002350          223 LDISSNQLNGSLPS-----VISNLTSLEYLD  248 (933)
Q Consensus       223 L~Ls~n~l~~~~p~-----~l~~l~~L~~L~  248 (933)
                      |.|..|...+..+.     .+..|++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888877765543     345567777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.44  E-value=0.0011  Score=77.09  Aligned_cols=111  Identities=19%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             CCCCCEEeCCCCcCCCc--chhhhcCCCCCCEEecCCC-cccCccC---hhhhcCCCCCCEEECCCCC-CCCcchhhcCC
Q 002350          144 LKQLKILVLGHNYFDDS--IFSYLNTLPSLCTLILHWN-RIEGSQT---NQGICELKNLFEMNLERNF-IGSPLITCLKN  216 (933)
Q Consensus       144 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~i~~~~~---~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~  216 (933)
                      ++.|+.|.+..+.-...  .-.....++.|+.|+++++ ......+   ......+++|+.|+++++. +++.....++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666665532211  2344455666666666652 1111111   1123344666666666666 55444444443


Q ss_pred             -CCCCCEEEccCCc-CCCCCchh-ccCCCCCCEEECCCCcC
Q 002350          217 -LTRLKILDISSNQ-LNGSLPSV-ISNLTSLEYLDLSHNNF  254 (933)
Q Consensus       217 -l~~L~~L~Ls~n~-l~~~~p~~-l~~l~~L~~L~L~~n~l  254 (933)
                       |++|++|.+.++. ++...-.. ...+++|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             5666666655554 34322222 23455566666665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.42  E-value=0.0021  Score=64.35  Aligned_cols=66  Identities=23%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             hcCCCCCCEEECCCC--CCCCcchhhcCCCCCCCEEEccCCcCCCC-CchhccCCCCCCEEECCCCcCC
Q 002350          190 ICELKNLFEMNLERN--FIGSPLITCLKNLTRLKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       190 l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  255 (933)
                      +-.|++|++|.++.|  .+.+.++....++++|++|++++|++... --..+..+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            444555555555555  33443333334456666666666655520 0012334455556666655543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.00018  Score=71.78  Aligned_cols=102  Identities=24%  Similarity=0.149  Sum_probs=73.8

Q ss_pred             CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350          115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK  194 (933)
Q Consensus       115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~  194 (933)
                      .+.+.+.|+..++.+++.      ....+++.|++|.||-|.|+..-|  +..|++|+.|.|..|.|.......-+.+++
T Consensus        17 dl~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            456677778887777653      235678888888888888875433  778888888888888887665555677889


Q ss_pred             CCCEEECCCCCCCCcch-----hhcCCCCCCCEEE
Q 002350          195 NLFEMNLERNFIGSPLI-----TCLKNLTRLKILD  224 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~  224 (933)
                      +|+.|.|..|.-.+..+     ..+.-|++|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999998887555332     2345677777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.16  E-value=0.0017  Score=75.66  Aligned_cols=239  Identities=20%  Similarity=0.098  Sum_probs=129.7

Q ss_pred             CCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCC-cCCCc----chhhhcCCCCCCEEecCCCc-ccCccCh
Q 002350          114 HPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN-YFDDS----IFSYLNTLPSLCTLILHWNR-IEGSQTN  187 (933)
Q Consensus       114 ~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-i~~~~~~  187 (933)
                      ...+.|+.|.+..+.-.....  .......+++|+.|+++++ .....    .......+++|+.|+++++. ++...- 
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-  261 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-  261 (482)
T ss_pred             hhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-
Confidence            357889999888774322110  1145677899999999873 21111    12344567999999999988 543333 


Q ss_pred             hhhc-CCCCCCEEECCCCC-CCCcchhhc-CCCCCCCEEEccCCcCCCC--CchhccCCCCCCEEECCCCcCCCCCChhh
Q 002350          188 QGIC-ELKNLFEMNLERNF-IGSPLITCL-KNLTRLKILDISSNQLNGS--LPSVISNLTSLEYLDLSHNNFEGMFPLSS  262 (933)
Q Consensus       188 ~~l~-~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  262 (933)
                      ..+. .+++|++|.+.+|. +++.....+ ..+++|++|+++++.....  +.....++++|+.|.+....-        
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------  333 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------  333 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------
Confidence            3333 38899999988888 666544443 4688899999998865421  223344567666655433221        


Q ss_pred             hhcCCCCceEecccccCcc--ccccCCCCCCCcceEEEccCCCCCCCC-chhhhCCCCCCEEEccCCCCcccchhHHHhC
Q 002350          263 LANHSKLEGLLLSTRNNTL--HVKTENWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN  339 (933)
Q Consensus       263 l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  339 (933)
                         +..++.+.+.......  .........+++++.+.+..+...... ...+..++.|+ ..+...          ...
T Consensus       334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~  399 (482)
T KOG1947|consen  334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCR  399 (482)
T ss_pred             ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hcc
Confidence               2222222222211111  122223455667777777776633222 23344454442 111111          112


Q ss_pred             CCCCCEEEcCCCCCcCcCcCC-ccc-CCCccEEEccCCcC
Q 002350          340 NPKLEVLLLKNNSFSGILQLP-KAK-HDFLHHLDISCNNF  377 (933)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~-~~~-~~~L~~L~Ls~n~l  377 (933)
                      ...++.|+++.+......... ... +..++.+++.++..
T Consensus       400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             CCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            223777777776644332111 111 55666677766653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.0047  Score=36.90  Aligned_cols=18  Identities=50%  Similarity=0.735  Sum_probs=7.8

Q ss_pred             CCEEECcCCeecccCCcCC
Q 002350          782 IESLDISYNKLTGQIPPQL  800 (933)
Q Consensus       782 L~~LdLs~N~l~~~ip~~l  800 (933)
                      |++|||++|+++ .+|++|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.39  E-value=0.0081  Score=35.88  Aligned_cols=20  Identities=60%  Similarity=0.833  Sum_probs=11.9

Q ss_pred             cCeeeccccccccccchhccC
Q 002350          758 ILALNLSNNSLSGSIPESFSN  778 (933)
Q Consensus       758 L~~L~Ls~N~l~~~~p~~~~~  778 (933)
                      |++|||++|+++ .+|.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            566666666666 55555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.85  E-value=0.0012  Score=74.67  Aligned_cols=36  Identities=36%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             CCEEeCCCCcCCCcc----hhhhcCCCCCCEEecCCCccc
Q 002350          147 LKILVLGHNYFDDSI----FSYLNTLPSLCTLILHWNRIE  182 (933)
Q Consensus       147 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~i~  182 (933)
                      +..|.|.+|.+....    ...+.....|..|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            556666666655433    333455666666666666665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.48  E-value=0.0011  Score=75.01  Aligned_cols=193  Identities=24%  Similarity=0.192  Sum_probs=117.2

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhh----cCC-CCCCEEecCCCcccCccC---hh
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYL----NTL-PSLCTLILHWNRIEGSQT---NQ  188 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~Ls~n~i~~~~~---~~  188 (933)
                      ..++.|+|.+|.+..........++.....|..|++++|.+.+.....+    ... ..|++|++..|.+++...   ..
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            3488889999988776665556778889999999999999875433333    222 556778888887775433   23


Q ss_pred             hhcCCCCCCEEECCCCCCCC----cchhhcC----CCCCCCEEEccCCcCCCCC----chhccCCCC-CCEEECCCCcCC
Q 002350          189 GICELKNLFEMNLERNFIGS----PLITCLK----NLTRLKILDISSNQLNGSL----PSVISNLTS-LEYLDLSHNNFE  255 (933)
Q Consensus       189 ~l~~l~~L~~L~Ls~n~l~~----~~~~~l~----~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~-L~~L~L~~n~l~  255 (933)
                      .+.+..+++.++++.|.+..    .++..+.    ...++++|.+++|.++...    ...+...++ ++.|++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            45567778888888887642    1223333    3567777777777666321    123334444 555666666654


Q ss_pred             CCCChhhhhcCCCCceEecccccCccccccCCCCCC-CcceEEEccCCCCCCCC----chhhhCCCCCCEEEccCCCCcc
Q 002350          256 GMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT-SQLIVLGLTKCNLNGSY----PDFLLHQYHLKYLDLSHNKLVG  330 (933)
Q Consensus       256 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~  330 (933)
                      +..-.. +                     ...+... ..+++++++.|.++...    .+.+..+++++.+.++.|.+..
T Consensus       247 d~g~~~-L---------------------~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEK-L---------------------LPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHH-H---------------------HHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            321000 0                     0011112 45667777777776543    3345566777777777777664


Q ss_pred             c
Q 002350          331 N  331 (933)
Q Consensus       331 ~  331 (933)
                      .
T Consensus       305 ~  305 (478)
T KOG4308|consen  305 Y  305 (478)
T ss_pred             H
Confidence            3

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.99  E-value=0.0064  Score=59.45  Aligned_cols=83  Identities=22%  Similarity=0.245  Sum_probs=73.3

Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  811 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  811 (933)
                      ...+.||++.|++. ..-..+.-++.|..|++|.|.+. ..|..++++..+..+++..|.++ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            45678999999987 45566788899999999999998 78999999999999999999988 78999999999999999


Q ss_pred             cCCcCc
Q 002350          812 SYNNLS  817 (933)
Q Consensus       812 s~N~l~  817 (933)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.05  E-value=0.16  Score=28.06  Aligned_cols=11  Identities=45%  Similarity=0.833  Sum_probs=3.7

Q ss_pred             CCEEECcCCee
Q 002350          782 IESLDISYNKL  792 (933)
Q Consensus       782 L~~LdLs~N~l  792 (933)
                      |+.|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.33  E-value=0.076  Score=51.35  Aligned_cols=32  Identities=16%  Similarity=0.001  Sum_probs=15.1

Q ss_pred             CEEeCCCCcCCCcchhhhcCCCCCCEEecCCC
Q 002350          148 KILVLGHNYFDDSIFSYLNTLPSLCTLILHWN  179 (933)
Q Consensus       148 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  179 (933)
                      +.+|-++..|.......+.+++.++.|.+.+|
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            34444444444444444444444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.83  E-value=0.51  Score=29.38  Aligned_cols=13  Identities=38%  Similarity=0.624  Sum_probs=5.5

Q ss_pred             CCCEEECcCCeec
Q 002350          781 MIESLDISYNKLT  793 (933)
Q Consensus       781 ~L~~LdLs~N~l~  793 (933)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.83  E-value=0.51  Score=29.38  Aligned_cols=13  Identities=38%  Similarity=0.624  Sum_probs=5.5

Q ss_pred             CCCEEECcCCeec
Q 002350          781 MIESLDISYNKLT  793 (933)
Q Consensus       781 ~L~~LdLs~N~l~  793 (933)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.23  E-value=0.023  Score=55.76  Aligned_cols=87  Identities=16%  Similarity=0.124  Sum_probs=58.2

Q ss_pred             hcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCC
Q 002350          165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSL  244 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  244 (933)
                      +.....-+.||++.|++....  ..++.++.|..|+++.|++.- .|..++.+..++++++..|..+ ..|.+++..+.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~--~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLG--KNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHHhhc--cchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            444455555555555544322  235556667777777776654 5677777777888888777776 677788888888


Q ss_pred             CEEECCCCcCC
Q 002350          245 EYLDLSHNNFE  255 (933)
Q Consensus       245 ~~L~L~~n~l~  255 (933)
                      +++++..+.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888877754

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.67  E-value=0.65  Score=28.88  Aligned_cols=15  Identities=47%  Similarity=0.598  Sum_probs=9.0

Q ss_pred             cccCeeecccccccc
Q 002350          756 QAILALNLSNNSLSG  770 (933)
Q Consensus       756 ~~L~~L~Ls~N~l~~  770 (933)
                      ++|+.|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666663

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.67  E-value=0.65  Score=28.88  Aligned_cols=15  Identities=47%  Similarity=0.598  Sum_probs=9.0

Q ss_pred             cccCeeecccccccc
Q 002350          756 QAILALNLSNNSLSG  770 (933)
Q Consensus       756 ~~L~~L~Ls~N~l~~  770 (933)
                      ++|+.|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666663

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.25  E-value=0.25  Score=30.09  Aligned_cols=13  Identities=38%  Similarity=0.447  Sum_probs=4.5

Q ss_pred             CCCEEECCCCCCC
Q 002350          195 NLFEMNLERNFIG  207 (933)
Q Consensus       195 ~L~~L~Ls~n~l~  207 (933)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	933
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-54
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-26
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-54
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-15
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		4e-07
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  212 bits (539), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 209/674 (31%), Positives = 313/674 (46%), Gaps = 58/674 (8%)
Query: 196 LFEMNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLS 250
           L  ++L RN +  P+  +T L + + LK L++SSN L+   P  +S    L SLE LDLS
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 156
Query: 251 HNNFEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
            N+  G   +  + +    +L+ L +S    +  V     +    L  L ++  N +   
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGI 213
Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
           P FL     L++LD+S NKL G+F +  +    +L++L + +N F G   +P      L 
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQ 269
Query: 369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG 428
           +L ++ N F G++P  +      L  +D+S N F G +P   G    L  L LS N FSG
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 429 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS 488
            L    +     L++LDLS N F G+      NL                       S S
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SAS 366
Query: 489 LQVLDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
           L  LD+S+N  SG I P+   N  + L+ L +  N   G +P  L+N   L  L +S N 
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 548 LSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606
           LSG I SSL +LS +  L L  N L G IP EL     L TL L  N  +G IP  ++  
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDV 664
           +NL ++ L  N L G IP  + +L+ LA++ LS N FSG+IP    +  S  W   + ++
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 665 LNGSK-----LNSPELDEEIEFGS----LGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
            NG+        S ++      G     + N+       G    L     R+    R+  
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 716 EFAMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXX 769
                    +Y G       N   +  LD+S N L+G IP +IG +  +           
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
           GSIP+   +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF TF
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 726
Query: 830 DESSYRGNPSLCAW 843
             + +  NP LC +
Sbjct: 727 PPAKFLNNPGLCGY 740

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 153/526 (29%), Positives = 226/526 (42%), Gaps = 75/526 (14%)
Query: 299 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNSF---- 353
           L+  ++NGS   F      L  LDLS N L G   T   L +   L+ L + +N+     
Sbjct: 81  LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 354 --SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ----KLMYMDISKNCFEGNIP 407
             SG L+L     + L  LD+S N+  G   + +G +L     +L ++ IS N   G++ 
Sbjct: 140 KVSGGLKL-----NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD 192
Query: 408 YSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRH 467
            S      L  LD+S N FS G+    +  C +L+ LD+S N   G F       T L+ 
Sbjct: 193 VS--RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527
           L   +N F G I    L   SLQ L ++ N  +G IP ++      L  L +S NH  G 
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 528 VPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFR-SCK 584
           VP    +   L  L +S N  SG  P+ + L +  ++ L L  N  +G +P  L   S  
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 585 LVTLNLRDNTFSGRIPHQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 642
           L+TL+L  N FSG I   +  N  + L+ L L  N   G IP  L    +L  + LS N 
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 643 FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 702
            SG+IP    ++             SKL   +L                       WL+ 
Sbjct: 427 LSGTIPSSLGSL-------------SKLRDLKL-----------------------WLNM 450
Query: 703 LEKRAAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTGEIPSDIGQ 754
           LE     +       E + ++F      EI +G SN   +  + LS N+LTGEIP  IG+
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 755 LQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 800
           L+ +           G+IP    + + +  LD++ N   G IP  +
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 566 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 620
           L  + +NG + G  F+ S  L +L+L  N+ SG +     +   S L+FL +  N L   
Sbjct: 81  LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 621 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 673
           G +   L +L  L ++DLS N  SG      ANV+ W V SD         ++G+K+ S 
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 189
Query: 674 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 729
           ++D      +EF  + +N  S T        SAL+       ++  +F+          S
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 241
Query: 730 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 788
               +  L++S NQ  G IP     L+++           G IP+  S     +  LD+S
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
            N   G +PP   + + L    +S NN SG  P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 209/678 (30%), Positives = 315/678 (46%), Gaps = 58/678 (8%)
Query: 196 LFEMNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLS 250
           L  ++L RN +  P+  +T L + + LK L++SSN L+   P  +S    L SLE LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 159
Query: 251 HNNFEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
            N+  G   +  + +    +L+ L +S    +  V     +    L  L ++  N +   
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGI 216
Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
           P FL     L++LD+S NKL G+F +  +    +L++L + +N F G   +P      L 
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQ 272
Query: 369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG 428
           +L ++ N F G++P  +      L  +D+S N F G +P   G    L  L LS N FSG
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 429 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS 488
            L    +     L++LDLS N F G+      NL                       S S
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SAS 369
Query: 489 LQVLDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
           L  LD+S+N  SG I P+   N  + L+ L +  N   G +P  L+N   L  L +S N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 548 LSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606
           LSG I SSL +LS +  L L  N L G IP EL     L TL L  N  +G IP  ++  
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDV 664
           +NL ++ L  N L G IP  + +L+ LA++ LS N FSG+IP    +  S  W   + ++
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 665 LNGSKL-----NSPELDEEIEFGS----LGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
            NG+        S ++      G     + N+       G    L     R+    R+  
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 716 EFAMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXX 769
                    +Y G       N   +  LD+S N L+G IP +IG +  +           
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
           GSIP+   +L+ +  LD+S NKL G+IP  ++AL  L+  ++S NNLSG  P+ GQF TF
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 830 DESSYRGNPSLCAWLIQQ 847
             + +  NP LC + + +
Sbjct: 730 PPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 130/319 (40%), Gaps = 84/319 (26%)
Query: 528 VPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 585
           +P  L NL  L  L I   N L GPI  ++  L+ + +L +    ++G IP  L +   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFS 644
           VTL+   N  SG +P  I+   NL  +   GN + G IPD      KL   M +SRN+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 645 GSIPPCFANV-LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 703
           G IPP FAN+ L++   S ++L G        D  + FGS  N +  +           L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEG--------DASVLFGSDKNTQKIH-----------L 228
Query: 704 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXX 763
            K +   +  ++  +           N+N   GLDL  N++                   
Sbjct: 229 AKNSLAFDLGKVGLS----------KNLN---GLDLRNNRI------------------- 256
Query: 764 XXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 823
                 G++P+  + LK + SL++S+N L G+I                        P  
Sbjct: 257 -----YGTLPQGLTQLKFLHSLNVSFNNLCGEI------------------------PQG 287
Query: 824 GQFATFDESSYRGNPSLCA 842
           G    FD S+Y  N  LC 
Sbjct: 288 GNLQRFDVSAYANNKCLCG 306

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 162/348 (46%), Gaps = 38/348 (10%)
Query: 184 SQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTS 243
           S T +G+C++ ++  +NL+++       +  +  TR++ LD+++  LNG LPS I  + S
Sbjct: 244 SATFEGLCDM-SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNS 301
Query: 244 LEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCN 303
           L+ L L+ N+F+ +  +++ A+   L  L +      L + T        L  L L+  +
Sbjct: 302 LKKLVLNANSFDQLCQINA-ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSD 360
Query: 304 LNGSYPDF----LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQL 359
           +  S  D     L +  HL+YL+LS+N+ +G       +  P+LE+L             
Sbjct: 361 IEAS--DCCNLQLKNLRHLQYLNLSYNEPLG-LEDQAFKECPQLELL------------- 404
Query: 360 PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL 419
                      D++  +   K PH+    L  L  +++S    + +  +    +++L  L
Sbjct: 405 -----------DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 420 DLSRNYF-SGGLSQS-VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG 477
           +L  N F  G +S++ ++    SLE+L LS+ N        +  L  + HL   +N+ +G
Sbjct: 454 NLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Query: 478 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 525
              D L     L  L++++N +    PH +   S +  I+++S N L+
Sbjct: 514 DSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQ-SIINLSHNPLD 559

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNN 497
           S   L+ + N F    F     L RL+ L  + N      K  L++   +SL+ LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557
            L+ H       ++  + +L++S N L G+V   L    ++++LD+  NR+        +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471
Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP------HQINEHSNL 609
           L +++ L++  N L  +  G   R   L  + L DN +    P        IN+HS +
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 53/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 50  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 106
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+ N    +   + L + Q +
Sbjct: 107 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGLTSLQQL 160
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
             G    +L       L +   L+ LD+S NK+        L N   LE L+  NN  S 
Sbjct: 161 SFGNQVTDLKP-----LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 212
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
           I  L       L +LD +S N   G    ++G +  L  L  +D++ N      P S   
Sbjct: 213 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 262
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
           + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + + Y N 
Sbjct: 263 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 319
Query: 462 ---------LTRLRHLYFENNNFS 476
                    LT+L+ L+F NN  S
Sbjct: 320 ISDISPVSSLTKLQRLFFANNKVS 343

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 65/330 (19%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 46  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+  NT+          S + 
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS--NTI----------SDIS 145
Query: 296 VL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
            L GLT   + N      D   L +   L+ LD+S NK+        L N   LE L+  
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIAT 202
Query: 350 NNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNI 406
           NN  S I  L       L +LD +S N   G    ++G +  L  L  +D++ N      
Sbjct: 203 NNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 407 PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFF 456
           P S   + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + 
Sbjct: 255 PLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 457 SEYMN----------LTRLRHLYFENNNFS 476
           + Y N          LT+L+ L+F NN  S
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFSNNKVS 339

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 53/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 51  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 107
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+ N    +   + L + Q +
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGLTSLQQL 161
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
             G    +L       L +   L+ LD+S NK+        L N   LE L+  NN  S 
Sbjct: 162 SFGNQVTDLKP-----LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 213
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
           I  L       L +LD +S N   G    ++G +  L  L  +D++ N      P S   
Sbjct: 214 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 263
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
           + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + + Y N 
Sbjct: 264 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320
Query: 462 ---------LTRLRHLYFENNNFS 476
                    LT+L+ L+F NN  S
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVS 344

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 65/330 (19%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 46  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+  NT+          S + 
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS--NTI----------SDIS 145
Query: 296 VL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
            L GLT   + N      D   L +   L+ LD+S NK+        L N   LE L+  
Sbjct: 146 ALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN---LESLIAT 202
Query: 350 NNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNI 406
           NN  S I  L       L +LD +S N   G    ++G +  L  L  +D++ N      
Sbjct: 203 NNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLA 254
Query: 407 PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFF 456
           P S   + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + 
Sbjct: 255 PLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 457 SEYMN----------LTRLRHLYFENNNFS 476
           + Y N          LT+L+ L+F NN  S
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFYNNKVS 339

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 189/506 (37%), Gaps = 88/506 (17%)
Query: 131 YDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTN 187
           Y S++   D L SL +L+IL++ HN   Y D S+F +   L     L L  N++     +
Sbjct: 32  YISELWTSDIL-SLSKLRILIISHNRIQYLDISVFKFNQELE---YLDLSHNKLVKISCH 87
Query: 188 QGICELKNLFEMNLERN-FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEY 246
             +    NL  ++L  N F   P+     N+++LK L +S+  L  S    I++L   + 
Sbjct: 88  PTV----NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Query: 247 LDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG 306
           L +    +        L + +     ++   N   H   +  + T   + L   KC L  
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203
Query: 307 SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKN-----NSFSGILQLPK 361
           +   + L              ++       L+ NPKL  L L N     NSF  ILQL  
Sbjct: 204 NKCSYFL-------------SILAK-----LQTNPKLSNLTLNNIETTWNSFIRILQL-- 243
Query: 362 AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDL 421
             H  + +  IS    +G+L                       +  YS   +K LS+  +
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFR--------------------DFDYSGTSLKALSIHQV 283
Query: 422 SRNYFSGGLSQSVVTGCFS-------------------------LELLDLSNNNFEGQFF 456
             + F  G  QS +   FS                            LD SNN      F
Sbjct: 284 VSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 457 SEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 514
               +LT L  L  + N      KI +      SLQ LDIS N +S        +++  L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574
             L+MS N L   +   L    R+++LD+  N++       + L +++ L++  N L  +
Sbjct: 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 575 IPGELFRSCKLVTLNLRDNTFSGRIP 600
             G   R   L  + L  N +    P
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPWDCSCP 485

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
           EL S+D    I   +S + +   ++ L  ++ L LG N   D   S L  L +L  LIL 
Sbjct: 39  ELNSID---QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILT 93
Query: 178 WNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
            N+++ S  N    +L NL E+ L  N + S        LT L  L+++ NQL      V
Sbjct: 94  GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 238 ISNLTSLEYLDLSHNNF----EGMF 258
              LT+L  LDLS+N      EG+F
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVF 177

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 52/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 46  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+ N    +   + L  + L 
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGL--TSLQ 154
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
            L  +   +    P  L +   L+ LD+S NK+        L N   LE L+  NN  S 
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 209
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
           I  L       L +LD +S N   G    ++G +  L  L  +D++ N      P S   
Sbjct: 210 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 259
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
           + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + + Y N 
Sbjct: 260 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
Query: 462 ---------LTRLRHLYFENNNFS 476
                    LT+L+ L+F NN  S
Sbjct: 317 ISDISPVSSLTKLQRLFFSNNKVS 340

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 52/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 46  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+ N    +   + L  + L 
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGL--TSLQ 154
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
            L  +   +    P  L +   L+ LD+S NK+        L N   LE L+  NN  S 
Sbjct: 155 QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 209
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
           I  L       L +LD +S N   G    ++G +  L  L  +D++ N      P S   
Sbjct: 210 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 259
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
           + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + + Y N 
Sbjct: 260 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
Query: 462 ---------LTRLRHLYFENNNFS 476
                    LT+L+ L+F NN  S
Sbjct: 317 ISDISPVSSLTKLQRLFFYNNKVS 340

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 52/324 (16%)
Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  +R+ G ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P
Sbjct: 46  LQADRL-GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP 102
Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+L  L L +N    + PL +L N ++LE   LS+ N    +   + L  + L 
Sbjct: 103 --LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS-NTISDISALSGL--TSLQ 154
Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
            L  +   +    P  L +   L+ LD+S NK+        L N   LE L+  NN  S 
Sbjct: 155 QLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISD 209
Query: 356 ILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI--LQKLMYMDISKNCFEGNIPYSAGE 412
           I  L       L +LD +S N   G    ++G +  L  L  +D++ N      P S   
Sbjct: 210 ITPL-----GILTNLDELSLN---GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-- 259
Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG----------QFFSEYMN- 461
           + +L+ L L  N  S   + S + G  +L  L+L+ N  E            + + Y N 
Sbjct: 260 LTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
Query: 462 ---------LTRLRHLYFENNNFS 476
                    LT+L+ L+F NN  S
Sbjct: 317 ISDISPVSSLTKLQRLFFYNNKVS 340

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
           L  CL N++   ++ ++  ++        S     ++L+L +  F G FP   L +  +L
Sbjct: 301 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 354
Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
                 T N   +  +E  LP+ + + L     +  G           LKYLDLS N ++
Sbjct: 355 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410
Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
                               +++F G+ QL         HLD   +N +     ++ + L
Sbjct: 411 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 444
Query: 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449
           + L+Y+DIS              +  L +L ++ N F       + T   +L  LDLS  
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
             E    + + +L+ L+ L   +NNF            SLQVLD S N +       + +
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564
Query: 510 FSSELEILSMSKN 522
           F S L  L++++N
Sbjct: 565 FPSSLAFLNLTQN 577

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 36/237 (15%)
Query: 368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN--Y 425
            HL++    F G+ P    + L+ L  +  + N  +G   +S  ++  L  LDLSRN   
Sbjct: 307 QHLELVNCKF-GQFP---TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL-L 484
           F G  SQS   G  SL+ LDLS N       S ++ L +L HL F+++N     +  + L
Sbjct: 361 FKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 485 SSTSLQVLDIS------------NNMLSGHIPHWMGNFSSE------------LEILSMS 520
           S  +L  LDIS            N + S  +    GN   E            L  L +S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 521 KNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIP 576
           +  LE   P   N+L  L++L+++ N+L S P      L+S++ + L  N  +   P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
           L  CL N++   ++ ++  ++        S     ++L+L +  F G FP   L +  +L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 330
Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
                 T N   +  +E  LP+ + + L     +  G           LKYLDLS N ++
Sbjct: 331 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
                               +++F G+ QL         HLD   +N +     ++ + L
Sbjct: 387 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 420
Query: 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 449
           + L+Y+DIS              +  L +L ++ N F       + T   +L  LDLS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
             E    + + +L+ L+ L   +NNF            SLQVLD S N +       + +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 510 FSSELEILSMSKN 522
           F S L  L++++N
Sbjct: 541 FPSSLAFLNLTQN 553

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	933
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-168
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  507 bits (1308), Expect = e-168
 Identities = 204/848 (24%), Positives = 319/848 (37%), Gaps = 147/848 (17%)

Query: 27  ACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGR 86
             L  E   L+  K             ++L  W  +        + C +  V C     +
Sbjct: 8   QSLYREIHQLISFKDVLPD-------KNLLPDWSSN-------KNPCTFDGVTCR--DDK 51

Query: 87  VMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQ 146
           V  + L +   LN  +        S    L  L+SL LS +         +    +    
Sbjct: 52  VTSIDLSS-KPLNVGFSAVS----SSLLSLTGLESLFLSNSHING-----SVSGFKCSAS 101

Query: 147 LKILVLGHNYFDDSIFSY--LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERN 204
           L  L L  N     + +   L +   L  L +  N ++      G  +L +L  ++L  N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 205 FIGSPL---ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLS 261
            I                LK L IS N+++G +   +S   +LE+LD+S NNF    P  
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-- 217

Query: 262 SLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 321
            L + S L+ L +S                            L+G +   +     LK L
Sbjct: 218 FLGDCSALQHLDISG-------------------------NKLSGDFSRAISTCTELKLL 252

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 381
           ++S N+ VG  P   L++                           L +L ++ N F G++
Sbjct: 253 NISSNQFVGPIPPLPLKS---------------------------LQYLSLAENKFTGEI 285

Query: 382 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 441
           P  +      L  +D+S N F G +P   G    L  L LS N FSG L    +     L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 442 ELLDLSNNNFEGQFFSEYMNLT-RLRHLYFENNNFSGKI--KDGLLSSTSLQVLDISNNM 498
           ++LDLS N F G+      NL+  L  L   +NNFSG I          +LQ L + NN 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 499 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-N 557
            +G IP  + N S  L  L +S N+L G +P  L +L +LR L +  N L G I   L  
Sbjct: 406 FTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
           + ++E L L  N L G IP  L     L  ++L +N  +G IP  I    NL  L L  N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDE 677
              G IP +L   + L  +DL+ N F+G+IP                             
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG--------------------- 563

Query: 678 EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGL 737
                 +  N  +   +   +     ++         +EF      ++   S  N     
Sbjct: 564 -----KIAANFIAGKRYVYIKNDGMKKEC--HGAGNLLEFQGIRSEQLNRLSTRNP---C 613

Query: 738 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797
           +++     G          +++ L++S N LSG IP+   ++  +  L++ +N ++G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 798 PQLTALNFLSIFNVSYNNLS------------------------GRTPDKGQFATFDESS 833
            ++  L  L+I ++S N L                         G  P+ GQF TF  + 
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733

Query: 834 YRGNPSLC 841
           +  NP LC
Sbjct: 734 FLNNPGLC 741

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  279 bits (717), Expect = 1e-82
 Identities = 131/709 (18%), Positives = 231/709 (32%), Gaps = 97/709 (13%)

Query: 144 LKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLER 203
              + +L L HN       +       L +L + +N I   +      +L  L  +NL+ 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQH 82

Query: 204 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 263
           N +           T L  L + SN +     +      +L  LDLSHN       L + 
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQ 141

Query: 264 ANHSKLEGLLLSTRNN--TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 321
                L+ LLLS  N    L  +  +    S L  L L+   +    P        L  L
Sbjct: 142 VQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 322 DLSHNKLVGNFPTWLLR--NNPKLEVLLLKNNSFSGILQ--LPKAKHDFLHHLDISCNNF 377
            L++ +L  +    L     N  +  L L N+  S          K   L  LD+S NN 
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
                 +    L +L Y  +  N  +    +S   +  +  L+L R+             
Sbjct: 261 NVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS------------- 306

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
                   +S  +        +  L  L HL  E+N+  G   +      +L+ L +SN+
Sbjct: 307 ---FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 556
             S                       L     V L +   L IL++++N++S   + +  
Sbjct: 364 FTSL--------------------RTLTNETFVSLAHS-PLHILNLTKNKISKIESDAFS 402

Query: 557 NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615
            L  +E L L  N +   + G+ +R    +  + L  N +     +      +L+ L+L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 616 GNHLQG--PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673
              L+     P     L+ L ++DLS N  +         +    +              
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI-------------- 508

Query: 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 733
            LD       L +N            L+ L K A     +                 ++ 
Sbjct: 509 -LD-------LQHNN-----------LARLWKHANPGGPIYFL------------KGLSH 537

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
           +  L+L  N            L  +  ++L  N+L+      F+N   ++SL++  N +T
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 794 GQIPPQL-TALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 841
                    A   L+  ++ +N           F  +   ++   P L 
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  262 bits (671), Expect = 3e-76
 Identities = 121/595 (20%), Positives = 207/595 (34%), Gaps = 39/595 (6%)

Query: 92  LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILV 151
             N T LN  ++    L  + F    +L SLD+  N  +        +  + L  LK+L 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLN 79

Query: 152 LGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLI 211
           L HN              +L  L L  N I+  + N    + KNL  ++L  N + S  +
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 212 TCLKNLTRLKILDISSNQLNGSLPSVIS--NLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
                L  L+ L +S+N++       +     +SL+ L+LS N  +   P        +L
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRL 197

Query: 270 EGLLLSTRNN---TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL--LHQYHLKYLDLS 324
            GL L+       +L  K    L  + +  L L+   L+ +       L   +L  LDLS
Sbjct: 198 FGLFLN-NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 325 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN 384
           +N L            P+LE   L+ N+   +          + +L++  +  +  +   
Sbjct: 257 YNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 385 --MGVI------LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV- 435
               +       L+ L ++++  N   G        +  L  L LS ++ S     +   
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 436 --TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVL 492
                  L +L+L+ N         +  L  L  L    N    ++         ++  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 493 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSG 550
            +S N       +      S L+ L + +  L+   + P     L  L ILD+S N ++ 
Sbjct: 436 YLSYNKYLQLTRNSFALVPS-LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 551 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC--------KLVTLNLRDNTFSGRIPH 601
                L  L  +E L LQ N L  L                  L  LNL  N F      
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 602 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 656
              +   L+ + LG N+L             L  ++L +N  +      F     
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  260 bits (666), Expect = 2e-75
 Identities = 124/569 (21%), Positives = 206/569 (36%), Gaps = 44/569 (7%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
              L  L+ L+L  N  +      +  +      L  L L  N       +      +L 
Sbjct: 69  CQKLPMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS--PLITCLKNLTRLKILDISSNQL 230
           TL L  N +  ++      +L+NL E+ L  N I +       +   + LK L++SSNQ+
Sbjct: 125 TLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 231 NGSLPSVISNLTSLEYLDLSHNNFEGMFP--LSSLANHSKLEGLLLSTRNNTLHVKTENW 288
               P     +  L  L L++          L     ++ +  L LS  N+ L   +   
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS--NSQLSTTSNTT 241

Query: 289 ---LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEV 345
              L  + L +L L+  NLN    D       L+Y  L +N +   F   L      +  
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRY 300

Query: 346 LLLKNNSFSGIL---QLPKAKHDF------LHHLDISCNNFRGKLPHNMGVILQKLMYMD 396
           L LK +     +    LPK           L HL++  N+  G +  NM   L  L Y+ 
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLS 359

Query: 397 ISKNCFEGNIPYSAG----EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 452
           +S +        +          L +L+L++N  S  +     +    LE+LDL  N   
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIG 418

Query: 453 GQF-FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG--HIPHWMGN 509
            +    E+  L  +  +Y   N +    ++      SLQ L +    L      P     
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 510 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS---------GPIASSLNLSS 560
             + L IL +S N++       L  LE+L ILD+  N L+         GPI     LS 
Sbjct: 479 LRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 620
           +  L+L+ N  + +         +L  ++L  N  +       N   +L+ L L  N + 
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 621 GPIPDQLC-QLQKLAMMDLSRNKFSGSIP 648
                      + L  +D+  N F  +  
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  233 bits (597), Expect = 6e-66
 Identities = 115/638 (18%), Positives = 208/638 (32%), Gaps = 96/638 (15%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
              ++ D S  +L   +P  +   T++  L+L+HN      P ++   +S+L  L +   
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVG-F 58

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
           N    ++ E       L VL L    L+           +L  L L  N +         
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPF 117

Query: 338 RNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI-LQK 391
                L  L L +N  S       +QL       L  L +S N  +      + +     
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLEN-----LQELLLSNNKIQALKSEELDIFANSS 172

Query: 392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF--SLELLDLSNN 449
           L  +++S N  +   P     +  L  L L+       L++ +       S+  L LSN+
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 450 NFEG--QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 507
                       +  T L  L    NN +    D       L+   +  N +     H +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 508 GNFSSELEILSMSKNHLEGNV---------PVQLNNLERLRILDISENRLSGPIASSL-N 557
               + +  L++ ++  + ++               L+ L  L++ +N + G  ++    
Sbjct: 293 HGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 558 LSSVEHLSLQKNALNGL-IPGELFRSC---KLVTLNLRDNTFSGRIPHQINEHSNLRFLL 613
           L ++++LSL  +  +   +  E F S     L  LNL  N  S       +   +L  L 
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 614 LGGNHLQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 672
           LG N +   +  Q    L+ +  + LS NK+       FA V S +              
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR------------- 458

Query: 673 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 732
             L        L               L  ++   +                      + 
Sbjct: 459 --LM-------LRRVA-----------LKNVDSSPSP------------------FQPLR 480

Query: 733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS--------GSIPESFSNLKMIES 784
            +T LDLS N +       +  L+ +  L+L +N+L+        G        L  +  
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 785 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
           L++  N            L  L I ++  NNL+     
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (586), Expect = 2e-64
 Identities = 105/548 (19%), Positives = 185/548 (33%), Gaps = 64/548 (11%)

Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNT 167
           + F   + L +LDLS N  +         +   L+ L+ L+L +N               
Sbjct: 115 NPFVKQKNLITLDLSHNGLS----STKLGTQVQLENLQELLLSNNKIQALKSEELDIFA- 169

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL---ITCLKNLTRLKILD 224
             SL  L L  N+I+          +  LF + L    +G  L   +      T ++ L 
Sbjct: 170 NSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 225 ISSNQLNGSLPSVIS--NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
           +S++QL+ +  +       T+L  LDLS+NN        S A   +LE   L        
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLE------- 280

Query: 283 VKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF--------PT 334
                               N+   +   L   ++++YL+L  +    +           
Sbjct: 281 ------------------YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 335 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN---MGVILQK 391
           +  +    LE L +++N   GI          L +L +S +    +   N   + +    
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 451
           L  ++++KN        +   +  L +LDL  N     L+     G  ++  + LS N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 452 EGQFFSEYMNLTRLRHLYFENNNFSG--KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
                + +  +  L+ L                     +L +LD+SNN ++      +  
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 510 FSSELEILSMSKNHLE--------GNVPVQLNNLERLRILDISENRLSGPIASSL-NLSS 560
               LEIL +  N+L         G     L  L  L IL++  N           +L  
Sbjct: 503 LEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHL 619
           ++ + L  N LN L          L +LNL+ N  +            NL  L +  N  
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 620 QGPIPDQL 627
                   
Sbjct: 622 DCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (522), Expect = 6e-56
 Identities = 92/526 (17%), Positives = 169/526 (32%), Gaps = 66/526 (12%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
            +  D SH KL    P  L  N                           +  L+++ N  
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTN---------------------------ITVLNLTHNQL 37

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
           R     N      +L  +D+  N      P    ++  L +L+L  N  S  LS      
Sbjct: 38  RRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAF 95

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
           C +L  L L +N+ +    + ++    L  L   +N  S       +   +LQ L +SNN
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 498 MLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS- 555
            +       +  F+ S L+ L +S N ++   P   + + RL  L ++  +L   +    
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 556 ---LNLSSVEHLSLQKNALNGLIPGELF--RSCKLVTLNLRDNTFSGRIPHQINEHSNLR 610
              L  +S+ +LSL  + L+          +   L  L+L  N  +            L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 611 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKL 670
           +  L  N++Q      L  L  +  ++L R+    SI       +              L
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID----DFSFQWLKCL 331

Query: 671 NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK------RAAIDERVEIEFAMKNRYE 724
               L+       + +N        M+  L  L+         ++       F       
Sbjct: 332 E--HLN-------MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV------ 376

Query: 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIE 783
                  + +  L+L+ N+++         L  +  L+L  N +   +  + +  L+ I 
Sbjct: 377 ---SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
            + +SYNK           +  L    +    L         F   
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  196 bits (501), Expect = 3e-53
 Identities = 91/468 (19%), Positives = 161/468 (34%), Gaps = 34/468 (7%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSY 164
            +   FH +  L  L L+               L +   ++ L L ++      ++ F  
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
           L    +L  L L +N +     N     L  L    LE N I       L  L  ++ L+
Sbjct: 245 LK-WTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 225 ISSNQLNGSL---------PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           +  +    S+               L  LE+L++  N+  G    +       L+ L LS
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS 361

Query: 276 TRNNTLHVKTENW---LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 332
               +L   T      L  S L +L LTK  ++    D      HL+ LDL  N++    
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 333 PTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI--LQ 390
                R    +  + L  N +  + +   A    L  L +     +  +  +      L+
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLR 480

Query: 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS-------GGLSQSVVTGCFSLEL 443
            L  +D+S N            +++L +LDL  N  +        G     + G   L +
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 503
           L+L +N F+      + +L  L+ +    NN +        +  SL+ L++  N+++   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 504 PHWMGNFSSELEILSMSKNHLEGNVP-----VQLNNLERLRILDISEN 546
               G     L  L M  N  +         V   N     I ++S +
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  169 bits (430), Expect = 5e-44
 Identities = 84/435 (19%), Positives = 138/435 (31%), Gaps = 73/435 (16%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 473
              + D S    +      V      ++ +L+L++N       + +   ++L  L    N
Sbjct: 5   SHEVADCSHLKLT-----QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 474 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 533
             S    +       L+VL++ +N LS          ++ L  L +  N ++        
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFV 118

Query: 534 NLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGEL--FRSCKLVTLNL 590
             + L  LD+S N LS     +   L +++ L L  N +  L   EL  F +  L  L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 591 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC---QLQKLAMMDLSRNKFSGSI 647
             N      P   +    L  L L    L   + ++LC       +  + LS ++ S + 
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 648 PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRA 707
              F             L  + L    LD       L  N  +      + WL  LE   
Sbjct: 239 NTTFLG-----------LKWTNLT--MLD-------LSYNNLNVVGNDSFAWLPQLEY-- 276

Query: 708 AIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN- 766
                                          L  N +       +  L  +  LNL  + 
Sbjct: 277 -----------------------------FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 767 --------SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818
                   SL      SF  LK +E L++  N + G      T L  L   ++S +  S 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 819 RTPDKGQFATFDESS 833
           RT     F +   S 
Sbjct: 368 RTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (364), Expect = 1e-35
 Identities = 72/343 (20%), Positives = 116/343 (33%), Gaps = 61/343 (17%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           + S +V D S+  L+  +P    +  + + +L+++ N L            +L  LD+  
Sbjct: 3   TVSHEVADCSHLKLT-QVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 546 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 604
           N +S         L  ++ L+LQ N L+ L          L  L+L  N+      +   
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 605 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 664
           +  NL  L L  N L         QL+ L  + LS NK                      
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI----------- 167

Query: 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724
              S L   +L+       L +N+           +                F       
Sbjct: 168 FANSSLK--KLE-------LSSNQ-----------IKEFSPGC---------FH------ 192

Query: 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIG---QLQAILALNLSNNSLSGSIPESFSNLKM 781
                 + R+ GL L+  QL   +   +       +I  L+LSN+ LS +   +F  LK 
Sbjct: 193 -----AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 782 --IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
             +  LD+SYN L          L  L  F + YNN+      
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 3e-29
 Identities = 68/350 (19%), Positives = 126/350 (36%), Gaps = 41/350 (11%)

Query: 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKN 569
           +   E+   S   L   VP  L     + +L+++ N+L    A++    S +  L +  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629
            ++ L P    +   L  LNL+ N  S          +NL  L L  N +Q    +   +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 630 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV-------------GSDDVLNGSKLNSPELD 676
            + L  +DLS N  S +       + + +                 D+   S L   EL 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 677 ----EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 732
               +E   G          +F     L+ ++   ++ E++ +E A  +           
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLF-----LNNVQLGPSLTEKLCLELANTS----------- 223

Query: 733 RVTGLDLSCNQLTGEIPSDIGQLQ--AILALNLSNNSLSGSIPESFSNLKMIESLDISYN 790
            +  L LS +QL+    +    L+   +  L+LS N+L+    +SF+ L  +E   + YN
Sbjct: 224 -IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 791 KLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 840
            +       L  L  +   N+  +               D+ S++    L
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCL 331

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  244 bits (624), Expect = 2e-70
 Identities = 105/528 (19%), Positives = 172/528 (32%), Gaps = 32/528 (6%)

Query: 147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI 206
            K L L  N           + P L  L L    I+  +       L +L  + L  N I
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPI 88

Query: 207 GSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH 266
            S  +     L+ L+ L      L       I +L +L+ L+++HN  +        +N 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 267 SKLEGLLLSTRNNTLHVKTENWLP-----TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 321
           + LE L LS  +N +       L          + L L+   +N         +  L  L
Sbjct: 149 TNLEHLDLS--SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFL--------HHLDIS 373
            L +N    N     ++    LEV  L    F     L K     L            ++
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
             ++      ++   L  +    +     E    +S         L+L    F       
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ----- 318

Query: 434 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN--NFSGKIKDGLLSSTSLQV 491
                    L  L+  + +G      ++L  L  L    N  +F G        +TSL+ 
Sbjct: 319 -FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDISENRLSG 550
           LD+S N +     +++G    +LE L    ++L+         +L  L  LDIS      
Sbjct: 378 LDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 551 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSN 608
                   LSS+E L +  N+       ++F     L  L+L         P   N  S+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 609 LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 656
           L+ L +  N+           L  L ++D S N    S      +  S
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  243 bits (622), Expect = 4e-70
 Identities = 131/567 (23%), Positives = 213/567 (37%), Gaps = 37/567 (6%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNT 167
           L    F    ELQ LDLS              + +SL  L  L+L  N          + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI-GSPLITCLKNLTRLKILDIS 226
           L SL  L+     +   + N  I  LK L E+N+  N I    L     NLT L+ LD+S
Sbjct: 99  LSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 227 SNQLNGSLPSVISNLTSLEY----LDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
           SN++     + +  L  +      LDLS N    + P +      +L  L L    ++L+
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLN 215

Query: 283 V--KTENWLPTSQLIVLGLTKCNLNGSYPDFL------LHQYHLKYLDLSHNKLVGNFPT 334
           V       L   ++  L L +    G+   F       L    ++   L++     +   
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 335 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
            L      +    L + +   +     + +    HL++    F G+ P      L++L +
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTF 332

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG-GLSQSVVTGCFSLELLDLSNNNFEG 453
                    G   +S  ++  L  LDLSRN  S  G       G  SL+ LDLS N    
Sbjct: 333 TSNK-----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 454 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSS 512
              S ++ L +L HL F+++N     +  +  S  +L  LDIS+              SS
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 513 ELEILSMSKNHLEGNV-PVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA 570
            LE+L M+ N  + N  P     L  L  LD+S+ +L     ++  +LSS++ L++  N 
Sbjct: 447 -LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGPIPDQ--L 627
              L          L  L+   N        ++ +  S+L FL L  N        Q  L
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565

Query: 628 CQLQKLAMMDLSRNKFSGSIPPCFANV 654
             ++    + +   +   + P     +
Sbjct: 566 QWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  224 bits (573), Expect = 2e-63
 Identities = 112/616 (18%), Positives = 207/616 (33%), Gaps = 101/616 (16%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
              K LD+S N L         +   L+ LDLS    + +    +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILT-- 84

Query: 278 NNTLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 336
            N +           S L  L   + NL       + H   LK L+++HN +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 396
             N   LE L L +N    I          LH + +                    + +D
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLL------------------NLSLD 183

Query: 397 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF- 455
           +S N      P  A +   L  L L  N+ S  + ++ + G   LE+  L    F  +  
Sbjct: 184 LSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 456 --FSEYMNLTRLRHLYFENNNFS------GKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 507
               +   L  L +L  E    +        I D     T++    + +  +        
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--- 299

Query: 508 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQ 567
            +++   + L +          ++L +L+RL               S ++L S+E L L 
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF----SEVDLPSLEFLDLS 355

Query: 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 627
           +N L+                      F G         ++L++L L  N +   +    
Sbjct: 356 RNGLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 628 CQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 686
             L++L  +D   +          F ++ +                  LD       + +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY---------------LD-------ISH 430

Query: 687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG---SNVNRVTGLDLSCNQ 743
             +     G++  LS+LE          ++ A  +  E +     + +  +T LDLS  Q
Sbjct: 431 THTRVAFNGIFNGLSSLE---------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 744 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL 803
           L    P+    L ++  LN+S+N+        +  L  ++ LD S N +      +L   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 804 -NFLSIFNVSYNNLSG 818
            + L+  N++ N+ + 
Sbjct: 542 PSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  193 bits (492), Expect = 1e-52
 Identities = 103/476 (21%), Positives = 164/476 (34%), Gaps = 39/476 (8%)

Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI----LVLGHNYFDDSIFSYLN 166
             F  L  L+ LDLS N             LR L Q+ +    L L  N  +        
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERN------FIGSPLITCLKNLTRL 220
            +  L  L L  N    +     I  L  L    L          +     + L+ L  L
Sbjct: 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 221 KILDISSNQLNGS---LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
            I +     L+     +  + + LT++    L     E +   S    +   + L L   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELV-- 312

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG-NFPTWL 336
           N          L    L  L  T      ++ +  L    L++LDLS N L      +  
Sbjct: 313 NCKFGQFPTLKL--KSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQS 368

Query: 337 LRNNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
                 L+ L L  N    +    L L +     L HLD   +N +     ++ + L+ L
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 452
           +Y+DIS              +  L +L ++ N F       + T   +L  LDLS    E
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
               + + +L+ L+ L   +NNF            SLQVLD S N +       + +F S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 513 ELEILSMSKNHLEGNVPVQ--LNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 566
            L  L++++N        Q  L  ++  R L +   R+     S      V  L++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (465), Expect = 6e-49
 Identities = 86/499 (17%), Positives = 157/499 (31%), Gaps = 49/499 (9%)

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
                   ++P        +LD+S N  R    ++      +L  +D+S+   +     +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGA 71

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469
              +  LS L L+ N     L+    +G  SL+ L     N          +L  L+ L 
Sbjct: 72  YQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 470 FENNNF-SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS---ELEILSMSKNHLE 525
             +N   S K+ +   + T+L+ LD+S+N +       +            L +S N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 526 GNVPVQLNNLERLRILDISENRLSGPIASSL--NLSSVEHLSLQKNALNG------LIPG 577
              P     + RL  L +  N  S  +  +    L+ +E   L                 
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 578 ELFRSCKLVTLNLRDNT---FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ-LCQLQKL 633
            L   C L     R      +   I    N  +N+    L    ++           Q L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 634 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 693
              +L   KF         ++      S     G    S      +EF  L  N  S   
Sbjct: 310 ---ELVNCKFGQFPTLKLKSLKRLTFTS---NKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 694 FGM--WRWLSALEKRAAID------ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 745
                    ++L+    +D        +   F             + ++  LD   + L 
Sbjct: 364 CCSQSDFGTTSLKY---LDLSFNGVITMSSNF-----------LGLEQLEHLDFQHSNLK 409

Query: 746 GEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTAL 803
                 +   L+ ++ L++S+     +    F+ L  +E L ++ N       P   T L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 804 NFLSIFNVSYNNLSGRTPD 822
             L+  ++S   L   +P 
Sbjct: 470 RNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (334), Expect = 3e-32
 Identities = 68/397 (17%), Positives = 114/397 (28%), Gaps = 68/397 (17%)

Query: 103 DWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIF 162
           D++    + LF+ L  + S  L                       + L L +  F     
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 163 SYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLIT--CLKNLTRL 220
             L +L  L                    +L +L  ++L RN +             T L
Sbjct: 322 LKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 280
           K LD+S N +   + S    L  LE+LD  H+N + M   S   +   L  L +S  +  
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS--HT- 431

Query: 281 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNN 340
                                 +   ++         L+ L ++ N    NF   +    
Sbjct: 432 ----------------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
             L  L L       +                    F           L  L  +++S N
Sbjct: 470 RNLTFLDLSQCQLEQLSP----------------TAFNS---------LSSLQVLNMSHN 504

Query: 401 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
            F     +    +  L +LD S N+      Q +     SL  L+L+ N+F      +  
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

Query: 461 --NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 495
              +   R L  E                 +  L+I+
Sbjct: 565 LQWIKDQRQLLVEVERMECAT-PSDKQGMPVLSLNIT 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  234 bits (598), Expect = 1e-66
 Identities = 94/537 (17%), Positives = 170/537 (31%), Gaps = 18/537 (3%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
            + L+ S N+           +   L  L  L L              +   L TL+L  
Sbjct: 35  TECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI 238
           N +        +   K L  +   +  I S     L N   L+ L + SN ++       
Sbjct: 91  NPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 239 SNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLG 298
                L+ LD  +N          +++  +   L L+   N +         ++    L 
Sbjct: 150 FPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 299 LTKCNLNGSYPDFL--LHQYHLKYLDLSHNKLVGNFPTWLLRN-NPKLEVLLLKNNSFSG 355
                        L       L              P          +E + L+ + F  
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 356 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 415
           I          L  LD++  +   +LP  +   L  L  + +S N FE     SA     
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPS 326

Query: 416 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENN 473
           L+ L +  N     L    +    +L  LDLS+++ E          NL+ L+ L    N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 474 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 533
                  +       L++LD++   L              L++L++S + L+ +     +
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 534 NLERLRILDISENRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589
            L  L+ L++  N               L  +E L L    L+ +          +  ++
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 646
           L  N  +     +   H    +L L  NH+   +P  L  L +   ++L +N    +
Sbjct: 507 LSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  212 bits (542), Expect = 3e-59
 Identities = 101/521 (19%), Positives = 172/521 (33%), Gaps = 47/521 (9%)

Query: 147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI 206
            + L    N       +  + L +L  L L   +I              L  + L  N +
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPL 93

Query: 207 GSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH 266
                T L     LK L      ++      + N  +LE L L  N+      L      
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPT 152

Query: 267 SKLEGLLLSTRNNTLHVKTENW---LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL 323
            KL+ L     NN +H  ++     L  +  + L L   ++              + L+ 
Sbjct: 153 EKLKVLDFQ--NNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNF 209

Query: 324 SHNKLVGNFPTWLLRNN-PKLEVLLLKNNSFSGILQ--LPKAKHDFLHHLDISCNNFRGK 380
              + +      L  +    L +   ++     I            +  +++  + F   
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN- 268

Query: 381 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 440
                           IS N F             L  LDL+  + S     S + G  +
Sbjct: 269 ----------------ISSNTFHC--------FSGLQELDLTATHLSEL--PSGLVGLST 302

Query: 441 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNML 499
           L+ L LS N FE        N   L HL  + N    ++  G L +  +L+ LD+S++ +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 500 --SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 556
             S      + N S  L+ L++S N              +L +LD++  RL    A S  
Sbjct: 363 ETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 557 -NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN---EHSNLRFL 612
            NL  ++ L+L  + L+            L  LNL+ N F      + N       L  L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
           +L    L          L+ +  +DLS N+ + S     ++
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (540), Expect = 8e-59
 Identities = 114/611 (18%), Positives = 201/611 (32%), Gaps = 96/611 (15%)

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279
            + L+ S N L     +  S L +L +LDL+      +    +  +  +L+ L+L+   N
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLT--AN 91

Query: 280 TLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR 338
            L    E  L     L  L   +  ++      L +Q  L+ L L  N +  +       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGF 150

Query: 339 NNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQKLMYMD 396
              KL+VL  +NN+   +     +K D   L                         + ++
Sbjct: 151 PTEKLKVLDFQNNAIHYL-----SKEDMSSLQQA--------------------TNLSLN 185

Query: 397 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG----GLSQSVVTGCFSLELLDLSNNNFE 452
           ++ N   G I   A +      L+            GL  S +   +     D+ + +  
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
              F     ++ +  +  + + F     +     + LQ LD++   LS  +P  +   S+
Sbjct: 245 PAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST 302

Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL--NLSSVEHLSLQKNA 570
            L+ L +S N  E    +  +N   L  L I  N     + +    NL ++  L L  + 
Sbjct: 303 -LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 571 LN--GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QL 627
           +        +L     L +LNL  N           E   L  L L    L+        
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 628 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 687
             L  L +++LS +    S    F  +               L    L+       L  N
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGL-------------PALQ--HLN-------LQGN 459

Query: 688 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 747
                       L  L                             R+  L LS   L+  
Sbjct: 460 HFPKGNIQKTNSLQTLG----------------------------RLEILVLSFCDLSSI 491

Query: 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 807
                  L+ +  ++LS+N L+ S  E+ S+LK I  L+++ N ++  +P  L  L+   
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550

Query: 808 IFNVSYNNLSG 818
             N+  N L  
Sbjct: 551 TINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (513), Expect = 3e-55
 Identities = 112/613 (18%), Positives = 200/613 (32%), Gaps = 97/613 (15%)

Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 280
           K  +  +  LN  +P  + N  S E L+ S N    +   ++ +    L           
Sbjct: 15  KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQN-TTFSRLINLT---------- 60

Query: 281 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNN 340
                           L LT+C +   + D    Q+ L  L L+ N L+       L   
Sbjct: 61  ---------------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGP 104

Query: 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
             L+ L       S I  +P      L  L +  N+    +    G   +KL  +D   N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNN 163

Query: 401 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
                       +++ + L L+ N       +         + L+          F    
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 461 N--LTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 516
           N  +  L    FE+ +           L   S++ +++  +       +    FS  L+ 
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQE 282

Query: 517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLI 575
           L ++  HL   +P  L  L  L+ L +S N+       S  N  S+ HLS++ N     +
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 576 PGELFRSC-KLVTLNLRDN--TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 632
                 +   L  L+L  +    S     Q+   S+L+ L L  N       +   +  +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 633 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNT 692
           L ++DL+  +            L              L    L+       L ++    +
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLH------------LLK--VLN-------LSHSLLDIS 440

Query: 693 MFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI 752
              ++  L AL+                                L+L  N          
Sbjct: 441 SEQLFDGLPALQH-------------------------------LNLQGNHFPKGNIQKT 469

Query: 753 GQLQ---AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF 809
             LQ    +  L LS   LS     +F++LKM+  +D+S+N+LT      L+ L  + + 
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL- 528

Query: 810 NVSYNNLSGRTPD 822
           N++ N++S   P 
Sbjct: 529 NLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (493), Expect = 1e-52
 Identities = 88/474 (18%), Positives = 155/474 (32%), Gaps = 20/474 (4%)

Query: 193 LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252
             +   +    N + +   T    L  L  LD++  Q+         +   L+ L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 253 NFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT-SQLIVLGLTKCNLNGSYPDF 311
                   ++L+    L+ L        +       L     L  L L   +++      
Sbjct: 92  PLIF-MAETALSGPKALKHLFFI--QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEV--LLLKNNSFSGILQLPKAKHDFLHH 369
                 LK LD  +N +        + +  +     L L  N  +GI +           
Sbjct: 149 GFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAFDSAVFQS 206

Query: 370 LDISCNNFRGKLPHNM-GVILQKLMYMDISKNCFEGNIPYSAGEMKELSL--LDLSRNYF 426
           L+         +   +    +Q L          E   P     + E+S+  ++L ++YF
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS 486
              +S +       L+ LDL+  +   +  S  + L+ L+ L    N F    +    + 
Sbjct: 267 F-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDIS 544
            SL  L I  N     +          L  L +S + +E      +QL NL  L+ L++S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 545 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQ 602
            N        +      +E L L    L        F++   L  LNL  +         
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 603 INEHSNLRFLLLGGNHLQGPI---PDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
            +    L+ L L GNH         + L  L +L ++ LS    S      F +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (390), Expect = 3e-39
 Identities = 69/394 (17%), Positives = 123/394 (31%), Gaps = 60/394 (15%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
           S E L+ S N       + +  L  L  L           +D   S   L  L ++ N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NL 558
                  +    + L+ L   +  +     + L+N + L  L +  N +S          
Sbjct: 94  IFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 559 SSVEHLSLQKNALNGLIPGEL--FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
             ++ L  Q NA++ L   ++   +    ++LNL  N  +G I     + +  + L  GG
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGG 211

Query: 617 NHLQGPIPDQL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 674
                 I   L    +Q L +            P  F                 +++   
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG-------------LCEMSVES 258

Query: 675 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 734
           ++       L  +   N     +   S L++                             
Sbjct: 259 IN-------LQKHYFFNISSNTFHCFSGLQE----------------------------- 282

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 794
             LDL+   L+ E+PS +  L  +  L LS N        S SN   +  L I  N    
Sbjct: 283 --LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 795 QIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFA 827
           ++    L  L  L   ++S++++        Q  
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (338), Expect = 9e-33
 Identities = 80/420 (19%), Positives = 141/420 (33%), Gaps = 75/420 (17%)

Query: 90  LSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149
           L   +   +N    +F  ++ + FH    LQ LDL+    +          L  L  LK 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-----SGLVGLSTLKK 305

Query: 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS- 208
           LVL  N F++      +  PSL  L +  N          +  L+NL E++L  + I + 
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 209 -PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
                 L+NL+ L+ L++S N+              LE LDL+    +     S   N  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 268 KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 327
                                                             LK L+LSH+ 
Sbjct: 426 -------------------------------------------------LLKVLNLSHSL 436

Query: 328 LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPK---AKHDFLHHLDISCNNFRGKLPHN 384
           L       L    P L+ L L+ N F                L  L +S  +    +  +
Sbjct: 437 LDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQH 494

Query: 385 MGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 444
               L+ + ++D+S N    +   +   +K +  L+L+ N+ S  +  S++        +
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS-IILPSLLPILSQQRTI 552

Query: 445 DLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 500
           +L  N  +      +F E+      +    E+            +   L+ + +S+  LS
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCE--------NPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 49/297 (16%), Positives = 80/297 (26%), Gaps = 58/297 (19%)

Query: 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 598
           +  +     L+  I  +L  +S E L    N L  +      R   L  L+L        
Sbjct: 15  KTYNCENLGLNE-IPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 599 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
                     L  L+L  N L       L   + L  +   +   S        N     
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ---- 128

Query: 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 718
                      L S  L        LG+N  S+           L+              
Sbjct: 129 ---------KTLES--LY-------LGSNHISSIKLPKGFPTEKLKV------------- 157

Query: 719 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA--ILALNLSNNSLSGSIPESF 776
                             LD   N +      D+  LQ    L+LNL+ N ++  I    
Sbjct: 158 ------------------LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGA 198

Query: 777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESS 833
            +  + +SL+    +    I   L      S++  ++ ++         F    E S
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           S    +  L      ++      +   + + +L L +N +S          + ++ LD  
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 789 YNKLTGQIPPQLTALNFLSI--FNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 844
            N +       +++L   +    N++ N+++G  P     A F   ++ G  +L    
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (584), Expect = 1e-64
 Identities = 80/637 (12%), Positives = 184/637 (28%), Gaps = 125/637 (19%)

Query: 204 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 263
            +   P ++   +  R+  L +     +G +P  I  LT LE L L  +  +    L   
Sbjct: 68  MWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 264 ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL--LHQYHLKYL 321
              S                                 + +   ++ D+        L   
Sbjct: 127 KGISANMSDEQ----------------------KQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNF 377
            ++ +    +      R   K   +   +N+ + +    ++L K     L    +  + F
Sbjct: 165 CINSDPQQKSIKK-SSRITLKDTQIGQLSNNITFVSKAVMRLTK-----LRQFYMGNSPF 218

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
             +         +     +                +K+L+ +++        L   +   
Sbjct: 219 VAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-A 271

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
              ++L++++ N                     E      +          +Q++ I  N
Sbjct: 272 LPEMQLINVACNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 498 ML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 556
            L +  +   +      L +L    N LEG +P    +  +L  L+++ N+++   A+  
Sbjct: 316 NLKTFPVETSLQKMKK-LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC 373

Query: 557 -NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSG-------RIPHQINEHS 607
                VE+LS   N L  +      +S   +  ++   N            +     +  
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 608 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 667
           N+  + L  N +     +       L+ ++L  N  +        +       +++  N 
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE------NENFKNT 487

Query: 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 727
             L    +D       L  N+           L+ L          +             
Sbjct: 488 YLLT--SID-------LRFNK-----------LTKLSD--------DFRA---------- 509

Query: 728 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSLSGSIPESFSNLKM 781
            + +  + G+DLS N  +   P+       +    + N      N      PE  +    
Sbjct: 510 -TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 782 IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818
           +  L I  N +   +  ++     +S+ ++  N    
Sbjct: 568 LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  211 bits (538), Expect = 2e-58
 Identities = 76/554 (13%), Positives = 179/554 (32%), Gaps = 54/554 (9%)

Query: 140 SLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM 199
           SL S  ++  L L        +   +  L  L  L L  +  + ++   G   +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLN-----GSLPSVISNLTSLEYLDLSHNNF 254
             ++        T +    R    D+  + +N      S+            +    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 255 EGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLH 314
                  ++   +KL    +   N+                           +      +
Sbjct: 196 TF-VS-KAVMRLTKLRQFYMG--NSPF----VAENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-------- 366
              L  +++ +   +   PT+ L+  P+++++ +  N      QL               
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 367 LHHLDISCNNFR-GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY 425
           +  + I  NN +   +  ++   ++KL  ++   N  EG +P + G   +L+ L+L+ N 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSG------- 477
            +  +  +       +E L  ++N  +      +  +++ +  + F  N           
Sbjct: 365 IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 478 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG-------NVPV 530
            +        ++  +++SNN +S          S  L  +++  N L         +   
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP-LSSINLMGNMLTEIPKNSLKDENE 482

Query: 531 QLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 588
              N   L  +D+  N+L+       +  L  +  + L  N+ +   P +   S  L   
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 589 NLRD------NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 642
            +R+      N      P  I    +L  L +G N ++  + +++     ++++D+  N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598

Query: 643 FSGSIPPCFANVLS 656
                       + 
Sbjct: 599 NISIDLSYVCPYIE 612

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  201 bits (514), Expect = 4e-55
 Identities = 78/581 (13%), Positives = 168/581 (28%), Gaps = 89/581 (15%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYL--NTLPSLCT 173
           L EL+ L L  +    + ++     + +    +       ++  +   Y        L  
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 174 LILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG- 232
             ++ +  + S             ++    N I   +   +  LT+L+   + ++     
Sbjct: 164 DCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 233 ------------------SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 274
                             +      NL  L  +++ +       P + L    +++ + +
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINV 280

Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT 334
           +   N                 +   +   +            ++ + + +N L      
Sbjct: 281 A--CNRG---------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 335 WLLRNNPKLEVLLLKNNSFSGIL----QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
             L+   KL +L    N   G L       K     L  L+++ N     +P N     +
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIK-----LASLNLAYNQITE-IPANFCGFTE 377

Query: 391 KLMYMDISKNCFEGNIP--YSAGEMKELSLLDLSRNYFSGGLSQSVVT------GCFSLE 442
           ++  +  + N  +  IP  + A  +  +S +D S N       ++            ++ 
Sbjct: 378 QVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 443 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-------KIKDGLLSSTSLQVLDIS 495
            ++LSNN         +   + L  +    N  +           +   ++  L  +D+ 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 496 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 555
            N L+     +       L  + +S N      P Q  N   L+   I   R        
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD------- 548

Query: 556 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615
                      Q N      P  +     L  L +  N     +  +I    N+  L + 
Sbjct: 549 ----------AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIK 595

Query: 616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 656
            N         +C   +  M  L  +K    I  C A  + 
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  193 bits (492), Expect = 3e-52
 Identities = 73/528 (13%), Positives = 142/528 (26%), Gaps = 59/528 (11%)

Query: 91  SLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAY-DSLRSLKQLKI 149
            +                  +           DL  +    D +  +   S R   +   
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187

Query: 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
           +    N     +   +  L  L    +  +          ICE          + +    
Sbjct: 188 IGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAE----NICEAWENENSEYAQQYKTED 242

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP-------LSS 262
           L     NL  L  +++ +      LP+ +  L  ++ ++++ N              L+ 
Sbjct: 243 LK--WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 263 LANHSKLEGLLLSTRNNTLHVKTENWLPT-SQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 321
                K++ + +   NN      E  L    +L +L      L G  P F   +  L  L
Sbjct: 301 APVGEKIQIIYIG-YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG-SEIKLASL 358

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI---LQLPKAKHDFLHHLDISCNNFR 378
           +L++N++    P        ++E L   +N    I             +  +D S N   
Sbjct: 359 NLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV--MSAIDFSYNEIG 415

Query: 379 GKLPHNMGVI------LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG---- 428
                N   +         +  +++S N               LS ++L  N  +     
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 429 --GLSQSVVTGCFSLELLDLSNNNFEGQFFS-EYMNLTRLRHLYFENNNFSGKIKDGLLS 485
                       + L  +DL  N             L  L  +    N+FS       L+
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           S++L+   I N                         N      P  +     L  L I  
Sbjct: 535 SSTLKGFGIRNQ-------------------RDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 546 NRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593
           N +           ++  L ++ N    +    +    +     L  +
Sbjct: 576 NDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 3e-15
 Identities = 25/225 (11%), Positives = 57/225 (25%), Gaps = 37/225 (16%)

Query: 602 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG----SIPPCFANVLSW 657
            +N +  +  L L G    G +PD + QL +L ++ L  +          P   +  +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 658 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 717
                  ++  K        E     + +  +S+                          
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK---------------------- 173

Query: 718 AMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 777
               +          +   +    N +T  +   + +L  +    + N+           
Sbjct: 174 --SIKKSSRITLKDTQ---IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 778 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
                   +  Y +       +   L  L+   V       + P 
Sbjct: 228 EN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 101 PYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFD-- 158
           P +     N +  +    L S+DL  N  T   K++      +L  L  + L +N F   
Sbjct: 473 PKNSLKDENENFKN-TYLLTSIDLRFNKLT---KLSDDFRATTLPYLVGIDLSYNSFSKF 528

Query: 159 -DSIF--SYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLK 215
                  S L             NR       +GI    +L ++ +  N I   +   + 
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRK-VNEKI- 585

Query: 216 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN 253
               + +LDI  N       S +          L ++ 
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 738 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-- 795
           +   +    +    +     +  L+L     SG +P++   L  +E L +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 796 --IPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATF 829
              P  ++A            +      D      F
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  215 bits (550), Expect = 4e-60
 Identities = 105/552 (19%), Positives = 176/552 (31%), Gaps = 53/552 (9%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
            +++DLS N            S  +  +L+ L L     +       + L  L  LIL  
Sbjct: 34  TKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSV 237
           N I+          L +L  +      + S     +  L  LK L+++ N ++   LP+ 
Sbjct: 90  NPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 238 ISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 297
            SNLT+L ++DLS+N  +    ++ L    +   + LS                     L
Sbjct: 149 FSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLS---------------------L 186

Query: 298 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL 357
            ++   ++    D       L  L L  N    N     L+N   L V  L    F    
Sbjct: 187 DMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 358 QLPKAKHDFLH--------HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
            L   +   +            ++  N            L  +  M ++           
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSI--KYLED 302

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469
             +  +   L + R      L Q        L+ L L+ N   G    + + L  L +L 
Sbjct: 303 VPKHFKWQSLSIIRC----QLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLD 356

Query: 470 FENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 527
              N  S         L + SL+ LD+S N     +          L+ L    + L+  
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE-LQHLDFQHSTLKRV 414

Query: 528 VPVQ-LNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-K 584
                  +LE+L  LDIS              L+S+  L +  N+        +F +   
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 585 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 644
           L  L+L             +    L+ L +  N+L         QL  L+ +D S N+  
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 645 GSIPPCFANVLS 656
            S         S
Sbjct: 535 TSKGILQHFPKS 546

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  213 bits (544), Expect = 2e-59
 Identities = 105/614 (17%), Positives = 197/614 (32%), Gaps = 105/614 (17%)

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279
            K +D+S N L        SN + L++LDLS    E +    +      L  L+L+   N
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILT--GN 90

Query: 280 TLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR 338
            +   +       + L  L   +  L       +     LK L+++HN +          
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 339 NNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
           N   L  + L  N    I    LQ  +        LD+S N                   
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF--------------- 195

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
             I    F+G          +L  L L  N+ S  + ++ +     L +  L    F+ +
Sbjct: 196 --IQDQAFQGI---------KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 455 FFSEYMNLT--------RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 506
              E    +         +        N             ++  + ++   +  ++   
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED- 302

Query: 507 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 566
                 + + LS+ +  L+    + L  L+ L    ++ N+ S      + L S+ +L L
Sbjct: 303 -VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISF-KKVALPSLSYLDL 357

Query: 567 QKNALNGLIPG--ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 624
            +NAL+           +  L  L+L  N     +         L+ L    + L+    
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 625 -DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS 683
                 L+KL  +D+S           F  +             + LN+ ++        
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-------------TSLNTLKMA------- 456

Query: 684 LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 743
            GN+   NT+  ++   + L                                 LDLS  Q
Sbjct: 457 -GNSFKDNTLSNVFANTTNLTF-------------------------------LDLSKCQ 484

Query: 744 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL 803
           L          L  +  LN+S+N+L       ++ L  + +LD S+N++           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 804 NFLSIFNVSYNNLS 817
             L+ FN++ N+++
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  212 bits (541), Expect = 4e-59
 Identities = 103/499 (20%), Positives = 170/499 (34%), Gaps = 31/499 (6%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
           +H L  L +L L+ N     S      S   L  L+ LV             +  L +L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKI----LDISSN 228
            L +  N I   +       L NL  ++L  N+I +  +  L+ L         LD+S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS-------TRNNTL 281
            ++  +         L  L L  N        + L N + L    L              
Sbjct: 192 PID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 282 HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNP 341
                  L    +    LT  N             ++  + L+   +        +  + 
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHF 307

Query: 342 KLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC 401
           K + L +         Q P     FL  L ++ N           V L  L Y+D+S+N 
Sbjct: 308 KWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNA 361

Query: 402 FEGNIPYSAGEMKELSL--LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG-QFFSE 458
              +   S  ++   SL  LDLS N     +  +   G   L+ LD  ++  +    FS 
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 459 YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILS 518
           +++L +L +L     N         L  TSL  L ++ N    +    +   ++ L  L 
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 519 MSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG 577
           +SK  LE       + L RL++L++S N L    +S    L S+  L    N +      
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 578 ELFRSCKLVTLNLRDNTFS 596
                  L   NL +N+ +
Sbjct: 540 LQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (475), Expect = 3e-50
 Identities = 93/594 (15%), Positives = 179/594 (30%), Gaps = 87/594 (14%)

Query: 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
           +   ++L  N +         N + L+ LD+S  ++          L  L  L L+ N  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 255 EGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLL 313
           +  F   S +  + LE L+         +++        L  L +    ++    P +  
Sbjct: 93  QS-FSPGSFSGLTSLENLVAV-ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 314 HQYHLKYLDLSHNKLVG---NFPTWLLRNNPKLEVLLLKNNSFSGI----LQLPKAKHDF 366
           +  +L ++DLS+N +     N   +L  N      L +  N    I     Q  K     
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK----- 205

Query: 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA------GEMKELSLLD 420
           LH L +  N     +       L  L    +    F+               + ++++ +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 421 LSRNY-FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI 479
               Y               ++  + L+  + +  +  +     + + L           
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 480 KDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLER 537
              L     L+ L ++ N  S             L  L +S+N L   G           
Sbjct: 324 TLDL---PFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFS 596
           LR LD+S N      A+ + L  ++HL  Q + L  +     F S  KL+ L++      
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 597 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIPPCFANVL 655
                     ++L  L + GN  +             L  +DLS+ +        F  + 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 656 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
             +                L+       + +N         +  L +L            
Sbjct: 498 RLQ---------------LLN-------MSHNNLLFLDSSHYNQLYSLST---------- 525

Query: 716 EFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 769
                                LD S N++           +++   NL+NNS++
Sbjct: 526 ---------------------LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (405), Expect = 3e-41
 Identities = 91/620 (14%), Positives = 179/620 (28%), Gaps = 153/620 (24%)

Query: 213 CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL 272
           C++ +  +        +L+  +P  I   +S + +DLS N  +      S +N S+L+  
Sbjct: 7   CIEVVPNI-TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQ-- 59

Query: 273 LLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 332
                                   L L++C +           +HL  L L+ N +   F
Sbjct: 60  -----------------------WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-F 95

Query: 333 PTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
                     LE L+      + +                                    
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASL------------------------------------ 119

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 452
                          +  G++  L  L+++ N+       +  +   +L  +DLS N  +
Sbjct: 120 -------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 453 GQFFSEYMNLTRLRHLYFE---NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
               ++   L     +      + N    I+D       L  L +  N  S +I      
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

Query: 510 FSSELEILSMSKNHLEGNVPVQ------LNNLERLRI--LDISENRLSGPIASSL-NLSS 560
             + L +  +     +    ++      +  L  + I    ++              L++
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 620
           V  +SL   ++  L   ++ +  K  +L++            +     L+ L L  N   
Sbjct: 287 VSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGS 341

Query: 621 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 680
             I  +   L  L+ +DLSRN  S S    +++           L  + L    LD    
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSGCCSYSD-----------LGTNSLR--HLD---- 382

Query: 681 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS 740
              L  N +   M   +  L  L+                                LD  
Sbjct: 383 ---LSFNGAI-IMSANFMGLEELQH-------------------------------LDFQ 407

Query: 741 CNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 799
            + L      S    L+ +L L++S  +        F  L  + +L ++ N         
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 800 -LTALNFLSIFNVSYNNLSG 818
                  L+  ++S   L  
Sbjct: 468 VFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  158 bits (401), Expect = 1e-40
 Identities = 91/553 (16%), Positives = 163/553 (29%), Gaps = 70/553 (12%)

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
           +P+S    + L+   L         +   L++LDLS  ++              L  L+L
Sbjct: 30  IPSS-TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLIL 87

Query: 349 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-NIP 407
             N          +    L +L          L       L  L  ++++ N      +P
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 408 YSAGEMKELSLLDLSRNYFSG---GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTR 464
                +  L  +DLS NY         Q +         LD+S N  +     +     +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205

Query: 465 LRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIP-------HWMGNFSSELEI 516
           L  L    N  S  I    L +   L V  +                    G     ++ 
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 576
             ++  +   +  V+ + L  +  + ++   +   +         + LS+ +  L     
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ--GPIPDQLCQLQKLA 634
            +L     L +L L  N  S  I  +     +L +L L  N L   G           L 
Sbjct: 325 LDLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 635 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN-------- 686
            +DLS N     +   F  +   +         S L    + E   F SL          
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLD---FQHSTLKR--VTEFSAFLSLEKLLYLDISY 433

Query: 687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG 746
             +     G++  L++L                                 L ++ N    
Sbjct: 434 TNTKIDFDGIFLGLTSLNT-------------------------------LKMAGNSFKD 462

Query: 747 EIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 805
              S++      +  L+LS   L       F  L  ++ L++S+N L          L  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 806 LSIFNVSYNNLSG 818
           LS  + S+N +  
Sbjct: 523 LSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  138 bits (350), Expect = 3e-34
 Identities = 72/404 (17%), Positives = 137/404 (33%), Gaps = 42/404 (10%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
           S + +DLS N  +      + N + L+ L                    L  L ++ N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSLN 557
               P      +S LE L   +  L       +  L  L+ L+++ N +      A   N
Sbjct: 93  QSFSPGSFSGLTS-LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 558 LSSVEHLSLQKNALNGLIPGEL----FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 613
           L+++ H+ L  N +  +   +L          ++L++  N     I  Q  +   L  L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELT 210

Query: 614 LGGNHLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG-SKLN 671
           L GN     I     Q L  L +  L   +F            +  +    ++ G   + 
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIFEPSIMEGLCDVT 262

Query: 672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK----RAAIDERVEIEFAMK------- 720
             E         L      +     +  L+ +        +I    ++    K       
Sbjct: 263 IDEFR-------LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315

Query: 721 -NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL 779
             + + +   ++  +  L L+ N+ +  I      L ++  L+LS N+LS S   S+S+L
Sbjct: 316 RCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 780 KM--IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
               +  LD+S+N     +      L  L   +  ++ L   T 
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.2 bits (219), Expect = 4e-18
 Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 6/172 (3%)

Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPS 170
           + F  LEELQ LD   +      +V  + +  SL++L  L + +             L S
Sbjct: 393 ANFMGLEELQHLDFQHSTL---KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQL 230
           L TL +  N  + +  +       NL  ++L +  +          L RL++L++S N L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 231 NGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
                S  + L SL  LD S N  E             L    L+  NN++ 
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLT--NNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 107 LLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSY-L 165
           +   S F  LE+L  LD+S      D           L  L  L +  N F D+  S   
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 166 NTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDI 225
               +L  L L   ++E          L  L  +N+  N +     +    L  L  LD 
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 226 SSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
           S N++  S   +     SL + +L++N+ 
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  211 bits (539), Expect = 4e-57
 Identities = 86/639 (13%), Positives = 182/639 (28%), Gaps = 96/639 (15%)

Query: 198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 257
             N E +  G      L N  R+  L ++     G +P  I  LT L+ L    ++    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 258 FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 317
             L         +          +H K        +L +  L +  +N +     + +  
Sbjct: 363 GRLFGD-EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 318 LKYLDLSHNKLVGNFPTWL---LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 374
              L  +    + N  T++   ++   KL+++   N+ F+                +   
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD-----NIAVDWEDANSDY 476

Query: 375 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ-- 432
                    +    L+ L  +++        +P    ++ EL  L+++ N          
Sbjct: 477 AKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 433 ------SVVTGCFSLELLDLSNNNFEGQFFSEYM-NLTRLRHLYFENNNFSGKIKDGLLS 485
                         +++  +  NN E    S  +  + +L  L   +N       +   +
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGT 593

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDIS 544
           +  L  L +  N +   IP     F+ ++E L  S N L+         ++  +  +D S
Sbjct: 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 545 ENRLSGPIA------SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 598
            N++                 +   ++L  N +             + T+ L +N  +  
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711

Query: 599 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
           IP                     P          L  +DL  NK + S+   F       
Sbjct: 712 IPENSL----------------KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR------ 748

Query: 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 718
                      L+   +D       +  N             S+   +            
Sbjct: 749 -----ATTLPYLS--NMD-------VSYNC-----------FSSFPTQP---------LN 774

Query: 719 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN 778
                              D   N++  + P+ I    +++ L + +N +     +    
Sbjct: 775 SSQLKAFGIRHQ------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ 828

Query: 779 LKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           L     LDI+ N         +       ++ + Y+   
Sbjct: 829 L---YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  203 bits (518), Expect = 1e-54
 Identities = 93/633 (14%), Positives = 191/633 (30%), Gaps = 94/633 (14%)

Query: 217 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 276
           LT+   + I   +    +    +     E LD  +  +      +++ + +      L  
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDM 310

Query: 277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 336
             +   V  +N     ++  L L      G  PD +     LK L    +    +   + 
Sbjct: 311 WGDQPGVDLDN---NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR-----GKLPHNMGVILQK 391
                       K+       ++       L+  D+  +          +  +  + L+ 
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 451
               +++ N     I  +   + +L ++  + + F+              E  +      
Sbjct: 428 TQIGNLT-NRITF-ISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQ 479

Query: 452 EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG---------H 502
                  + NL  L  +   N     ++ D L     LQ L+I+ N              
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 503 IPHWMGNFSSELEILSMSKNHLEG-NVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 561
           +          ++I  M  N+LE       L  + +L +LD   N++    A       +
Sbjct: 540 LADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG-TNVKL 597

Query: 562 EHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHS--NLRFLLLGGNH 618
             L L  N +   IP +       +  L    N     IP+  N  S   +  +    N 
Sbjct: 598 TDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 619 LQGPIPDQLC-----QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 673
           +     +  C     +    + + LS N+        FA              GS ++  
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT-------------GSPIS-- 700

Query: 674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 733
            +        L NN            ++++ + +   +                  N   
Sbjct: 701 TII-------LSNNL-----------MTSIPENSLKPKDGNY-------------KNTYL 729

Query: 734 VTGLDLSCNQLTGEIPSDI--GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISY-- 789
           +T +DL  N+LT  +  D     L  +  +++S N  S S P    N   +++  I +  
Sbjct: 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQR 787

Query: 790 ----NKLTGQIPPQLTALNFLSIFNVSYNNLSG 818
               N++  Q P  +T    L    +  N++  
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  190 bits (483), Expect = 4e-50
 Identities = 66/566 (11%), Positives = 145/566 (25%), Gaps = 89/566 (15%)

Query: 90  LSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149
             +    +      +  +         + L   DL  +    + ++        +     
Sbjct: 373 PDMSEERKHRIRMHYKKMF----LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
            +         I   +  L  L  +    +               +  + N +       
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYEN 482

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
                 NL  L  +++ +      LP  + +L  L+ L+++ N       L +       
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT---- 538

Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
                                                   D       ++   + +N L 
Sbjct: 539 -------------------------------------RLADDEDTGPKIQIFYMGYNNLE 561

Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
               +  L+   KL +L   +N    +          L  L +  N     +P +     
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK--LTDLKLDYNQIEE-IPEDFCAFT 618

Query: 390 QKLMYMDISKNCFEGNIP--YSAGEMKELSLLDLSRNYFSG----GLSQSVVTGCFSLEL 443
            ++  +  S N  +  IP  ++A  +  +  +D S N                   +   
Sbjct: 619 DQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS-------GKIKDGLLSSTSLQVLDISN 496
           + LS N  +      +   + +  +   NN  +               ++  L  +D+  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 556
           N L+     +       L  + +S N      P Q  N  +L+   I             
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ---------- 786

Query: 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
                     + N +    P  +     L+ L +  N     +  ++     L  L +  
Sbjct: 787 -------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIAD 836

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNK 642
           N         +C   +  M  L  +K
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  186 bits (474), Expect = 7e-49
 Identities = 62/507 (12%), Positives = 143/507 (28%), Gaps = 50/507 (9%)

Query: 183 GSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLT 242
           G Q    +     +  ++L        +   +  LT LK+L   ++    S         
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 243 SLEYLDLSHNNFEGMFPLSSLANHSKLEGL-----LLSTRNNTLHVKTENWLPTSQLIVL 297
           + +  +   +     +    L    +L         ++       +K ++ +      + 
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 298 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL 357
            LT  N        +     L+ +  +++         +   +   +      N      
Sbjct: 432 NLT--NRITFISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSDYAKQYENEELSWS 488

Query: 358 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG---------NIPY 408
            L       L  +++       +LP  +   L +L  ++I+ N              +  
Sbjct: 489 NLKD-----LTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 409 SAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
                 ++ +  +  N      + + +     L LLD  +N         +    +L  L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDL 600

Query: 469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS-SELEILSMSKNHLEGN 527
             + N      +D    +  ++ L  S+N L   IP+     S   +  +  S N +   
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 528 VPVQLNNLE-----RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGL------- 574
                 +++         + +S N +           S +  + L  N +  +       
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQK 632
             G    +  L T++LR N  +  +           L  + +  N      P Q     +
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777

Query: 633 LAMMDLSR------NKFSGSIPPCFAN 653
           L    +        N+     P     
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  160 bits (406), Expect = 2e-40
 Identities = 83/452 (18%), Positives = 147/452 (32%), Gaps = 70/452 (15%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAY---------------DSLRSLKQLKILVLGHNYF 157
              L +LQ +  + + FTYD+    +                S  +LK L  + L +   
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 158 DDSIFSYLNTLPSLCTLILHWNRIEGSQTNQG--------ICELKNLFEMNLERNFIGS- 208
              +  +L  LP L +L +  NR   +   +               +    +  N +   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 209 PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 268
           P    L+ + +L +LD   N++   L +       L  L L +N  E   P    A   +
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQ 620

Query: 269 LEGLLLSTRNNTLHV--KTENWLPTSQLIVLGLTKCNLNGSYPDFL-----LHQYHLKYL 321
           +EGL  S  +N L       N      +  +  +   +     +           +   +
Sbjct: 621 VEGLGFS--HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-------LHHLDISC 374
            LS+N++   FPT L      +  ++L NN  + I +      D        L  +D+  
Sbjct: 679 TLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 375 NNFRGKLPHNMGVI-LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
           N     L  +     L  L  MD+S NCF    P       +L    +            
Sbjct: 738 NKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ--------- 786

Query: 434 VVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 493
                      D   N    Q+ +       L  L   +N+   K+ + L     L +LD
Sbjct: 787 ----------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILD 833

Query: 494 ISNN-MLSGHIPHWMGNFSSELEILSMSKNHL 524
           I++N  +S  +        + + +L   K   
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 8e-13
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 20/184 (10%)

Query: 111 SLFHPLEELQSLDLSVNIFTY---DSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSY 164
            LF     + ++ LS N+ T    +S      + ++   L  + L  N      D     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-- 748

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS------PLITCLKNLT 218
             TLP L  + + +N    S           L    +                T +    
Sbjct: 749 ATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 219 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 278
            L  L I SN +   +   +     L  LD++ N    +  ++S+  + +    +L    
Sbjct: 807 SLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI-DVTSVCPYIEAGMYVLLYDK 862

Query: 279 NTLH 282
               
Sbjct: 863 TQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-09
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
            N  RVTGL L+     G +P  IGQL  +  L+   +S + S           +  +  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 789 YNKLTGQIPP----QLTALNFLSIFNVSYNNLSGRTP 821
            +++              LN   +   + N      P
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 12/121 (9%), Positives = 35/121 (28%), Gaps = 7/121 (5%)

Query: 727 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLD 786
           N +  +     +   +    +   D+     +  L+L+     G +P++   L  ++ L 
Sbjct: 294 NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS 353

Query: 787 ISYNKLTGQIP-------PQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPS 839
              +  T               +        + Y  +      +   +   + +   NP 
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

Query: 840 L 840
           +
Sbjct: 414 M 414

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (484), Expect = 3e-54
 Identities = 71/287 (24%), Positives = 119/287 (41%), Gaps = 11/287 (3%)

Query: 370 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG--NIPYSAGEMKELSLLDLS-RNYF 426
            D     + G L         ++  +D+S         IP S   +  L+ L +   N  
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS 486
            G +  ++      L  L +++ N  G        +  L  L F  N  SG +   + S 
Sbjct: 90  VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546
            +L  +    N +SG IP   G+FS     +++S+N L G +P    NL  L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 547 RLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605
            L G  +    +  + + + L KN+L   +  ++  S  L  L+LR+N   G +P  + +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF--SGSIPPC 650
              L  L +  N+L G IP Q   LQ+  +   + NK      +P C
Sbjct: 267 LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  182 bits (464), Expect = 2e-51
 Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 9/240 (3%)

Query: 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF--SEYMNLTRLRHLYFEN-NNF 475
            D     + G +     T  + +  LDLS  N    +   S   NL  L  LY    NN 
Sbjct: 31  TDCCNRTWLG-VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 476 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 535
            G I   +   T L  L I++  +SG IP ++    + L  L  S N L G +P  +++L
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSL 148

Query: 536 ERLRILDISENRLSGPIASSL-NLSS-VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593
             L  +    NR+SG I  S  + S     +++ +N L G IP        L  ++L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRN 207

Query: 594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
              G          N + + L  N L   +  ++   + L  +DL  N+  G++P     
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (420), Expect = 1e-45
 Identities = 77/327 (23%), Positives = 124/327 (37%), Gaps = 57/327 (17%)

Query: 223 LDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLS-SLANHSKLEGLLLSTRNNTL 281
            D  +    G L    +    +  LDLS  N    +P+  SLAN   L  L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--- 87

Query: 282 HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNP 341
                                NL G  P  +     L YL ++H  + G  P +L +   
Sbjct: 88  ---------------------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--- 123

Query: 342 KLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC 401
                 +K                 L  LD S N   G LP ++   L  L+ +    N 
Sbjct: 124 ------IKT----------------LVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNR 160

Query: 402 FEGNIPYSAGEMKELS-LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
             G IP S G   +L   + +SRN  +G +  +      +L  +DLS N  EG     + 
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFG 218

Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 520
           +    + ++   N+ +  +   +  S +L  LD+ NN + G +P  +      L  L++S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVS 276

Query: 521 KNHLEGNVPVQLNNLERLRILDISENR 547
            N+L G +P Q  NL+R  +   + N+
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 3e-36
 Identities = 87/411 (21%), Positives = 134/411 (32%), Gaps = 116/411 (28%)

Query: 28  CLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCH--WQRVKCNATT- 84
           C   ++ ALLQIK    +        + LSSW+         +DCC+  W  V C+  T 
Sbjct: 3   CNPQDKQALLQIKKDLGN-------PTTLSSWLPT-------TDCCNRTWLGVLCDTDTQ 48

Query: 85  -GRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRS 143
             RV  L L                            +L     I           SL +
Sbjct: 49  TYRVNNLDLSG-------------------------LNLPKPYPIP---------SSLAN 74

Query: 144 LKQLKILVL-GHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLE 202
           L  L  L + G N     I   +  L  L  L +    + G                   
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG------------------- 115

Query: 203 RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 262
                  +   L  +  L  LD S N L+G+LP  IS+L +L  +    N   G  P  S
Sbjct: 116 ------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DS 168

Query: 263 LANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLD 322
             + SKL                           + +++  L G  P       +L ++D
Sbjct: 169 YGSFSKL------------------------FTSMTISRNRLTGKIPPT-FANLNLAFVD 203

Query: 323 LSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG----ILQLPKAKHDFLHHLDISCNNFR 378
           LS N L G+       ++   + + L  NS +     +          L+ LD+  N   
Sbjct: 204 LSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGLSKN-----LNGLDLRNNRIY 257

Query: 379 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 429
           G LP  +   L+ L  +++S N   G IP   G ++   +   + N    G
Sbjct: 258 GTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (332), Expect = 7e-34
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           +DLS N L G+     G  +    ++L+ NSL+  +       K +  LD+  N++ G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 797 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 841
           P  LT L FL   NVS+NNL G  P  G    FD S+Y  N  LC
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (285), Expect = 1e-27
 Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 4/150 (2%)

Query: 508 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSL-NLSSVEHL 564
              SS L           G +        R+  LD+S   L    PI SSL NL  +  L
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 565 SLQK-NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI 623
            +   N L G IP  + +  +L  L +     SG IP  +++   L  L    N L G +
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 624 PDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
           P  +  L  L  +    N+ SG+IP  + +
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGS 171

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 98.4 bits (246), Expect = 2e-22
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 735 TGLDLS-CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
             L +   N L G IP  I +L  +  L +++ ++SG+IP+  S +K + +LD SYN L+
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 794 GQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
           G +PP +++L  L       N +SG  PD
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.4 bits (241), Expect = 7e-22
 Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           L ++   ++G IP  + Q++ ++ L+ S N+LSG++P S S+L  +  +    N+++G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 797 PPQLTALNFLSIF-NVSYNNLSGRTPD 822
           P    + + L     +S N L+G+ P 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 94.5 bits (236), Expect = 3e-21
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 727 NGSNVNRVTGLDLSCNQLTGE--IPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIE 783
             +   RV  LDLS   L     IPS +  L  +  L +   N+L G IP + + L  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
            L I++  ++G IP  L+ +  L   + SYN LSG  P
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.8 bits (234), Expect = 6e-21
 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL-ALNLSNNSLSGSIPESFSNLKMIESLDI 787
           S++  + G+    N+++G IP   G    +  ++ +S N L+G IP +F+NL +   +D+
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDL 204

Query: 788 SYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 825
           S N L G       +       +++ N+L+      G 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS--IPESFSNLKMIESLDIS-YNK 791
              D       G +     Q   +  L+LS  +L     IP S +NL  +  L I   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 792 LTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
           L G IPP +  L  L    +++ N+SG  PD
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (473), Expect = 8e-49
 Identities = 114/576 (19%), Positives = 205/576 (35%), Gaps = 53/576 (9%)

Query: 92  LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILV 151
           L  T RL   +++   +  S F  LE+LQ L+L              ++ R+L  L+IL 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILD 79

Query: 152 LGHN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIG 207
           LG +   +     F     L  L  L L++  +  +    G    LK L  ++L +N I 
Sbjct: 80  LGSSKIYFLHPDAFQG---LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

Query: 208 S-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLT--SLEYLDLSHNNFEGMFPLSSLA 264
           S  L      L  LK +D SSNQ+       +  L   +L +  L+ N+      +    
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 265 NHSKLEGLLLST---RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 321
             +    ++L       N              + + G     ++ S    L+  +H+   
Sbjct: 197 CMNPFRNMVLEILDVSGNGWT-----------VDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 322 DLSHNKLVGNFPTWLLRN--NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 379
               + +  +             +  L L +     +          L  L+++ N    
Sbjct: 246 GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN- 303

Query: 380 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 439
           K+       L  L  +++S N        +   + +++ +DL +N+ +  +         
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLE 362

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
            L+ LDL +N       +    +  +  ++   N      K  L    +  ++ +S N L
Sbjct: 363 KLQTLDLRDNA-----LTTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRL 413

Query: 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIASSL-- 556
                 +       L+IL +++N        Q  +    L  L + EN L     + L  
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 557 ----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 612
                LS ++ L L  N LN L PG       L  L+L  N  +  + H     +NL  L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEIL 531

Query: 613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
            +  N L  P PD       L+++D++ NKF     
Sbjct: 532 DISRNQLLAPNPD---VFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  171 bits (434), Expect = 5e-44
 Identities = 97/512 (18%), Positives = 168/512 (32%), Gaps = 39/512 (7%)

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL-ITCLKNLTRLKILDIS 226
           L +   L+L +N I  + T      L+ L  + L   +    +     +NL  L+ILD+ 
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNF-EGMFPLSSLANHSKLEGLLLSTRNNTLHVKT 285
           S+++    P     L  L  L L      + +       N   L  L LS +N    +  
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS-KNQIRSLYL 140

Query: 286 ENWLPT-SQLIVLGLTKCNLNGSYPDFL--LHQYHLKYLDLSHNKLVGNFPTWLLRNNPK 342
                  + L  +  +   +       L  L    L +  L+ N L         +    
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 343 LEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCF 402
              ++L+    SG         +F + +  S         H MG         D  +N F
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 403 EGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNL 462
            G    S      +  LDLS  +    L+  V      L++L+L+ N         +  L
Sbjct: 261 AGLARSS------VRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313

Query: 463 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522
             L+ L    N               +  +D+  N ++  I      F  +L+ L +  N
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN 372

Query: 523 --------------HLEGNVPVQLNNLE-RLRILDISENRLSG--PIASSLNLSSVEHLS 565
                          L GN  V L  +     ++ +SENRL     +   L +  ++ L 
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 566 LQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEH-----SNLRFLLLGGNHL 619
           L +N  +     +       L  L L +N        ++        S+L+ L L  N+L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 620 QGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651
               P     L  L  + L+ N+ +  +    
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLT-VLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (427), Expect = 4e-43
 Identities = 119/709 (16%), Positives = 233/709 (32%), Gaps = 91/709 (12%)

Query: 215 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 274
           + L   + L +S N +     S    L  L+ L+L            +  N   L  L L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY--PDFLLHQYHLKYLDLSHNKLVGNF 332
              +    +  + +     L  L L  C L+ +     +  +   L  LDLS N++   +
Sbjct: 81  G-SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 333 PTWLLRNNPKLEVLLLKNNSFSGILQ--LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
                     L+ +   +N    + +  L   +   L    ++ N+   ++  + G  + 
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 450
               M                    L +LD+S N ++  ++ +        +   L   +
Sbjct: 200 PFRNMV-------------------LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 451 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 510
                   + N+       F             L+ +S++ LD+S+  +           
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAG-----------LARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKN 569
              L++L+++ N +          L+ L++L++S N L    +S+   L  V ++ LQKN
Sbjct: 290 KD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629
            +  +         KL TL+LRDN  +      I+   ++  + L GN L   +P     
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT-LPKINLT 402

Query: 630 LQKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN-- 686
              +    LS N+     I      V   ++     L  ++        +       +  
Sbjct: 403 ANLI---HLSENRLENLDILYFLLRVPHLQI-----LILNQNRFSSCSGDQTPSENPSLE 454

Query: 687 --NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 744
                 N                       ++ A +          ++ +  L L+ N L
Sbjct: 455 QLFLGEN----------------------MLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 804
               P     L A+  L+L++N L+            +E LDIS N+L     P      
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-APNPD--VFV 547

Query: 805 FLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAE 864
            LS+ ++++N          + +TF       N ++            + P +       
Sbjct: 548 SLSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPAD---IYCVYPDSFSGVSLF 600

Query: 865 EEEEEEDDDESAIDMVTLYSSFGASYVTVILVLIAILWINSYWRRLWFY 913
               E  D+E  +  +   S F    VT+ L L+ IL +  +    +  
Sbjct: 601 SLSTEGCDEEEVLKSLKF-SLFIVCTVTLTLFLMTILTVTKFRGFCFIC 648

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 9e-27
 Identities = 68/411 (16%), Positives = 132/411 (32%), Gaps = 52/411 (12%)

Query: 439 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNN 497
           F   +      N   Q       L     L    N     +          LQ+L++ + 
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQ 58

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL- 556
                I          L IL +  + +    P     L  L  L +    LS  +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 557 --NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQIN--EHSNLRF 611
             NL ++  L L KN +  L     F     L +++   N       H++   +   L F
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 612 LLLGGNHLQGPIPDQLCQLQK------LAMMDLSRNKFSGSIPPCFANVLSW-------- 657
             L  N L   +     +         L ++D+S N ++  I   F+N +S         
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 658 -RVGSDDVLNGSKLNSPELD-------EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI 709
                        +  P+ +         +    L +    +    ++  L  L+    +
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV---L 295

Query: 710 D-ERVEIEFAMKNRYEIYNG--SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 766
           +    +I        +I +     ++ +  L+LS N L     S+   L  +  ++L  N
Sbjct: 296 NLAYNKIN-------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 767 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
            ++    ++F  L+ +++LD+  N LT      +  +  +    +S N L 
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 3e-26
 Identities = 76/378 (20%), Positives = 126/378 (33%), Gaps = 29/378 (7%)

Query: 105 FPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSY 164
                         +       +    D     +  L     ++ L L H +        
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARS-SVRHLDLSHGFVFSLNSRV 285

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
             TL  L  L L +N+I           L NL  +NL  N +G    +    L ++  +D
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK 284
           +  N +          L  L+ LDL  N    +  + S+ +        +    N L   
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD--------IFLSGNKLVTL 396

Query: 285 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344
            +  L  + + +      NL+  Y  FLL   HL+ L L+ N+            NP LE
Sbjct: 397 PKINLTANLIHLSENRLENLDILY--FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454

Query: 345 VLLLKNNSFSGILQLPKAKHDF-----LHHLDISCNNFRGKLPHNMGVILQKLMYMDISK 399
            L L  N      +       F     L  L ++ N     LP  +   L  L  + ++ 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNS 513

Query: 400 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EGQF 455
           N     + ++      L +LD+SRN     L         SL +LD+++N F    E   
Sbjct: 514 NRLT-VLSHNDL-PANLEILDISRNQ----LLAPNPDVFVSLSVLDITHNKFICECELST 567

Query: 456 FSEYMNLTRLRHLYFENN 473
           F  ++N T +       +
Sbjct: 568 FINWLNHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (266), Expect = 1e-23
 Identities = 72/328 (21%), Positives = 127/328 (38%), Gaps = 30/328 (9%)

Query: 90  LSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149
           L+  +   L+  + +   LN  +F  L++L+ L+L+ N         A ++   L  L++
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK----IADEAFYGLDNLQV 318

Query: 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
           L L +N   +   S    LP +  + L  N I     +Q    L+ L  ++L  N     
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN----- 372

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
            +T +  +  +  + +S N+L     ++     +   + LS N  E +  L  L     L
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 270 EGLLLSTRNNTLHVKTENWLPT--SQLIVLGLTKCNLNGSY-----PDFLLHQYHLKYLD 322
           + L+L+   N     + +  P+    L  L L +  L  ++      D      HL+ L 
Sbjct: 429 QILILN--QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 323 LSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLP 382
           L+HN L  + P  +  +   L  L L +N  + +          L  LDIS N      P
Sbjct: 487 LNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLEILDISRNQLLAPNP 543

Query: 383 HNMGVILQKLMYMDISKNCFEGNIPYSA 410
                +   L  +DI+ N F      S 
Sbjct: 544 D----VFVSLSVLDITHNKFICECELST 567

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (450), Expect = 3e-47
 Identities = 116/545 (21%), Positives = 186/545 (34%), Gaps = 54/545 (9%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
            ++LDLS N   +        S  S  +L++L L              +L  L TLIL  
Sbjct: 30  TKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN-GSLPSV 237
           N I+          L +L ++      + S     + +L  LK L+++ N +    LP  
Sbjct: 86  NPIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 238 ISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 297
            SNLT+LE+LDLS N  +     + L    ++  L LS                     L
Sbjct: 145 FSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS---------------------L 182

Query: 298 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL 357
            L+   +N         +  L  L L +N    N     ++    LEV  L    F    
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 358 QLPKAKHDFL--------HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
            L K     L            ++  ++      ++   L  +    +     E    +S
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 410 A-GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
                + L L++     F             SL+ L  ++N     F    ++L  L  L
Sbjct: 302 YNFGWQHLELVNCKFGQFPTL-------KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352

Query: 469 YFENN--NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 526
               N  +F G        +TSL+ LD+S N +   +          LE L    ++L+ 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQ 410

Query: 527 NVPV-QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC- 583
                   +L  L  LDIS              LSS+E L +  N+       ++F    
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 584 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643
            L  L+L         P   N  S+L+ L +  N L+        +L  L  + L  N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 644 SGSIP 648
             S P
Sbjct: 531 DCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  172 bits (437), Expect = 2e-45
 Identities = 122/506 (24%), Positives = 191/506 (37%), Gaps = 34/506 (6%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNT 167
           L    F    ELQ LDLS              + +SL  L  L+L  N          + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDIS 226
           L SL  L+     +   +    I  LK L E+N+  N I S  L     NLT L+ LD+S
Sbjct: 99  LSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 227 SNQLNGSLPSVISNLTSLEY----LDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
           SN++     + +  L  +      LDLS N         +     +L  L L    ++L+
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE-IRLHKLTLRNNFDSLN 215

Query: 283 VKTENWLPTSQLIVLGLTK------CNLNGSYPDFL--LHQYHLKYLDLSHNKLVGNFPT 334
           V        + L V  L         NL       L  L    ++   L++     +   
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 335 WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
            L      +    L + +   +     + +    HL++    F           L+ L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKR 329

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG-GLSQSVVTGCFSLELLDLSNNNFEG 453
           +  + N  +G   +S  ++  L  LDLSRN  S  G       G  SL+ LDLS N    
Sbjct: 330 LTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 454 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSS 512
              S ++ L +L HL F+++N     +  +  S  +L  LDIS+              SS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 513 ELEILSMSKNHLEGNVPVQ-LNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA 570
            LE+L M+ N  + N        L  L  LD+S+ +L     ++  +LSS++ L++  N 
Sbjct: 447 -LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFS 596
           L  +  G   R   L  + L  N + 
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (391), Expect = 1e-39
 Identities = 102/609 (16%), Positives = 186/609 (30%), Gaps = 114/609 (18%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
              K LD+S N L         +   L+ LDLS    +      +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-- 84

Query: 278 NNTLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 336
            N +           S L  L   + NL       + H   LK L+++HN +        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 337 LRNNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
             N   LE L L +N    I    L++          LD+S N                 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------------- 191

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 452
               I    F+            L  L L  N+ S  + ++ + G   LE+  L    F 
Sbjct: 192 ----IQPGAFKEI---------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
            +      NL +      E            L + +++   ++           + N  +
Sbjct: 239 NE-----GNLEKFDKSALEG-----------LCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 513 ELEILSMSKNHLEGNVPVQ-LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571
            +   S+    +E           + L +++    +       +L L S++ L+   N  
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-----TLKLKSLKRLTFTSNKG 337

Query: 572 NGLIPGELFRSCKLVTLNLRDN--TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629
                     S  L  L+L  N  +F G         ++L++L L  N +   +      
Sbjct: 338 GNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394

Query: 630 LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS 689
           L++L  +D   +             L                       + +  + +  +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLR---------------------NLIYLDISHTHT 433

Query: 690 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP 749
                G++  LS+LE                                L ++ N       
Sbjct: 434 RVAFNGIFNGLSSLEV-------------------------------LKMAGNSFQENFL 462

Query: 750 SDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 808
            DI  +L+ +  L+LS   L    P +F++L  ++ L+++ N+L          L  L  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 809 FNVSYNNLS 817
             +  N   
Sbjct: 523 IWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  118 bits (297), Expect = 9e-28
 Identities = 71/401 (17%), Positives = 138/401 (34%), Gaps = 26/401 (6%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
           S + LDLS N         + +   L+ L                S + L  L ++ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL-N 557
                      SS L+ L   + +L       + +L+ L+ L+++ N + S  +     N
Sbjct: 89  QSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKL----VTLNLRDNTFSGRIPHQINEHSNLRFLL 613
           L+++EHL L  N +  +   +L    ++    ++L+L  N  +  I     +   L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 614 LGGNHLQGPIPDQLCQ-LQKLAMMDLSRNKFSG-----SIPPCFANVLSWRVGSDDVLNG 667
           L  N     +     Q L  L +  L   +F                L      +     
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE--FRL 264

Query: 668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 727
           + L+    D    F  L N  S + +      +              +      ++  + 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV----NCKFGQFP 320

Query: 728 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS--GSIPESFSNLKMIESL 785
              +  +  L  + N+      S++  L ++  L+LS N LS  G   +S      ++ L
Sbjct: 321 TLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 786 DISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQF 826
           D+S+N +   +      L  L   +  ++NL  +  +   F
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 417

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (291), Expect = 5e-27
 Identities = 79/434 (18%), Positives = 145/434 (33%), Gaps = 35/434 (8%)

Query: 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 478
           LDLS N     L          L++LDLS    +      Y +L+ L  L    N     
Sbjct: 33  LDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL-EGNVPVQLNNLER 537
                   +SLQ L      L+      +G+  + L+ L+++ N +    +P   +NL  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 538 LRILDISENRLSGPIASSLNL-----SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592
           L  LD+S N++     + L +          L L  N +N  I    F+  +L  L LR+
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRN 209

Query: 593 NTFSGRIPHQI-------NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK--- 642
           N  S  +             H  +        +L+      L  L  L + +        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 643 FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 702
           +   I   F  + +    S   +   ++     +   +   L N +         + L  
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 703 LEKRAAIDERVEIEFAMKN------------RYEIYNGSNVN--RVTGLDLSCNQLTGEI 748
           L   +        E  + +                 + S+     +  LDLS N +   +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 749 PSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKLTGQIPPQLTALNFLS 807
            S+   L+ +  L+  +++L      S F +L+ +  LDIS+             L+ L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 808 IFNVSYNNLSGRTP 821
           +  ++ N+      
Sbjct: 449 VLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.4 bits (248), Expect = 1e-21
 Identities = 49/255 (19%), Positives = 84/255 (32%), Gaps = 41/255 (16%)

Query: 107 LLNMSL----FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN--YFDDS 160
           L+N          L+ L+ L  + N            S   L  L+ L L  N   F   
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGC 364

Query: 161 IFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTR 219
                    SL  L L +N +     +     L+ L  ++ + + +      +   +L  
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279
           L  LDIS      +   + + L+SLE L ++ N+F+  F          L  L LS    
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS---- 478

Query: 280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 339
                                +C L    P        L+ L+++ N+L  + P  +   
Sbjct: 479 ---------------------QCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDR 516

Query: 340 NPKLEVLLLKNNSFS 354
              L+ + L  N + 
Sbjct: 517 LTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 46/237 (19%), Positives = 81/237 (34%), Gaps = 61/237 (25%)

Query: 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 645
           +T    +  F  +IP  +    + + L L  N L+           +L ++DLSR +   
Sbjct: 10  ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 705
                + ++               L             L  N   +   G +  LS+L+K
Sbjct: 67  IEDGAYQSLSHLST----------LI------------LTGNPIQSLALGAFSGLSSLQK 104

Query: 706 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN 765
                                          L      L       IG L+ +  LN+++
Sbjct: 105 -------------------------------LVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 766 NSL-SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF----NVSYNNLS 817
           N + S  +PE FSNL  +E LD+S NK+       L  L+ + +     ++S N ++
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 738 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 797
                    +IP ++    +   L+LS N L      SF +   ++ LD+S  ++     
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 798 PQLTALNFLSIFNVSYNNLSGRTPD 822
               +L+ LS   ++ N +      
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALG 94

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (418), Expect = 3e-43
 Identities = 101/500 (20%), Positives = 186/500 (37%), Gaps = 41/500 (8%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
           ++SLDLS N  TY         LR+   L++L+L  +  +        +L SL  L L  
Sbjct: 28  MKSLDLSFNKITYIGH----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSLP-S 236
           N +  S ++     L +L  +NL  N   +  + +   NLT L+ L I + +    +   
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 237 VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST-RNNTLHVKTENWLPTSQLI 295
             + LTSL  L++   +    +   SL +   +  L L    +  L     + L + + +
Sbjct: 143 DFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 296 VLGLTKCNLNGSYPDF---------LLHQYHLKYLDLSHNKLVGNFPTWL------LRNN 340
            L  T        P            L        D S N+L+      L        + 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
               +     +    + +L K +   +  L I    +       +  +L+K+  + +  +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 401 CFEGNIPYSAGE-MKELSLLDLSRNYFS--GGLSQSVVTGCFSLELLDLSNNNFE--GQF 455
                +P S  + +K L  LDLS N        + +      SL+ L LS N+     + 
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 456 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 515
               + L  L  L    N F   + D       ++ L++S+  +   +        + LE
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQT-LE 434

Query: 516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 575
           +L +S N+L+ +  +    L RL+ L IS N+L   +  +     +  + + +N L  + 
Sbjct: 435 VLDVSNNNLD-SFSL---FLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQLKSVP 489

Query: 576 PGELFRSCKLVTLNLRDNTF 595
            G   R   L  + L  N +
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (402), Expect = 4e-41
 Identities = 91/496 (18%), Positives = 174/496 (35%), Gaps = 35/496 (7%)

Query: 147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI 206
           +K L L  N         L    +L  LIL  +RI   + +     L +L  ++L  N +
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHL 86

Query: 207 GSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 265
            S   +    L+ LK L++  N      + S+  NLT+L+ L + +            A 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 266 HSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH 325
            + L  L +    +  + ++++      +  L L           F      ++YL+L  
Sbjct: 147 LTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 326 NKLVGNFPTWLLRNNPKLEVLLLKNN-------SFSGILQLPKAKHD--FLHHLDISCNN 376
             L     + L  +     +  L          SF+ +L+L +   +   +   D + N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 377 FR-------GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 429
                      +     V    +  + I +     ++      ++++  + +  +     
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324

Query: 430 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYM---NLTRLRHLYFENNNFS--GKIKDGLL 484
           +  S      SLE LDLS N    ++            L+ L    N+     K  + LL
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 485 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
           +  +L  LDIS N                +  L++S   +     V+    + L +LD+S
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEK--MRFLNLSSTGIRV---VKTCIPQTLEVLDVS 439

Query: 545 ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 604
            N L    + SL L  ++ L + +N L  L    LF    L+ + +  N          +
Sbjct: 440 NNNLD---SFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFD 494

Query: 605 EHSNLRFLLLGGNHLQ 620
             ++L+ + L  N   
Sbjct: 495 RLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  155 bits (394), Expect = 4e-40
 Identities = 84/489 (17%), Positives = 172/489 (35%), Gaps = 26/489 (5%)

Query: 166 NTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDI 225
               ++ +L L +N+I     +  +    NL  + L+ + I +       +L  L+ LD+
Sbjct: 23  GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 226 SSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKT 285
           S N L+    S    L+SL+YL+L  N ++ +   S   N + L+ L +        ++ 
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 286 ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEV 345
            ++   + L  L +   +L       L     + +L L  ++               +  
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRY 200

Query: 346 LLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 405
           L L++ + +     P    +    +             +   +L+               
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK-------LLRYILEL 253

Query: 406 IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 465
                 +     L D + +     +S+       ++  L +          + Y  L ++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESD-VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 466 RHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKN 522
           + +  EN+     +         SL+ LD+S N++                L+ L +S+N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 523 HLE--GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 580
           HL         L  L+ L  LDIS N       S      +  L+L    +  ++   + 
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP 430

Query: 581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 640
           ++  L  L++ +N         +     L+ L +  N L+  +PD       L +M +SR
Sbjct: 431 QT--LEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLKT-LPDAS-LFPVLLVMKISR 482

Query: 641 NKFSGSIPP 649
           N+   S+P 
Sbjct: 483 NQLK-SVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (327), Expect = 1e-31
 Identities = 98/573 (17%), Positives = 185/573 (32%), Gaps = 94/573 (16%)

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279
             + D  S     S+PS ++   +++ LDLS N          L   + L+ L+L     
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK---- 58

Query: 280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 339
                                   +N    D       L++LDLS N L  +  +     
Sbjct: 59  ---------------------SSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGP 96

Query: 340 NPKLEVLLLKNNSFSGILQLPKAKH-DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDIS 398
              L+ L L  N +  +       +   L  L I       ++       L  L  ++I 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 399 KNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-------- 450
                     S   ++++  L L  +  +  L +       S+  L+L + N        
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 451 FEGQFFSEYMNLTRLRHLYFENNNFSG--KIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 508
                 S  M     R     + +F+   K+   +L  + ++  D + N L    P    
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 509 NFS-------SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSS 560
             S         +  L + + +L  ++    + LE+++ + +  +++   P + S +L S
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 561 VEHLSLQKNALNGLIPGE--LFRSC-KLVTLNLRDNTFS--GRIPHQINEHSNLRFLLLG 615
           +E L L +N +            +   L TL L  N      +    +    NL  L + 
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 675
            N    P+PD     +K+  ++LS       +  C    L     S++ L+   L  P L
Sbjct: 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRL 453

Query: 676 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 735
            +E+    +  N+           L  L                       + S    + 
Sbjct: 454 -QEL---YISRNK-----------LKTLP----------------------DASLFPVLL 476

Query: 736 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL 768
            + +S NQL         +L ++  + L  N  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (317), Expect = 3e-30
 Identities = 88/502 (17%), Positives = 166/502 (33%), Gaps = 67/502 (13%)

Query: 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
               V   ++ SF+    +P      +  LD+S N     + H        L  + +  +
Sbjct: 5   DASGVCDGRSRSFT---SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 401 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF-EGQFFSEY 459
                   +   +  L  LDLS N+ S  LS S      SL+ L+L  N +      S +
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 460 MNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILS 518
            NLT L+ L   N     +I+    +  TSL  L+I    L  +    + +    +  L+
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLT 178

Query: 519 MSKNHLEGNVPVQLNNLERLRILDISENRLSG---------PIASSLNLSSVEHLSLQKN 569
           +  +     + +  + L  +R L++ +  L+           ++S +   +     L   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 570 ALNGL--IPGELFRSCKLVTLNLRDNTFSGRIPHQIN--------EHSNLRFLLLGGNHL 619
           + N L  +   +    ++   +   N      P + +        E   +R L +   +L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 620 QGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI 679
              +      L+K+  + +  +K          ++ S        L+ + +    L    
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD---LSENLMVEEYLKNSA 355

Query: 680 EFGSLGNNR----SSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 735
             G+  + +    S N +  M +    L                           +  +T
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEIL-------------------------LTLKNLT 390

Query: 736 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795
            LD+S N     +P      + +  LNLS+  +          L   E LD+S N L   
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVSNNNLD-S 445

Query: 796 IPPQLTALNFLSIFNVSYNNLS 817
               L  L  L    +S N L 
Sbjct: 446 FSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (273), Expect = 7e-25
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 20/361 (5%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           + +++ LD+S N ++ +I H      + L++L +  + +         +L  L  LD+S+
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 546 NRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQI 603
           N LS    +    LSS+++L+L  N    L    LF +   L TL + +      I    
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 604 NEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV--LSWRVG 660
               ++L  L +    L+      L  ++ +  + L  ++ +  +      +  + +   
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 720
            D  L   + +   +DE          R S      +  L  L +       VE +    
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 721 NRYEIYNGSNVNRVTG-----------LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 769
           N    +N S  + V+            L +    L  ++ +    L+ +  + + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 770 GSIPESFSNLKMIESLDISYNKLTGQIPPQ---LTALNFLSIFNVSYNNLSGRTPDKGQF 826
                   +LK +E LD+S N +  +         A   L    +S N+L          
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 827 A 827
            
Sbjct: 384 L 384

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (261), Expect = 3e-23
 Identities = 60/392 (15%), Positives = 117/392 (29%), Gaps = 59/392 (15%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
              + ++  L L ++   +  ++        L  ++ L L         FS L       
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIF----ADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
            +     R     T++   EL  L    LE + +         + T   + D + ++ + 
Sbjct: 224 PMKKLAFRG-SVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDV 276

Query: 233 SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTS 292
                     ++  L +           +  +   K++                      
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVK---------------------- 313

Query: 293 QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL--VGNFPTWLLRNNPKLEVLLLKN 350
               + +    +      F  H   L++LDLS N +       +      P L+ L+L  
Sbjct: 314 ---RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 351 NSFSGILQLPKAKHDF-----LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 405
           N       + K          L  LDIS N F   +P +     +K+ ++++S       
Sbjct: 371 NHLR---SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-V 424

Query: 406 IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 465
           +       + L +LD+S N        S       L+ L +S N    +   +      L
Sbjct: 425 VK--TCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKL--KTLPDASLFPVL 475

Query: 466 RHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
             +    N             TSLQ + +  N
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 49/249 (19%), Positives = 79/249 (31%), Gaps = 61/249 (24%)

Query: 105 FPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSY 164
             L+  S    L+ L+ LDLS N+                           Y  +S    
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMV-----------------------EEYLKNSAC-- 356

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
               PSL TL+L  N +      + + +   +                    L  L  LD
Sbjct: 357 KGAWPSLQTLVLSQNHL------RSMQKTGEIL-----------------LTLKNLTSLD 393

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK 284
           IS N  +  +P        + +L+LS      +           LE L +S  NN L   
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---QTLEVLDVS--NNNL--- 443

Query: 285 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344
               L   +L  L +++  L       L     L  + +S N+L  + P  +      L+
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQL-KSVPDGIFDRLTSLQ 500

Query: 345 VLLLKNNSF 353
            + L  N +
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 47/208 (22%), Positives = 71/208 (34%), Gaps = 22/208 (10%)

Query: 106 PLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYL 165
            L N +       LQ+L LS N      K    + L +LK L  L +  N F   +    
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTG--EILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 166 NTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDI 225
                +  L L    I         C  + L  +++  N + S        L RL+ L I
Sbjct: 407 QWPEKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNNNLDS----FSLFLPRLQELYI 458

Query: 226 SSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH--- 282
           S N+L  +LP   S    L  + +S N  +   P       + L+ + L    N      
Sbjct: 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH--TNPWDCSC 513

Query: 283 ---VKTENWLPTSQLIVLGLTKCNLNGS 307
                   WL  +     G  KC+ +G 
Sbjct: 514 PRIDYLSRWLNKNSQKEQGSAKCSGSGK 541

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (381), Expect = 7e-39
 Identities = 109/525 (20%), Positives = 186/525 (35%), Gaps = 66/525 (12%)

Query: 124 LSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEG 183
           L     T D+ +    +  +L +    VLG     D++      L  + TL      I  
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI-- 58

Query: 184 SQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTS 243
            ++  G+  L NL ++N   N +    IT LKNLT+L  + +++NQ+    P  ++NLT+
Sbjct: 59  -KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 244 LEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCN 303
           L  L L +N    + PL +L N                            L  L L+   
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTN----------------------------LNRLELSSNT 145

Query: 304 LNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAK 363
           ++      L     L+ L    N++    P   L N   LE L + +N  S I  L K  
Sbjct: 146 ISD--ISALSGLTSLQQLSFG-NQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLT 199

Query: 364 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR 423
           +  L  L  + N      P  +   L  L  + ++ N  + +I  +   +  L+ LDL+ 
Sbjct: 200 N--LESLIATNNQISDITPLGI---LTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLAN 252

Query: 424 NYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL 483
           N  S   + + ++G   L  L L  N       S    LT L +L    N         +
Sbjct: 253 NQIS---NLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS--PI 305

Query: 484 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDI 543
            +  +L  L +  N +S   P  + + +  L+ L    N +       L NL  +  L  
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKVSD--VSSLANLTNINWLSA 360

Query: 544 SENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 603
             N++S     + NL+ +  L L   A                T+           P  I
Sbjct: 361 GHNQISDLTPLA-NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATI 417

Query: 604 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
           ++  +     +  N       +      +   +      FSG++ 
Sbjct: 418 SDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 2e-35
 Identities = 96/476 (20%), Positives = 164/476 (34%), Gaps = 70/476 (14%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           I     L       +    +  ++    ++L  +  L       + +  +  L N     
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN----- 69

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
                                  L  +  +   L    P   L +  L  + +++N++  
Sbjct: 70  -----------------------LTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIAD 104

Query: 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
             P   L N   L  L L NN  + I  L    +  L+ L++S N         +   L 
Sbjct: 105 ITP---LANLTNLTGLTLFNNQITDIDPLKNLTN--LNRLELSSNTISD--ISALSG-LT 156

Query: 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 450
            L  +    N      P     +  L  LD+S N  S     SV+    +LE L  +NN 
Sbjct: 157 SLQQLSFG-NQVTDLKPL--ANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQ 210

Query: 451 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 510
                 +    LT L  L    N         L S T+L  LD++NN +S   P  +   
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 570
           +  L  L +  N +    P  L  L  L  L+++EN+L      S NL ++ +L+L  N 
Sbjct: 265 TK-LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS-NLKNLTYLTLYFNN 320

Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
           ++ + P  +    KL  L   +N  S      +   +N+ +L  G N +    P  L  L
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 631 QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 686
            ++  + L+   ++ +     ANV         + N  K  +  L         G+
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVS--------IPNTVKNVTGALIAPATISDGGS 422

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (333), Expect = 1e-32
 Identities = 100/485 (20%), Positives = 168/485 (34%), Gaps = 90/485 (18%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
           L  L  ++ S N      ++     L++L +L  +++ +N   D   + L  L +L  L 
Sbjct: 67  LNNLTQINFSNN------QLTDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  N+I        +  L NL  + L  N I    I+ L  LT L+ L   +   +    
Sbjct: 119 LFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---L 170

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             ++NLT+LE LD+S N    +  L+ L N                              
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTN------------------------------ 200

Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
                                 L+ L  ++N++    P   L     L+ L L  N    
Sbjct: 201 ----------------------LESLIATNNQISDITP---LGILTNLDELSLNGNQLKD 235

Query: 356 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 415
           I  L    +  L  LD++ N      P +    L KL  + +  N      P     +  
Sbjct: 236 IGTLASLTN--LTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNISP--LAGLTA 288

Query: 416 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 475
           L+ L+L+ N        S ++   +L  L L  NN      S   +LT+L+ L+F NN  
Sbjct: 289 LTNLELNENQLE---DISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV 343

Query: 476 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 535
           S      L + T++  L   +N +S   P  + N +  +  L ++             N+
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR-ITQLGLNDQAWTNAPVNYKANV 398

Query: 536 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 595
                +      L  P   S +  S     +  N  +       +   + VT+     TF
Sbjct: 399 SIPNTVKNVTGALIAPATIS-DGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTF 456

Query: 596 SGRIP 600
           SG + 
Sbjct: 457 SGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 59/307 (19%), Positives = 115/307 (37%), Gaps = 51/307 (16%)

Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571
           +E     + K ++   V     +L+++  L      +         L+++  ++   N L
Sbjct: 24  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQL 80

Query: 572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 631
             + P  L    KLV + + +N  +   P  +   +NL  L L  N +    P  L  L 
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 632 KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN 691
            L  ++LS N  S                  D+   S L S      ++  S GN  +  
Sbjct: 135 NLNRLELSSNTIS------------------DISALSGLTS------LQQLSFGNQVTDL 170

Query: 692 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 751
                   L+ LE          ++ +     +I   + +  +  L  + NQ++   P  
Sbjct: 171 KPLAN---LTTLE---------RLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216

Query: 752 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 811
           +G L  +  L+L+ N L      + ++L  +  LD++ N+++   P  L+ L  L+   +
Sbjct: 217 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 812 SYNNLSG 818
             N +S 
Sbjct: 273 GANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 794
           T L L  NQ++   P  +  L A+  L L+ N L    P   SNLK +  L + +N ++ 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 795 QIPPQLTALNFLSIFNVSYNNLSG 818
             P  +++L  L       N +S 
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           SN+  +T L L  N ++   P  +  L  +  L   NN +S     S +NL  I  L   
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 840
           +N+++   P  L  L  ++   ++    +    +     +   +      +L
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 6/93 (6%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           +++  +T LDL+ NQ++   P  +  L  +  L L  N +S   P   + L  + +L+++
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
            N+L    P  ++ L  L+   + +NN+S  +P
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 783
           +I+  + +       L    +T  +      L  +  L      +     +    L  + 
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLT 71

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
            ++ S N+LT   P  L  L  L    ++ N ++  TP
Sbjct: 72  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           +N+  +  L    NQ++   P  +  L  I  L L++ + + +     +N+ +  ++   
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
              L    P  ++     +  ++++N  S
Sbjct: 408 TGALI--APATISDGGSYTEPDITWNLPS 434

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 2e-34
 Identities = 85/407 (20%), Positives = 148/407 (36%), Gaps = 62/407 (15%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
             +L          + +        L +    VL      D +      L S+  L++  
Sbjct: 2   AATLATL------PAPINQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI 238
            ++   Q   GI  L NL  +NL  N I    I+ L NL +L  L I +N++  +  S +
Sbjct: 54  EKVASIQ---GIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISAL 106

Query: 239 SNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLG 298
            NLT+L  L L+ +N   + PL++L     +  L L                        
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTK---MYSLNLGA---------------------- 141

Query: 299 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ 358
               N N S    L +   L YL ++ +K+    P   + N   L  L L  N    I  
Sbjct: 142 ----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP 194

Query: 359 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL 418
           L       LH+     N      P      + +L  + I  N      P     + +L+ 
Sbjct: 195 LASLTS--LHYFTAYVNQITDITPVAN---MTRLNSLKIGNNKITDLSPL--ANLSQLTW 247

Query: 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 478
           L++  N  S     + V     L++L++ +N       S   NL++L  L+  NN    +
Sbjct: 248 LEIGTNQIS---DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 525
             + +   T+L  L +S N ++   P  + + S  ++    +   ++
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 1e-30
 Identities = 77/434 (17%), Positives = 140/434 (32%), Gaps = 102/434 (23%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           I    +L       +    +   +      L S+  L ++      +  +  L N     
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQGIEYLTN----- 67

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
                                                          L+YL+L+ N++  
Sbjct: 68  -----------------------------------------------LEYLNLNGNQITD 80

Query: 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
             P   L N  KL  L +  N  + I  L    +  L  L ++ +N     P      L 
Sbjct: 81  ISP---LSNLVKLTNLYIGTNKITDISALQNLTN--LRELYLNEDNISDISPLAN---LT 132

Query: 391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 450
           K+  +++  N    ++      M  L+ L ++ +        + +     L  L L+ N 
Sbjct: 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQ 188

Query: 451 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 510
            E    S   +LT L +     N  +      + + T L  L I NN ++   P  + N 
Sbjct: 189 IED--ISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANL 242

Query: 511 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 570
           S  L  L +  N +       + +L +L++L++  N++S       ++S + +LS     
Sbjct: 243 SQ-LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-------DISVLNNLS----- 287

Query: 571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
                        +L +L L +N         I   +NL  L L  NH+    P  L  L
Sbjct: 288 -------------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332

Query: 631 QKLAMMDLSRNKFS 644
            K+   D +     
Sbjct: 333 SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (302), Expect = 1e-29
 Identities = 84/394 (21%), Positives = 147/394 (37%), Gaps = 81/394 (20%)

Query: 107 LLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLN 166
           + ++     LE +  L ++        KVA+   +  L  L+ L L  N   D   S L+
Sbjct: 34  VTDVVTQEELESITKLVVAGE------KVASIQGIEYLTNLEYLNLNGNQITD--ISPLS 85

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
            L  L  L +  N+I        +  L NL E+ L  + I    I+ L NLT++  L++ 
Sbjct: 86  NLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLG 140

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE 286
           +N    S  S +SN+T L YL ++ +  + + P+++L +   L  L L+   N +     
Sbjct: 141 ANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD---LYSLSLN--YNQI----- 189

Query: 287 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
                  +  L     +L             L Y     N++    P   + N  +L  L
Sbjct: 190 -----EDISPLA----SLT-----------SLHYFTAYVNQITDITP---VANMTRLNSL 226

Query: 347 LLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNI 406
            + NN  + +  L       L  L+I  N                    DI+        
Sbjct: 227 KIGNNKITDLSPLANLSQ--LTWLEIGTNQIS-----------------DIN-------- 259

Query: 407 PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR 466
             +  ++ +L +L++  N  S     SV+     L  L L+NN    +       LT L 
Sbjct: 260 --AVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 467 HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 500
            L+   N+ +      L S + +   D +N ++ 
Sbjct: 315 TLFLSQNHITDIR--PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (282), Expect = 6e-27
 Identities = 65/332 (19%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
                 L    +              +  L++     + I  +    +  L +L+++ N 
Sbjct: 23  EGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQGIEYLTN--LEYLNLNGNQ 77

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436
                P +    L KL  + I  N    +I  +   +  L  L L+ +  S     S + 
Sbjct: 78  ITDISPLSN---LVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDI---SPLA 129

Query: 437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 496
               +  L+L  N+      S   N+T L +L    +         + + T L  L ++ 
Sbjct: 130 NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNY 186

Query: 497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 556
           N +    P  + + +S L   +   N +    P  + N+ RL  L I  N+++     + 
Sbjct: 187 NQIEDISP--LASLTS-LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA- 240

Query: 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
           NLS +  L +  N ++ +    +    KL  LN+  N  S      +N  S L  L L  
Sbjct: 241 NLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
           N L     + +  L  L  + LS+N  +   P
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 2e-25
 Identities = 61/336 (18%), Positives = 125/336 (37%), Gaps = 28/336 (8%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
              L      +   FP     +  +    +L+  S + ++   + +   +  L ++    
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKV 56

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
              +       L  L Y++++ N      P S   + +L+ L +  N  +     S +  
Sbjct: 57  A-SIQGIEY--LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT---DISALQN 108

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
             +L  L L+ +N      S   NLT++  L    N+    +   L + T L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557
            +    P  + N +  L  LS++ N +E   P  L +L  L       N+++     + N
Sbjct: 166 KVKDVTP--IANLTD-LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVA-N 219

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
           ++ +  L +  N +  L P  L    +L  L +  N  S    + + + + L+ L +G N
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
            +       L  L +L  + L+ N+           
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 53/286 (18%), Positives = 101/286 (35%), Gaps = 35/286 (12%)

Query: 538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 597
              L      ++  I    +L+      LQK ++  ++  E      +  L +     + 
Sbjct: 2   AATLATLPAPINQ-IFPDADLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVAS 58

Query: 598 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 657
                I   +NL +L L GN +    P  L  L KL  + +  NK +        N+ + 
Sbjct: 59  IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN- 111

Query: 658 RVGSDDVLNGSKLNSPELDEEIEFGSLGN----NRSSNTMFGMWRWLSALEKRAAIDERV 713
                  L    LN   + +     +L      N  +N        LS +         +
Sbjct: 112 -------LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTG-------L 157

Query: 714 EIEFAMKNR-YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 772
                 +++  ++   +N+  +  L L+ NQ+    P  +  L ++       N ++   
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 773 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818
           P   +N+  + SL I  NK+T   P  L  L+ L+   +  N +S 
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
            ++ ++  L++  NQ++    S +  L  + +L L+NN L     E    L  + +L +S
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
            N +T   P  L +L+ +   + +   + 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           +N++++T L++  NQ++    + +  L  +  LN+ +N +S       +NL  + SL ++
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818
            N+L  +    +  L  L+   +S N+++ 
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  137 bits (347), Expect = 2e-34
 Identities = 107/492 (21%), Positives = 186/492 (37%), Gaps = 47/492 (9%)

Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTL 174
           +   L++S N  +          + SL +L+IL++ HN   Y D S+F +      L  L
Sbjct: 22  KTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLDISVFKFN---QELEYL 74

Query: 175 ILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGS 233
            L  N++             NL  ++L  N   + P+     N+++LK L +S+  L  S
Sbjct: 75  DLSHNKL----VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 234 LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQ 293
               I++L   + L +    +        L + +     ++   N   H   +  + T  
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 294 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 353
            + L   KC L  +   + L              ++    T    +N  L  +    NSF
Sbjct: 191 NLELSNIKCVLEDNKCSYFL-------------SILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 354 SGILQLPKAKHDFLHHLDISCNNFRGKLPHNM----GVILQKLMYMDISKNCFEGNIPYS 409
             ILQL    H  + +  IS    +G+L        G  L+ L    +  + F     Y 
Sbjct: 238 IRILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRL 465
                 +++ + + +      ++ V   C S       LD SNN      F    +LT L
Sbjct: 296 YEIFSNMNIKNFTVSG-----TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 466 RHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523
             L  + N      KI +      SLQ LDIS N +S        +++  L  L+MS N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 524 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 583
           L   +   L    R+++LD+  N++       + L +++ L++  N L  +  G   R  
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468

Query: 584 KLVTLNLRDNTF 595
            L  + L  N +
Sbjct: 469 SLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (284), Expect = 2e-26
 Identities = 89/465 (19%), Positives = 165/465 (35%), Gaps = 54/465 (11%)

Query: 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 259
           N+ +N+I     + + +L++L+IL IS N++     SV      LEYLDLSHN       
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-IS 85

Query: 260 LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTS--QLIVLGLTKCNLNGSYPDFLLHQYH 317
                N   L+ L LS   N            +  QL  LGL+  +L  S    + H   
Sbjct: 86  CHPTVN---LKHLDLS--FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 318 LKYLDLSHNKLVGNFPTWLLRN--NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 375
            K L +             L++     L ++   N  F  IL +       L   +I C 
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 376 NFRGKLPHNMGVILQK--------------------------------LMYMDISKNCFE 403
               K  + + ++ +                                 + Y  IS    +
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 404 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF----SLELLDLSNNNFEGQFFSEY 459
           G + +   +    SL  LS +     +     +  +    ++ + + + +          
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEIL 517
             ++   HL F NN  +  + +     T L+ L +  N L   +       +    L+ L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQL 379

Query: 518 SMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 576
            +S+N +  +      +  + L  L++S N L+  I   L    ++ L L  N +  + P
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSI-P 437

Query: 577 GELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQ 620
            ++ +   L  LN+  N     +P  I +  ++L+ + L  N   
Sbjct: 438 KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 2e-24
 Identities = 78/454 (17%), Positives = 159/454 (35%), Gaps = 31/454 (6%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
            +  IL+IS N ++    S I +L+ L  L +SHN  +    +S    + +LE L LS  
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS-- 77

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 336
           +N L   + +      L  L L+    +         +   LK+L LS   L        
Sbjct: 78  HNKLVKISCHPT--VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EKSSVLP 134

Query: 337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI--SCNNFRGKLPHNMGVILQKLMY 394
           + +    +VLL+   ++         +      L I    N     +       +  L  
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRN--YFSGGLSQSVVTGCF------SLELLDL 446
            +I     +    Y    + +L       N    +   + +            ++    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 447 SNNNFEGQFFSEYM-----NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 501
           SN   +GQ           +L  L      ++ F           +++ + + + +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSL--NL 558
            +     +  S    L  S N L   V     +L  L  L +  N+L      + +   +
Sbjct: 315 -VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 559 SSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
            S++ L + +N+++             L++LN+  N  +  I   +     ++ L L  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651
            ++  IP Q+ +L+ L  ++++ N+   S+P   
Sbjct: 432 KIKS-IPKQVVKLEALQELNVASNQLK-SVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 81/514 (15%), Positives = 159/514 (30%), Gaps = 97/514 (18%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLD 371
               L++S N +     T  + +  KL +L++ +N    +         +     L +LD
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-----LEYLD 75

Query: 372 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 431
           +S N             L K+                S      L  LDLS N F     
Sbjct: 76  LSHNK------------LVKI----------------SCHPTVNLKHLDLSFNAFDALPI 107

Query: 432 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491
                    L+ L LS  + E        +L   + L      +  K     L   + + 
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 492 LDI--SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-----------L 538
           L I    N     I        + LE+ ++     +      L+ L +           L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-----KLVTLNLRDN 593
             ++ + N     +   +  ++V + S+    L G +    F         L    +  +
Sbjct: 228 NNIETTWNSFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 594 TFSGRIPHQINEHSNLRFLLLGGNHLQG---PIPDQLCQLQKLAMMDLSRNKFSGSIPPC 650
            F     +     SN+       +  +      P ++     L   D S N  + ++   
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL---DFSNNLLTDTVFEN 343

Query: 651 FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL---------GNNRSSNTMFGMWRWLS 701
             ++          L  ++L       E+    +          N+ S +   G   W  
Sbjct: 344 CGHLTELETLI---LQMNQLKELSKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 702 ALEK----RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA 757
           +L         + + +      +             +  LDL  N++   IP  + +L+A
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPR-------------IKVLDLHSNKIK-SIPKQVVKLEA 445

Query: 758 ILALNLSNNSLSGSIPE-SFSNLKMIESLDISYN 790
           +  LN+++N L  S+P+  F  L  ++ + +  N
Sbjct: 446 LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 8e-16
 Identities = 72/427 (16%), Positives = 147/427 (34%), Gaps = 46/427 (10%)

Query: 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 478
           L++S+NY S  L  S +     L +L +S+N  +    S +     L +L   +N     
Sbjct: 26  LNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNLE 536
                    +L+ LD+S N     +P     F +  +L+ L +S  HLE +  + + +L 
Sbjct: 85  SCHPT---VNLKHLDLSFNAFD-ALPI-CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 537 RLRILDISENRLSGPIA----SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592
             ++L +                 N  S+  +       + ++   +     L   N++ 
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 593 NTFSGRIPHQINEHSNL------RFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRNKF 643
                +  + ++  + L        L L           ++ QL     +    +S  K 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 644 SGSIPPCFAN-------VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 696
            G +     +        LS      DV    +    E+   +   +   + +       
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNG--SNVNRVTGLDLSCNQLTGEIPSDIG- 753
              +S             ++F+     +       ++  +  L L  NQL  E+      
Sbjct: 320 PSKISPFL---------HLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEM 369

Query: 754 --QLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 810
             Q++++  L++S NS+S        S  K + SL++S N LT  I   L     + + +
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLD 427

Query: 811 VSYNNLS 817
           +  N + 
Sbjct: 428 LHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 50/308 (16%), Positives = 109/308 (35%), Gaps = 19/308 (6%)

Query: 80  CNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLE------ELQSLDLSVNIFTYDS 133
            + +   V  L L N   +         L++              L +++ + N F    
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241

Query: 134 KVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICEL 193
           ++  + ++     +  + L              +L +L    +  +     Q+       
Sbjct: 242 QLVWHTTVWYF-SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY-IYEIF 299

Query: 194 KNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN 253
            N+   N   +      + C   ++    LD S+N L  ++     +LT LE L L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 254 FEGMFPLSSL-ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL 312
            + +  ++ +      L+ L +S  + +   K  +   T  L+ L ++   L  +    L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 313 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH---H 369
             +  +K LDL  NK+  + P  +++    L+ L + +N    +  +P    D L     
Sbjct: 420 PPR--IKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQ---LKSVPDGIFDRLTSLQK 472

Query: 370 LDISCNNF 377
           + +  N +
Sbjct: 473 IWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 59/358 (16%), Positives = 123/358 (34%), Gaps = 24/358 (6%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDI 543
           S    +L+IS N +S  +     +    S+L IL +S N ++          + L  LD+
Sbjct: 20  SQKTTILNISQNYIS-ELWT--SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 544 SENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
           S N+L     S     +++HL L  NA + L   + F +  +L  L L            
Sbjct: 77  SHNKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 603 I-NEHSNLRFLLLGGNHLQGPIPDQLCQL--QKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
           I + + +   L+LG  + +   P+ L     + L ++  +  +F   +      V +  +
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 660 G-----------SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 708
                       S  +   +KL +      +   ++    +S        W + +   + 
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL 768
            +  V+++  +  R   Y+G+++  ++   +  +               +   N + +  
Sbjct: 255 SN--VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 769 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQF 826
                   S +     LD S N LT  +      L  L    +  N L   +      
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPS 170
            +   ++ LQ LD+S N  +YD K       +SL  L    +  N   D+IF  L   P 
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN---MSSNILTDTIFRCL--PPR 422

Query: 171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQL 230
           +  L LH N+I      + + +L+ L E+N+  N + S        LT L+ + + +N  
Sbjct: 423 IKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

Query: 231 N 231
           +
Sbjct: 481 D 481

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (326), Expect = 6e-32
 Identities = 103/578 (17%), Positives = 181/578 (31%), Gaps = 133/578 (23%)

Query: 216 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           + T L+     S+ L   +P    N+ S      + + +E   P  +          L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 335
             +   H              L L    L+ S P+      HL+ L  S N L    P  
Sbjct: 68  CLDRQAH-------------ELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPEL 109

Query: 336 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 395
                  L+ LL+ NN+   +  LP      L +L +S N    KLP             
Sbjct: 110 P----QSLKSLLVDNNNLKALSDLPPL----LEYLGVSNNQLE-KLP------------- 147

Query: 396 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 455
                               L ++D+  N         +     SLE +   NN  E   
Sbjct: 148 -------------ELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLE--E 187

Query: 456 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 515
             E  NL  L  +Y +NN+   K+ D      SL+ +   NN+L   +P  + N    L 
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE-ELPE-LQNLPF-LT 240

Query: 516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 575
            +    N L+  +P    +LE    L++ +N L+       +L+ ++      + L+ L 
Sbjct: 241 TIYADNNLLK-TLPDLPPSLEA---LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 296

Query: 576 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAM 635
           P        L  LN   N     I    +   +L  L +  N L   +P    +L++L  
Sbjct: 297 P-------NLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL-- 342

Query: 636 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG 695
              S N  +  +P    N+          L+       E  +     S+ + R ++ +  
Sbjct: 343 -IASFNHLA-EVPELPQNLKQ--------LHVEYNPLREFPDIP--ESVEDLRMNSHLAE 390

Query: 696 MWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQL 755
           +      L++                               L +  N L  E P     +
Sbjct: 391 VPELPQNLKQ-------------------------------LHVETNPLR-EFPDIPESV 418

Query: 756 QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
           +    L +++  +      +      +E     ++   
Sbjct: 419 E---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (263), Expect = 7e-24
 Identities = 93/453 (20%), Positives = 156/453 (34%), Gaps = 95/453 (20%)

Query: 366 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY 425
           FL       +N   ++P      ++       + + +E N P   GE +E+++  L    
Sbjct: 12  FLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 485
                             L+L+N         E      L  L    N+ + ++ +   S
Sbjct: 70  ------------DRQAHELELNNLGL--SSLPE--LPPHLESLVASCNSLT-ELPELPQS 112

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
             SL V + +   LS   P         LE L +S N LE  +P +L N   L+I+D+  
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162

Query: 546 NRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605
           N L           S+E ++   N L  L   EL     L  +   +N+   ++P     
Sbjct: 163 NSLKKLPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLK-KLPDLP-- 214

Query: 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 665
             +L  ++ G N L+     +L  L  L  +    N    ++P    ++ +        +
Sbjct: 215 -LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN------V 264

Query: 666 NGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724
             + L   PEL + + F  +  N  S         LS L                     
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENIFSG--------LSEL--------------------- 295

Query: 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 784
                    +  L+ S N++   +      L+    LN+SNN L   +P     L   E 
Sbjct: 296 ------PPNLYYLNASSNEIR-SLCDLPPSLEE---LNVSNNKLI-ELPALPPRL---ER 341

Query: 785 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           L  S+N L  ++P     L  L   +V YN L 
Sbjct: 342 LIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (260), Expect = 1e-23
 Identities = 85/434 (19%), Positives = 145/434 (33%), Gaps = 70/434 (16%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
              L+SL  S N  T        +  +SLK L +         D         P L  L 
Sbjct: 90  PPHLESLVASCNSLT-----ELPELPQSLKSLLVDNNNLKALSDLP-------PLLEYLG 137

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           +  N++E       +     L  ++++ N     L         L+ +   +NQL   LP
Sbjct: 138 VSNNQLE---KLPELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE-ELP 189

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             + NL  L  +   +N+ + +  L        LE ++    NN L    E       L 
Sbjct: 190 E-LQNLPFLTAIYADNNSLKKLPDLP-----LSLESIVAG--NNILEELPELQNLPF-LT 240

Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG 355
            +      L  + PD       L+ L++  N L     T L      L  L +  N FSG
Sbjct: 241 TIYADNNLLK-TLPDLPP---SLEALNVRDNYL-----TDLPELPQSLTFLDVSENIFSG 291

Query: 356 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 415
           + +LP      L++L+ S N  R  L          L  +++S N     +P        
Sbjct: 292 LSELPPN----LYYLNASSNEIR-SLCDL----PPSLEELNVSNNKLI-ELP---ALPPR 338

Query: 416 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 475
           L  L  S N+ +      V     +L+ L +  N    +F     ++  LR      N+ 
Sbjct: 339 LERLIASFNHLA-----EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSH 387

Query: 476 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 535
             ++ +      +L+ L +  N L    P    +    +E L M+   +           
Sbjct: 388 LAEVPELP---QNLKQLHVETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETT 439

Query: 536 ERLRILDISENRLS 549
           ++L       +   
Sbjct: 440 DKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 3e-18
 Identities = 65/367 (17%), Positives = 119/367 (32%), Gaps = 65/367 (17%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSL-RSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
                 L+ +D+  N             L      L+ +  G+N         L  LP L
Sbjct: 149 LQNSSFLKIIDVDNNSLK---------KLPDLPPSLEFIAAGNNQL--EELPELQNLPFL 197

Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
             +    N ++            +L  +    N +    +  L+NL  L  +   +N L 
Sbjct: 198 TAIYADNNSLKKL-----PDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLK 250

Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 291
            +LP +  +L +L   D    +   +           L  L +S   N       + L  
Sbjct: 251 -TLPDLPPSLEALNVRDNYLTDLPELP--------QSLTFLDVS--ENIF-----SGLSE 294

Query: 292 --SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
               L  L  +   +  S  D       L+ L++S+NKL+   P       P+LE L+  
Sbjct: 295 LPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALP----PRLERLIAS 345

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
            N  + + +LP+     L  L +  N  R + P      ++ L       N     +P  
Sbjct: 346 FNHLAEVPELPQN----LKQLHVEYNPLR-EFPDIPE-SVEDL-----RMNSHLAEVP-- 392

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469
               + L  L +  N               S+E L +++      +   +    +L    
Sbjct: 393 -ELPQNLKQLHVETNPLR-----EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDV 446

Query: 470 FENNNFS 476
           FE+++  
Sbjct: 447 FEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 5e-10
 Identities = 48/285 (16%), Positives = 86/285 (30%), Gaps = 64/285 (22%)

Query: 533 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 592
            +   L+      + L+     + N+ S        +      P       ++    LRD
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA 652
                              L L    L   +P+    L+ L     S N  +  +P    
Sbjct: 68  C-----------LDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQ 111

Query: 653 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER 712
           ++ S  V +    N   L   +L   +E+  + NN+           L  L         
Sbjct: 112 SLKSLLVDN---NNLKAL--SDLPPLLEYLGVSNNQ-----------LEKLP-------- 147

Query: 713 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 772
                      E+ N S +     +D+  N L  ++P     L+    +   NN L   +
Sbjct: 148 -----------ELQNSSFL---KIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-EL 188

Query: 773 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           PE   NL  + ++    N L  ++P    +L  +       N L 
Sbjct: 189 PE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 6e-08
 Identities = 37/234 (15%), Positives = 73/234 (31%), Gaps = 65/234 (27%)

Query: 599 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
           I  +   ++ L+  L   ++L   +P +   ++       + +++  + PP         
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE-- 59

Query: 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 718
           +    + +     + EL+       L N             LS+L               
Sbjct: 60  MAVSRLRDCLDRQAHELE-------LNNLG-----------LSSLP-------------- 87

Query: 719 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE---- 774
                          +  L  SCN LT E+P     L+++L  N +  +LS   P     
Sbjct: 88  ----------ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136

Query: 775 -----------SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
                         N   ++ +D+  N L  ++P    +L F+       N L 
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 18/98 (18%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILA-------------LNLSNNSLSGSIPESFSNLKMIE 783
              + ++     P   G+ + +               L L+N  LS S+PE   +L   E
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---E 94

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
           SL  S N LT ++P    +L  L + N +   LS   P
Sbjct: 95  SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           L +  N L  E P     ++     +L  NS    +PE   NLK    L +  N L  + 
Sbjct: 362 LHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQNLK---QLHVETNPLR-EF 411

Query: 797 PPQLTALNFLSIFNVSYNNLS 817
           P    ++  L    ++   + 
Sbjct: 412 PDIPESVEDL---RMNSERVV 429

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 1e-30
 Identities = 69/359 (19%), Positives = 132/359 (36%), Gaps = 27/359 (7%)

Query: 191 CELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLS 250
           C   ++   +++              L   KI+   ++ +     +++ +   +E L+L+
Sbjct: 21  CVFYDV---HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 251 HNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPD 310
               E      + A    ++ L +   N   ++    +     L VL L + +L+     
Sbjct: 78  DLQIE-EIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 311 FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 370
              +   L  L +S+N L         +    L+ L L +N    +  +  +    L H 
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR---LTHVDLSLIPSLFHA 191

Query: 371 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGL 430
           ++S N     L      I   +  +D S N     +        EL++L L  N  +   
Sbjct: 192 NVSYNLLS-TLA-----IPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNLT--- 239

Query: 431 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ 490
             + +     L  +DLS N  E   +  ++ + RL  LY  NN     +        +L+
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549
           VLD+S+N L  H+      F   LE L +  N +     ++L+    L+ L +S N   
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (290), Expect = 9e-28
 Identities = 73/391 (18%), Positives = 139/391 (35%), Gaps = 27/391 (6%)

Query: 214 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
           L+       + I     +         L + + +   ++      P + L +  ++E L 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 333
           L+       + T  +     +  L +    +    P    +   L  L L  N L  + P
Sbjct: 76  LN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 334 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 393
             +  N PKL  L + NN+   I          L +L +S N     +  ++   +  L 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLF 189

Query: 394 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFE 452
           + ++S N        +      +  LD S N  +      V       L +L L +NN  
Sbjct: 190 HANVSYNLLS-----TLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNNLT 239

Query: 453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
               +  +N   L  +    N     +    +    L+ L ISNN L   +  +     +
Sbjct: 240 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 572
            L++L +S NHL  +V       +RL  L +  N +   +  S    ++++L+L  N  +
Sbjct: 297 -LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS-THHTLKNLTLSHNDWD 352

Query: 573 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 603
                 LFR+  +    + D     +I +Q+
Sbjct: 353 CNSLRALFRN--VARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 3e-26
 Identities = 64/334 (19%), Positives = 117/334 (35%), Gaps = 45/334 (13%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
           + K +   ++ +    P  LL +  ++E+L L +     I     A    +  L +  N 
Sbjct: 46  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLSQSVV 435
            R  LP ++   +  L  + + +N    ++P        +L+ L +S N     +     
Sbjct: 105 IR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161

Query: 436 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 495
               SL+ L LS+N       S    +  L H     N  S      L    +++ LD S
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLST-----LAIPIAVEELDAS 213

Query: 496 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 555
           +N ++  +    G  + EL IL +  N+L  +    L N   L  +D+S N L       
Sbjct: 214 HNSIN-VVR---GPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE------ 261

Query: 556 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615
                     +  +    +         +L  L + +N     +         L+ L L 
Sbjct: 262 ---------KIMYHPFVKMQ--------RLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
            NHL   +     Q  +L  + L  N    ++  
Sbjct: 304 HNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 9e-24
 Identities = 67/414 (16%), Positives = 133/414 (32%), Gaps = 70/414 (16%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 498
               + +     +  F  E + L   + + F+N+    K+   LL S   +++L++++  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 499 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLN 557
           +   I  +   ++  ++ L M  N +    P    N+  L +L +  N LS  P     N
Sbjct: 81  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
              +  LS+  N L   I  + F++   L  L L  N  +  +   +    +L    +  
Sbjct: 140 TPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSY 195

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 676
           N L       L     +  +D S N  +    P               L   KL    L 
Sbjct: 196 NLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE-----------LTILKLQHNNLT 239

Query: 677 EEIEFGS--------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG 728
           +     +        L  N     M+  +  +  LE+                       
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER----------------------- 276

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
                   L +S N+L   +      +  +  L+LS+N L   +  +      +E+L + 
Sbjct: 277 --------LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCA 842
           +N +   +       + L    +S+N+       +  F      +       C 
Sbjct: 327 HNSIV-TLKLS--THHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCK 376

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 3e-23
 Identities = 74/342 (21%), Positives = 120/342 (35%), Gaps = 36/342 (10%)

Query: 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSL 171
            L   + +    +             L S +Q+++L L        D   F+Y     ++
Sbjct: 43  TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTI 95

Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
             L + +N I     +     +  L  + LERN + S       N  +L  L +S+N L 
Sbjct: 96  QKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 291
                     TSL+ L LS N       LS + +   L    +S   N L          
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVS--YNLLSTLAIP---- 204

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 351
             +  L  +  ++N       +    L  L L HN L  +     L N P L  + L  N
Sbjct: 205 IAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYN 258

Query: 352 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 411
               I+  P  K   L  L IS N     L    G  +  L  +D+S N    ++  +  
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLL-HVERNQP 315

Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFE 452
           +   L  L L  N        ++      +L+ L LS+N+++
Sbjct: 316 QFDRLENLYLDHNSIV-----TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 6e-20
 Identities = 53/292 (18%), Positives = 105/292 (35%), Gaps = 26/292 (8%)

Query: 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 425
            + + I              + L     +    +     +P +     +++ LL+L+   
Sbjct: 23  FYDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 482
               +         +++ L +  N         F    N+  L  L  E N+ S  +  G
Sbjct: 81  IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ---NVPLLTVLVLERNDLS-SLPRG 135

Query: 483 LLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 541
           +  +   L  L +SNN L   I       ++ L+ L +S N L     V L+ +  L   
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 191

Query: 542 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 601
           ++S N LS    +     +VE L    N++N  + G +     L  L L+ N  +     
Sbjct: 192 NVSYNLLS----TLAIPIAVEELDASHNSINV-VRGPVNVE--LTILKLQHNNLTD--TA 242

Query: 602 QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
            +  +  L  + L  N L+  +     ++Q+L  + +S N+   ++      
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 65/297 (21%), Positives = 110/297 (37%), Gaps = 32/297 (10%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSY 164
           L   +F  +  L  L L  N  +   +        +  +L  L + +N     +D  F  
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQ- 162

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
                SL  L L  NR+     +     + +LF  N+  N      ++ L     ++ LD
Sbjct: 163 --ATTSLQNLQLSSNRLTHVDLSL----IPSLFHANVSYNL-----LSTLAIPIAVEELD 211

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK 284
            S N +N  +         L  L L HNN       + L N+  L  + LS  N    + 
Sbjct: 212 ASHNSIN-VVRG--PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLS-YNELEKIM 264

Query: 285 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344
              ++   +L  L ++   L  +   +      LK LDLSHN L+ +          +LE
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLE 321

Query: 345 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC 401
            L L +NS      L  + H  L +L +S N++       +   + +    D  ++C
Sbjct: 322 NLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 51/343 (14%), Positives = 125/343 (36%), Gaps = 28/343 (8%)

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 538
           I   L        + I       +        ++  +I++   + +       L++  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 539 RILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 597
            +L++++ ++      +     +++ L +  NA+  L P        L  L L  N  S 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 598 RIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVL 655
            +P  I  +   L  L +  N+L+    D       L  + LS N+ +  +      ++ 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLF 189

Query: 656 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
                    ++ + L++  +   +E     +N            ++ +     ++    +
Sbjct: 190 HAN------VSYNLLSTLAIPIAVEELDASHNS-----------INVVRGPVNVELT-IL 231

Query: 716 EFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE 774
           +    N  +     N   +  +DLS N+L  +I      ++Q +  L +SNN L  ++  
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 775 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
               +  ++ LD+S+N L   +       + L    + +N++ 
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 34/149 (22%)

Query: 107 LLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLN 166
           L + +       L  +DLS N          Y     +++L+ L + +N    ++  Y  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRL-VALNLYGQ 292

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
            +P+L  L L  N +                  ++ERN              RL+ L + 
Sbjct: 293 PIPTLKVLDLSHNHLL-----------------HVERNQ---------PQFDRLENLYLD 326

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFE 255
            N +  +L   +S   +L+ L LSHN+++
Sbjct: 327 HNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 34/285 (11%)

Query: 541 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 600
           +   +       ++         + +     +     E         +  +++T      
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRV 659
             ++    +  L L    ++            +  + +  N     +PP  F NV    V
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121

Query: 660 GSDDVLNGSKLNSPELDEEIEFG-------SLGNNRSSNTMFGMWRWLSALEKRAAIDER 712
                L  + L+S  L   I          S+ NN         ++  ++L       + 
Sbjct: 122 LV---LERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL-------QN 169

Query: 713 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 772
           +++     NR    + S +  +   ++S N L+      +    A+  L+ S+NS++   
Sbjct: 170 LQLSS---NRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVR 221

Query: 773 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
                 L     L + +N LT      L     L   ++SYN L 
Sbjct: 222 GPVNVELT---ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 2e-30
 Identities = 69/463 (14%), Positives = 141/463 (30%), Gaps = 27/463 (5%)

Query: 90  LSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149
            +                   SL      ++ LDLS N  +      +   L    +L++
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS----QISAADLAPFTKLEL 62

Query: 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
           L L  N         L +L +L TL L+ N +      Q +    ++  ++   N I   
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRV 114

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
             +  +       + +++N++           + ++YLDL  N  + +      A+   L
Sbjct: 115 SCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
           E L L    N ++   +  +  ++L  L L+   L             + ++ L +NKLV
Sbjct: 172 EHLNLQ--YNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
                  LR +  LE   L+ N F     L            ++    +  L        
Sbjct: 228 -LIEK-ALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQTVKK-LTGQNEEEC 283

Query: 390 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF---SLELLDL 446
                      C E      A  +  L   + +     G  ++ +            +D 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 506
               +        +       L  +      ++ +G  +   L             + H 
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHA 402

Query: 507 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549
               S    + ++ K + E  V  Q      +R  D+ +++ +
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (311), Expect = 6e-30
 Identities = 75/424 (17%), Positives = 135/424 (31%), Gaps = 51/424 (12%)

Query: 216 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           N  R KI  ++ + L  +L S+  +  +++ LDLS N    +   + LA  +KLE L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLS 66

Query: 276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 335
             +N L+                           D       L+ LDL++N +       
Sbjct: 67  --SNVLY------------------------ETLDL-ESLSTLRTLDLNNNYVQE----- 94

Query: 336 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 395
            L   P +E L   NN+ S +     ++     ++ ++ N     L         ++ Y+
Sbjct: 95  -LLVGPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYL 149

Query: 396 DISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF--SLELLDLSNNNFE 452
           D+  N  +  N    A     L  L+L  N+        V        L+ LDLS+N   
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-----DVKGQVVFAKLKTLDLSSNKLA 204

Query: 453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMGNFS 511
                E+ +   +  +   NN     I+  L  S +L+  D+  N    G +  +     
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571
               +   +   L G    +                L  P A  L     +  +L     
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 572 NGL--IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 629
           +    +  E     +   ++     +   I            L      L   + +    
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 630 LQKL 633
             +L
Sbjct: 383 HAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (306), Expect = 3e-29
 Identities = 74/458 (16%), Positives = 144/458 (31%), Gaps = 49/458 (10%)

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
             +     ++ +  +  +         +  LDLS N  S  +S + +     LELL+LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSS 67

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 508
           N        +  +L+ LR L   NN         LL   S++ L  +NN +S  +     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSL 566
                 + + ++ N +     +      R++ LD+  N +        + +  ++EHL+L
Sbjct: 118 RGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 626
           Q N +   + G++  + KL TL+L  N  +  +  +    + + ++ L  N L   I   
Sbjct: 177 QYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 627 LCQLQKLAMMDLSRNKFS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG 685
           L   Q L   DL  N F  G++   F+     +  +   +      + E       G  G
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 686 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 745
                +        L AL                                 L    ++  
Sbjct: 293 AYCCEDLPAPFADRLIAL--------------------------KRKEHALLSGQGSETE 326

Query: 746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP---PQLTA 802
             +  +         ++         I +     +   +L+     L  Q+         
Sbjct: 327 -RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 803 LNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSL 840
           L+      V    L   T ++           R     
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (305), Expect = 4e-29
 Identities = 68/452 (15%), Positives = 142/452 (31%), Gaps = 57/452 (12%)

Query: 139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFE 198
           +  ++  + KI  +  +    ++ S   +  ++  L L  N +                 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD---------- 53

Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
                          L   T+L++L++SSN L  +L   + +L++L  LDL++N      
Sbjct: 54  ---------------LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY----- 91

Query: 259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 318
            +  L     +E L  +  NN +   + +         + L    +          +  +
Sbjct: 92  -VQELLVGPSIETLHAA--NNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 319 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI---LQLPKAKHDFLHHLDISCN 375
           +YLDL  N++       L  ++  LE L L+ N    +   +   K     L  LD+S N
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK-----LKTLDLSSN 201

Query: 376 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 435
                +          + ++ +  N     I  +    + L   DL  N F  G  +   
Sbjct: 202 KLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 436 TGCFSLELLDL-SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL--LSSTSLQVL 492
           +    ++ +   +     GQ   E    T   +  +   +      D L  L      +L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 493 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI 552
               +     +     N +     +   K      +       +    L+  +  L   +
Sbjct: 319 SGQGSETER-LECERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 553 ASSLNLSSVEHLSLQKNALNGLIPGELFRSCK 584
           ++        H  L       +   EL  + +
Sbjct: 377 SNGRRA----HAELDGTLQQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (303), Expect = 7e-29
 Identities = 60/494 (12%), Positives = 130/494 (26%), Gaps = 54/494 (10%)

Query: 233 SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTS 292
           ++  +  N    +   ++ ++ +     S   +   ++ L LS   N             
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLS--GN------------- 44

Query: 293 QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS 352
                      L+      L     L+ L+LS N L        L +   L  L L NN 
Sbjct: 45  ----------PLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91

Query: 353 FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 412
              +L  P      +  L  + NN   ++  + G   + +    ++ N          G 
Sbjct: 92  VQELLVGPS-----IETLHAANNNIS-RVSCSRGQGKKNI---YLANNKITMLRDLDEGC 142

Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 472
              +  LDL  N         +     +LE L+L  N          +   +L+ L   +
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSS 200

Query: 473 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE-GNVPVQ 531
           N  +  +     S+  +  + + NN L   I   +    + LE   +  N    G +   
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN-LEHFDLRGNGFHCGTLRDF 257

Query: 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
            +  +R++ +     +      +    +              L      R   L      
Sbjct: 258 FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 592 DNTFSGRIPHQINE----HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647
             +  G    ++       +  R +       +  I     + Q    ++  +      +
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 648 PPCFANVLS-----WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 702
                          +      L  +      L                        +  
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRD 436

Query: 703 LEKRAAIDERVEIE 716
            +     + ++  E
Sbjct: 437 WDMYQHKETQLAEE 450

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 40/273 (14%), Positives = 88/273 (32%), Gaps = 38/273 (13%)

Query: 555 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 614
             N +  +   +  ++L   +      +  +  L+L  N  S      +   + L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA-NVLSWRVGSDDVLNGSKLN-- 671
             N L   +   L  L  L  +DL+ N     +    +   L            + ++  
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLH--------AANNNISRV 114

Query: 672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALE-------KRAAIDERVEIEFAMKNRYE 724
           S    +  +   L NN+ +          S ++       +   ++              
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165

Query: 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 784
               ++ + +  L+L  N +  ++   +     +  L+LS+N L+  +   F +   +  
Sbjct: 166 ----ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 785 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           + +  NKL   I   L     L  F++  N   
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 807
           I              ++++SL  ++     +   ++ LD+S N L+      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 808 IFNVSYNNLSG 818
           + N+S N L  
Sbjct: 62  LLNLSSNVLYE 72

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (317), Expect = 2e-30
 Identities = 103/502 (20%), Positives = 183/502 (36%), Gaps = 71/502 (14%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTLI 175
            ++L LS N  +          +  L +L++L L HN     D  +F +      L  L 
Sbjct: 54  TKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFN---QDLEYLD 106

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           +  NR            L+N+                    +  L+ LD+S N  +  LP
Sbjct: 107 VSHNR------------LQNIS----------------CCPMASLRHLDLSFNDFD-VLP 137

Query: 236 --SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQ 293
                 NLT L +L LS   F     L  +A+   L  +LL   +  +       L    
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPN 195

Query: 294 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF------PTWLLRNNPKLEVLL 347
             VL L     +       +    L +L LS+ KL              L   P L  + 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 348 LKNNSFS--GILQLPK-AKHDFLHHLDISCNNFRGKLPHNMGVI----LQKLMYMDISKN 400
           L++   +    ++L +      + +L+I       ++           L+ LM   +   
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 401 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF----SLELLDLSNNNFEGQFF 456
            F  +         E+++  LS +      +  +   C     S   L+ + N F    F
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISD-----TPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 457 SEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSEL 514
                L RL+ L  + N      K+     + +SL+ LD+S N L+ H       ++  +
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574
            +L++S N L G+V   L    ++++LD+  NR+        +L +++ L++  N L   
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS- 487

Query: 575 IPGELFRSCK-LVTLNLRDNTF 595
           +P  +F     L  + L DN +
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 2e-21
 Identities = 77/453 (16%), Positives = 139/453 (30%), Gaps = 60/453 (13%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
            R K L +S N ++      IS L+ L  L LSHN             +  LE L +S  
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS-- 108

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
           +N L       +    +                       L++LDLS N           
Sbjct: 109 HNRLQN-----ISCCPM---------------------ASLRHLDLSFNDFDVLPVCKEF 142

Query: 338 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN-----MGVILQKL 392
            N  KL  L L         QL       LH   I  +     +               L
Sbjct: 143 GNLTKLTFLGLSAAK---FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF------SLELLDL 446
             +    + F   +  S   +  L L ++  N  +     + ++         ++ L  +
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST-----SLQVLDISNNMLSG 501
                      ++     + +L   N   + +I     + +     SL +  + N +   
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL- 318

Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSS 560
                + +  +E+ I  +S +       V   +      L+ ++N  +         L  
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF----SGRIPHQINEHSNLRFLLLGG 616
           ++ L LQ+N L          +  + +L   D +     S           ++  L L  
Sbjct: 379 LQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 617 NHLQGPIPDQL-CQLQKLAMMDLSRNKFSGSIP 648
           N L G +   L  +++ L   DL  N+   SIP
Sbjct: 438 NMLTGSVFRCLPPKVKVL---DLHNNRIM-SIP 466

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.2 bits (234), Expect = 4e-20
 Identities = 78/486 (16%), Positives = 167/486 (34%), Gaps = 59/486 (12%)

Query: 91  SLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKIL 150
            L     L   ++    L+  +F   ++L+ LD+S N            S   +  L+ L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-------NISCCPMASLRHL 126

Query: 151 VLGHNYFDD-SIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK-NLFEMNLERNFIGS 208
            L  N FD   +      L  L  L L   +         +  L  +   ++L    I  
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 209 PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 268
                L+      +L +  +  +     V  ++ +L +L LS+           L     
Sbjct: 186 GETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN-DENCQRLMTFLS 243

Query: 269 LEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL 328
                 +  N TL      W  + +L                       ++YL++ +  +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQ---------------FFWPRPVEYLNIYNLTI 288

Query: 329 VGNFPTWLLRN-NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS--CNNFRGKLPHNM 385
                          L+ L++++      L   +A +     ++I     +    +    
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 386 GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLD 445
                   +++ ++N F  ++      +K L  L L RN               +   + 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK------------NFFKV- 395

Query: 446 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS-STSLQVLDISNNMLSGHIP 504
                          N++ L  L    N+ +    D   + + S+ VL++S+NML+G + 
Sbjct: 396 ----------ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 505 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEH 563
                   ++++L +  N +  ++P  + +L+ L+ L+++ N+L S P      L+S+++
Sbjct: 446 RC---LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501

Query: 564 LSLQKN 569
           + L  N
Sbjct: 502 IWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 96/500 (19%), Positives = 182/500 (36%), Gaps = 71/500 (14%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF---LHHLDIS 373
             K L LS N +        +    +L VL L +N       L      F   L +LD+S
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVS 108

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA--GEMKELSLLDLSRNYFSGGLS 431
            N  +  +       +  L ++D+S N F+  +P     G + +L+ L LS   F     
Sbjct: 109 HNRLQ-NISCCP---MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 432 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNL-TRLRHLYFENNN-FSGKIKDGLLSSTSL 489
             V     S  LLDL + + +G          T + HL F  N+ FS ++   + +   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 490 QVLDISNNMLS-GHIPHWMGNFSSELEILSMSKNHLEGNVP--------VQLNNLERLRI 540
           Q+ +I  N  +   +  ++   +    +L+++  H+E                 +E L I
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 541 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF--SGR 598
            +++          + + ++++ L ++       +  +         +N++  +   +  
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 599 IP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 657
           I        S+  FL    N     +      L++L  + L RN    +         + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNM 402

Query: 658 RVGSDDVLNGSKLNSPELD------EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE 711
                  ++ + LNS   D      E I   +L +N  + ++F   R L           
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCL----------- 448

Query: 712 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 771
                                +V  LDL  N++   IP D+  LQA+  LN+++N L  S
Sbjct: 449 -------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-S 487

Query: 772 IPE-SFSNLKMIESLDISYN 790
           +P+  F  L  ++ + +  N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.1 bits (174), Expect = 7e-13
 Identities = 56/359 (15%), Positives = 111/359 (30%), Gaps = 24/359 (6%)

Query: 463 TRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 521
            R + L    N+ S +++   +S  + L+VL +S+N +   +   +  F+ +LE L +S 
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109

Query: 522 NHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL-NLSSVEHLSLQKNALNGLIPGEL 579
           N L+ N+      +  LR LD+S N     P+     NL+ +  L L       L    +
Sbjct: 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 580 FR-SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL 638
                  + L+L           +  +  N   L L  +            +  L  + L
Sbjct: 167 AHLHLSCILLDLVSYHIK-GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 639 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR 698
           S  K +          LS       +LN +  +     +                   + 
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS------------VKLFQFF 273

Query: 699 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAI 758
           W   +E     +  + I   +      Y+ + +  +    +          +       +
Sbjct: 274 WPRPVEYLNIYN--LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 759 LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
               LS +           +      L+ + N  T  +    + L  L    +  N L 
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.1 bits (174), Expect = 8e-13
 Identities = 82/455 (18%), Positives = 160/455 (35%), Gaps = 56/455 (12%)

Query: 370 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSG 428
           L +S N+   +L       L +L  + +S N    ++ +      ++L  LD+S N    
Sbjct: 57  LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 429 GLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 484
            +S   +    SL  LDLS N+F      + F    NLT+L  L      F    +  LL
Sbjct: 115 -ISCCPMA---SLRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFR---QLDLL 164

Query: 485 SSTSLQVLDISNNMLSGHIPH-----WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 539
               L +  I  +++S HI            ++ L ++    +     V + +N L  L+
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 540 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPG--------ELFRSCKLVTLNLR 591
           + +I  N  +     +         +L    L  +           + F    +  LN+ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 592 DNTFSGRIPHQINEHSN-----LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 646
           + T + RI  +   +S      L    +                 ++ +  LS +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 647 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR 706
              C  +  S+   +      +         +  F      +   T+      L    K 
Sbjct: 345 HMVCPPSPSSFTFLN---FTQNVF------TDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 707 AAIDERVEIEFAMKNRYEIYNGSNVNRVTG-------LDLSCNQLTGEIPSDI-GQLQAI 758
           A + + +     +       N    +R          L+LS N LTG +   +  +++  
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV- 454

Query: 759 LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
             L+L NN +  SIP+  ++L+ ++ L+++ N+L 
Sbjct: 455 --LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 9e-12
 Identities = 48/313 (15%), Positives = 91/313 (29%), Gaps = 38/313 (12%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
           N         +   L          LQ ++ +        +      +  L  +  L + 
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL-NIYNLTIT 289

Query: 154 HNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITC 213
                +        L SL    +       S+          +    L  +      + C
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY-SVFAEMNIKMLSISDTPFIHMVC 348

Query: 214 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
             + +    L+ + N    S+    S L  L+ L L  N       L +    +    + 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG------LKNFFKVA---LMT 399

Query: 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 333
            +  +      + N L               + +Y         +  L+LS N L G+  
Sbjct: 400 KNMSSLETLDVSLNSLN--------------SHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 334 TWLLRNNPKLEVLLLKNNSFS----GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 389
             L    PK++VL L NN        +  L       L  L+++ N  +  +P  +   L
Sbjct: 446 RCL---PPKVKVLDLHNNRIMSIPKDVTHLQA-----LQELNVASNQLK-SVPDGVFDRL 496

Query: 390 QKLMYMDISKNCF 402
             L Y+ +  N +
Sbjct: 497 TSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 10/191 (5%)

Query: 88  MQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQL 147
           +                 P ++M           L+ + N+FT DS         +LK+L
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCS---TLKRL 379

Query: 148 KILVLGHNYFD--DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF 205
           + L+L  N       +      + SL TL +  N +     ++     +++  +NL  N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 206 IGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 265
           +   +  CL    ++K+LD+ +N++  S+P  +++L +L+ L+++ N  +   P      
Sbjct: 440 LTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495

Query: 266 HSKLEGLLLST 276
            + L+ + L  
Sbjct: 496 LTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKL 792
              L LS N ++     DI  L  +  L LS+N +  S+    F   + +E LD+S+N+L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 793 TGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQF 826
              I    + +L  L   ++S+N+     P   +F
Sbjct: 113 QN-ISCCPMASLRHL---DLSFNDFD-VLPVCKEF 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 2e-28
 Identities = 64/404 (15%), Positives = 114/404 (28%), Gaps = 96/404 (23%)

Query: 216 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           N  R KI  ++ + L  +L S+  +  +++ LDLS N                       
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ------------------- 48

Query: 276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 335
                        +  + L                       L+ L+LS N L       
Sbjct: 49  -------------ISAADLAPFT------------------KLELLNLSSNVLYETLD-- 75

Query: 336 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 395
            L +   L  L L NN    +L  P      +  L  + NN   ++  + G   + +   
Sbjct: 76  -LESLSTLRTLDLNNNYVQELLVGPS-----IETLHAANNNIS-RVSCSRGQGKKNI--- 125

Query: 396 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 455
            ++ N          G    +  LDL  N         +     +LE L+L  N      
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-- 183

Query: 456 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 515
               +   +L+ L   +N  +  +     S+  +  + + NN L                
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV--------------- 227

Query: 516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 575
                       +   L   + L   D+  N             +    ++ K  +  L 
Sbjct: 228 -----------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL- 275

Query: 576 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 619
            G+    C + TL          +P         R + LG +H 
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLP----APFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 56/263 (21%), Positives = 104/263 (39%), Gaps = 18/263 (6%)

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
             +     ++ +  +  +         +  LDLS N  S  +S + +     LELL+LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSS 67

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 508
           N        +  +L+ LR L   NN         LL   S++ L  +NN +S  +     
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CS 117

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSLNLSSVEHLSL 566
                 + + ++ N +     +      R++ LD+  N +        + +  ++EHL+L
Sbjct: 118 RGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 626
           Q N +   + G++  + KL TL+L  N  +  +  +    + + ++ L  N L   I   
Sbjct: 177 QYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKA 232

Query: 627 LCQLQKLAMMDLSRNKFSGSIPP 649
           L   Q L   DL  N F      
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLR 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 2e-23
 Identities = 54/333 (16%), Positives = 109/333 (32%), Gaps = 48/333 (14%)

Query: 139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFE 198
           +  ++  + KI  +  +    ++ S   +  ++  L L  N +                 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD---------- 53

Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
                          L   T+L++L++SSN L       + +L++L  LDL++N      
Sbjct: 54  ---------------LAPFTKLELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNY----- 91

Query: 259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 318
            +  L     +E L  +  NN +   + +         + L    +          +  +
Sbjct: 92  -VQELLVGPSIETLHAA--NNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 319 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI---LQLPKAKHDFLHHLDISCN 375
           +YLDL  N++       L  ++  LE L L+ N    +   +   K     L  LD+S N
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK-----LKTLDLSSN 201

Query: 376 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 435
                +          + ++ +  N     I  +    + L   DL  N F  G  +   
Sbjct: 202 KLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 436 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
           +    ++ +             E   +  L H 
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 55/286 (19%), Positives = 101/286 (35%), Gaps = 25/286 (8%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNT 167
           ++ +   P  +L+ L+LS N+            L SL  L+ L L +NY        L  
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNY-----VQELLV 97

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISS 227
            PS+ TL    N I     ++     +    + L  N I           +R++ LD+  
Sbjct: 98  GPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 228 NQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE 286
           N+++  +   + ++  +LE+L+L +N       +      +KL+ L LS  +N L     
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKTLDLS--SNKLAFMGP 208

Query: 287 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
            +   + +  + L    L       L    +L++ DL  N             N +++ +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 347 LLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
             +           +     L H    C      LP      L  L
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCE---DLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 51/364 (14%), Positives = 107/364 (29%), Gaps = 77/364 (21%)

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 538
           I +   +    ++  ++++ L       +   +  ++ L +S N L       L    +L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 598
            +L++S N L        +LS++  L L  N +  L+ G                     
Sbjct: 61  ELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYVQELLVG--------------------- 98

Query: 599 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
                    ++  L    N++      +    + +    L+ NK +              
Sbjct: 99  --------PSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCR---- 143

Query: 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNR----SSNTMFGMWRWLSALEKRAAIDERVE 714
                    S++    LD       L  N     +   +      L  L           
Sbjct: 144 ---------SRVQ--YLD-------LKLNEIDTVNFAELAASSDTLEHL----------- 174

Query: 715 IEFAMKNR-YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP 773
                 N  Y++       ++  LDLS N+L   +  +      +  ++L NN L   I 
Sbjct: 175 --NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 774 ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESS 833
           ++    + +E  D+  N        +        +  V+   +   T    +  T     
Sbjct: 231 KALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 834 YRGN 837
           + G 
Sbjct: 290 HYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 39/246 (15%), Positives = 76/246 (30%), Gaps = 20/246 (8%)

Query: 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTL 168
            +        +++L  + N  +  S           +  K + L +N             
Sbjct: 91  YVQELLVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
             +  L L  N I+     +       L  +NL+ NFI    +       +LK LD+SSN
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSN 201

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW 288
           +L   +     +   + ++ L +N    +    +L     LE   L    N  H  T   
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLR--GNGFHCGTLRD 256

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
             +    V  + K  +        L   + +   +      G +    L       ++ L
Sbjct: 257 FFSKNQRVQTVAKQTVKK------LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 349 KNNSFS 354
            ++   
Sbjct: 311 GHHHHH 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 78/340 (22%), Positives = 123/340 (36%), Gaps = 46/340 (13%)

Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
           E + LDL  N     ++    D   S   L+ L L  N          N L +L TL L 
Sbjct: 33  ETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 178 WNRIEGSQTNQGICE-LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS 236
            NR+       G+   L NL ++++  N I   L    ++L  LK L++  N L      
Sbjct: 89  SNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 237 VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV 296
             S L SLE L L   N     P  +L++   L  L L    N   ++  ++    +L V
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR-HLNINAIRDYSFKRLYRLKV 204

Query: 297 LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356
           L ++      +     L+  +L  L ++H  L    P   +R+   L  L L  N  S I
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 357 -----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 411
                 +L +     L  + +                        +    F G       
Sbjct: 264 EGSMLHELLR-----LQEIQLVGGQLA-----------------VVEPYAFRG------- 294

Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 451
            +  L +L++S N  +  L +SV     +LE L L +N  
Sbjct: 295 -LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 4e-27
 Identities = 68/372 (18%), Positives = 121/372 (32%), Gaps = 64/372 (17%)

Query: 231 NGSLPSVISNL-TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWL 289
                +V   + T    LDL  N  +        A+   LE L L+   N +       +
Sbjct: 20  RKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELN--ENIVSA-----V 71

Query: 290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
                              P    + ++L+ L L  N+L    P  +      L  L + 
Sbjct: 72  E------------------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
            N    +L         L  L++  N+                    IS   F G     
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLV-----------------YISHRAFSG----- 150

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLR 466
              +  L  L L +   +  +    ++    L +L L + N        F     L RL+
Sbjct: 151 ---LNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFK---RLYRLK 203

Query: 467 HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 526
            L   +  +   +    L   +L  L I++  L+  +P+        L  L++S N +  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 527 NVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK- 584
                L+ L RL+ + +   +L+     +   L+ +  L++  N L   +   +F S   
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 585 LVTLNLRDNTFS 596
           L TL L  N  +
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 3e-25
 Identities = 64/383 (16%), Positives = 122/383 (31%), Gaps = 87/383 (22%)

Query: 195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
               ++L +N I +       +   L+ L+++ N ++   P   +NL +L  L L  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 255 EGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLH 314
           + + PL      S L  L +S   N + +     L                         
Sbjct: 93  K-LIPLGVFTGLSNLTKLDIS--ENKIVI-----LL------------------DYMFQD 126

Query: 315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 374
            Y+LK L++  N LV             LE L L+  + +                    
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-------------------- 165

Query: 375 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434
                                 I               +  L +L L     +  +    
Sbjct: 166 ---------------------SIPTEALSH--------LHGLIVLRLRHLNIN-AIRDYS 195

Query: 435 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLD 493
               + L++L++S+  +        +    L  L   + N +  +    +     L+ L+
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254

Query: 494 ISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 551
           +S N +S  I            L+ + +    L    P     L  LR+L++S N+L+  
Sbjct: 255 LSYNPIS-TIEG--SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT- 310

Query: 552 IASSL--NLSSVEHLSLQKNALN 572
           +  S+  ++ ++E L L  N L 
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 2e-23
 Identities = 67/359 (18%), Positives = 125/359 (34%), Gaps = 65/359 (18%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 498
              LLDL  N  +     E+ +   L  L    N  S  ++ G  ++  +L+ L + +N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 499 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLN 557
           L   IP  +    S L  L +S+N +   +     +L  L+ L++ +N L      +   
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGG 616
           L+S+E L+L+K  L  +    L     L+ L LR    +  I     +    L+ L +  
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISH 209

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGSDDVLNGSKLNSPEL 675
                 +         L  + ++    + ++P     ++               L    L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL-------------VYLR--FL 253

Query: 676 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 735
           +       L  N            +S +E                          + R+ 
Sbjct: 254 N-------LSYNP-----------ISTIEGSM---------L-----------HELLRLQ 275

Query: 736 GLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKL 792
            + L   QL   +       L  +  LN+S N L+ ++ ES F ++  +E+L +  N L
Sbjct: 276 EIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 2e-23
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 16/242 (6%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLRHLYFE 471
           E  LLDL +N     L+Q        LE L+L+ N     E   F+   NL  LR L   
Sbjct: 33  ETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN---NLFNLRTLGLR 88

Query: 472 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNV 528
           +N     I  G+ +  ++L  LDIS N +   +      F     L+ L +  N L    
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLD--YMFQDLYNLKSLEVGDNDLVYIS 144

Query: 529 PVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 587
               + L  L  L + +  L+  P  +  +L  +  L L+   +N +      R  +L  
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 588 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 647
           L +    +   +        NL  L +   +L       +  L  L  ++LS N  S +I
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TI 263

Query: 648 PP 649
             
Sbjct: 264 EG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 14/269 (5%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLP 169
           F+ L  L++L L  N                L  L  L +  N      D +F     L 
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPL----GVFTGLSNLTKLDISENKIVILLDYMFQ---DLY 128

Query: 170 SLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ 229
           +L +L +  N +    +++    L +L ++ LE+  + S     L +L  L +L +    
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 230 LNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWL 289
           +N         L  L+ L++SH  +      + L   + L  L ++   N   V      
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSIT-HCNLTAVPYLAVR 245

Query: 290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
               L  L L+   ++      L     L+ + L   +L      +  R    L VL + 
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVS 304

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFR 378
            N  + + +        L  L +  N   
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 8e-21
 Identities = 63/267 (23%), Positives = 99/267 (37%), Gaps = 16/267 (5%)

Query: 92  LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILV 151
           L N   L    +   L+ + +F  L  L  LD+S N       +      + L  LK L 
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV----ILLDYMFQDLYNLKSLE 134

Query: 152 LGHN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS 208
           +G N   Y     FS    L SL  L L    +    T   +  L  L  + L    I +
Sbjct: 135 VGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINA 190

Query: 209 PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 268
                 K L RLK+L+IS      ++        +L  L ++H N     P  ++ +   
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVY 249

Query: 269 LEGLLLSTRNNTLHVKTENWL-PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 327
           L  L LS   N +     + L    +L  + L    L    P       +L+ L++S N+
Sbjct: 250 LRFLNLS--YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 328 LVGNFPTWLLRNNPKLEVLLLKNNSFS 354
           L       +  +   LE L+L +N  +
Sbjct: 308 LT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 4e-20
 Identities = 70/362 (19%), Positives = 128/362 (35%), Gaps = 56/362 (15%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           S   + +          +P       +E  +L + KN ++     +  +   L  L+++E
Sbjct: 10  SAQDRAVLCHRKRFV-AVP---EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 546 NRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
           N +S  +      NL ++  L L+ N L  LIP  +F     L  L++ +N     +   
Sbjct: 66  NIVSA-VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 603 INEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVG 660
           + +   NL+ L +G N L          L  L  + L +   + SIP    +++      
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLI-- 179

Query: 661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 720
                         L        L +   +      ++ L  L+        +EI     
Sbjct: 180 -------------VLR-------LRHLNINAIRDYSFKRLYRLK-------VLEISHWPY 212

Query: 721 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD-IGQLQAILALNLSNNSLSGSIPESFSNL 779
                 N      +T L ++   LT  +P   +  L  +  LNLS N +S         L
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 780 KMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNP 838
             ++ + +   +L   + P     LN+L + NVS N L+          T +ES +    
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT----------TLEESVFHSVG 320

Query: 839 SL 840
           +L
Sbjct: 321 NL 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (300), Expect = 4e-28
 Identities = 69/359 (19%), Positives = 132/359 (36%), Gaps = 27/359 (7%)

Query: 191 CELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLS 250
           C   ++   +++              L   KI+   ++ +     +++ +   +E L+L+
Sbjct: 27  CVFYDV---HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 251 HNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPD 310
               E      + A    ++ L +   N   ++    +     L VL L + +L+     
Sbjct: 84  DLQIE-EIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 311 FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 370
              +   L  L +S+N L         +    L+ L L +N    +  +  +    L H 
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR---LTHVDLSLIPSLFHA 197

Query: 371 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGL 430
           ++S N     L      I   +  +D S N     +        EL++L L  N  +   
Sbjct: 198 NVSYNLLS-TLA-----IPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNLT--- 245

Query: 431 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ 490
             + +     L  +DLS N  E   +  ++ + RL  LY  NN     +        +L+
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549
           VLD+S+N L  H+      F   LE L +  N +     ++L+    L+ L +S N   
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 1e-22
 Identities = 95/542 (17%), Positives = 171/542 (31%), Gaps = 51/542 (9%)

Query: 115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSL 171
            L   + +    +             L S +Q+++L L        D   F+Y     ++
Sbjct: 49  TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTI 101

Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
             L + +N I     +     +  L  + LERN + S       N  +L  L +S+N L 
Sbjct: 102 QKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160

Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 291
                     TSL+ L LS N       LS + +   L    +S   N L          
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVS--YNLLSTLAIP---- 210

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 351
             +  L  +  ++N       +    L  L L HN L  +     L N P L  + L  N
Sbjct: 211 IAVEELDASHNSINVVRGPVNV---ELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYN 264

Query: 352 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 411
               I+  P  K   L  L IS N     L    G  +  L  +D+S N    ++  +  
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLL-HVERNQP 321

Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEGQFFSEYM-NLTRLR--- 466
           +   L  L L  N        ++      +L+ L LS+N+++         N+ R     
Sbjct: 322 QFDRLENLYLDHNSIV-----TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 376

Query: 467 ---HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523
              H   +     G            ++L                   S  + ++  ++ 
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSL 436

Query: 524 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 583
                      L+    L+   N L         +  + +  +Q+  L   +  E+  + 
Sbjct: 437 SHYITQQGGVPLQGNEQLEAEVNEL------RAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490

Query: 584 KLVTLNLRDNTFSGRIPHQINEHSNLR--FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
           +   L       S    +++  H   R  F L      +     +  + + L   +++  
Sbjct: 491 RRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550

Query: 642 KF 643
           K 
Sbjct: 551 KQ 552

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.6 bits (222), Expect = 2e-18
 Identities = 84/521 (16%), Positives = 170/521 (32%), Gaps = 48/521 (9%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSY 164
           L   +F  +  L  L L  N  +   +        +  +L  L + +N     +D  F  
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
                SL  L L  NR+     +     + +LF  N+  N     L++ L     ++ LD
Sbjct: 170 ---TTSLQNLQLSSNRLTHVDLSL----IPSLFHANVSYN-----LLSTLAIPIAVEELD 217

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK 284
            S N +N  +         L  L L HNN       + L N+  L  + LS  N    + 
Sbjct: 218 ASHNSIN-VVRG--PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLS-YNELEKIM 270

Query: 285 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344
              ++   +L  L ++   L  +   +      LK LDLSHN L+ +          +LE
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLE 327

Query: 345 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG 404
            L L +NS      L  + H  L +L +S N++       +   + +    D  ++C   
Sbjct: 328 NLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384

Query: 405 NI-------PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS 457
                      S     +  L  ++       + ++    C + + ++   +        
Sbjct: 385 YQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRA-QGRCSATDTINSVQSLSHYITQQ 443

Query: 458 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 517
             + L     L  E N    +++   L++  +Q   +   + +    +       +  + 
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQ--LTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA 501

Query: 518 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPG 577
             S N  +    ++     +LR                     +E  ++           
Sbjct: 502 RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK---ETEDLEQENIALEKQLDNKRA 558

Query: 578 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 618
           +          +L+      ++  + N + + R +    +H
Sbjct: 559 KQAEL--RQETSLKRQKVK-QLEAKKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 3e-16
 Identities = 51/338 (15%), Positives = 131/338 (38%), Gaps = 30/338 (8%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
                  D+  +M +  +     + + +  +I++   + +       L++  ++ +L+++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 545 ENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
           + ++      +     +++ L +  NA+  L P  +F++   L  L L  N  S  +P  
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 603 INEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVG 660
           I  +   L  L +  N+L+    D       L  + LS N+ +  +      ++      
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHAN-- 198

Query: 661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 720
               ++ + L++  +   +E     +N            ++ +     ++    ++    
Sbjct: 199 ----VSYNLLSTLAIPIAVEELDASHNS-----------INVVRGPVNVELT-ILKLQHN 242

Query: 721 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNL 779
           N  +     N   +  +DLS N+L  +I      ++Q +  L +SNN L  ++      +
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 780 KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
             ++ LD+S+N L   +       + L    + +N++ 
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 32/190 (16%), Positives = 73/190 (38%), Gaps = 7/190 (3%)

Query: 457 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI 516
           S          ++ +            ++  + +++   N+ +   +P  + +   ++E+
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 79

Query: 517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLI 575
           L+++   +E            ++ L +  N +   P     N+  +  L L++N L+ L 
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 576 PGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLA 634
            G    + KL TL++ +N    RI     +  ++L+ L L  N L       +  L    
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA- 197

Query: 635 MMDLSRNKFS 644
             ++S N  S
Sbjct: 198 --NVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 63/382 (16%), Positives = 119/382 (31%), Gaps = 67/382 (17%)

Query: 107 LLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLN 166
           L + +       L  +DLS N          Y     +++L+ L + +N    ++  Y  
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFVKMQRLERLYISNNRL-VALNLYGQ 298

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
            +P+L  L L  N +                  ++ERN              RL+ L + 
Sbjct: 299 PIPTLKVLDLSHNHLL-----------------HVERNQ---------PQFDRLENLYLD 332

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE 286
            N +  +L   +S   +L+ L LSHN+++     +   N ++      +  +   H K +
Sbjct: 333 HNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR-----PAVDDADQHCKID 384

Query: 287 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
             L        GL     +  Y D LL    L  +     +  G             + +
Sbjct: 385 YQLEH------GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA--------TDTI 430

Query: 347 LLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL-----MYMDISKNC 401
               +    I Q           L+   N  R ++       +Q+      ++ +I  N 
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490

Query: 402 FEGNIPYSA-----GEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFE 452
               +P          + ++      R  F    +Q+  T   +     E L+  N   E
Sbjct: 491 RRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550

Query: 453 GQFFSEYMNLTRLRHLYFENNN 474
            Q  ++      LR        
Sbjct: 551 KQLDNKRAKQAELRQETSLKRQ 572

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-23
 Identities = 81/403 (20%), Positives = 150/403 (37%), Gaps = 50/403 (12%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
             +  +D+S N +     +  S L  L++L +       +   ++    S L  L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-Y 88

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSY--PDFLLHQYHLKYLDLSHNKLVGNFPTW 335
           N  L ++T  +   + L VL LT+CNL+G+    +F      L+ L L  N +    P  
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 336 LLRNNPKLEVLLLKNNSFS----GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQK 391
              N  +  VL L  N         L   + KH     L +S    +             
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH--FTLLRLSSITLQ------------- 193

Query: 392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 451
               D+++         +  +   ++ LDLS N F   +++         ++  L  +N 
Sbjct: 194 ----DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 452 EGQFFSEYMN--------------LTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISN 496
                S                   + ++      +     +   + S  T L+ L ++ 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQ 308

Query: 497 NMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSG-PI 552
           N ++  I      F   + L  L++S+N L G++  ++  NL++L +LD+S N +     
Sbjct: 309 NEIN-KIDD--NAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGD 364

Query: 553 ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 595
            S L L +++ L+L  N L  +  G   R   L  + L  N +
Sbjct: 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 4e-23
 Identities = 83/428 (19%), Positives = 142/428 (33%), Gaps = 77/428 (17%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
           +   ++   +    LN + F  L++LQ L +          V   ++ R L  L IL L 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLD 87

Query: 154 HN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL 210
           +N     +   F+    L +L  L L    ++G+  +                       
Sbjct: 88  YNQFLQLETGAFN---GLANLEVLTLTQCNLDGAVLSGN--------------------- 123

Query: 211 ITCLKNLTRLKILDISSNQLNGSLP-SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
               K LT L++L +  N +    P S   N+     LDL+ N  +       L N    
Sbjct: 124 --FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGK 180

Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL- 328
              LL   + TL    E WL   +                        +  LDLS N   
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGN---------------PFKNTSITTLDLSGNGFK 225

Query: 329 -----------VGNFPTWLLRNNPKLEVLLLKNNSFSGI--LQLPKAKHDFLHHLDISCN 375
                       G     L+ +N         + +F           +   +   D+S +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285

Query: 376 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLSQSV 434
                L  ++      L  + +++N     I  +A   +  L  L+LS+N+    +   +
Sbjct: 286 KIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRM 342

Query: 435 VTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSL 489
                 LE+LDLS N+     +  F    + L  L+ L  + N     + DG+    TSL
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQSF----LGLPNLKELALDTNQLK-SVPDGIFDRLTSL 397

Query: 490 QVLDISNN 497
           Q + +  N
Sbjct: 398 QKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 79/381 (20%), Positives = 139/381 (36%), Gaps = 52/381 (13%)

Query: 463 TRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 521
             + ++    N+ + ++ +   S    LQ L +        I +      S L IL +  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 522 NHLEGNVPVQ-LNNLERLRILDISENRL-SGPIASSL--NLSSVEHLSLQKNALNGLIPG 577
           N     +     N L  L +L +++  L    ++ +    L+S+E L L+ N +  + P 
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 578 ELFRS-CKLVTLNLRDNTFSGRIPHQI---NEHSNLRFLLLGGNHLQGPIPDQLCQ---- 629
             F +  +   L+L  N     I  +     +  +   L L    LQ      L      
Sbjct: 148 SFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 630 ----LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL-DEEIEFGSL 684
                  +  +DLS N F  S+   F           D + G+K+ S  L +      S 
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRF----------FDAIAGTKIQSLILSNSYNMGSSF 256

Query: 685 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNG--SNVNRVTGLDLSCN 742
           G+    +     ++ L A   +         + +    + +     S+   +  L L+ N
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVK-------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 743 QLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTGQIPPQ- 799
           ++  +I  +    L  +L LNLS N L  SI    F NL  +E LD+SYN +   +  Q 
Sbjct: 310 EIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQS 366

Query: 800 ---LTALNFLSIFNVSYNNLS 817
              L  L  L++     N L 
Sbjct: 367 FLGLPNLKELALDT---NQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 79/448 (17%), Positives = 143/448 (31%), Gaps = 98/448 (21%)

Query: 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 425
           ++++D+S N+   +L       LQ L ++ + +      I  +    +  L +L L  N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNFSGKIKDGL 483
           F   L      G  +LE+L L+  N +G   S      LT L  L   +NN         
Sbjct: 91  FLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 484 LSS-TSLQVLDISNNMLSGHIPH--WMGNFSSELEILSMSKNHLEGNVPVQL-------- 532
             +     VLD++ N +   I     +        +L +S   L+      L        
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 533 NNLERLRILDISENRL----SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 588
                +  LD+S N      +     ++  + ++ L L  +   G               
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS------SFGHTNFK 262

Query: 589 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ---GPIPDQLCQLQKLAMMDLSRNKFSG 645
           +  + TF G       E S ++   L  + +      +      L++L    L++N+ + 
Sbjct: 263 DPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL---TLAQNEIN- 312

Query: 646 SIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALE 704
            I    F  +             + L   +L+       L  N   +    M+  L  LE
Sbjct: 313 KIDDNAFWGL-------------THLL--KLN-------LSQNFLGSIDSRMFENLDKLE 350

Query: 705 KRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNL 763
                                           LDLS N +   +       L  +  L L
Sbjct: 351 V-------------------------------LDLSYNHIR-ALGDQSFLGLPNLKELAL 378

Query: 764 SNNSLSGSIPES-FSNLKMIESLDISYN 790
             N L  S+P+  F  L  ++ + +  N
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 38/169 (22%), Positives = 53/169 (31%), Gaps = 37/169 (21%)

Query: 90  LSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149
           L        +        L  S+F    +L+ L L+ N           ++   L  L  
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NAFWGLTHLLK 327

Query: 150 LVLGHN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI 206
           L L  N     D  +F     L  L  L L +N I               F         
Sbjct: 328 LNLSQNFLGSIDSRMFE---NLDKLEVLDLSYNHIRALG--------DQSFL-------- 368

Query: 207 GSPLITCLKNLTRLKILDISSNQLNGSLPSVI-SNLTSLEYLDLSHNNF 254
                     L  LK L + +NQL  S+P  I   LTSL+ + L  N +
Sbjct: 369 ---------GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 47/286 (16%), Positives = 86/286 (30%), Gaps = 48/286 (16%)

Query: 538 LRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTF 595
           +  +D+S N ++     S   L  ++ L +++     +I    FR    L+ L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 596 SGRIPHQINEH-SNLRFLLLGGNHLQGPI--PDQLCQLQKLAMMDLSRNKFSGSIPPCFA 652
             ++        +NL  L L   +L G +   +    L  L M+ L  N     I P   
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQP--- 146

Query: 653 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER 712
                       +   + +   LD       L  N+  +                     
Sbjct: 147 ------ASFFLNM--RRFH--VLD-------LTFNKVKSICEEDLLNFQGKHFT------ 183

Query: 713 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI 772
                       +   S     T  D++   L  E   +  +  +I  L+LS N    S+
Sbjct: 184 -----------LLRLSSI----TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 773 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 818
            + F +      +       +  +       NF    N ++  L  
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 4e-23
 Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 30/331 (9%)

Query: 214 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
             + +  + L    +        V+S        D +  +          AN +  +   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIET 62

Query: 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 333
            + R                 + L L    L   +PD      HL+++ +    L+   P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 334 TWLLRNNPKLEVLLLKNNSF----SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI- 388
              ++    LE L L  N      + I  L +     L  L I       +LP  +    
Sbjct: 121 DT-MQQFAGLETLTLARNPLRALPASIASLNR-----LRELSIRACPELTELPEPLASTD 174

Query: 389 -------LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 441
                  L  L  + +       ++P S   ++ L  L +  +  S  L  + +     L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKL 231

Query: 442 ELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 501
           E LDL        +   +     L+ L  ++ +    +   +   T L+ LD+   +   
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQL 532
            +P  +    +   I+ +   HL+  +    
Sbjct: 292 RLPSLIAQLPA-NCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 9e-23
 Identities = 51/308 (16%), Positives = 103/308 (33%), Gaps = 27/308 (8%)

Query: 362 AKHDFLHH------LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 415
           + H   HH      L    +         +    Q+    D ++     +  +       
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNN 57

Query: 416 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 475
             +   +                     L+L +     QF  +   L+ L+H+  +    
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 476 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLE--------G 526
             ++ D +     L+ L ++ N L   +P  + + +  L  LS+     L          
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR-LRELSIRACPELTELPEPLAST 173

Query: 527 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
           +   +   L  L+ L +    +    AS  NL +++ L ++ + L+ L    +    KL 
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLE 232

Query: 587 TLNLRDNTFSGRIPHQINEHSNLRFL-LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 645
            L+LR  T     P      + L+ L L   ++L   +P  + +L +L  +DL       
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLS 291

Query: 646 SIPPCFAN 653
            +P   A 
Sbjct: 292 RLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 30/339 (8%)

Query: 294 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 353
              L          Y D L         D +          W   N+   ++      + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA-----WRQANSNNPQIETRTGRAL 68

Query: 354 SGIL-QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 412
                 L  A       L++       + P      L  L +M I        +P +  +
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 472
              L  L L+RN     L  S+      L  L +                  L  L    
Sbjct: 126 FAGLETLTLARNPLRA-LPASI-ASLNRLRELSIRACP-------------ELTELPEPL 170

Query: 473 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 532
            +     +   L   +LQ L +    +   +P  + N  + L+ L +  + L   +   +
Sbjct: 171 ASTDASGEHQGL--VNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LGPAI 225

Query: 533 NNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
           ++L +L  LD+                + ++ L L+  +    +P ++ R  +L  L+LR
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 592 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 630
                 R+P  I +      +L+  +        +    
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 57/313 (18%), Positives = 100/313 (31%), Gaps = 55/313 (17%)

Query: 505 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 564
           H   + SS  E L    +         L+  +R    D +    +   A   N ++ +  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIE 61

Query: 565 SLQKNALNGLIPG-ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI 623
           +    AL       E       V L LR      + P Q    S+L+ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-L 119

Query: 624 PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS-PELDEEIEFG 682
           PD + Q   L  + L+RN    ++P   A++   R      L+        EL E +   
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE-----LSIRACPELTELPEPL--- 170

Query: 683 SLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN 742
              +  +S    G    L  L+                                L L   
Sbjct: 171 --ASTDASGEHQG----LVNLQS-------------------------------LRLEWT 193

Query: 743 QLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 802
            +   +P+ I  LQ + +L + N+ LS ++  +  +L  +E LD+         PP    
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 803 LNFLSIFNVSYNN 815
              L    +   +
Sbjct: 252 RAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 2e-19
 Identities = 55/361 (15%), Positives = 102/361 (28%), Gaps = 52/361 (14%)

Query: 232 GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 291
           GS      + +  E L    +       L     H  L         +     +      
Sbjct: 2   GSSHHHHHHSSGRENLYFQGST-----ALRPY--HDVLSQWQRHYNADRNRWHSAWRQAN 54

Query: 292 SQLIVLGLTKCNLNGSYPDFL--LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
           S    +         +  D L    Q     L+L    L   FP                
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP---------------- 97

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
                   +L       L H+ I       +LP  M      L  + +++N     +P S
Sbjct: 98  ----DQAFRLSH-----LQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPAS 145

Query: 410 AGEMKELSLLDLSRN--------YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN 461
              +  L  L +             +   +     G  +L+ L L          +   N
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 462 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS- 520
           L  L+ L   N+  S  +   +     L+ LD+       + P   G  +  L+ L +  
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLILKD 262

Query: 521 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGEL 579
            ++L   +P+ ++ L +L  LD+        + S +  L +   + +  +    L     
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 580 F 580
            
Sbjct: 322 V 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 2e-18
 Identities = 49/320 (15%), Positives = 93/320 (29%), Gaps = 47/320 (14%)

Query: 139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQT---NQGICELKN 195
           D L   ++           D + +       +     +        +             
Sbjct: 30  DVLSQWQRHYNA-------DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG 82

Query: 196 LFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE 255
              + L    +          L+ L+ + I +  L   LP  +     LE L L+ N   
Sbjct: 83  RVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

Query: 256 GMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ 315
              P +S+A+ ++L  L +      L       LP      L       +          
Sbjct: 141 A-LP-ASIASLNRLRELSIR-ACPELTE-----LPEP----LA------STDASGEHQGL 182

Query: 316 YHLKYLDLSHNKLVGNFPTWL--LRNNPKLEVLLLKNNSF----SGILQLPKAKHDFLHH 369
            +L+ L L    +  + P  +  L+N   L+ L ++N+        I  LPK     L  
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQN---LKSLKIRNSPLSALGPAIHHLPK-----LEE 233

Query: 370 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 429
           LD+         P   G     L  + +        +P     + +L  LDL        
Sbjct: 234 LDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 430 LSQSVVTGCFSLELLDLSNN 449
           L    +    +  ++ +  +
Sbjct: 293 LPSL-IAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 7e-11
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           L+L    L  + P    +L  +  + +    L   +P++      +E+L ++ N L   +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 797 PPQLTALNFLSIFNVSYNNLSGRTPD 822
           P  + +LN L   ++         P+
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN----YFDDSI-----FSYLN 166
              L++L L+ N            S+ SL +L+ L +          + +          
Sbjct: 126 FAGLETLTLARNPLRALP-----ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
            L +L +L L W  I        I  L+NL  + +  + + + L   + +L +L+ LD+ 
Sbjct: 181 GLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
                 + P +      L+ L L   +     P   +   ++LE L L 
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 737 LDLS-CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795
           LDL  C  L    P   G    +  L L + S   ++P     L  +E LD+       +
Sbjct: 234 LDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 796 IPPQLTALNFLSIFNVSYNNLS 817
           +P  +  L    I  V  +  +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS-YNKLTGQ 795
           L +  + L+  +   I  L  +  L+L   +   + P  F     ++ L +   + L   
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-T 268

Query: 796 IPPQLTALNFLSIFNVSYNN 815
           +P  +  L  L   ++    
Sbjct: 269 LPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI---------ESLDI 787
           L L+ N L   +P+ I  L  +  L++        +PE  ++             +SL +
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 788 SYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
            +  +   +P  +  L  L    +  + LS
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 737 LDLS-CNQLTGEIPSDIGQLQAILA---------LNLSNNSLSGSIPESFSNLKMIESLD 786
           L +  C +LT E+P  +    A            L L    +  S+P S +NL+ ++SL 
Sbjct: 155 LSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 787 ISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816
           I  + L+  + P +  L  L   ++     
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 737 LDLS-CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795
           L L  C+ L   +P DI +L  +  L+L        +P   + L     + +  +     
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 796 IPPQLTAL 803
              +  A 
Sbjct: 317 DQHRPVAR 324

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  102 bits (257), Expect = 4e-23
 Identities = 88/435 (20%), Positives = 156/435 (35%), Gaps = 77/435 (17%)

Query: 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDD----SIFSYLNTLPSLC 172
            ++QSLD+     +        + L  L+Q +++ L      +     I S L   P+L 
Sbjct: 3   LDIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 173 TLILHWNRIEGSQTNQGICE-LKN----LFEMNLERNFIG----SPLITCLKNLTRLKIL 223
            L L  N + G      + + L+     + +++L+   +       L + L+ L  L+ L
Sbjct: 60  ELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 224 DISSNQLNGS-----LPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLLS 275
            +S N L  +        ++     LE L L + +       PL+S L      + L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 276 TRNNTLHVKTENWL------PTSQLIVLGLTKCNLN----GSYPDFLLHQYHLKYLDLSH 325
             NN ++      L         QL  L L  C +           +  +  L+ L L  
Sbjct: 179 --NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 326 NKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--GILQLPKA--KHDFLHHLDISCNNF 377
           NKL    +      LL  + +L  L +     +  G   L +     + L  L ++ N  
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ---SV 434
             +     G  L       + +   E           +L  L +    F+        SV
Sbjct: 297 GDE-----GARL-------LCETLLEPG--------CQLESLWVKSCSFTAACCSHFSSV 336

Query: 435 VTGCFSLELLDLSNNNFEG---QFFSEYM--NLTRLRHLYFENNNFSGK----IKDGLLS 485
           +     L  L +SNN  E    +   + +    + LR L+  + + S      +   LL+
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 486 STSLQVLDISNNMLS 500
           + SL+ LD+SNN L 
Sbjct: 397 NHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 96.2 bits (240), Expect = 6e-21
 Identities = 83/482 (17%), Positives = 138/482 (28%), Gaps = 101/482 (20%)

Query: 194 KNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLN----GSLPSVISNLTSLEYLD 248
            ++  ++++   +        L  L + +++ +    L       + S +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 249 LSHNNF--EGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG 306
           L  N     G+  +                             P+ ++  L L  C L G
Sbjct: 63  LRSNELGDVGVHCVLQGLQT-----------------------PSCKIQKLSLQNCCLTG 99

Query: 307 SY----PDFLLHQYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--GI 356
           +        L     L+ L LS N L    +      LL    +LE L L+  S S    
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 357 LQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMK 414
             L            L +S N+         GV  + L        C             
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDIN-----EAGV--RVLCQGLKDSPC------------- 199

Query: 415 ELSLLDLSRNYFS----GGLSQSVVTGCFSLELLDLSNNNFEG---QFFSEYM--NLTRL 465
           +L  L L     +      L   +V    SL  L L +N             +    +RL
Sbjct: 200 QLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 466 RHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSG----HIPHWMGNFSSELEIL 517
           R L+      + K    +   L +  SL+ L ++ N L       +   +     +LE L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 518 SMSKNHLEGNVPVQ-----LNNLERLRILDISENRLSGPIASSL------NLSSVEHLSL 566
            +                 L     L  L IS NRL       L        S +  L L
Sbjct: 319 WVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 567 QKNAL--NGLIP-GELFRSCK-LVTLNLRDNTFSGRIPHQINE-----HSNLRFLLLGGN 617
               +  +          +   L  L+L +N        Q+ E        L  L+L   
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 618 HL 619
           + 
Sbjct: 438 YW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 85/429 (19%), Positives = 138/429 (32%), Gaps = 86/429 (20%)

Query: 107 LLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYL- 165
            +   L  P  ++Q L L     T         +LR+L  L+ L L  N   D+    L 
Sbjct: 75  CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134

Query: 166 ----NTLPSLCTLILHWNRIEGSQTNQGICEL----KNLFEMNLERNFIGSP----LITC 213
               +    L  L L +  +  + + + +  +     +  E+ +  N I       L   
Sbjct: 135 EGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193

Query: 214 LKNLT-RLKILDISSNQLN----GSLPSVISNLTSLEYLDLSHNNF--EGMFPLSS--LA 264
           LK+   +L+ L + S  +       L  ++++  SL  L L  N     GM  L    L 
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLS 324
             S+L  L +      +  K          +   L                  LK L L+
Sbjct: 254 PSSRLRTLWIW--ECGITAK------GCGDLCRVLRAKE-------------SLKELSLA 292

Query: 325 HNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--GILQLPKA--KHDFLHHLDISCNN 376
            N+L           LL    +LE L +K+ SF+            ++ FL  L IS N 
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLSQ 432
                  + GV    L                       L +L L+    S      L+ 
Sbjct: 353 LE-----DAGVRE--LCQGLGQPGS-------------VLRVLWLADCDVSDSSCSSLA- 391

Query: 433 SVVTGCFSLELLDLSNNNFE---GQFFSEYM--NLTRLRHLYFENNNFSGK----IKDGL 483
           + +    SL  LDLSNN           E +      L  L   +  +S +    ++   
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451

Query: 484 LSSTSLQVL 492
               SL+V+
Sbjct: 452 KDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 69/385 (17%), Positives = 125/385 (32%), Gaps = 64/385 (16%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS--GILQLPKA--KHDFLHHLDIS 373
           ++ LD+   +L       LL    + +V+ L +   +      +  A   +  L  L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 374 CNNFRGKLPHNMGVILQ----KLMYMDISKNCF--EG--NIPYSAGEMKELSLLDLSRNY 425
            N       H +   LQ    K+  + +   C    G   +  +   +  L  L LS N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 426 FSGG----LSQSVVTGCFSLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYFENNNFSG 477
                   L + ++     LE L L   +          S        + L   NN+ + 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 478 K----IKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSS------ELEILSMSKNHLEG 526
                +  GL  S   L+ L + +  ++        +          L  L++  N L  
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 527 N-----VPVQLNNLERLRILDISENRLSGP----IASSL-NLSSVEHLSLQKNAL----- 571
                  P  L+   RLR L I E  ++      +   L    S++ LSL  N L     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 572 NGLIPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGP----- 622
             L    L   C+L +L ++  +F+          + ++  L  L +  N L+       
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 623 ---IPDQLCQLQKLAMMDLSRNKFS 644
              +      L+ L    L+    S
Sbjct: 362 CQGLGQPGSVLRVL---WLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 49/193 (25%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           S  +Q LDI    LS           +    L              L  L++ +++ + +
Sbjct: 2   SLDIQSLDIQCEELS----------DARWAEL--------------LPLLQQCQVVRLDD 37

Query: 546 NRLS----GPIASSL-NLSSVEHLSLQKNALNG-----LIPGELFRSCKLVTLNLRDNTF 595
             L+      I+S+L    ++  L+L+ N L       ++ G    SCK+  L+L++   
Sbjct: 38  CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 596 SGR----IPHQINEHSNLRFLLLGGNHLQGP--------IPDQLCQLQKLAMMDLSRNKF 643
           +G     +   +     L+ L L  N L           + D  C+L+KL    L     
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL---QLEYCSL 154

Query: 644 SGSIPPCFANVLS 656
           S +     A+VL 
Sbjct: 155 SAASCEPLASVLR 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (250), Expect = 4e-23
 Identities = 51/240 (21%), Positives = 81/240 (33%), Gaps = 10/240 (4%)

Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN--YFDDSIFSYLNTLPSLCTLI 175
               L+L  N                L QL  L L  N   F            SL  L 
Sbjct: 29  SATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSL 234
           L +N +    +      L+ L  ++ + + +      +   +L  L  LDIS      + 
Sbjct: 85  LSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 235 PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQL 294
             + + L+SLE L ++ N+F+  F          L  L LS +     +    +   S L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSL 201

Query: 295 IVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 354
            VL ++  N              L+ LD S N ++ +    L      L  L L  N F+
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 5e-20
 Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 29/259 (11%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
               L+L  NKL  + P  +     +L  L L +N               L        +
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG--------------LSFKGCCSQS 73

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436
             G            L Y+D+S N     +  +   +++L  LD   +        SV  
Sbjct: 74  DFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDIS 495
              +L  LD+S+ +    F   +  L+ L  L    N+F       + +   +L  LD+S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 496 NNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 555
              L   +     N  S L++L+MS N+           L  L++LD S N +       
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 556 LN--LSSVEHLSLQKNALN 572
           L    SS+  L+L +N   
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 54/289 (18%), Positives = 93/289 (32%), Gaps = 56/289 (19%)

Query: 166 NTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLIT--CLKNLTRLKIL 223
               S   L L  N+++         +L  L +++L  N +             T LK L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 224 DISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHV 283
           D+S N +  ++ S    L  LE+LD  H+N      L  ++  S    L           
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSN------LKQMSEFSVFLSL----------- 125

Query: 284 KTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL 343
                     LI L ++  +   ++         L+ L ++ N    NF   +      L
Sbjct: 126 --------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 344 EVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 403
             L L       +          L  L++S NNF                   +    ++
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----------------SLDTFPYK 220

Query: 404 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNF 451
                    +  L +LD S N+      +  +     SL  L+L+ N+F
Sbjct: 221 C--------LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 11/224 (4%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK-IKDGLLSS-TSLQVLDISNN 497
           S   L+L +N  +      +  LT+L  L   +N  S K          TSL+ LD+S N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSG-PIASS 555
            +   +          LE L    ++L+      +  +L  L  LDIS            
Sbjct: 89  GVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 556 LNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEH-SNLRFLL 613
             LSS+E L +  N+       ++F     L  L+L       ++        S+L+ L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 614 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLS 656
           +  N+           L  L ++D S N    +       +  S
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPS 248

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 56/242 (23%), Positives = 91/242 (37%), Gaps = 17/242 (7%)

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLL 347
           +P+S    L L    L             L  L LS N L      +        L+ L 
Sbjct: 26  IPSS-ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 348 LKNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 405
           L  N    ++ +       + L HLD   +N +     ++ + L+ L+Y+DIS       
Sbjct: 85  LSFNG---VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 140

Query: 406 IPYSA-GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMN 461
                   +  L +L ++ N F       + T   +L  LDLS           F+   +
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---S 197

Query: 462 LTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 520
           L+ L+ L   +NNF   +         SLQVLD S N +       + +F S L  L+++
Sbjct: 198 LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 521 KN 522
           +N
Sbjct: 257 QN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLE--GNVPVQLNNLERLRIL 541
            +S   L++ +N L   +PH  G F   ++L  LS+S N L   G           L+ L
Sbjct: 27  PSSATRLELESNKLQ-SLPH--GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 542 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIP 600
           D+S N +    ++ L L  +EHL  Q + L  +    +F S   L+ L++          
Sbjct: 84  DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAF 142

Query: 601 HQINEH-SNLRFLLLGGN-HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
           + I    S+L  L + GN   +  +PD   +L+ L  +DLS+ +    + P
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 9e-13
 Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 64/311 (20%)

Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
           S   +  ++  L+  +P       S    L +  N L+       + L +L  L +S N 
Sbjct: 8   SGTEIRCNSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 548 LSGPIASS---LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI- 603
           LS     S      +S+++L L  N +   +        +L  L+ + +         + 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 604 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSD 662
               NL +L +   H +         L  L ++ ++ N F  +  P  F  +        
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-------- 174

Query: 663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 722
                  L    LD       L   +        +  LS+L+                  
Sbjct: 175 -----RNLT--FLD-------LSQCQLEQLSPTAFNSLSSLQV----------------- 203

Query: 723 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL-KM 781
                         L++S N            L ++  L+ S N +  S  +   +    
Sbjct: 204 --------------LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 782 IESLDISYNKL 792
           +  L+++ N  
Sbjct: 250 LAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 729 SNVNRVTGLDLSCNQLT-GEIPSDIGQ-LQAILALNLSNNSLSGSIPESFSNLKMIESLD 786
             + ++T L LS N L+     S       ++  L+LS N +  ++  +F  L+ +E LD
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 787 ISYNKLTGQIPPQ-----LTALNFLSIFNVSYNNLS 817
             ++ L  Q+        L  L +L I   S+ +  
Sbjct: 108 FQHSNLK-QMSEFSVFLSLRNLIYLDI---SHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS--GSIPESFSNLKMIESLDISYNK 791
            T L+L  N+L         +L  +  L+LS+N LS  G   +S      ++ LD+S+N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 792 LTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA 827
           +   +      L  L   +  ++NL  +  +   F 
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 737 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795
           LD   + L       +   L+ ++ L++S+     +    F+ L  +E L ++ N     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 796 IPPQ-LTALNFLSIFNVSYNNLS 817
             P   T L  L+  ++S   L 
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ- 795
           +  +   LT  +P+ I    +   L L +N L       F  L  +  L +S N L+ + 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 796 -IPPQLTALNFLSIFNVSYNNLSGRTPD 822
                      L   ++S+N +   + +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSN 96

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (254), Expect = 2e-22
 Identities = 72/388 (18%), Positives = 132/388 (34%), Gaps = 49/388 (12%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
               L++  + L    P  L  +   +  L++ +N+ + +  LP      L  L++S N 
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPAH---ITTLVIPDNNLTSLPALPPE----LRTLEVSGNQ 92

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436
               LP      L +L                       L  L +  N  +     S+  
Sbjct: 93  LT-SLPVLPPG-LLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-----SLPV 138

Query: 437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 496
               L+ L +S+N       S     + L  L+  NN  +  +       + LQ L +S+
Sbjct: 139 LPPGLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSD 190

Query: 497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 556
           N L+  +P         L  L    N L  ++P   + L+ L    +S NRL+       
Sbjct: 191 NQLA-SLPTLPSE----LYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLTSLPVL-- 239

Query: 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
             S ++ L +  N L  L P        L++L++  N  + R+P  +   S+   + L G
Sbjct: 240 -PSELKELMVSGNRLTSL-PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 676
           N L       L ++           +F  +         +  + + D L  ++    E  
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG--EPA 351

Query: 677 EEIEFGSLGNNRSSNTMFGMWRWLSALE 704
               +   G   +++        LS  E
Sbjct: 352 PADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 8e-21
 Identities = 73/409 (17%), Positives = 130/409 (31%), Gaps = 81/409 (19%)

Query: 462 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 521
                 L    +  +  + D L     +  L I +N L+  +P         L  L +S 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPE----LRTLEVSG 90

Query: 522 NHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFR 581
           N L  ++PV    L  L I       L          S +  L +  N L  L P     
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSL-PVLP-- 140

Query: 582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
              L  L++ DN  +  +P      S L  L    N L   +P     LQ+L    +S N
Sbjct: 141 -PGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPMLPSGLQEL---SVSDN 191

Query: 642 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWL 700
           + + S+P   + +             ++L S P L   ++   +  NR           L
Sbjct: 192 QLA-SLPTLPSELYKLW------AYNNRLTSLPALPSGLKELIVSGNR-----------L 233

Query: 701 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 760
           ++L                            + +  L +S N+LT  +P     L    +
Sbjct: 234 TSL------------------------PVLPSELKELMVSGNRLT-SLPMLPSGLL---S 265

Query: 761 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 820
           L++  N L+  +PES  +L    ++++  N L+ +    L  +                 
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA------PGYSGPII 318

Query: 821 PDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEE 869
                 A+    +   + +   WL+  +             G E+  + 
Sbjct: 319 RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADA 367

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.6 bits (235), Expect = 5e-20
 Identities = 82/417 (19%), Positives = 140/417 (33%), Gaps = 84/417 (20%)

Query: 203 RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 262
           R  +   +  CL N     +L++  + L  +LP  +     +  L +  NN      L+S
Sbjct: 27  RAAVVQKMRACLNN--GNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN------LTS 75

Query: 263 L-ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYL 321
           L A   +L  L +S   N L       LP     +L L+  +   ++   L     L  L
Sbjct: 76  LPALPPELRTLEVS--GNQLTS-----LPVLPPGLLELSIFSNPLTHLPALPSG--LCKL 126

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 381
            +  N+L  + P       P L+ L + +N  + +  LP      L  L    N     L
Sbjct: 127 WIFGNQL-TSLPVLP----PGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLT-SL 176

Query: 382 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 441
           P      LQ+L    +S N    ++P    E+ +L   +          S         L
Sbjct: 177 PMLPSG-LQEL---SVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS--------GL 223

Query: 442 ELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 501
           + L +S N            LT L                     + L+ L +S N L+ 
Sbjct: 224 KELIVSGN-----------RLTSLPV-----------------LPSELKELMVSGNRLT- 254

Query: 502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSS 560
            +P         L  LS+ +N L   +P  L +L     +++  N LS   + +   ++S
Sbjct: 255 SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 561 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
               S      +        R  + + L   D      +P +  E +      + G 
Sbjct: 310 APGYSGPIIRFDMAGAS-APRETRALHLAAADWL----VPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 7e-19
 Identities = 68/419 (16%), Positives = 119/419 (28%), Gaps = 74/419 (17%)

Query: 193 LKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 251
             ++  + +  N + S P          L+ L++S NQL  SLP +   L  L       
Sbjct: 60  PAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 311
            +                                   LP+  L  L +    L  S P  
Sbjct: 114 THLPA--------------------------------LPSG-LCKLWIFGNQLT-SLPVL 139

Query: 312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 371
                 L+ L +S N+L  + P        +L  L   NN  + +  LP      L  L 
Sbjct: 140 PP---GLQELSVSDNQL-ASLPALP----SELCKLWAYNNQLTSLPMLPSG----LQELS 187

Query: 372 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 431
           +S N     LP        +L  +    N    ++P     +KEL +            S
Sbjct: 188 VSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPS 241

Query: 432 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491
           +        L+ L +S N             + L  L    N  + ++ + L+  +S   
Sbjct: 242 E--------LKELMVSGNRLTS--LPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 551
           +++  N LS      +   +S     S      +           R   L  ++  +   
Sbjct: 289 VNLEGNPLSERTLQALREITS-APGYSGPIIRFD-MAGASAPRETRALHLAAADWLVPAR 346

Query: 552 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 610
                          + NA    +  +     +    +            Q+ E   LR
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALR 405

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 68/399 (17%), Positives = 118/399 (29%), Gaps = 84/399 (21%)

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
                +L++  +        + +    +  L   +NN +  +         L+ L++S N
Sbjct: 39  NNGNAVLNVGESGLT--TLPDCL-PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557
            L+  +P        EL I S    HL    P   + L +L    I  N+L+        
Sbjct: 92  QLT-SLPVLPPGLL-ELSIFSNPLTHL----PALPSGLCKL---WIFGNQLTSLPVLPPG 142

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 617
           L   + LS+  N L  L P       +L  L   +N  +  +P      S L+ L +  N
Sbjct: 143 L---QELSVSDNQLASL-PALP---SELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN--VLSWRVGSDDVLNGSKLNSPEL 675
            L   +P    +L KL       N+ + S+P   +    L         ++G++L S  L
Sbjct: 192 QLAS-LPTLPSELYKL---WAYNNRLT-SLPALPSGLKELI--------VSGNRLTS--L 236

Query: 676 DEEIEFGSLGNNRSSNTMFGMW-RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 734
                   L     S           S L                               
Sbjct: 237 PVLP--SELKELMVSGNRLTSLPMLPSGLLS----------------------------- 265

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT- 793
             L +  NQLT  +P  +  L +   +NL  N LS    ++   +    S       +  
Sbjct: 266 --LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI---TSAPGYSGPIIR 319

Query: 794 -GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 831
                              +   +  R  +      +  
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 1e-15
 Identities = 71/375 (18%), Positives = 118/375 (31%), Gaps = 66/375 (17%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
             EL++L++S N  T             L +L I      +              LC L 
Sbjct: 80  PPELRTLEVSGNQLTSLP-----VLPPGLLELSIFSNPLTHLPAL-------PSGLCKLW 127

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           +  N++              L E+++  N     L +     + L  L   +NQL  SLP
Sbjct: 128 IFGNQLTSLPV-----LPPGLQELSVSDN----QLASLPALPSELCKLWAYNNQLT-SLP 177

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSL-ANHSKLEGLLLSTRNNTLHVKTENWLPT--S 292
            + S L     L +S N       L+SL    S+L  L     NN L       LP   S
Sbjct: 178 MLPSGLQE---LSVSDNQ------LASLPTLPSELYKLWAY--NNRL-----TSLPALPS 221

Query: 293 QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS 352
            L  L ++   L  S P        LK L +S N+L     T L      L  L +  N 
Sbjct: 222 GLKELIVSGNRLT-SLPVLP---SELKELMVSGNRL-----TSLPMLPSGLLSLSVYRNQ 272

Query: 353 FS----GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPY 408
            +     ++ L          +++  N    +        L+++                
Sbjct: 273 LTRLPESLIHLSS-----ETTVNLEGNPLS-ERTLQ---ALREITSAPGYSGPIIRFDMA 323

Query: 409 SAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
            A   +E   L L+   +     +          +    +N      FS +++       
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA---DAFSLFLDRLSETEN 380

Query: 469 YFENNNFSGKIKDGL 483
           + ++  F  +I   L
Sbjct: 381 FIKDAGFKAQISSWL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.1 bits (237), Expect = 1e-20
 Identities = 74/405 (18%), Positives = 146/405 (36%), Gaps = 48/405 (11%)

Query: 192 ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 251
           +L  L  ++   + I    +T ++ LT L  L  +SN +  +L   +S  T+L YL    
Sbjct: 40  QLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94

Query: 252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 311
           N       ++ L   +KL  L      N L       L  SQ  +L    C  N      
Sbjct: 95  NKLTN-LDVTPL---TKLTYLNCD--TNKLTK-----LDVSQNPLLTYLNCARNTLTEID 143

Query: 312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 371
           + H   L  LD   NK +       +    +L  L    N  +   +L  +++  L+ L+
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLN 197

Query: 372 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 431
              NN   KL  N      +L ++D S N     I  +   + +L+  D S N     L+
Sbjct: 198 CDTNNIT-KLDLNQ---NIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNP----LT 246

Query: 432 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491
           +  V+    L  L     +      +   + T+L +   E      ++   +  +T L +
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKEL--DVTHNTQLYL 301

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 551
           LD     ++  +   +      L  L ++   L     + +++  +L+ L      +   
Sbjct: 302 LDCQAAGIT-ELD--LSQNPK-LVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQD- 353

Query: 552 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 596
            +S   + ++ +    +     +    L  +   +T+ +  +   
Sbjct: 354 FSSVGKIPALNNNFEAEGQTITMPKETL--TNNSLTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 74/473 (15%), Positives = 155/473 (32%), Gaps = 70/473 (14%)

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279
                 ++ ++  +       L +L  LD  +++      ++ +   + L  L+ +  +N
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICT--SN 74

Query: 280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 339
            +          + L +   T                 L YL    NKL  N     +  
Sbjct: 75  NI----------TTLDLSQNTN----------------LTYLACDSNKLT-NLD---VTP 104

Query: 340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK 399
             KL  L    N  +   +L  +++  L +L+ + N    ++  +      +L  +D   
Sbjct: 105 LTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVSH---NTQLTELDCHL 157

Query: 400 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEY 459
           N     +  +     +L+ LD S N     +++  V+    L  L+   NN      +  
Sbjct: 158 NKKITKLDVT--PQTQLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNITKLDLN-- 209

Query: 460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 519
               +L  L   +N  + +I    L  T L   D S N L+  +   +   S  L  L  
Sbjct: 210 -QNIQLTFLDCSSNKLT-EIDVTPL--TQLTYFDCSVNPLT-ELD--VSTLSK-LTTLHC 261

Query: 520 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGEL 579
            +  L     + L +  +L        R    +  + + + +  L  Q   +  L   +L
Sbjct: 262 IQTDLLE---IDLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAGITEL---DL 314

Query: 580 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639
            ++ KLV L L +   +  +   ++ ++ L+ L     H+Q      + ++  L     +
Sbjct: 315 SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEA 369

Query: 640 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNT 692
             +          N       S D+L+           +        N  +  
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWE 422

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 83/440 (18%), Positives = 138/440 (31%), Gaps = 83/440 (18%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
           L  L SLD   +       +     +  L  L  L+   N       S      +L  L 
Sbjct: 41  LATLTSLDCHNS------SITDMTGIEKLTGLTKLICTSNNITTLDLS---QNTNLTYLA 91

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
              N++    TN  +  L  L  +N + N +    ++       L  L+ + N L   + 
Sbjct: 92  CDSNKL----TNLDVTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLT-EID 143

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 295
             +S+ T L  LD   N       ++       L  L  S   N             ++ 
Sbjct: 144 --VSHNTQLTELDCHLNKKITKLDVTPQTQ---LTTLDCS--FN-------------KIT 183

Query: 296 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNSFS 354
            L +++                L  L+   N +     T L L  N +L  L   +N  +
Sbjct: 184 ELDVSQNK-------------LLNRLNCDTNNI-----TKLDLNQNIQLTFLDCSSNKLT 225

Query: 355 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMK 414
              ++       L + D S N    +L  +    L KL  +   +      I  +     
Sbjct: 226 ---EIDVTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL-EIDLT--HNT 275

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN 474
           +L             + +  VT    L LLD           S      +L +LY  N  
Sbjct: 276 QLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGITELDLS---QNPKLVYLYLNNTE 329

Query: 475 FSGKIKDGLLSSTSLQVLDISNNMLS-----GHIPHWMGNFSSELEILSMSKNHLEGNVP 529
            + ++       T L+ L   N  +      G IP    NF +E + ++M K  L  N  
Sbjct: 330 LT-ELDVSHN--TKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN-- 384

Query: 530 VQLNNLERLRILDISENRLS 549
             L       +LD   N ++
Sbjct: 385 -SLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 62/429 (14%), Positives = 131/429 (30%), Gaps = 74/429 (17%)

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
               +               S  ++  L+ LD   +  +     + +     L  L  ++
Sbjct: 20  FASEVAAAFEMQ---ATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTS 73

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 508
           NN      S     T L +L  ++N  +      L   T L  L+   N L+        
Sbjct: 74  NNITTLDLS---QNTNLTYLACDSNKLTNLDVTPL---TKLTYLNCDTNKLTKLDVSQNP 127

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQK 568
                L  L+ ++N L     + +++  +L  LD   N+    +  +   + +  L    
Sbjct: 128 L----LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSF 179

Query: 569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628
           N +  L   +      L  LN   N  + ++   +N++  L FL    N L   I   + 
Sbjct: 180 NKITELDVSQN---KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VT 230

Query: 629 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNR 688
            L +L   D S N  +       + + +         +  +++     + I F + G  +
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ---TDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 689 SSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 748
                                                   ++  ++  LD     +T   
Sbjct: 288 IKELDV----------------------------------THNTQLYLLDCQAAGIT--- 310

Query: 749 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSI 808
             D+ Q   ++ L L+N  L+  +    S+   ++SL      +       +  +  L+ 
Sbjct: 311 ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNN 365

Query: 809 FNVSYNNLS 817
              +     
Sbjct: 366 NFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 61/361 (16%), Positives = 117/361 (32%), Gaps = 43/361 (11%)

Query: 286 ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEV 345
            +W P             +  +          L  LD  ++ +  +     +     L  
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTK 68

Query: 346 LLLKNNSFSGI--LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 403
           L+  +N+ + +   Q        L +L    N     L       L KL Y++   N   
Sbjct: 69  LICTSNNITTLDLSQNTN-----LTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT 119

Query: 404 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT 463
             +  S  +   L+ L+ +RN     L++  V+    L  LD   N        +    T
Sbjct: 120 -KLDVS--QNPLLTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKIT--KLDVTPQT 170

Query: 464 RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523
           +L  L    N  +   +  +  +  L  L+   N ++  +   +      L  L  S N 
Sbjct: 171 QLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQ-LTFLDCSSNK 223

Query: 524 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 583
           L     + +  L +L   D S N L+    S   LS +  L   +  L  +   +L  + 
Sbjct: 224 LTE---IDVTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLLEI---DLTHNT 275

Query: 584 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643
           +L+            +   +  ++ L  L      +   +   L Q  KL  + L+  + 
Sbjct: 276 QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

Query: 644 S 644
           +
Sbjct: 331 T 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 45/266 (16%), Positives = 72/266 (27%), Gaps = 43/266 (16%)

Query: 107 LLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLN 166
            +      P  +L +LD S N  T          +   K L  L    N       +   
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELD-------VSQNKLLNRLNCDTNNITKLDLNQN- 211

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKI---- 222
               L  L    N++    T   +  L  L   +   N +    ++ L  LT L      
Sbjct: 212 --IQLTFLDCSSNKL----TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD 265

Query: 223 ---LDISSN---------QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
              +D++ N                  +++ T L  LD        +     L+ + KL 
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL----DLSQNPKLV 321

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLV 329
            L L+  N  L       L  S    L    C          +     L     +  + +
Sbjct: 322 YLYLN--NTEL-----TELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTI 374

Query: 330 GNFPTWLLRNNPKLEVLLLKNNSFSG 355
              P   L NN     +        G
Sbjct: 375 -TMPKETLTNNSLTIAVSPDLLDQFG 399

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 52/290 (17%), Positives = 100/290 (34%), Gaps = 51/290 (17%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
           HL  L L +NK+             KL+ L +  N    ++++P      L  L I  N 
Sbjct: 79  HLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH---LVEIPPNLPSSLVELRIHDNR 134

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN-YFSGGLSQSVV 435
            R                  + K  F G        ++ ++ +++  N   + G      
Sbjct: 135 IR-----------------KVPKGVFSG--------LRNMNCIEMGGNPLENSGFEPGAF 169

Query: 436 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 494
            G   L  L +S          + +    L  L+ ++N     I+   L   + L  L +
Sbjct: 170 DGL-KLNYLRISEAKL--TGIPKDL-PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 495 SNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS--- 549
            +N +   I +  G+ S    L  L +  N L   VP  L +L+ L+++ +  N ++   
Sbjct: 225 GHNQIR-MIEN--GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 550 ----GPIASSLNLSSVEHLSLQKNALNGL-IPGELFRS-CKLVTLNLRDN 593
                P+   +  +    +SL  N +    +    FR     + +   + 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 59/366 (16%), Positives = 104/366 (28%), Gaps = 100/366 (27%)

Query: 194 KNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN 253
            +   ++L+ N I        K L  L  L + +N+++       S L  L+ L +S N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 254 FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL 313
                 L  +  +                      LP+S                     
Sbjct: 114 ------LVEIPPN----------------------LPSS--------------------- 124

Query: 314 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 373
               L  L +  N++    P  +      +  + +  N               L +    
Sbjct: 125 ----LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP--------------LENSGFE 165

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
              F G           KL Y+ IS+      IP      + L+ L L  N     +   
Sbjct: 166 PGAFDG----------LKLNYLRISEAKLT-GIP--KDLPETLNELHLDHNKIQ-AIELE 211

Query: 434 VVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL 489
            +     L  L L +N       G        L  LR L+ +NN  S ++  GL     L
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSL----SFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266

Query: 490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL--------NNLERLRIL 541
           QV+ +  N ++    +        ++    +   L  N PV            +     +
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAI 325

Query: 542 DISENR 547
                +
Sbjct: 326 QFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 59/361 (16%), Positives = 111/361 (30%), Gaps = 88/361 (24%)

Query: 317 HLKYLDLSHNKLV---GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 373
           HL+ +  S   L                   +L L+NN  S + +        L+ L + 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDT-------TLLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
            N                     I +  F          +++L  L +S+N+        
Sbjct: 87  NNKIS-----------------KIHEKAFSP--------LRKLQKLYISKNHLV-----E 116

Query: 434 VVTGCF-SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNF-SGKIKDGLLSST 487
           +      SL  L + +N      +G F      L  +  +    N   +   + G     
Sbjct: 117 IPPNLPSSLVELRIHDNRIRKVPKGVF----SGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDISEN 546
            L  L IS   L+  IP       + L  L +  N ++  + ++ L    +L  L +  N
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPET-LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

Query: 547 RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 606
           ++                 ++  +L+ L          L  L+L +N  S R+P  + + 
Sbjct: 228 QIR---------------MIENGSLSFLP--------TLRELHLDNNKLS-RVPAGLPDL 263

Query: 607 SNLRFLLLGGNHLQGPIPDQLCQLQ------KLAMMDLSRNKFS-GSIPPC-FANVLSWR 658
             L+ + L  N++     +  C +           + L  N      + P  F  V    
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 659 V 659
            
Sbjct: 324 A 324

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 61/316 (19%), Positives = 101/316 (31%), Gaps = 51/316 (16%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTLI 175
              LDL  N  +   K    D  + L+ L  LVL +N      +  FS    L  L  L 
Sbjct: 56  TTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKIHEKAFS---PLRKLQKLY 108

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQL-NGSL 234
           +  N +     N       +L E+ +  N I          L  +  +++  N L N   
Sbjct: 109 ISKNHLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 235 PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQL 294
                +   L YL +S     G+ P         L  L L   N    ++ E+ L  S+L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGI-PKDLPET---LNELHLD-HNKIQAIELEDLLRYSKL 219

Query: 295 IVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 354
             LGL    +       L     L+ L L +NKL    P   L +   L+V+ L  N+ +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNIT 277

Query: 355 GI------LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPY 408
            +            K  + + + +  N                + Y ++    F      
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNN---------------PVPYWEVQPATFRC---- 318

Query: 409 SAGEMKELSLLDLSRN 424
               + +   +     
Sbjct: 319 ----VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 65/346 (18%), Positives = 120/346 (34%), Gaps = 73/346 (21%)

Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
            L+V+  S+  L   +P      S +  +L +  N +          L+ L  L +  N+
Sbjct: 34  HLRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 548 LSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NE 605
           +S     +   L  ++ L + KN L   IP  L  S  LV L + DN    ++P  + + 
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIR-KVPKGVFSG 145

Query: 606 HSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW------- 657
             N+  + +GGN L+            KL  + +S  K +  IP      L+        
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNK 204

Query: 658 --RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 715
              +  +D+L  SKL    L        LG+N+      G   +L  L +          
Sbjct: 205 IQAIELEDLLRYSKLY--RLG-------LGHNQIRMIENGSLSFLPTLRE---------- 245

Query: 716 EFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES 775
                                L L  N+L+  +P+ +  L+ +  + L  N+++      
Sbjct: 246 ---------------------LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 776 FSNLKM------IESLDISYNKLT-GQIPPQ----LTALNFLSIFN 810
           F  +           + +  N +   ++ P     +T    +   N
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
            T LDL  N ++     D   LQ + AL L NN +S    ++FS L+ ++ L IS N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 794 GQIPPQL-TALNFLSIFNVSYNNLS 817
            +IPP L ++L  L I     N + 
Sbjct: 116 -EIPPNLPSSLVELRI---HDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI 787
             +  +  L L  N+++ +I       L+ +  L +S N L    P   S+L     L I
Sbjct: 75  KGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRI 130

Query: 788 SYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFA 827
             N++  ++P    + L  ++   +  N L     + G F 
Sbjct: 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           S + ++  L +S N L  EIP       +++ L + +N +       FS L+ +  +++ 
Sbjct: 99  SPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155

Query: 789 YNKLT-GQIPPQLTALNFLSIFNVSYNNLS 817
            N L      P       L+   +S   L+
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 63/335 (18%), Positives = 116/335 (34%), Gaps = 45/335 (13%)

Query: 317 HLKYLDLSHNKLV---GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 373
           HL+ +  S   L     + P           +L L+NN  + I          LH L + 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDT-------ALLDLQNNKITEIKDGDFKNLKNLHTLILI 84

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
            N    K+       L KL  + +SKN  +  +P      K L  L +  N  +  + +S
Sbjct: 85  NNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELP--EKMPKTLQELRVHENEITK-VRKS 139

Query: 434 VVTGCFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 491
           V  G   + +++L  N  +           + +L ++   + N +  I  GL  S  L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTE 196

Query: 492 LDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS 549
           L +  N ++  +     +    + L  L +S N +       L N   LR L ++ N+L 
Sbjct: 197 LHLDGNKIT-KVDA--ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 609
                  +   ++ + L  N ++                 +  N F    P    + ++ 
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNIS----------------AIGSNDFCP--PGYNTKKASY 295

Query: 610 RFLLLGGNHLQ-GPIPDQLCQ-LQKLAMMDLSRNK 642
             + L  N +Q   I     + +   A + L   K
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 66/341 (19%), Positives = 112/341 (32%), Gaps = 73/341 (21%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
               +LD+ +N++         NL +L  L L +N    + P  + A   KLE L LS  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLS-- 108

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
            N L    E  +P +                         L+ L +  N++       + 
Sbjct: 109 KNQLKELPEK-MPKT-------------------------LQELRVHENEIT-KVRKSVF 141

Query: 338 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 397
               ++ V+ L  N               L    I    F+G         ++KL Y+ I
Sbjct: 142 NGLNQMIVVELGTNP--------------LKSSGIENGAFQG---------MKKLSYIRI 178

Query: 398 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EG 453
           +       IP        L+ L L  N  +  +  + + G  +L  L LS N+      G
Sbjct: 179 ADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 454 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-----GHIPHWMG 508
                  N   LR L+  NN    K+  GL     +QV+ + NN +S        P    
Sbjct: 235 SL----ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 509 NFSSELEILSMSKNHLEGNV--PVQLNNLERLRILDISENR 547
              +    +S+  N ++     P     +     + +   +
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 62/319 (19%), Positives = 111/319 (34%), Gaps = 52/319 (16%)

Query: 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCT 173
            +   LDL  N  T           ++LK L  L+L +N         F+    L  L  
Sbjct: 52  PDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFA---PLVKLER 104

Query: 174 LILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGS 233
           L L  N+++           K L E+ +  N I     +    L ++ ++++ +N L  S
Sbjct: 105 LYLSKNQLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 234 L--PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 291
                    +  L Y+ ++  N   + P     +   L  L L   N    V   +    
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTI-PQGLPPS---LTELHLD-GNKITKVDAASLKGL 215

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 351
           + L  LGL+  +++      L +  HL+ L L++NKLV   P   L ++  ++V+ L NN
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNN 273

Query: 352 SFSGI------LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 405
           + S I            K      + +  N                + Y +I  + F   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSN---------------PVQYWEIQPSTFRC- 317

Query: 406 IPYSAGEMKELSLLDLSRN 424
                  +   + + L   
Sbjct: 318 -------VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 48/244 (19%), Positives = 93/244 (38%), Gaps = 23/244 (9%)

Query: 414 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLRHLYF 470
            + +LLDL  N  +  +         +L  L L NN         F+    L +L  LY 
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYL 107

Query: 471 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHL-EGN 527
             N    ++ + +  +  LQ L +  N ++  +      F+  +++ ++ +  N L    
Sbjct: 108 SKNQLK-ELPEKMPKT--LQELRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSG 161

Query: 528 VPVQ-LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KL 585
           +       +++L  + I++  ++  I   L   S+  L L  N +   +     +    L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITT-IPQGL-PPSLTELHLDGNKITK-VDAASLKGLNNL 218

Query: 586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 645
             L L  N+ S      +    +LR L L  N L   +P  L   + + ++ L  N  S 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS- 276

Query: 646 SIPP 649
           +I  
Sbjct: 277 AIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 51/218 (23%), Positives = 84/218 (38%), Gaps = 13/218 (5%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNM 498
              LLDL NN        ++ NL  L  L   NN  S KI  G  +    L+ L +S N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 499 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL- 556
           L   +P       + L+ L + +N +        N L ++ ++++  N L S  I +   
Sbjct: 112 LK-ELP--EKMPKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 557 -NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615
             +  + ++ +    +   IP  L  S  L  L+L  N  +      +   +NL  L L 
Sbjct: 168 QGMKKLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 653
            N +       L     L  + L+ NK    +P   A+
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 52/317 (16%), Positives = 92/317 (29%), Gaps = 51/317 (16%)

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
           P    L L  N+I   +       LKNL  + L  N I          L +L+ L +S N
Sbjct: 52  PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW 288
           QL   LP  +    +L+ L +  N        S     +++  + L    N L     + 
Sbjct: 111 QLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELG--TNPL---KSSG 161

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
           +                            L Y+ ++   +    P  L  +   L  L L
Sbjct: 162 IE------------------NGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHL 199

Query: 349 KNNSFSGILQLPKAKHDF-----LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE 403
             N  + +               L  L +S N+    + +        L  + ++ N   
Sbjct: 200 DGNKITKV-----DAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV 253

Query: 404 GNIPYSAGEMKELSLLDLSRNYFS-----GGLSQSVVTGCFSLELLDLSNNNFEGQFFSE 458
             +P    + K + ++ L  N  S             T   S   + L +N  +      
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 459 YM--NLTRLRHLYFENN 473
                +     +   N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 60/307 (19%), Positives = 98/307 (31%), Gaps = 35/307 (11%)

Query: 147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI 206
             +L L +N   +        L +L TLIL  N+I    +      L  L  + L +N +
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 207 GSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF-EGMFPLSSLAN 265
                   K L     L +  N++     SV + L  +  ++L  N          +   
Sbjct: 113 KELPEKMPKTLQE---LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 266 HSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH 325
             KL  + ++   N   +     LP S L  L L    +       L    +L  L LS 
Sbjct: 170 MKKLSYIRIA-DTNITTIPQG--LPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 326 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPH 383
           N +        L N P L  L L NN    ++++P     H ++  + +  NN       
Sbjct: 226 NSI-SAVDNGSLANTPHLRELHLNNNK---LVKVPGGLADHKYIQVVYLHNNNIS----- 276

Query: 384 NMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS-GGLSQSVVTGCFSLE 442
                        I  N F      +  +    S + L  N      +  S     +   
Sbjct: 277 ------------AIGSNDFCPPGYNT--KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 443 LLDLSNN 449
            + L N 
Sbjct: 323 AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 60/348 (17%), Positives = 122/348 (35%), Gaps = 76/348 (21%)

Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
            L+V+  S+  L   +P    +   +  +L +  N +         NL+ L  L +  N+
Sbjct: 32  HLRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 548 LSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NE 605
           +S     +   L  +E L L KN L   +P ++ ++  L  L + +N  + ++   + N 
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEIT-KVRKSVFNG 143

Query: 606 HSNLRFLLLGGNHLQ-GPIPDQLCQ-LQKLAMMDLSRNKFSGSIPP-CFAN----VLSW- 657
            + +  + LG N L+   I +   Q ++KL+ + ++    + +IP     +     L   
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN 202

Query: 658 --RVGSDDVLNG-SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE 714
                    L G + L   +L        L  N  S    G       L +         
Sbjct: 203 KITKVDAASLKGLNNLA--KLG-------LSFNSISAVDNGSLANTPHLRE--------- 244

Query: 715 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 774
                                 L L+ N+L  ++P  +   + I  + L NN++S +I  
Sbjct: 245 ----------------------LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS 280

Query: 775 S-------FSNLKMIESLDISYNKLT-GQIPP----QLTALNFLSIFN 810
           +        +       + +  N +   +I P     +     + + N
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 24/142 (16%), Positives = 38/142 (26%), Gaps = 26/142 (18%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLC 172
              L  L  L LS N  +         SL +   L+ L L +N     +   L     + 
Sbjct: 212 LKGLNNLAKLGLSFNSIS----AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
            + LH N I                   +  N    P             + + SN +  
Sbjct: 267 VVYLHNNNIS-----------------AIGSNDFCPPGY--NTKKASYSGVSLFSNPVQY 307

Query: 233 SL--PSVISNLTSLEYLDLSHN 252
               PS    +     + L + 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 737 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795
           L L  N++T ++ +     L  +  L LS NS+S     S +N   +  L ++ NKL  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 796 IPPQLTALNFLSIFNVSYNNLS 817
           +P  L    ++ +  +  NN+S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
              LDL  N++T     D   L+ +  L L NN +S   P +F+ L  +E L +S N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 794 GQIPPQL-TALNFLSIFNVSYNNLS 817
            ++P ++   L  L +     N ++
Sbjct: 114 -ELPEKMPKTLQELRV---HENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           + + ++  L LS NQL  E+P      + +  L +  N ++      F+ L  +  +++ 
Sbjct: 97  APLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153

Query: 789 YNKLT-GQIPPQ-LTALNFLSIFNVSYNNLS 817
            N L    I       +  LS   ++  N++
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPESFSNLKMIESLDI 787
            N+  +  L L  N+++ +I       L  +  L LS N L     +    L   + L +
Sbjct: 73  KNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRV 128

Query: 788 SYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPDKGQFA 827
             N++T ++       LN + +  +  N L     + G F 
Sbjct: 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.8 bits (220), Expect = 3e-19
 Identities = 50/254 (19%), Positives = 88/254 (34%), Gaps = 20/254 (7%)

Query: 312 LLHQYHLKYLDLSHNKLVGNFPTWLLR--NNPKLEVLLLKNNSFSGILQLPKAKHDF--- 366
           ++    LK L +   ++        LR      L+ L L+N   +G    P  +      
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 367 --LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 424
             L+  ++S       L      +   L  + I++                LS LDLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 425 YFSG--GLSQSVVTGCF-SLELLDLSNNNFE---GQFFSEYMNLTRLRHLYFENNNFSGK 478
              G  GL  ++    F +L++L L N   E   G   +      +L+ L   +N+    
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 479 IKDGLLS-STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 537
                    + L  L++S   L   +P       ++L +L +S N L+ N       L +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLK-QVP---KGLPAKLSVLDLSYNRLDRNPSPD--ELPQ 297

Query: 538 LRILDISENRLSGP 551
           +  L +  N     
Sbjct: 298 VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 5e-19
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 20/249 (8%)

Query: 414 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS---EYMNLTRLRHLYF 470
           + L  L    +  +     + +    SL+ L +       +        + ++ L+ L  
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 471 ENNNFSGKI--KDGLLSSTSLQVLDISNNMLSG---HIPHWMGNFSSELEILSMSKNHLE 525
           EN   +G         +   L +L++ N   +     +          L++LS+++ H  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 526 GNVPVQLNNLERLRILDISENRLSGPI-----ASSLNLSSVEHLSLQKNALNGL---IPG 577
                Q+     L  LD+S+N   G          L   +++ L+L+   +         
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 578 ELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMM 636
                 +L  L+L  N+          +  S L  L L    L+        +L  L   
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL--- 279

Query: 637 DLSRNKFSG 645
           DLS N+   
Sbjct: 280 DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 416 LSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFEG--QFFSEYMNL--TRLRHLYF 470
           L  L L     +G     ++      L +L+L N ++     + +E        L+ L  
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 471 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW---MGNFSSELEILSMSKNHLE-- 525
              +      + +    +L  LD+S+N   G               L++L++    +E  
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 526 -GNVPVQLNNLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALNGLIPGELFRS 582
            G          +L+ LD+S N L     +      S +  L+L    L  + P  L   
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLPA- 274

Query: 583 CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 622
            KL  L+L  N    R P   +E   +  L L GN     
Sbjct: 275 -KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 52/287 (18%), Positives = 78/287 (27%), Gaps = 18/287 (6%)

Query: 228 NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS--TRNNTLHVKT 285
           N L  +   +     SLEYL    +    +   + +     L+ L +      + +    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 286 ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH--LKYLDLSHNKLVGNF---PTWLLRNN 340
              L  S L  L L    + G+ P  LL      L  L+L +                  
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI------LQKLMY 394
           P L+VL +                  L  LD+S N   G+      +       LQ L  
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
            +       G     A    +L  LDLS N                L  L+LS    +  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 455 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG 501
                    +L  L    N          L    +  L +  N    
Sbjct: 269 PKG---LPAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 58/325 (17%), Positives = 95/325 (29%), Gaps = 62/325 (19%)

Query: 505 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS----LNLSS 560
              G   S   +L       +      +     L+ L +   R+   I       L +S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 561 VEHLSLQKNALNGLIPGELFRSC--KLVTLNLRDNTFSGRIPH----QINEHSNLRFLLL 614
           ++ L+L+   + G  P  L  +    L  LNLR+ +++ R       Q      L+ L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 674
              H      +Q+     L+ +DLS N   G      A                    P 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK--------------FPT 202

Query: 675 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 734
           L + +   + G    S     +      L+                              
Sbjct: 203 L-QVLALRNAGMETPSGVCSALAAARVQLQG----------------------------- 232

Query: 735 TGLDLSCNQLTGEIPSDIGQ-LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
             LDLS N L     +        + +LNLS   L        + L     LD+SYN+L 
Sbjct: 233 --LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD 287

Query: 794 GQIPPQLTALNFLSIFNVSYNNLSG 818
               P    L  +   ++  N    
Sbjct: 288 R--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 51/252 (20%), Positives = 80/252 (31%), Gaps = 20/252 (7%)

Query: 90  LSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI 149
           LSLK  T          L        +  LQ L L     T  +         +   L I
Sbjct: 68  LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP--LLEATGPDLNI 125

Query: 150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE----LKNLFEMNLERNF 205
           L L +  +     ++L  L       L    I  + +    CE       L  ++L  N 
Sbjct: 126 LNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 206 I----GSPLITCLKNLTRLKILDISSNQLN---GSLPSVISNLTSLEYLDLSHNNFEGMF 258
                G     C      L++L + +  +    G   ++ +    L+ LDLSHN+     
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 318
              S    S+L  L LS     L    +      +L VL L+   L+ +          +
Sbjct: 245 GAPSCDWPSQLNSLNLS--FTGLKQVPKGLPA--KLSVLDLSYNRLDRN--PSPDELPQV 298

Query: 319 KYLDLSHNKLVG 330
             L L  N  + 
Sbjct: 299 GNLSLKGNPFLD 310

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 52/237 (21%), Positives = 82/237 (34%), Gaps = 16/237 (6%)

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
            +   L L  N I+  Q +     L +L  + L RN I    +     L  L  L++  N
Sbjct: 75  SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW 288
            L          L+ L  L L +N  E   P  +      L  L L       ++    +
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
                L  L L  CN+       L     L+ L++S N                L+ L +
Sbjct: 193 EGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWV 249

Query: 349 KNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
            N+  S I       L       L  L+++ NN    LPH++   L+ L+ + +  N
Sbjct: 250 MNSQVSLIERNAFDGLAS-----LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 12/232 (5%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFE 471
               L+L  N     +          LE+L L  N+    E   F+    L  L  L   
Sbjct: 76  NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFN---GLASLNTLELF 131

Query: 472 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLEGNVP 529
           +N  +  I  G     + L+ L + NN +   IP +  N    L  L + +   LE    
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 530 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589
                L  L+ L++    +   + +   L  +E L +  N    + PG       L  L 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
           + ++  S    +  +  ++L  L L  N+L     D    L+ L  + L  N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 60/244 (24%), Positives = 88/244 (36%), Gaps = 23/244 (9%)

Query: 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCT 173
              + L+L  N           D+ R L  L++L LG N     +   F+    L SL T
Sbjct: 75  SNTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSIRQIEVGAFNG---LASLNT 127

Query: 174 LILHWNRIEG--SQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISS-NQL 230
           L L  N +    S   +    L  L E+ L  N I S        +  L  LD+    +L
Sbjct: 128 LELFDNWLTVIPSGAFEY---LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 231 NGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWL- 289
                     L +L+YL+L   N + M  L+ L     LE L +S   N           
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG---LEELEMS--GNHFPEIRPGSFH 239

Query: 290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
             S L  L +    ++    +       L  L+L+HN L  + P  L      L  L L 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

Query: 350 NNSF 353
           +N +
Sbjct: 299 HNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 57/284 (20%), Positives = 92/284 (32%), Gaps = 45/284 (15%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
               +  +   L    P  +         L L  N+   I          L  L +  N+
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436
            R                  I    F G        +  L+ L+L  N+ +  +      
Sbjct: 111 IR-----------------QIEVGAFNG--------LASLNTLELFDNWLTV-IPSGAFE 144

Query: 437 GCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQV 491
               L  L L NN         F      +  L  L          I +G      +L+ 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAF----NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 550
           L++    +   +P+        LE L MS NH     P   + L  L+ L +  +++S  
Sbjct: 201 LNLGMCNIK-DMPNLTPL--VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 551 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDN 593
              +   L+S+  L+L  N L+ L P +LF   + LV L+L  N
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 55/258 (21%), Positives = 87/258 (33%), Gaps = 42/258 (16%)

Query: 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 259
           NL  N I        ++L  L++L +  N +        + L SL  L+L  N    + P
Sbjct: 81  NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIP 139

Query: 260 LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ-YHL 318
             +    SKL  L L   N    + +  +     L+ L L +        +      ++L
Sbjct: 140 SGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 319 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-----LHHLDIS 373
           KYL+L    +  + P   L     LE L +  N F  I         F     L  L + 
Sbjct: 199 KYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEI-----RPGSFHGLSSLKKLWVM 250

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 433
            +                     I +N F+G        +  L  L+L+ N  S  L   
Sbjct: 251 NSQVS-----------------LIERNAFDG--------LASLVELNLAHNNLS-SLPHD 284

Query: 434 VVTGCFSLELLDLSNNNF 451
           + T    L  L L +N +
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 53/290 (18%), Positives = 87/290 (30%), Gaps = 70/290 (24%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
           +  + L++  N +         +L  LE L L  N+      +  +   +   GL     
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGA-FNGL----- 122

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
                                                   L  L+L  N L    P+   
Sbjct: 123 --------------------------------------ASLNTLELFDNWLT-VIPSGAF 143

Query: 338 RNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
               KL  L L+NN    I      ++P      L  LD+        +       L  L
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPS-----LMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-- 450
            Y+++     + ++P     +  L  L++S N+F   +      G  SL+ L + N+   
Sbjct: 199 KYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 451 -FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
             E   F     L  L  L   +NN S    D       L  L + +N  
Sbjct: 256 LIERNAFD---GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 47/216 (21%), Positives = 75/216 (34%), Gaps = 38/216 (17%)

Query: 440 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 494
           +   L+L  NN        F     +L  L  L    N+   +I+ G  +   SL  L++
Sbjct: 76  NTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130

Query: 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE-NRLSGPIA 553
            +N L+  IP     + S+L  L +  N +E       N +  L  LD+ E  +L     
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE---- 185

Query: 554 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 613
                       + + A  GL          L  LNL        +P+ +     L  L 
Sbjct: 186 -----------YISEGAFEGLF--------NLKYLNLGMCNIK-DMPN-LTPLVGLEELE 224

Query: 614 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
           + GNH     P     L  L  + +  ++ S  I  
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 39/175 (22%), Positives = 59/175 (33%), Gaps = 17/175 (9%)

Query: 112 LFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN----YFDDSIFSYLNT 167
            F  L +L+ L L  N            +   +  L  L LG      Y  +  F  L  
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPS----YAFNRVPSLMRLDLGELKKLEYISEGAFEGL-- 195

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISS 227
             +L  L L    I+          L  L E+ +  N            L+ LK L + +
Sbjct: 196 -FNLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 228 NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
           +Q++    +    L SL  L+L+HNN     P         L  L L   +N  +
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH--HNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 21/176 (11%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYF---DDSIFSYLNTLP 169
           F+ L  L +L+L  N  T    + +  +   L +L+ L L +N         F+    +P
Sbjct: 119 FNGLASLNTLELFDNWLTV---IPS-GAFEYLSKLRELWLRNNPIESIPSYAFN---RVP 171

Query: 170 SLCTLIL-HWNRIEGSQTN--QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
           SL  L L    ++E       +G   L NL  +NL    I    +  L  L  L+ L++S
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEG---LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMS 226

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
            N      P     L+SL+ L + ++    +   ++    + L  L L+  +N L 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLA--HNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 3e-13
 Identities = 58/309 (18%), Positives = 106/309 (34%), Gaps = 65/309 (21%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           S     +  +   LS  +P       S    L++ +N+++        +L  L +L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 546 NRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 604
           N +    + +   L+S+  L L  N L  +  G      KL  L LR+N     IP    
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 605 EH-SNLRFLLLGG-NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD 662
               +L  L LG    L+         L  L  ++L        +P     ++       
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE---- 221

Query: 663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 722
                      EL+       +  N       G +  LS+L+K                 
Sbjct: 222 -----------ELE-------MSGNHFPEIRPGSFHGLSSLKK----------------- 246

Query: 723 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKM 781
                         L +  +Q++    +    L +++ LNL++N+LS S+P   F+ L+ 
Sbjct: 247 --------------LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRY 291

Query: 782 IESLDISYN 790
           +  L + +N
Sbjct: 292 LVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 52/271 (19%), Positives = 90/271 (33%), Gaps = 47/271 (17%)

Query: 554 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605
           +   LS V         +L+L +N +  +          L  L L  N+   +I      
Sbjct: 62  TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN 120

Query: 606 H-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDD 663
             ++L  L L  N L          L KL  + L  N    SIP   F  V         
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRV--------- 170

Query: 664 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY 723
                 L   +L E          +      G +  L  L+          +   M N  
Sbjct: 171 ----PSLMRLDLGE--------LKKLEYISEGAFEGLFNLK---------YLNLGMCNIK 209

Query: 724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 783
           ++ N + +  +  L++S N      P     L ++  L + N+ +S     +F  L  + 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 784 SLDISYNKLTGQIPP----QLTALNFLSIFN 810
            L++++N L+  +P      L  L  L + +
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 63/237 (26%)

Query: 584 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643
           +   +       S  +P  I   SN R+L L  N++Q    D    L  L ++ L RN  
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 644 SGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 702
              I    F  +             + LN   L+       L +N            L+ 
Sbjct: 112 R-QIEVGAFNGL-------------ASLN--TLE-------LFDNW-----------LTV 137

Query: 703 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILAL 761
           +   A         F             ++++  L L  N +   IPS    ++ +++ L
Sbjct: 138 IPSGA---------F-----------EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL 176

Query: 762 NLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           +L     L      +F  L  ++ L++    +     P LT L  L    +S N+  
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 56/237 (23%), Positives = 87/237 (36%), Gaps = 16/237 (6%)

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
            +   L LH N+I+  + N     L++L  + L RN I +  I     L  L  L++  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW 288
           +L          L+ L+ L L +N  E   P  +      L  L L       ++    +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
              S L  L L  CNL    P+       L  LDLS N L         +    L+ L +
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIPNL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWM 238

Query: 349 KNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
             +    I       L       L  ++++ NN    LPH++   L  L  + +  N
Sbjct: 239 IQSQIQVIERNAFDNLQS-----LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 57/242 (23%), Positives = 92/242 (38%), Gaps = 19/242 (7%)

Query: 117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCT 173
              + L+L  N           +S + L+ L+IL L  N     +   F+ L    +L T
Sbjct: 64  TNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAFNGL---ANLNT 116

Query: 174 LILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISS-NQLNG 232
           L L  NR+  +  N     L  L E+ L  N I S        +  L+ LD+    +L+ 
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 233 SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT- 291
                   L++L YL+L+  N      + +L    KL+ L LS   N L           
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLS--GNHLSAIRPGSFQGL 230

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 351
             L  L + +  +     +   +   L  ++L+HN L    P  L      LE + L +N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

Query: 352 SF 353
            +
Sbjct: 290 PW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 54/253 (21%), Positives = 89/253 (35%), Gaps = 32/253 (12%)

Query: 200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 259
           NL  N I    +   K+L  L+IL +S N +        + L +L  L+L  N      P
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIP 128

Query: 260 LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ-YHL 318
             +    SKL+ L L   N    + +  +     L  L L +        +       +L
Sbjct: 129 NGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 319 KYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 378
           +YL+L+   L    P   L    KL+ L L  N  S I          L  L +  +  +
Sbjct: 188 RYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 379 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC 438
                             I +N F+         ++ L  ++L+ N  +  L   + T  
Sbjct: 245 -----------------VIERNAFDN--------LQSLVEINLAHNNLT-LLPHDLFTPL 278

Query: 439 FSLELLDLSNNNF 451
             LE + L +N +
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 18/235 (7%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFE 471
              LL+L  N     +  +       LE+L LS N+    E   F+    L  L  L   
Sbjct: 65  NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFN---GLANLNTLELF 120

Query: 472 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSK-NHLEGN 527
           +N  +  I +G     + L+ L + NN +   IP     F+    L  L + +   L   
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKRLS-Y 175

Query: 528 VPVQ-LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
           +       L  LR L+++   L   I +   L  ++ L L  N L+ + PG       L 
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
            L +  +       +  +   +L  + L  N+L     D    L  L  + L  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 57/284 (20%), Positives = 94/284 (33%), Gaps = 45/284 (15%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
               +      L    P  +   +    +L L  N    I          L  L +S N+
Sbjct: 44  QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436
            R                  I    F G        +  L+ L+L  N  +  +      
Sbjct: 100 IR-----------------TIEIGAFNG--------LANLNTLELFDNRLTT-IPNGAFV 133

Query: 437 GCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQV 491
               L+ L L NN         F      +  LR L          I +G     ++L+ 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAF----NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 550
           L+++   L   IP+       +L+ L +S NHL    P     L  L+ L + ++++   
Sbjct: 190 LNLAMCNLR-EIPNLTPL--IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 551 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDN 593
              +  NL S+  ++L  N L  L P +LF     L  ++L  N
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 72/291 (24%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
           T  ++L++  NQ+     +   +L  LE L LS N+      + ++   +   GL     
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGA-FNGL----- 111

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
                                                  +L  L+L  N+L    P    
Sbjct: 112 --------------------------------------ANLNTLELFDNRLT-TIPNGAF 132

Query: 338 RNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
               KL+ L L+NN    I      ++P      L  LD+        +       L  L
Sbjct: 133 VYLSKLKELWLRNNPIESIPSYAFNRIPS-----LRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-- 450
            Y++++       IP     + +L  LDLS N+ S  +      G   L+ L +  +   
Sbjct: 188 RYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 451 -FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNML 499
             E   F    NL  L  +   +NN +  +   L +    L+ + + +N  
Sbjct: 245 VIERNAFD---NLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 38/216 (17%)

Query: 440 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 494
           +  LL+L  N         F     +L  L  L    N+    I+ G  +   +L  L++
Sbjct: 65  NTRLLNLHENQIQIIKVNSF----KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE-NRLSGPIA 553
            +N L+  IP+    + S+L+ L +  N +E       N +  LR LD+ E  RLS    
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS---- 174

Query: 554 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 613
                       + + A  GL          L  LNL        IP+ +     L  L 
Sbjct: 175 -----------YISEGAFEGLS--------NLRYLNLAMCNLR-EIPN-LTPLIKLDELD 213

Query: 614 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
           L GNHL    P     L  L  + + +++    I  
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 7e-14
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN----YFDDSIFSYLNTL 168
           F  L +L+ L L  N            +   +  L+ L LG      Y  +  F  L   
Sbjct: 132 FVYLSKLKELWLRNNPIES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL--- 184

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
            +L  L L    +           L  L E++L  N + +      + L  L+ L +  +
Sbjct: 185 SNLRYLNLAMCNLREIPNLTP---LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH 282
           Q+     +   NL SL  ++L+HNN   + P         LE + L   +N  +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH--HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 8e-13
 Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 65/309 (21%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
           S     +      L   +P      S+   +L++ +N ++        +L  L IL +S 
Sbjct: 42  SNQFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 546 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI- 603
           N +      +   L+++  L L  N L  +  G      KL  L LR+N     IP    
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 604 NEHSNLRFLLLGG-NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD 662
           N   +LR L LG    L          L  L  ++L+       IP     +        
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPL-------- 206

Query: 663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 722
                 KL+  ELD       L  N  S    G ++ L  L+K                 
Sbjct: 207 -----IKLD--ELD-------LSGNHLSAIRPGSFQGLMHLQK----------------- 235

Query: 723 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKM 781
                         L +  +Q+     +    LQ+++ +NL++N+L+  +P   F+ L  
Sbjct: 236 --------------LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHH 280

Query: 782 IESLDISYN 790
           +E + + +N
Sbjct: 281 LERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 59/270 (21%), Positives = 90/270 (33%), Gaps = 45/270 (16%)

Query: 554 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 605
              NL  V          L+L +N +  +          L  L L  N          N 
Sbjct: 51  VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDV 664
            +NL  L L  N L          L KL  + L  N    SIP   F  +          
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI---------- 159

Query: 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724
                L   +L E          R S    G +  LS L           +  AM N  E
Sbjct: 160 ---PSLRRLDLGE--------LKRLSYISEGAFEGLSNLR---------YLNLAMCNLRE 199

Query: 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 784
           I N + + ++  LDLS N L+   P     L  +  L +  + +      +F NL+ +  
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 785 LDISYNKLTGQIPP----QLTALNFLSIFN 810
           +++++N LT  +P      L  L  + + +
Sbjct: 260 INLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 55/264 (20%), Positives = 97/264 (36%), Gaps = 43/264 (16%)

Query: 559 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 618
           +    +   +  L   +P  +  +     LNL +N       +      +L  L L  NH
Sbjct: 43  NQFSKVICVRKNLRE-VPDGISTN--TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 619 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDE 677
           ++         L  L  ++L  N+ + +IP   F  +             SKL   EL  
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYL-------------SKLK--ELW- 142

Query: 678 EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR-YEIYNGS--NVNRV 734
                 L NN   +     +  + +L           ++     R   I  G+   ++ +
Sbjct: 143 ------LRNNPIESIPSYAFNRIPSLR---------RLDLGELKRLSYISEGAFEGLSNL 187

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 794
             L+L+   L  EIP+    L  +  L+LS N LS   P SF  L  ++ L +  +++  
Sbjct: 188 RYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244

Query: 795 QIPPQ-LTALNFLSIFNVSYNNLS 817
            I       L  L   N+++NNL+
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT 268

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 5e-18
 Identities = 53/272 (19%), Positives = 89/272 (32%), Gaps = 23/272 (8%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
               L+   +    ++ S       LQ+L L+ N      +    DS  SL  L+ L L 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE----DSFSSLGSLEHLDLS 108

Query: 154 HN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF-IGSP 209
           +N       S F     L SL  L L  N  +          L  L  + +         
Sbjct: 109 YNYLSNLSSSWFKP---LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
                  LT L+ L+I ++ L    P  + ++ ++ +L L       +     +   S +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 270 EGLLLSTRNNTLHVKTENWLPT----SQLIVLGLTKCNLNG----SYPDFLLHQYHLKYL 321
           E L L  R+  L     + L T    S +         +           L     L  L
Sbjct: 225 ECLEL--RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

Query: 322 DLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 353
           + S N+L  + P  +      L+ + L  N +
Sbjct: 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 49/288 (17%), Positives = 100/288 (34%), Gaps = 42/288 (14%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDI 372
           +K LDLS+N++        L+    L+ L+L +N  + I       L       L HLD+
Sbjct: 54  VKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-----LEHLDL 107

Query: 373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLS 431
           S N     L  +    L  L ++++  N ++     S    + +L +L +        + 
Sbjct: 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 432 QSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS- 486
           +    G   LE L++  ++              ++  + HL          + +  +   
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSL----KSIQNVSHLILHMKQHI-LLLEIFVDVT 221

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546
           +S++ L++ +  L                  +   + L       L      R + I++ 
Sbjct: 222 SSVECLELRDTDLD-----------------TFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 547 RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDN 593
            L   +     +S +  L   +N L   +P  +F     L  + L  N
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 42/293 (14%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
             +K LD+S+N++     S +    +L+ L L+ N       ++++   S    L     
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDS-FSSL----- 99

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
                           L  L L+   L+     +      L +L+L  N       T L 
Sbjct: 100 --------------GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 338 RNNPKLEVLLLKNNSFSGILQLPK---AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 394
            +  KL++L + N       ++ +   A   FL  L+I  ++ +          +Q + +
Sbjct: 146 SHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSH 202

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-------SLELLDLS 447
           + +        +         +  L+L            + TG         +   + ++
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNML 499
           + +   Q       ++ L  L F  N     + DG+    TSLQ + +  N  
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 58/316 (18%), Positives = 113/316 (35%), Gaps = 60/316 (18%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQL-NNLERLRILD 542
           + +++ LD+SNN ++ +I +   +      L+ L ++ N +   +     ++L  L  LD
Sbjct: 51  TEAVKSLDLSNNRIT-YISN--SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 543 ISENRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRI 599
           +S N LS  ++SS    LSS+  L+L  N    L    LF    KL  L + +     +I
Sbjct: 107 LSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 600 PHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
             +     + L  L +  + LQ   P  L  +Q ++ + L   +    +   F +V    
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT--- 221

Query: 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 718
                    S +   EL  + +  +   +  S                            
Sbjct: 222 ---------SSVECLELR-DTDLDTFHFSELSTGETNSLIKKFTFRN------------- 258

Query: 719 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FS 777
                             + ++   L  ++   + Q+  +L L  S N L  S+P+  F 
Sbjct: 259 ------------------VKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298

Query: 778 NLKMIESLDISYNKLT 793
            L  ++ + +  N   
Sbjct: 299 RLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 21/249 (8%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN---NFEGQFFSEYMNLTRLRHLYFE 471
            +  LDLS N  +  +S S +  C +L+ L L++N     E   FS   +L  L HL   
Sbjct: 53  AVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFS---SLGSLEHLDLS 108

Query: 472 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 530
            N  S  +        +SL  L++  N         + +  ++L+IL +        +  
Sbjct: 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 531 Q-LNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 588
           +    L  L  L+I  + L      SL ++ +V HL L       L+   +  +  +  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 589 NLRDNTFSGRIPHQINEHS--------NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 640
            LRD         +++             R + +    L   +   L Q+  L  ++ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 641 NKFSGSIPP 649
           N+   S+P 
Sbjct: 287 NQLK-SVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKL 792
           V  LDLS N++T    SD+ +   + AL L++N ++ +I E SFS+L  +E LD+SYN L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 793 TGQIPPQ----LTALNFLSIFNVSYNNLS 817
           +  +       L++L FL++     N   
Sbjct: 113 S-NLSSSWFKPLSSLTFLNL---LGNPYK 137

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.2 bits (196), Expect = 6e-17
 Identities = 21/160 (13%), Positives = 60/160 (37%), Gaps = 13/160 (8%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
           +  L  + L+      +  V     +     +K L + + +  +  ++ ++ L +L  L 
Sbjct: 43  MNSLTYITLA------NINVTDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR 94

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           +    +   +    +  L +L  +++  +     ++T +  L ++  +D+S N     + 
Sbjct: 95  IMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
             +  L  L+ L++  +          + +  KL  L   
Sbjct: 153 MPLKTLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 10/138 (7%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
              ++ L ++            Y+ +  L  L+ L +            L+ L SL  L 
Sbjct: 65  AHNIKDLTINNI------HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           +  +  + S     I  L  +  ++L  N   +  I  LK L  LK L+I  + ++    
Sbjct: 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDY-- 174

Query: 236 SVISNLTSLEYLDLSHNN 253
             I +   L  L      
Sbjct: 175 RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 38/214 (17%)

Query: 143 SLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLE 202
           + K     +LG +   +   + +N   SL  + L    +       GI    N+ ++ + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVTDLT---GIEYAHNIKDLTIN 74

Query: 203 RNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 262
                +     +  L+ L+ L I    +       +S LTSL  LD+SH+  +    L+ 
Sbjct: 75  NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTK 131

Query: 263 LANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLD 322
           +    K+  + LS       +     LP                           LK L+
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLP--------------------------ELKSLN 165

Query: 323 LSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI 356
           +  + +        + + PKL  L   + +  G 
Sbjct: 166 IQFDGVHDYRG---IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 40/188 (21%)

Query: 192 ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 251
           ++ +L  + L    +    +T ++    +K L I++        + IS L++LE L +  
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMG 97

Query: 252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 311
            +      + +L+  + L  L +S                             + S    
Sbjct: 98  KDVTSD-KIPNLSGLTSLTLLDIS-------------------------HSAHDDSILTK 131

Query: 312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN---SFSGILQLPKAKHDFLH 368
           +     +  +DLS+N  + +     L+  P+L+ L ++ +    + GI   PK     L+
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPK-----LN 184

Query: 369 HLDISCNN 376
            L      
Sbjct: 185 QLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNN 497
           SL  + L+N N      +       ++ L   N        +   +   ++L+ L I   
Sbjct: 45  SLTYITLANINVTD--LTGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGK 98

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 557
            ++      +   +S L +L +S +  + ++  ++N L ++  +D+S N     I     
Sbjct: 99  DVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 597
           L  ++ L++Q + ++     E F   KL  L     T  G
Sbjct: 158 LPELKSLNIQFDGVHDYRGIEDFP--KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTL 168
           N +    L  L+ L +     T   K+    +L  L  L +L + H+  DDSI + +NTL
Sbjct: 80  NYNPISGLSNLERLRIMGKDVT-SDKI---PNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
           P + ++ L +N          +  L  L  +N++ + +       +++  +L  L   S 
Sbjct: 136 PKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQ 191

Query: 229 QLNG 232
            + G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 472
              +  L ++  + +   + + ++G  +LE L +   +           LT L  L   +
Sbjct: 65  AHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 473 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL 532
           +     I   + +   +  +D+S N     I   +      L+ L++  + +       +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPE-LKSLNIQFDGVHDYRG--I 177

Query: 533 NNLERLRILDISENRLSG 550
            +  +L  L      + G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           S ++ +  L +    +T +   ++  L ++  L++S+++   SI    + L  + S+D+S
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           YN     I P L  L  L   N+ ++ + 
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 794
             L ++    T    + I  L  +  L +    ++     + S L  +  LDIS++    
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 795 QIPPQLTALNFLSIFNVSYNNL 816
            I  ++  L  ++  ++SYN  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 6/137 (4%)

Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 572
                 + ++       +    +  L  + ++   ++  +       +++ L++      
Sbjct: 24  AYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHAT 79

Query: 573 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 632
              P  +     L  L +     +      ++  ++L  L +  +     I  ++  L K
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 633 LAMMDLSRNKFSGSIPP 649
           +  +DLS N     I P
Sbjct: 138 VNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           + +N +T + L+   +T ++ + I     I  L ++N   +       S L  +E L I 
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 823
              +T    P L+ L  L++ ++S++        K
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 527 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
           NV +  +  +      + ++  +  I +   ++S+ +++L    +  L   E      + 
Sbjct: 14  NVNIPDSTFKAYLNGLLGQSSTA-NI-TEAQMNSLTYITLANINVTDLTGIEYAH--NIK 69

Query: 587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 646
            L + +   +   P  I+  SNL  L + G  +       L  L  L ++D+S +    S
Sbjct: 70  DLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 647 IPPCFAN 653
           I      
Sbjct: 128 ILTKINT 134

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.8 bits (204), Expect = 2e-16
 Identities = 60/323 (18%), Positives = 107/323 (33%), Gaps = 49/323 (15%)

Query: 141 LRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMN 200
             +  +     L      D      N L S+  +I + + I+   + QGI  L N+ ++ 
Sbjct: 17  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 71

Query: 201 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL 260
           L  N +    I  L NL  L  L +  N++     S + +L  L+ L L HN       +
Sbjct: 72  LNGNKLTD--IKPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGISD---I 124

Query: 261 SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKY 320
           + L +  +LE L L   NN +                         +    L     L  
Sbjct: 125 NGLVHLPQLESLYLG--NNKI-------------------------TDITVLSRLTKLDT 157

Query: 321 LDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK 380
           L L  N++    P   L    KL+ L L  N  S +  L   K+  L  L++       K
Sbjct: 158 LSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRALAGLKN--LDVLELFSQECLNK 212

Query: 381 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 440
             ++       L+  +  KN  +G++        +      +  +     +  V    + 
Sbjct: 213 PINH----QSNLVVPNTVKN-TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 441 LELLDLSNNNFEGQFFSEYMNLT 463
              +  +   F G+       + 
Sbjct: 268 PVTIGKAKARFHGRVTQPLKEVY 290

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 4e-14
 Identities = 51/287 (17%), Positives = 91/287 (31%), Gaps = 69/287 (24%)

Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
                    + NL++  +          L  +  +  +++ +  S+   I  L ++  L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 71

Query: 249 LSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
           L+ N    + PL++L N   L  L L    N +              +  L         
Sbjct: 72  LNGNKLTDIKPLTNLKN---LGWLFLD--ENKIKD------------LSSLKDLK----- 109

Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
                    LK L L HN +        L + P+LE L L NN  + I  L +     L 
Sbjct: 110 --------KLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTK--LD 156

Query: 369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG 428
            L +  N                    DI               + +L  L LS+N+ S 
Sbjct: 157 TLSLEDNQIS-----------------DIV----------PLAGLTKLQNLYLSKNHIS- 188

Query: 429 GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 475
                 + G  +L++L+L +     +  +   NL     +   + + 
Sbjct: 189 --DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 3e-13
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 25/228 (10%)

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
             + +  ++ K      +  +  E+  +  +  + +      S   +    ++  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 74

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLS--GHIP 504
           N           NL  L  L+ + N    KIKD   L     L+ L + +N +S    + 
Sbjct: 75  NKLTD--IKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDINGLV 128

Query: 505 HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 564
           H       +LE L +  N +  ++ V L+ L +L  L + +N++S  I     L+ +++L
Sbjct: 129 HL-----PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNL 180

Query: 565 SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL 612
            L KN ++ L    L     L  L L       +  +  +       +
Sbjct: 181 YLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 3e-13
 Identities = 53/379 (13%), Positives = 100/379 (26%), Gaps = 106/379 (27%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           I            ++    +        + L S++ +  ++++ + +  +  L N     
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPN----- 66

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
                                                          +  L L+ NKL  
Sbjct: 67  -----------------------------------------------VTKLFLNGNKLTD 79

Query: 331 NFPTWLLRNNPKLEVLLLKNN---SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 387
             P   L N   L  L L  N     S +  L K     L  L +  N            
Sbjct: 80  IKP---LTNLKNLGWLFLDENKIKDLSSLKDLKK-----LKSLSLEHNGIS--------- 122

Query: 388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447
                   DI+       +      + +L  L L  N  +     +V++    L+ L L 
Sbjct: 123 --------DIN------GLV----HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLE 161

Query: 448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPH 505
           +N            LT+L++LY   N     I D   L    +L VL++ +        +
Sbjct: 162 DNQISD--IVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPIN 215

Query: 506 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS 565
              N       +  +   L    P  +++       ++  +        S        + 
Sbjct: 216 HQSNL-VVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

Query: 566 LQKNALNGLIPGELFRSCK 584
             K   +G +   L     
Sbjct: 273 KAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 8e-13
 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 15/180 (8%)

Query: 91  SLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKIL 150
           +LKN   L    +   + ++S    L++L+SL L  N       ++  + L  L QL+ L
Sbjct: 85  NLKNLGWLFLDEN--KIKDLSSLKDLKKLKSLSLEHN------GISDINGLVHLPQLESL 136

Query: 151 VLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL 210
            LG+N   D   + L+ L  L TL L  N+I        +  L  L  + L +N I    
Sbjct: 137 YLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHISD-- 189

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           +  L  L  L +L++ S +      +  SNL     +  +  +      +S   ++ K  
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 56/368 (15%), Positives = 124/368 (33%), Gaps = 52/368 (14%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
           +         +   FP        +     LK  S +  +   +     +  +  + ++ 
Sbjct: 1   MGETITVSTPIKQIFP---DDAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDI 55

Query: 378 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 437
           +                  +        I Y    +  ++ L L+ N  +       +T 
Sbjct: 56  K-----------------SVQ------GIQY----LPNVTKLFLNGNKLT---DIKPLTN 85

Query: 438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
             +L  L L  N  +    S   +L +L+ L  E+N  S  I +GL+    L+ L + NN
Sbjct: 86  LKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNN 141

Query: 498 MLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASS 555
            ++      +   S  ++L+ LS+  N +   VP  L  L +L+ L +S+N +S  + + 
Sbjct: 142 KITD-----ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRAL 193

Query: 556 LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615
             L +++ L L                    T+   D +     P  I++  +     + 
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVK 251

Query: 616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 675
            +  +          Q +  +  ++ +F G +      V +     D  +  +K+ +   
Sbjct: 252 WHLPEFTNEVSFIFYQPV-TIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTR 310

Query: 676 DEEIEFGS 683
               +  +
Sbjct: 311 ITAPKPPT 318

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 7e-05
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
            ++ ++  L L  N ++ +I + +  L  + +L L NN ++       S L  +++L + 
Sbjct: 106 KDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 789 YNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
            N+++  I P L  L  L    +S N++S
Sbjct: 162 DNQIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 783
           +I+           +L    +T  +     +L +I  +  +N+ +  S+ +    L  + 
Sbjct: 13  QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVT 68

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
            L ++ NKLT  I P LT L  L    +  N + 
Sbjct: 69  KLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 44/289 (15%), Positives = 100/289 (34%), Gaps = 52/289 (17%)

Query: 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
            +        ++ +  ++  +  +  L+S++ +    + +  +   +      +  L L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYLP--NVTKLFLN 73

Query: 592 DNTFSGRIPH--QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
            N    ++     +    NL +L L  N ++      L  L+KL  + L  N  S  I  
Sbjct: 74  GN----KLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DING 126

Query: 650 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI 709
                         +++  +L    L        LGNN+ ++        LS L K    
Sbjct: 127 --------------LVHLPQLE--SLY-------LGNNKITDITV-----LSRLTK---- 154

Query: 710 DERVEIEFAMKNR-YEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL 768
              ++      N+  +I   + + ++  L LS N ++ ++   +  L+ +  L L +   
Sbjct: 155 ---LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQEC 209

Query: 769 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
                   SNL +  ++  +   L    P  ++        NV ++   
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 46/215 (21%), Positives = 76/215 (35%), Gaps = 19/215 (8%)

Query: 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 425
              + +  N     +P       + L  + +  N     I  +A   +  L  LDLS N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKD 481
               +  +   G   L  L L          G F      L  L++LY ++N     + D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF----RGLAALQYLYLQDNALQ-ALPD 146

Query: 482 GLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERL 538
                  +L  L +  N +S  +P     F     L+ L + +N +    P    +L RL
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 539 RILDISENRLSG-PIASSLNLSSVEHLSLQKNALN 572
             L +  N LS  P  +   L ++++L L  N   
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 40/235 (17%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLRHLYFE 471
               + L  N  S  +  +    C +L +L L +N     +   F+    L  L  L   
Sbjct: 33  ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFT---GLALLEQLDLS 88

Query: 472 NNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNV 528
           +N     +          L  L +    L   +    G F   + L+ L +  N L+  +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP--GLFRGLAALQYLYLQDNALQ-AL 144

Query: 529 PVQ-LNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
           P     +L  L  L +  NR+S     +   L S++ L L +N +   +    FR     
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDL--- 200

Query: 587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
                                 L  L L  N+L     + L  L+ L  + L+ N
Sbjct: 201 --------------------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 38/192 (19%), Positives = 62/192 (32%), Gaps = 15/192 (7%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
            + R+    +    +  + F     L  L L  N+       A       L  L+ L L 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLS 88

Query: 154 HN----YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
            N      D + F     L  L TL L    ++          L  L  + L+ N + + 
Sbjct: 89  DNAQLRSVDPATFHG---LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
                ++L  L  L +  N+++         L SL+ L L  N         +  +  +L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 270 EGLLLSTRNNTL 281
             L L    N L
Sbjct: 204 MTLYLF--ANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 47/240 (19%), Positives = 75/240 (31%), Gaps = 40/240 (16%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
              + + +  N+++    +      +L  L L  N        ++    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS-D 89

Query: 278 NNTL-HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 336
           N  L  V    +    +L  L L +C L    P        L+YL L  N L    P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 337 LRNNPKLEVLLLKNNSFSGILQ-----LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQK 391
            R+   L  L L  N  S + +     L       L  L +  N                
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHS-----LDRLLLHQNRVA------------- 190

Query: 392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF 451
                +  + F          +  L  L L  N  S  L    +    +L+ L L++N +
Sbjct: 191 ----HVHPHAFRD--------LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 15/168 (8%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLP 169
           F  L  L+ LDLS N      +     +   L +L  L L           +F     L 
Sbjct: 76  FTGLALLEQLDLSDN---AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLA 129

Query: 170 SLCTLILHWNRIEGSQTN--QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISS 227
           +L  L L  N ++    +  +    L NL  + L  N I S      + L  L  L +  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRD---LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 228 NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           N++    P    +L  L  L L  NN     P  +LA    L+ L L+
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 15/152 (9%)

Query: 108 LNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSY 164
           ++ + FH L  L +L L                 R L  L+ L L  N      D  F  
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 165 LNTLPSLCTLILHWNRIEGSQTN--QGICELKNLFEMNLERNFIGSPLITCLKNLTRLKI 222
              L +L  L LH NRI        +G   L +L  + L +N +        ++L RL  
Sbjct: 152 ---LGNLTHLFLHGNRISSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 223 LDISSNQLNGSLPSVISNLTSLEYLDLSHNNF 254
           L + +N L+      ++ L +L+YL L+ N +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 11/169 (6%)

Query: 485 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
            +            L   +P       +  + + +  N +             L IL + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 545 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
            N L+   A++   L+ +E L L  NA    +    F    +L TL+L        +   
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 603 I-NEHSNLRFLLLGGNHLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPP 649
           +    + L++L L  N LQ  +PD   + L  L  + L  N+ S S+P 
Sbjct: 124 LFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 41/173 (23%), Positives = 63/173 (36%), Gaps = 9/173 (5%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
             + Q + +  N +S H+P         L IL +  N L          L  L  LD+S+
Sbjct: 31  PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 546 NRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
           N     +  +    L  +  L L +  L   +   LFR    L  L L+DN     +P  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 603 INEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFAN 653
                 NL  L L GN +          L  L  + L +N+ +  + P  F +
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 46/273 (16%), Positives = 80/273 (29%), Gaps = 73/273 (26%)

Query: 554 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-N 604
               L +V        + + L  N ++ +          L  L L  N  + RI      
Sbjct: 19  PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFT 77

Query: 605 EHSNLRFLLLGGNHLQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSD 662
             + L  L L  N     +       L +L  + L R      + P  F  +        
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL-------- 128

Query: 663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNR 722
                + L    L        L +N         +R L  L                   
Sbjct: 129 -----AALQ--YLY-------LQDNALQALPDDTFRDLGNLTH----------------- 157

Query: 723 YEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSNLKM 781
                         L L  N+++  +P      L ++  L L  N ++   P +F +L  
Sbjct: 158 --------------LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 782 IESLDISYNKLTGQIPP----QLTALNFLSIFN 810
           + +L +  N L+  +P      L AL +L + +
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 62/224 (27%)

Query: 598 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 657
            +P  I   +  + + L GN +           + L ++ L  N  +  I          
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA-------- 73

Query: 658 RVGSDDVLNG-SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 716
                    G + L   +L          N +  +     +  L  L             
Sbjct: 74  -----AAFTGLALLEQLDLS--------DNAQLRSVDPATFHGLGRLHT----------- 109

Query: 717 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE- 774
                               L L    L  E+   +   L A+  L L +N+L  ++P+ 
Sbjct: 110 --------------------LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 775 SFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLS 817
           +F +L  +  L +  N+++  +P +    L+ L    +  N ++
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 4e-16
 Identities = 52/316 (16%), Positives = 104/316 (32%), Gaps = 65/316 (20%)

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQK 568
           NFS        + +    +     +  E+  +   + N     +   L ++    L L +
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNR 68

Query: 569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 628
             L+ L P  L     +  L +  N     +P      ++L +L    N L   +P+   
Sbjct: 69  LNLSSL-PDNLPPQ--ITVLEITQNALI-SLPELP---ASLEYLDACDNRLST-LPELPA 120

Query: 629 QLQKLAMMDLSRNKFSGSIPPCFAN--VLSWRVGSDDVLNGSKLNS-PELDEEIEFGSLG 685
            L+ L   D+  N+ +  +P   A    ++         + ++L   PEL   +E  S+ 
Sbjct: 121 SLKHL---DVDNNQLT-MLPELPALLEYIN--------ADNNQLTMLPELPTSLEVLSVR 168

Query: 686 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 745
           NN+           L+ L                              +  LD+S N L 
Sbjct: 169 NNQ-----------LTFLP------------------------ELPESLEALDVSTNLLE 193

Query: 746 GEIPSDIGQLQ----AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT 801
             +P+   +        +      N ++  IPE+  +L    ++ +  N L+ +I   L+
Sbjct: 194 -SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 802 ALNFLSIFNVSYNNLS 817
                  ++      S
Sbjct: 252 QQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 58/290 (20%), Positives = 97/290 (33%), Gaps = 34/290 (11%)

Query: 369 HLDISCNNFRGKL---PHNMGVILQKLMYMDISKNCFEGNIPY-SAGEMKELSLLDLSRN 424
           +  +S N+F   +     +      K     +        +       + + S L L+R 
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 425 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 484
                LS         + +L+++ N        E      L +L   +N  S  + +   
Sbjct: 70  ----NLSSLPDNLPPQITVLEITQNALI--SLPE--LPASLEYLDACDNRLS-TLPELP- 119

Query: 485 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
              SL+ LD+ NN L+  +P         LE ++   N L   +P    +LE L    + 
Sbjct: 120 --ASLKHLDVDNNQLT-MLPELPAL----LEYINADNNQLT-MLPELPTSLEVL---SVR 168

Query: 545 ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKL----VTLNLRDNTFSGRIP 600
            N+L+          S+E L +  N L  L P    R+       +    R+N  +  IP
Sbjct: 169 NNQLTFLPEL---PESLEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 650
             I        ++L  N L   I + L Q          R  FS S    
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.5 bits (180), Expect = 1e-13
 Identities = 63/350 (18%), Positives = 108/350 (30%), Gaps = 71/350 (20%)

Query: 531 QLNNLERLRILDISENRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
            +NN   L   +   N +SG  A                  +N    L+   L       
Sbjct: 6   PINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FS 62

Query: 587 TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 646
            L L     S  +P  +     +  L +  N L   +P+    L+ L   D   N+ S +
Sbjct: 63  ELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-T 114

Query: 647 IPPCFANV--LSWRVGSDDVLNGSKLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 703
           +P   A++  L         ++ ++L   PEL   +E+ +  NN+           L+ L
Sbjct: 115 LPELPASLKHLD--------VDNNQLTMLPELPALLEYINADNNQ-----------LTML 155

Query: 704 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL 763
                                         +  L +  NQLT  +P     L+A   L++
Sbjct: 156 P------------------------ELPTSLEVLSVRNNQLT-FLPELPESLEA---LDV 187

Query: 764 SNNSLSGSIPESFSNL----KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR 819
           S N L  S+P          +         N++T  IP  + +L+      +  N LS R
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 820 TPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTLKPTTTQASGAEEEEEE 869
             +     T     +           QQ            A   E ++ +
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSD 295

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 59/306 (19%), Positives = 103/306 (33%), Gaps = 56/306 (18%)

Query: 216 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           N   L   +   N ++G+     S     E   L   N                      
Sbjct: 9   NNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGEN---------------------- 45

Query: 276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 335
            RN  + +  E  +  +Q   L L + NL+ S PD L     +  L+++ N L+ + P  
Sbjct: 46  -RNEAVSLLKECLI--NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPEL 98

Query: 336 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 395
                  LE L   +N  S + +LP +    L HLD+  N     LP    + L+ +   
Sbjct: 99  P----ASLEYLDACDNRLSTLPELPAS----LKHLDVDNNQLT-MLPELPAL-LEYI--- 145

Query: 396 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG-- 453
           +   N     +P     ++ LS+ +    +              SLE LD+S N  E   
Sbjct: 146 NADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELPE--------SLEALDVSTNLLESLP 196

Query: 454 QFFSEYMNLTRLR-HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 512
                  +            N  +  I + +LS      + + +N LS  I   +   ++
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 513 ELEILS 518
           + +   
Sbjct: 256 QPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.8 bits (160), Expect = 4e-11
 Identities = 57/314 (18%), Positives = 103/314 (32%), Gaps = 57/314 (18%)

Query: 492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSG 550
            +   N +SG       +   + E  ++   +    V + +   + +   L ++   LS 
Sbjct: 15  QNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 551 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 610
            +  +L    +  L + +NAL  L P        L  L+  DN  S  +P      ++L+
Sbjct: 74  -LPDNL-PPQITVLEITQNALISL-PELP---ASLEYLDACDNRLS-TLPELP---ASLK 123

Query: 611 FLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN--VLSWRVGSDDVLNGS 668
            L +  N L   +P+    L+ +   +   N+ +  +P    +  VLS        +  +
Sbjct: 124 HLDVDNNQLTM-LPELPALLEYI---NADNNQLT-MLPELPTSLEVLS--------VRNN 170

Query: 669 KLNS-PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN 727
           +L   PEL E +E   +  N   +      R   + E                       
Sbjct: 171 QLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIF------------------- 211

Query: 728 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI 787
                         N++T  IP +I  L     + L +N LS  I ES S          
Sbjct: 212 ---------FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 788 SYNKLTGQIPPQLT 801
                +     Q T
Sbjct: 262 PRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 3e-09
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 45/258 (17%)

Query: 138 YDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLF 197
           + +    ++  +     N     +   L  +     L L+   +  S     +     + 
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL--SSLPDNLP--PQIT 83

Query: 198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 257
            + + +N     LI+  +    L+ LD   N+L+ +LP + ++L    +LD+ +N     
Sbjct: 84  VLEITQN----ALISLPELPASLEYLDACDNRLS-TLPELPASLK---HLDVDNNQ---- 131

Query: 258 FPLSSLANH-SKLEGLLLSTRNNTLHVKTENWLPTS--QLIVLGLTKCNLNGSYPDFLLH 314
             L+ L    + LE +     NN L +     LP     L VL +    L    P+    
Sbjct: 132 --LTMLPELPALLEYINAD--NNQLTM-----LPELPTSLEVLSVRNNQLT-FLPELP-- 179

Query: 315 QYHLKYLDLSHNKLVG--NFPTWLLRNNPKLEVLLLKNNSFS----GILQLPKAKHDFLH 368
              L+ LD+S N L      P     +         + N  +     IL L         
Sbjct: 180 -ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP-----TC 233

Query: 369 HLDISCNNFRGKLPHNMG 386
            + +  N    ++  ++ 
Sbjct: 234 TIILEDNPLSSRIRESLS 251

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 27/184 (14%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLP----SLCTL 174
           L+ ++   N  T   +            L++L + +N         L  LP    SL  L
Sbjct: 142 LEYINADNNQLTMLPE--------LPTSLEVLSVRNNQ--------LTFLPELPESLEAL 185

Query: 175 ILHWNRIEGSQTNQGICELKNLFEM----NLERNFIGSPLITCLKNLTRLKILDISSNQL 230
            +  N +E            +  E         N I   +   + +L     + +  N L
Sbjct: 186 DVSTNLLE--SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPL 242

Query: 231 NGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLP 290
           +  +   +S  T+          F       +  +    + +      N     ++ W  
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 291 TSQL 294
               
Sbjct: 303 FEHE 306

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 6e-16
 Identities = 52/248 (20%), Positives = 91/248 (36%), Gaps = 48/248 (19%)

Query: 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTL 168
            +     L  L  L+L  N      ++     L++L ++  L L  N   +   S +  L
Sbjct: 55  TIEGVQYLNNLIGLELKDN------QITDLAPLKNLTKITELELSGNPLKN--VSAIAGL 106

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
            S+ TL L   +I        +  L NL  + L+ N I +  I+ L  LT L+ L I + 
Sbjct: 107 QSIKTLDLTSTQI---TDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNA 161

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW 288
           Q++    + ++NL+ L  L    N       +S LA+   L  + L   NN +       
Sbjct: 162 QVSDL--TPLANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLK--NNQI------- 207

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
                             S    L +  +L  + L++  +          NN  +   ++
Sbjct: 208 ------------------SDVSPLANTSNLFIVTLTNQTITNQPV---FYNNNLVVPNVV 246

Query: 349 KNNSFSGI 356
           K  S + I
Sbjct: 247 KGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 43/255 (16%), Positives = 92/255 (36%), Gaps = 23/255 (9%)

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
              L +   +    + +  + T     +L  +  ++     + +  I  ++ L  L  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK 284
           +  NQ+  +  + + NLT +  L+LS N  + +  ++ L +   ++ L L+       V 
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLT-STQITDVT 123

Query: 285 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344
               L    L VL L    +  +    L    +L+YL + + ++    P   L N  KL 
Sbjct: 124 PLAGLS--NLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLT 176

Query: 345 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG 404
            L   +N  S I  L  A    L  + +  N     +          L  + ++      
Sbjct: 177 TLKADDNKISDISPL--ASLPNLIEVHLKNNQIS-DVSPLAN--TSNLFIVTLTNQTITN 231

Query: 405 NIPYSAGEMKELSLL 419
              +    +   +++
Sbjct: 232 QPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 47/265 (17%), Positives = 100/265 (37%), Gaps = 30/265 (11%)

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
           L   + +   K+     +  +  ++  ++ L       +   +   V    +L  L+L +
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHW 506
           N       +   NLT++  L    N     +K+   +    S++ LD+++  ++      
Sbjct: 73  NQITD--LAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITD----- 121

Query: 507 MGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHL 564
           +   +  S L++L +  N +    P  L  L  L+ L I   ++S  +    NLS +  L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTL 178

Query: 565 SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 624
               N ++ + P  L     L+ ++L++N  S   P  +   SNL  + L    +     
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 625 DQLCQLQKLAMMDLSRNKFSGSIPP 649
                   L + ++ +      I P
Sbjct: 235 ---FYNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 44/289 (15%), Positives = 84/289 (29%), Gaps = 54/289 (18%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           I     L     +    + +        ++L  +  L         +  +  L N   L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNN---LI 66

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
           GL L   +N +                         +    L +   +  L+LS N L  
Sbjct: 67  GLELK--DNQI-------------------------TDLAPLKNLTKITELELSGNPLKN 99

Query: 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI-- 388
                 +     ++ L L +   + +  L    +  L  L +  N        N+  +  
Sbjct: 100 VSA---IAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQIT-----NISPLAG 149

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
           L  L Y+ I         P +   + +L+ L    N  S     S +    +L  + L N
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKN 204

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 497
           N       S   N + L  +   N   +      +  + +L V ++   
Sbjct: 205 NQISD--VSPLANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 49/307 (15%), Positives = 109/307 (35%), Gaps = 52/307 (16%)

Query: 513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 572
               ++  K+++   V     +L+ +  L      ++  I     L+++  L L+ N + 
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQIT 76

Query: 573 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK 632
            L P +     K+  L L  N         I    +++ L L    +    P  L  L  
Sbjct: 77  DLAPLKNLT--KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 633 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNT 692
           L ++ L  N+ + +I P              +   + L    L        +GN + S+ 
Sbjct: 131 LQVLYLDLNQIT-NISP--------------LAGLTNLQ--YLS-------IGNAQVSD- 165

Query: 693 MFGMWRWLSALEKRAAIDERVEIEFAMKNRY-EIYNGSNVNRVTGLDLSCNQLTGEIPSD 751
                  L+ L        ++    A  N+  +I   +++  +  + L  NQ++   P  
Sbjct: 166 -------LTPLANL----SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-- 212

Query: 752 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFN 810
           +     +  + L+N +++       +NL +    ++        I P  ++     +  N
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVV---PNVVKGPSGAPIAPATISDNGTYASPN 269

Query: 811 VSYNNLS 817
           +++N  S
Sbjct: 270 LTWNLTS 276

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 83/511 (16%), Positives = 158/511 (30%), Gaps = 67/511 (13%)

Query: 103 DWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDS-----------LRSLKQLKILV 151
             +      L      L+SL L          +   +              +L+QLK + 
Sbjct: 59  LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH 118

Query: 152 LGHNYFDDSIFSYL--NTLPSLCTLILHWNRIEGSQTNQGICEL----KNLFEMNLERNF 205
                  D     L       L TL L         T  G+  +    + +  + +E + 
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEESS 175

Query: 206 I----GSPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNFEGM 257
                G  L    ++ T L++L+    +        L ++  N  SL  + +       +
Sbjct: 176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235

Query: 258 FPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH 317
                 A + +         +  +  K  N +   +L  LGL+    N   P        
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQ 294

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN-SFSGILQLPKAKHDFLHHLDIS-CN 375
           ++ LDL +  L       L++  P LEVL  +N     G+  L +     L  L I    
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ-LKRLRIERGA 353

Query: 376 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV 435
           + +G       V  + L+   +++ C            +EL  + +  +  +    +S+ 
Sbjct: 354 DEQGMEDEEGLVSQRGLIA--LAQGC------------QELEYMAVYVSDITNESLESIG 399

Query: 436 TGCFSLELLDLSNNNFEGQFFSEYM---------NLTRLRHLYFENNNFSGKIKDGLLS- 485
           T   +L    L   + E +     +            +LR   F      G + D  LS 
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTDLGLSY 457

Query: 486 ----STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL-EGNVPVQLNNLERLRI 540
               S +++ + +     S             L+ L M      E  +   +  L  LR 
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

Query: 541 LDISENRLS----GPIASSLNLSSVEHLSLQ 567
           L +   R S      +  +    ++E +  +
Sbjct: 518 LWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 56/365 (15%)

Query: 111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPS 170
           ++      L S+ +                  +L++     L  +      +  L     
Sbjct: 214 TIARNCRSLVSVKVGDFEILELVGFFKA--AANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271

Query: 171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQ 229
           LC L L +                 + +++L    + +    T ++    L++L+  +  
Sbjct: 272 LCRLGLSYMGPNEMPILFPFA--AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

Query: 230 LNGSLPSVISNLTSLEYLDLSHNNFEGMFP----------LSSLANH-SKLEGLLLSTRN 278
            +  L  +      L+ L +     E              L +LA    +LE + +   +
Sbjct: 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389

Query: 279 NTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW--- 335
            T             L  +G    NL              + + L   + + + P     
Sbjct: 390 IT----------NESLESIGTYLKNLC-----------DFRLVLLDREERITDLPLDNGV 428

Query: 336 --LLRNNPKLEVLLLKNN-------SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMG 386
             LL    KL                 S I Q        +  + +       +      
Sbjct: 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN----VRWMLLGYVGESDEGLMEFS 484

Query: 387 VILQKLMYMDISKNCF-EGNIPYSAGEMKELSLLDLSRNYFS--GGLSQSVVTGCFSLEL 443
                L  +++   CF E  I  +  ++  L  L +     S  G     +    +++EL
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544

Query: 444 LDLSN 448
           +    
Sbjct: 545 IPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 40/302 (13%), Positives = 85/302 (28%), Gaps = 39/302 (12%)

Query: 80  CNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYD 139
                 + M L               P     LF    +++ LDL   +   +       
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL-- 313

Query: 140 SLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL-------CTLILHWNRIEGSQTNQGICE 192
            ++    L++L   +   D  +         L                 EG  + +G+  
Sbjct: 314 -IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372

Query: 193 L----KNLFEMNLERNFIG----SPLITCLKNLTRLKILD------ISSNQLNGSLPSVI 238
           L    + L  M +  + I       + T LKNL   +++       I+   L+  + S++
Sbjct: 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432

Query: 239 SNLTSLEYLDLSHNNF----EGMFPLSSLANHSKLEGLLLSTRNNT---LHVKTENWLPT 291
                L               G+  +        +  +LL     +   L   +      
Sbjct: 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQ--YSPNVRWMLLGYVGESDEGLMEFSRGC--- 487

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWL--LRNNPKLEVLLL 348
             L  L +  C  +       + +   L+YL +   +        +   R    +E++  
Sbjct: 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547

Query: 349 KN 350
           + 
Sbjct: 548 RR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 53/343 (15%), Positives = 113/343 (32%), Gaps = 27/343 (7%)

Query: 313 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI 372
           +     +++ ++        P  L R  P L  L LK    + +  L     ++  ++  
Sbjct: 47  IDSETREHVTMALCYTA--TPDRLSRRFPNLRSLKLKGKPRAAMFNL--IPENWGGYVTP 102

Query: 373 SCNNFRGKLPHNMGVILQKL--MYMDISKNCFEGNIPYSAGEMKELSLLDLS--RNYFSG 428
                   L       L+ +    M +S    +     +     +L  L L     + + 
Sbjct: 103 WVTEISNNLRQ-----LKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTD 154

Query: 429 GLSQSVVTGCFSLELLDLSNNNF---EGQFFSEY-MNLTRLRHLYFENNNFSGKIKDGLL 484
           GL  S+VT C  ++ L +  ++F   +G++  E   + T L  L F    F+      L 
Sbjct: 155 GL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213

Query: 485 S----STSLQVLDISN-NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 539
           +      SL  + + +  +L             E    S++++       + L    +L 
Sbjct: 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 540 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGR 598
            L +S    +         + +  L L    L       L + C  L  L  R+      
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRG 333

Query: 599 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
           +         L+ L +     +  + D+   + +  ++ L++ 
Sbjct: 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 21/221 (9%)

Query: 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTL 168
           +    + L  +  +  + +       + +   ++ L  +  L L  N   D     L  L
Sbjct: 38  DAVTQNELNSIDQIIANNS------DIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLANL 89

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
            +L  L L  N+++       + +LK L  ++LE N I    I  L +L +L+ L + +N
Sbjct: 90  KNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNN 144

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW 288
           ++  +  +V+S LT L+ L L  N       +  LA  +KL+ L LS +N+   ++    
Sbjct: 145 KI--TDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLS-KNHISDLRALAG 198

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 329
           L    L VL L          +   +      +  +   LV
Sbjct: 199 LK--NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 43/292 (14%), Positives = 78/292 (26%), Gaps = 75/292 (25%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           I            ++    +        + L S++ +  ++++ + +  +  L N     
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPN----- 69

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
                                                          +  L L+ NKL  
Sbjct: 70  -----------------------------------------------VTKLFLNGNKLTD 82

Query: 331 NFPTWLLRNNPKLEVLLLKNN---SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 387
             P   L N   L  L L  N     S +  L K     L  L +  N     +   +  
Sbjct: 83  IKP---LANLKNLGWLFLDENKVKDLSSLKDLKK-----LKSLSLEHNGIS-DINGLVH- 132

Query: 388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447
            L +L  + +  N    +I      + +L  L L  N  S       + G   L+ L LS
Sbjct: 133 -LPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLS 186

Query: 448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
            N+           L  L  L   +     K  +   +      +  ++  L
Sbjct: 187 KNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 21/210 (10%)

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
             + +  ++ K      +  +  E+  +  +  + +      S   +    ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHW 506
           N           NL  L  L+ + N    K+KD   L     L+ L + +N +S  I   
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 507 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 566
           + +    LE L +  N +       L+ L +L  L + +N++S  I     L+ +++L L
Sbjct: 130 LVHLPQ-LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYL 185

Query: 567 QKNALNGLIPGELFRSCKLVTLNLRDNTFS 596
            KN ++ L    L     L  L L      
Sbjct: 186 SKNHISDLRA--LAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 13/155 (8%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
           L++L+SL L  N       ++  + L  L QL+ L LG+N   D   + L+ L  L TL 
Sbjct: 111 LKKLKSLSLEHN------GISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS 162

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           L  N+I        +  L  L  + L +N I    +  L  L  L +L++ S +      
Sbjct: 163 LEDNQIS---DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPI 217

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           +  SNL     +  +  +      +S   ++ K  
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 189 GICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLD 248
                    + NL++  +          L  +  +  +++ +  S+   I  L ++  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74

Query: 249 LSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY 308
           L+ N    + PL++L N   L  L L   N    + +   L   +L  L L    +  S 
Sbjct: 75  LNGNKLTDIKPLANLKN---LGWLFLD-ENKVKDLSSLKDLK--KLKSLSLEHNGI--SD 126

Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLH 368
            + L+H   L+ L L +NK+  +     L    KL+ L L++N  S I+ L  A    L 
Sbjct: 127 INGLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQ 181

Query: 369 HLDISCNN 376
           +L +S N+
Sbjct: 182 NLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 45/261 (17%), Positives = 92/261 (35%), Gaps = 46/261 (17%)

Query: 337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 396
                +     LK  S +  +   +     +  +  + ++ +                  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-----------------S 60

Query: 397 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF 456
           +        I Y    +  ++ L L+ N  +       +    +L  L L  N  +    
Sbjct: 61  VQ------GIQY----LPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKD--L 105

Query: 457 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SEL 514
           S   +L +L+ L  E+N  S  I +GL+    L+ L + NN ++      +   S  ++L
Sbjct: 106 SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-----ITVLSRLTKL 158

Query: 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 574
           + LS+  N +   VP  L  L +L+ L +S+N +S  + +   L +++ L L        
Sbjct: 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK 215

Query: 575 IPGELFRSCKLVTLNLRDNTF 595
                       T+   D + 
Sbjct: 216 PINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 478 KIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 535
            IK      +       ++    ++  +       +S ++ +  + + ++      +  L
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQG--IQYL 67

Query: 536 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNT 594
             +  L ++ N+L+  I    NL ++  L L +N +  L      +   KL +L+L  N 
Sbjct: 68  PNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNG 123

Query: 595 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 650
            S  I   +     L  L LG N +       L +L KL  + L  N+ S  I P 
Sbjct: 124 IS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPL 174

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 783
           ++ +  ++ ++  L L  N ++ +I + +  L  + +L L NN ++       S L  ++
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLD 159

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           +L +  N+++  I P L  L  L    +S N++S
Sbjct: 160 TLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 191

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 61/333 (18%), Positives = 97/333 (29%), Gaps = 73/333 (21%)

Query: 170 SLCTLILHWNRIEGSQTNQGICEL-------KNLFEMNLERNFIG----SPLITCLKNLT 218
           S+    L  + I    T +    +        ++ E+ L  N IG      L   + +  
Sbjct: 5   SIEGKSLKLDAI----TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 219 RLKILDISSNQLN----------GSLPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LAN 265
            L+I + S                 L   +     L  + LS N F      PL   L+ 
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 266 HSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH 325
           H+ LE L L   NN L  +          I   L +  +N        +   L+ +    
Sbjct: 121 HTPLEHLYLH--NNGLGPQ------AGAKIARALQELAVNKK----AKNAPPLRSIICGR 168

Query: 326 NKLVGNFPTW----LLRNNPKLEVLLLKNNSF-----SGILQLPKAKHDFLHHLDISCNN 376
           N+L  N          +++  L  + +  N         +L    A    L  LD+  N 
Sbjct: 169 NRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 377 FRGK--------LPHNMGVILQKLMYMDISKNCF--EGNIP----YSAGEMKELSLLDLS 422
           F           L          L  + ++       G       +S  E   L  L L 
Sbjct: 228 FTHLGSSALAIALKSW-----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 423 RNYFSG----GLSQSVVTGCFSLELLDLSNNNF 451
            N         L   +      L  L+L+ N F
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 66/401 (16%), Positives = 124/401 (30%), Gaps = 88/401 (21%)

Query: 214 LKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANH 266
           +   + ++   +  + +      S+ +V+    S++ + LS N    E    LS  +A+ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 267 SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 326
             LE    S  +       +      +L++  L KC               L  + LS N
Sbjct: 60  KDLEIAEFS--DIFTGRVKDEIPEALRLLLQALLKCP-------------KLHTVRLSDN 104

Query: 327 KLVGNFPTWL---LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPH 383
                    L   L  +  LE L L NN                     +          
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG----------------PQAG--------A 140

Query: 384 NMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ---SVVTGCFS 440
            +   LQ+L     +KN               L  +   RN    G  +           
Sbjct: 141 KIARALQELAVNKKAKNA------------PPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 441 LELLDLSNNNF--EG--QFFSEYM-NLTRLRHLYFENNNFSGK----IKDGLLSSTSLQV 491
           L  + +  N    EG      E +     L+ L  ++N F+      +   L S  +L+ 
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 492 LDISNNMLSGH-----IPHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRIL 541
           L +++ +LS       +  +    +  L+ L +  N +E +    L       +  L  L
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 542 DISENRLS--GPIASSLN--LSSVEHLSLQKNALNGLIPGE 578
           +++ NR S    +   +    S+     L +      +  E
Sbjct: 309 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDE 349

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 50/261 (19%), Positives = 84/261 (32%), Gaps = 65/261 (24%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDD-------------SIFSYL 165
           L ++ LS N F   ++    D L     L+ L L +N                 ++    
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 166 NTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDI 225
              P L ++I   NR+E    N  +   K   +                ++   L  + +
Sbjct: 156 KNAPPLRSIICGRNRLE----NGSM---KEWAKT--------------FQSHRLLHTVKM 194

Query: 226 SSNQLN-----GSLPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLLSTR 277
             N +        L   ++    L+ LDL  N F   G   L+  L +   L  L L+  
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN-- 252

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL----VGNFP 333
           +  L  +       +  +V   +K                L+ L L +N++    V    
Sbjct: 253 DCLLSAR------GAAAVVDAFSKL-----------ENIGLQTLRLQYNEIELDAVRTLK 295

Query: 334 TWLLRNNPKLEVLLLKNNSFS 354
           T +    P L  L L  N FS
Sbjct: 296 TVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 45/241 (18%)

Query: 412 EMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFEGQFFSEY--------- 459
           E   +  + LS N      ++     +     LE+ + S+  F G+   E          
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQ 88

Query: 460 --MNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE 513
             +   +L  +   +N F       + D L   T L+ L + NN L    P      +  
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARA 145

Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP----IASSL-NLSSVEHLSLQK 568
           L+ L+++K            N   LR +    NRL        A +  +   +  + + +
Sbjct: 146 LQELAVNKK---------AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

Query: 569 NALN----GLIPGELFRSCK-LVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHL 619
           N +       +  E    C+ L  L+L+DNTF+      +   +    NLR L L    L
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

Query: 620 Q 620
            
Sbjct: 257 S 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 37/241 (15%), Positives = 74/241 (30%), Gaps = 50/241 (20%)

Query: 439 FSLELLDLSNNNF--EG--QFFSEYMNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQ 490
           FS+E   L  +    E     F+  +    ++ +    N    +    + + + S   L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 550
           + + S+                 L+ L                    L  + +S+N    
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPK---------------LHTVRLSDNAFGP 108

Query: 551 ----PIASSL-NLSSVEHLSLQKN------------ALNGLIPGELFRSCK-LVTLNLRD 592
               P+   L   + +EHL L  N            AL  L   +  ++   L ++    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 593 NTFSGR----IPHQINEHSNLRFLLLGGNHL-----QGPIPDQLCQLQKLAMMDLSRNKF 643
           N                H  L  + +  N +     +  + + L   Q+L ++DL  N F
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 644 S 644
           +
Sbjct: 229 T 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
           L  +Q+ +   +       + +   ++    LK L L HN   D   S L  L  L  L 
Sbjct: 40  LSGVQNFNGDNS------NIQSLAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP 235
           ++ NR+     N        L  + L+ N +       L +L  L+IL I +N+L  S+ 
Sbjct: 92  VNRNRL----KNLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIV 144

Query: 236 SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
             +  L+ LE LDL  N          L    K+  + L+
Sbjct: 145 M-LGFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 20/184 (10%)

Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 472
           +      +L +   +             ++  +  N+N +    +     T L+ L+  +
Sbjct: 18  LANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSH 72

Query: 473 NNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 530
           N    +I D   L   T L+ L ++ N     + +  G  S+ L  L +  N L      
Sbjct: 73  N----QISDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS- 123

Query: 531 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 590
            L +L+ L IL I  N+L   I     LS +E L L  N +       L R  K+  ++L
Sbjct: 124 -LIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDL 179

Query: 591 RDNT 594
               
Sbjct: 180 TGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 19/190 (10%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
           +     L      ++    +   +      L+ ++  +  ++N + +  +    N   L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTN---LK 66

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
            L LS  N    +     L   +L  L + +  L             L  L L +N+L  
Sbjct: 67  ELHLS-HNQISDLSPLKDLT--KLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRD 120

Query: 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 390
                 L +   LE+L ++NN    I+ L       L  LD+  N             L+
Sbjct: 121 TDS---LIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNTGGLTR---LK 172

Query: 391 KLMYMDISKN 400
           K+ ++D++  
Sbjct: 173 KVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 13/135 (9%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
           L  L L  N      ++   DSL  LK L+IL + +N         L  L  L  L LH 
Sbjct: 108 LSRLFLDNN------ELRDTDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHG 159

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI 238
           N I       G+  LK +  ++L      +  +     L     +     +     P  I
Sbjct: 160 NEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYI 214

Query: 239 SNLTSLEYLDLSHNN 253
           SN  S     +    
Sbjct: 215 SNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 34/206 (16%), Positives = 74/206 (35%), Gaps = 24/206 (11%)

Query: 346 LLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN 405
            + +    + +   P   +      ++   +    +       L  +   +   +  + +
Sbjct: 2   SIQRPTPINQVFPDPGLAN--AVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNIQ-S 55

Query: 406 IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 465
           +         L  L LS N  S     S +     LE L ++ N  +       +    L
Sbjct: 56  LA-GMQFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKN---LNGIPSACL 108

Query: 466 RHLYFENNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 523
             L+ +NN    +++D   L+   +L++L I NN L   I        S+LE+L +  N 
Sbjct: 109 SRLFLDNN----ELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFL--SKLEVLDLHGNE 161

Query: 524 LEGNVPVQLNNLERLRILDISENRLS 549
           +       L  L+++  +D++  +  
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 20/136 (14%)

Query: 512 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 571
           +     ++ K  +   V      L  ++  +   + +   +A     ++++ L L  N +
Sbjct: 19  ANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQI 75

Query: 572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN-----EHSNLRFLLLGGNHLQGPIPDQ 626
           + L P  L    KL  L++  N        ++        + L  L L  N L+      
Sbjct: 76  SDLSP--LKDLTKLEELSVNRN--------RLKNLNGIPSACLSRLFLDNNELRDTDS-- 123

Query: 627 LCQLQKLAMMDLSRNK 642
           L  L+ L ++ +  NK
Sbjct: 124 LIHLKNLEILSIRNNK 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 41/273 (15%), Positives = 81/273 (29%), Gaps = 63/273 (23%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
                L     +L        S    LE +++S N+   +      +N  KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
           NN L++                         P+   +  +L+YL +S+  +  + P    
Sbjct: 90  NNLLYIN------------------------PEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 338 RNNPKLEVLLLKNN---------SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM--G 386
            ++ +  +L +++N         SF G+             L ++ N  + ++ ++   G
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE-------SVILWLNKNGIQ-EIHNSAFNG 176

Query: 387 VILQKLMYMD------ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS 440
             L +L   D      +  + F G             +LD+SR      L    +     
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHG--------ASGPVILDISRTRIH-SLPSYGLENLKK 227

Query: 441 LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 473
           L      N             L  L        
Sbjct: 228 LRARSTYNLKKLPTLE----KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 40/263 (15%), Positives = 70/263 (26%), Gaps = 42/263 (15%)

Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSI----FSYLNTLPSLCT 173
               L   +       K     +      L+ + +  N   + I    FS L  L  +  
Sbjct: 31  NAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI-- 84

Query: 174 LILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGS 233
            I   N +                   +             +NL  L+ L IS+  +   
Sbjct: 85  RIEKANNLL-----------------YINPEA--------FQNLPNLQYLLISNTGIKHL 119

Query: 234 LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQ 293
                 +      LD+  N        +S    S    +L   +N    +    +  T  
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

Query: 294 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF 353
             +      NL     D          LD+S  ++  + P++ L N  KL      N   
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKK 238

Query: 354 SGILQ-LPKAKHDFLHHLDISCN 375
              L+ L       L    ++  
Sbjct: 239 LPTLEKLVA-----LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 18/294 (6%)

Query: 93  KNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVL 152
           +N   L +      ++    F    +L+ +++S N      +   + +L  L +++I   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--E 87

Query: 153 GHN---YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF-IGS 208
             N   Y +   F     LP+L  L++    I+                ++++ N  I +
Sbjct: 88  KANNLLYINPEAFQN---LPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIHT 143

Query: 209 PLITCLKNLT-RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
                   L+    IL ++ N +   + +   N T L+ L+LS NN     P       S
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 268 KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 327
               L +S R     + +       +L              P        L    L++  
Sbjct: 203 GPVILDIS-RTRIHSLPSYGLENLKKLRARST---YNLKKLPTL-EKLVALMEASLTYPS 257

Query: 328 LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 381
               F  W  R   +L  +  K+     +  + +A+       + + +++    
Sbjct: 258 HCCAFANW-RRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGF 310

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 5e-09
 Identities = 48/312 (15%), Positives = 95/312 (30%), Gaps = 74/312 (23%)

Query: 488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 547
           S +V     + ++  IP    +       L      L        +    L  ++IS+N 
Sbjct: 10  SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 548 LSGPIASSL--NLSSVEHLSLQKNALNGL--IPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
           +   I + +  NL  +  + ++K   N L  I  E F++   L  L + +      +P  
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKA--NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDV 122

Query: 603 INEHS-NLRFLLLGGN-HLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRV 659
              HS     L +  N ++     +    L  +  ++ L++N     I            
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN---------- 171

Query: 660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 719
                 NG++L+   L          NN        ++   S                  
Sbjct: 172 ---SAFNGTQLDELNL--------SDNNNLEELPNDVFHGASGPVI-------------- 206

Query: 720 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPESFSN 778
                            LD+S  ++   +PS     L+ + A +  N      +P +   
Sbjct: 207 -----------------LDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEK 244

Query: 779 LKMIESLDISYN 790
           L  +    ++Y 
Sbjct: 245 LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQ-LNNLERLRILD 542
             +   L      L   I    G FS   +LE + +S+N +   +     +NL +L  + 
Sbjct: 29  PRNAIELRFVLTKLR-VIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 543 ISE-NRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 600
           I + N L      +  NL ++++L +    +  L       S + V L+++DN     I 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 601 HQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFAN 653
                        L L  N +Q  I +      +L  ++LS N     +P   F  
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 47/263 (17%), Positives = 81/263 (30%), Gaps = 51/263 (19%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ------LPKAKHDFLHHL 370
           +   L     KL              LE + +  N    +++      LPK     LH +
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK-----LHEI 84

Query: 371 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGL 430
            I   N    +       L  L Y+ IS    +           +  LLD+  N     +
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 431 SQSVVTGC-FSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 485
            ++   G  F   +L L+ N         F     N T+L  L   +NN   ++ + +  
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAF-----NGTQLDELNLSDNNNLEELPNDVFH 199

Query: 486 S-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
             +   +LDIS   +   +P +                         L NL++LR     
Sbjct: 200 GASGPVILDISRTRIH-SLPSYG------------------------LENLKKLRARSTY 234

Query: 545 ENRLSGPIASSLNLSSVEHLSLQ 567
             +    +     L ++   SL 
Sbjct: 235 NLKKLPTLE---KLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 41/259 (15%), Positives = 75/259 (28%), Gaps = 60/259 (23%)

Query: 559 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFL-LLGG 616
            +   L      L  +  G       L  + +  N     I   + +    L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 676
           N+L    P+    L  L  + +S       +P                 +  K++S +  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLP-----------------DVHKIHSLQK- 130

Query: 677 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 736
                  + +N +          +  +E+ +         F                   
Sbjct: 131 ---VLLDIQDNIN----------IHTIERNS---------FV----------GLSFESVI 158

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLS-NNSLSGSIPESFSNLKMIESLDISYNKLTGQ 795
           L L+ N +  EI +       +  LNLS NN+L     + F        LDIS  ++   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 796 IPPQ----LTALNFLSIFN 810
           +P      L  L   S +N
Sbjct: 217 LPSYGLENLKKLRARSTYN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
                +++T EIPSD+   +  + L      L      +FS    +E ++IS N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 797 PPQ----LTALNFLSIFNVSYNNLS 817
                  L  L+ + I     NNL 
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL 93

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 22/208 (10%)

Query: 440 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 494
           S + L L   +        F     NL  +  +Y   +    +++     + + +  ++I
Sbjct: 32  STQTLKLIETHLRTIPSHAF----SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 495 SNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVP--VQLNNLERLRILDISENRLSG 550
            N     +I            L+ L +    L+   P   ++ + +   IL+I++N    
Sbjct: 88  RNTRNLTYIDP--DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 551 PIASSL--NLSSV-EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI--NE 605
            I  +    L +    L L  N     + G  F   KL  + L  N +   I        
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 606 HSNLRFLLLGGNHLQGPIPDQLCQLQKL 633
           +S    L +    +       L  L++L
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 18/214 (8%)

Query: 71  DCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFT 130
           +C   +  +      + +     +T  L         +    F  L  +  + +S+++  
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 131 YDSKVAAYDSLRSLKQLKILVLGHN----YFDDSIFSYLNTLPSLCTLILHWNRIEGSQT 186
              ++ +  S  +L ++  + + +     Y D         LP L  L +    ++    
Sbjct: 69  --QQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKE---LPLLKFLGIFNTGLKMFPD 122

Query: 187 NQGICELKNLFEMNLERN----FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLT 242
              +      F + +  N     I       L N      L + +N    S+     N T
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGT 179

Query: 243 SLEYLDLSHNNFEGMFPLSSLAN-HSKLEGLLLS 275
            L+ + L+ N +  +    +    +S    L +S
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 27/198 (13%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL-----KNLTRLKI 222
            PS  TL L    +    ++     L N+  + +  +      +  L      NL+++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHA-FSNLPNISRIYVSID----VTLQQLESHSFYNLSKVTH 84

Query: 223 LDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTL 281
           ++I + +    +    +  L  L++L + +   +    L+ + +      L ++  N  +
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT-DNPYM 143

Query: 282 HVKTENWLP--TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN 339
                N      ++ + L L       S   +  +   L  + L+ NK +          
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 340 NP-KLEVLLLKNNSFSGI 356
                 +L +   S + +
Sbjct: 203 VYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 19/191 (9%), Positives = 57/191 (29%), Gaps = 13/191 (6%)

Query: 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 425
              L +   + R  +P +    L  +  + +S +     +   +   + +++ +++    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKD 481
               +    +     L+ L + N       +        +      L   +N +   I  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY---STDIFFILEITDNPYMTSIPV 148

Query: 482 GLLS--STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL-ERL 538
                       L + NN  +  +  +  N +    +      +L          +    
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 539 RILDISENRLS 549
            +LD+S+  ++
Sbjct: 208 SLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 68/287 (23%)

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546
              +   ++   +   IP    +     + L + + HL        +NL  +  + +S +
Sbjct: 11  HQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 547 RLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQI 603
                + S    NLS V H+ ++       I  +  +    L  L + +       P   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 604 NEHS--NLRFLLLGGNHLQGPIPDQLCQ--LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
             +S      L +  N     IP    Q    +   + L  N F+ S+            
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG---------- 173

Query: 660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 719
                 NG+KL++  L++                    ++L+ ++K A         F  
Sbjct: 174 ---YAFNGTKLDAVYLNK-------------------NKYLTVIDKDA---------FG- 201

Query: 720 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 766
                       +  + LD+S   +T  +PS    L+ +  L   N 
Sbjct: 202 ---------GVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 35/261 (13%), Positives = 73/261 (27%), Gaps = 60/261 (22%)

Query: 558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGG 616
             S + L L +  L  +          +  + +  +    ++        S +  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 617 N-HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 675
             +L    PD L +L  L  + +         P                 + +K+ S ++
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP-----------------DLTKVYSTDI 131

Query: 676 DEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 735
              +E     N             ++++   A         F              N   
Sbjct: 132 FFILEI--TDNPY-----------MTSIPVNA---------FQ----------GLCNETL 159

Query: 736 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE-SFSNLK-MIESLDISYNKLT 793
            L L  N  T  +         + A+ L+ N     I + +F  +      LD+S   +T
Sbjct: 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 794 GQIPP----QLTALNFLSIFN 810
             +P      L  L   + + 
Sbjct: 219 -ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 54/194 (27%)

Query: 89  QLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLK 148
            + ++NT  L Y       ++      L  L+ L +                + S     
Sbjct: 84  HIEIRNTRNLTY-------IDPDALKELPLLKFLGIFNTGLK---MFPDLTKVYSTDIFF 133

Query: 149 ILVLGHN----YFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERN 204
           IL +  N        + F  L       TL L+ N                    +++  
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFT-----------------SVQGY 174

Query: 205 -FIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTS-LEYLDLSHNN-------- 253
            F          N T+L  + ++ N+    +       + S    LD+S  +        
Sbjct: 175 AF----------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 254 FEGMFPLSSLANHS 267
            E +  L +    +
Sbjct: 225 LEHLKELIARNTWT 238

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 4e-12
 Identities = 106/632 (16%), Positives = 193/632 (30%), Gaps = 168/632 (26%)

Query: 310 DFLLHQYHLKYLD-LSHN--KLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF 366
           DF   ++  +Y D LS      V NF    +++ PK    +L       I+    A    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGT 64

Query: 367 LHHLDISCNN--------FRGKLPHNMGVILQKL------------MYMDISKNCFEGNI 406
           L       +             L  N   ++  +            MY++     +  N 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 407 PYSAG------EMKEL--SLLDLSRN-----YFSGGLSQSVVTG--CFSLELLDLSNNNF 451
            ++           +L  +LL+L            G  ++ V    C S ++        
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC----KM 180

Query: 452 EGQFFSEYMNLTRLR--HLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG 508
           + + F  ++NL          E       +I             D S+N     I   + 
Sbjct: 181 DFKIF--WLNLKNCNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSN-----IKLRIH 228

Query: 509 NFSSELEILSMSKNHLEG-----NVPVQLNNLERLRILDIS-----ENRLSGPIASSLNL 558
           +  +EL  L  SK +        NV     N +     ++S       R    +   L+ 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQ-VTDFLSA 283

Query: 559 SSVEHLSLQKNALNGLIPGE---LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 615
           ++  H+SL  +    L P E   L        L+ R       +P ++   +  R  ++ 
Sbjct: 284 ATTTHISLDHH-SMTLTPDEVKSLLLKY----LDCR----PQDLPREVLTTNPRRLSIIA 334

Query: 616 GNHLQGPI---------PDQLCQLQKLAMMDLS----RNKF--------SGSIPPCFANV 654
            +   G            D+L  + + ++  L     R  F        S  IP     +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT---IL 391

Query: 655 LS--WRVGSDDVLNGSKLNSPELDEEIEFGSL---GNNRSSNTMFGMWRWLSALEKRAAI 709
           LS  W        +  K +   +  ++   SL       S+ ++  +      LE +  +
Sbjct: 392 LSLIW-------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKL 439

Query: 710 DERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG-QLQAI---------- 758
           +    +  ++ + Y I    + +     DL    L     S IG  L+ I          
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSD-----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 759 -LALNL-----------SNNSLSGSIPESFSNLKM----IESLDISYNKLTGQIPPQLTA 802
            + L+            +  + SGSI  +   LK     I   D  Y +L   I      
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------ 548

Query: 803 LNFLSIFNVSYNNLSGRTPDKGQFATFDESSY 834
           L+FL    +  N +  +  D  + A   E   
Sbjct: 549 LDFL--PKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 61/372 (16%), Positives = 108/372 (29%), Gaps = 121/372 (32%)

Query: 108 LNMSLFH-PLEELQSLDLSVNIF---------TYD-SKVAAYDSLR-----SLKQLKILV 151
           L+      P E L +    ++I          T+D  K    D L      SL  L+   
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 152 LGHNYFDDSIFSYLNTLPS--LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSP 209
               +   S+F     +P+  L  +   W  +  S     + +L                
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYS------------ 415

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 269
           L+      + + I  I                    YL+L     E  + L     H   
Sbjct: 416 LVEKQPKESTISIPSI--------------------YLELKVKL-ENEYAL-----HRS- 448

Query: 270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLH-QYHLKYLDLSHNKL 328
              ++   N  +    ++           L    L+  Y  F  H  +HLK ++      
Sbjct: 449 ---IVDHYN--IPKTFDSD---------DLIPPYLDQ-Y--FYSHIGHHLKNIEHPER-- 489

Query: 329 VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI 388
           +  F    L            +  F   L+    K   + H   + N     L       
Sbjct: 490 MTLFRMVFL------------DFRF---LE---QK---IRHDSTAWNASGSILN-----T 523

Query: 389 LQKL-MYMD-ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 446
           LQ+L  Y   I  N      P    E    ++LD     F   + ++++   ++ +LL +
Sbjct: 524 LQQLKFYKPYICDND-----PKY--ERLVNAILD-----FLPKIEENLICSKYT-DLLRI 570

Query: 447 SNNNFEGQFFSE 458
           +    +   F E
Sbjct: 571 ALMAEDEAIFEE 582

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 52/291 (17%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLK-QLKILVLGHNYFDDS----IFSYLNTLP-SLC 172
           + SL+LS N  +Y S      +L ++   + +L LG N F            + LP S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 173 TLILHWNRIEGSQTNQGICEL-----KNLFEMNLERNFIGSP----LITCLKNL-TRLKI 222
           +L L  N + G +++  + ++      N+  +NL  N + S     L   L ++   +  
Sbjct: 142 SLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 223 LDISSNQLNGSLPSVI-----SNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLL 274
           LD+S+N L     + +     S    +  L+L  N      +  L     +   L+ + L
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL----VG 330
               + +   ++      + +                      +  +D +  ++      
Sbjct: 261 D--YDIVKNMSKEQC---KALGAAFPNIQ-------------KIILVDKNGKEIHPSHSI 302

Query: 331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLP-----KAKHDFLHHLDISCNN 376
                +   + K +V  L N       +           D L     +C  
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 59/377 (15%), Positives = 111/377 (29%), Gaps = 82/377 (21%)

Query: 214 LKNLTRLKILDISSNQLNGS-----LPSVISNLTSLEYLDLSHNNF--EGMFPLSSL--A 264
                 +  LD+S N L        + +  +   S+  L+LS N+   +    L  +  A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLS 324
             + +  L LS   N L  K      +S  +V  L                  +  LDL 
Sbjct: 78  IPANVTSLNLS--GNFLSYK------SSDELVKTLAAIPF------------TITVLDLG 117

Query: 325 HNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS-----GILQLPKAKHDFLHHLDISCN 375
            N         F          +  L L+ N         ++Q+  A    ++ L++  N
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 376 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLS 431
           N       +      +L     S                 ++ LDLS N         L+
Sbjct: 178 NLA-----SKNC--AELAKFLASIPAS-------------VTSLDLSANLLGLKSYAELA 217

Query: 432 QSVVTGCFSLELLDLSNNNFEGQFFSEY----MNLTRLRHLYFENNNFSGK-------IK 480
               +    +  L+L  N   G           +L  L+ +Y + +            + 
Sbjct: 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277

Query: 481 DGLLSSTSLQVLDISNNMLSG----HIPHWMGNFSSELEILSMSKNHL-----EGNVPVQ 531
               +   + ++D +   +       I + +   S + ++ S+    L            
Sbjct: 278 AAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIED 337

Query: 532 LNNLERLRILDISENRL 548
           LN  + LR    +   L
Sbjct: 338 LNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 55/379 (14%), Positives = 103/379 (27%), Gaps = 83/379 (21%)

Query: 236 SVISNLTSLEYLDLSHNNF--EGMFPLSS--LANHSKLEGLLLSTRNNTLHVKTENWLPT 291
              S    +  LDLS NN        L        + +  L LS   N+L  K       
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--GNSLGFK------N 67

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLL 347
           S  +V  L                 ++  L+LS N L           L      + VL 
Sbjct: 68  SDELVQILAAIPA------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 348 LKNNSFS-----GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCF 402
           L  N FS        Q        +  L++  N+   K          +L+ +  +    
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-----SS--DELIQILAAIPAN 168

Query: 403 EGNIPYSAGEMKELSLLDLSRNYFS----GGLSQSVVTGCFSLELLDLSNNNFE---GQF 455
                        ++ L+L  N  +      L++ + +   S+  LDLS N         
Sbjct: 169 -------------VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215

Query: 456 FSEYM--NLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
            +         +  L    N   G     +K    S   LQ + +  +++          
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 510 FSSE------LEILSMSKNHLEGNVPVQL--------NNLERLRILD---ISENRLSGPI 552
             +       + ++  +   +  +  + +           +   +L+   I   +    I
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNI 335

Query: 553 ASSLNLSSVEHLSLQKNAL 571
                   +         L
Sbjct: 336 EDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 47/236 (19%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSL-KQLKILVLGHNYFDDS----IFSYLNTLP-SLC 172
           + SL+L  N     S       L ++   +  L L  N         +  +L ++P S+ 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 173 TLILHWNRIEGSQTNQGICEL-----KNLFEMNLERNFIGSP----LITCLKNLTRLKIL 223
           +L L  N + G ++   +  +      ++  +NL  N +  P    L     +L  L+ +
Sbjct: 200 SLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 224 DISSNQLNG-------SLPSVISNLTSLEYLDLSHNNF--EGMFPLSSLA--NHSKLEGL 272
            +  + +         +L +   N+  +  +D +          P+S+L      K +  
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 273 LLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL 328
            L   N  L    ++      L            + PD       L+    +   L
Sbjct: 319 SLL--NQCLIFAQKHQTNIEDL------------NIPD------ELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 53/286 (18%), Positives = 97/286 (33%), Gaps = 47/286 (16%)

Query: 416 LSLLDLSRNYFSG----GLSQSVVTGCFSLELLDLSNNNFE---GQFFSEYM--NLTRLR 466
           ++ LDLS N         L Q+      S+  L+LS N+          + +      + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 467 HLYFENNNFSGK----IKDGLLSS-TSLQVLDISNNMLSG----HIPHWMGNFSSELEIL 517
            L    N  S K    +   L +   ++ VLD+  N  S            N  + +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 518 SMSKNHLEGNVPVQL------NNLERLRILDISENRLSGP----IASSL--NLSSVEHLS 565
           ++  N L G                 +  L++  N L+      +A  L    +SV  L 
Sbjct: 144 NLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 566 LQKNALN-----GLIPGELFRSCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGG 616
           L  N L       L          +V+LNL  N   G     +    +   +L+ + L  
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 617 NHLQGPIPDQ-------LCQLQKLAMMDLSRNKFSGSIPPCFANVL 655
           + ++    +Q          +QK+ ++D +  +   S     +N++
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 22/179 (12%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
           +TT L+   +     +++   P   L  L+L     T   K+    +L  L  L    L 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLD---LS 85

Query: 154 HNYFDDSIFSYLNTLPSLCTLILHWNRI----EGSQTNQGICELKNLFEMNLERNFIGSP 209
           HN    S+     TLP+L  L + +NR+     G+        L  L E+ L+ N + + 
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-----LGELQELYLKGNELKTL 139

Query: 210 LITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNF----EGMFPLSSL 263
               L    +L+ L +++N L   LP+ +++ L +L+ L L  N+     +G F    L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 478
           L LS N      S + +     L  L+L               L  L  L   +N     
Sbjct: 36  LHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQL-NNL 535
           +     +  +L VLD+S N L+  +P   G      EL+ L +  N L+  +P  L    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 536 ERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593
            +L  L ++ N L+  P      L +++ L LQ+N+L   IP   F S  L    L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 10/182 (5%)

Query: 463 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522
                L+   N         L+  T L  L++    L+  +   +      L  L +S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHN 87

Query: 523 HLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFR 581
            L+ ++P+    L  L +LD+S NRL+  P+ +   L  ++ L L+ N L  L PG L  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-LLT 145

Query: 582 S-CKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639
              KL  L+L +N  +  +P  +     NL  LLL  N L   IP        L    L 
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLH 203

Query: 640 RN 641
            N
Sbjct: 204 GN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 50/183 (27%), Positives = 67/183 (36%), Gaps = 14/183 (7%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-KIKDGLLSSTSLQVLDISNNM 498
              +L LS N       +  M  TRL  L  +    +  ++   L     L  LD+S+N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL---PVLGTLDLSHNQ 88

Query: 499 LSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 556
           L   +P           L +L +S N L       L  L  L+ L +  N L       L
Sbjct: 89  LQ-SLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 557 -NLSSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 614
                +E LSL  N L  L P  L      L TL L++N+    IP        L F  L
Sbjct: 145 TPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 615 GGN 617
            GN
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
               R+T L+L   +LT ++  D G L  +  L+LS+N L  S+P     L  +  LD+S
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 789 YNKLTGQIPP----QLTALNFLSIFNVSYNNLS 817
           +N+LT  +P      L  L  L +     N L 
Sbjct: 109 FNRLT-SLPLGALRGLGELQELYL---KGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 50/212 (23%), Positives = 72/212 (33%), Gaps = 42/212 (19%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
               IL +S N L     + +   T L  L+L       +    +L     L  L LS  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV---LGTLDLS-- 85

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
                    N L +  L+   L                  L  LD+S N+L  + P   L
Sbjct: 86  --------HNQLQSLPLLGQTLPA----------------LTVLDVSFNRLT-SLPLGAL 120

Query: 338 RNNPKLEVLLLKNNSFS----GILQ-LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
           R   +L+ L LK N       G+L   PK     L  L ++ NN   +LP  +   L+ L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPK-----LEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 424
             + + +N     IP        L    L  N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 9e-11
 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 14/214 (6%)

Query: 87  VMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQ 146
           V+Q  L++   L           +++   +  L  L        Y S + A D +R+   
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 147 LKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFI 206
             +              Y +       L L    +        + +L  +  ++L  N +
Sbjct: 423 DDLRSKFLLENSVLKMEYADVR----VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRL 475

Query: 207 GSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH 266
            + L   L  L  L++L  S N L  ++   ++NL  L+ L L +N  +    +  L + 
Sbjct: 476 RA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 267 SKLEGLLLS----TRNNTLHVKTENWLPTSQLIV 296
            +L  L L      +   +  +    LP+   I+
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 42/209 (20%), Positives = 65/209 (31%), Gaps = 16/209 (7%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN--- 496
            L   +LS         SE  +   L+ L  EN      I   + +   L     +    
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 556
           + L    P            L   ++       V       +R+L ++   L+  +    
Sbjct: 409 STLKAVDPMR-------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLE 460

Query: 557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 616
            L  V HL L  N L   +P  L     L  L   DN     +   +     L+ LLL  
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCN 517

Query: 617 NHLQG-PIPDQLCQLQKLAMMDLSRNKFS 644
           N LQ       L    +L +++L  N   
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 796
           L L+   LT  +   + QL  +  L+LS+N L  ++P + + L+ +E L  S N L   +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 797 PPQLTALNFLSIFNVSYNNLS 817
              +  L  L    +  N L 
Sbjct: 502 DG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 3e-05
 Identities = 45/258 (17%), Positives = 77/258 (29%), Gaps = 38/258 (14%)

Query: 192 ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 251
              +  E  L ++              +L   ++S  +    L S + +   L+ L+  +
Sbjct: 324 GSDSQKECVLLKDRPEC-WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPEN 381

Query: 252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 311
                   L+ +     L+ LL            +   P     +  L    L       
Sbjct: 382 K----WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE-NSVL 436

Query: 312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 371
            +    ++ L L+H  L                           + QL       + HLD
Sbjct: 437 KMEYADVRVLHLAHKDLT----------------------VLCHLEQLL-----LVTHLD 469

Query: 372 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 431
           +S N  R  LP  +   L+ L  +  S N  E N+      +  L  L L  N      +
Sbjct: 470 LSHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAA 525

Query: 432 QSVVTGCFSLELLDLSNN 449
              +  C  L LL+L  N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 55/261 (21%), Positives = 88/261 (33%), Gaps = 58/261 (22%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG 153
           +T  L+  ++    L    F    ELQ LDLS                      +I  + 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--------------------EIQTIE 68

Query: 154 HNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGI-CELKNLFEMNLERNFIGSPLIT 212
              +          L  L TLIL  N I+      G    L +L ++      + S    
Sbjct: 69  DGAYQS--------LSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENF 118

Query: 213 CLKNLTRLKILDISSNQLNGSLPS--VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 270
            + +L  LK L+++ N +  S       SNLT+LE+LDLS N  +     + L    ++ 
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 271 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 330
            L L              L  + +  +                 +  LK L L  N+L  
Sbjct: 177 LLNL-----------SLDLSLNPMNFI-----------QPGAFKEIRLKELALDTNQLK- 213

Query: 331 NFPTWLLRNNPKLEVLLLKNN 351
           + P  +      L+ + L  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYF 470
           EL +LDLSR      +          L  L L+ N       G F      L+ L+ L  
Sbjct: 53  ELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAF----SGLSSLQKLVA 107

Query: 471 ENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKN---HL 524
              N +  +++  +    +L+ L++++N++          FS+   LE L +S N    +
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSI 164

Query: 525 EGNVPVQLNNLERLRI-LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 583
                  L+ +  L + LD+S N ++     +     ++ L+L  N L  +  G   R  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 584 KLVTLNLRDN 593
            L  + L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 16/173 (9%)

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVPVQL-NNLERLRILDI 543
            S + LD+S N L  H+     +F S  EL++L +S+  ++  +      +L  L  L +
Sbjct: 28  FSTKNLDLSFNPLR-HLGS--YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 544 SENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 602
           + N +    + +   LSS++ L   +  L  L    +     L  LN+  N        +
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 603 INEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAM-MDLSRNKFSGSIPP 649
              + +NL  L L  N +Q  I       L Q+  L + +DLS N  +  I P
Sbjct: 144 YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 5/144 (3%)

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQ 567
           N     + L +S N L         +   L++LD+S   +      +  +LS +  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQG-PIPD 625
            N +  L  G       L  L   +   +  + +    H   L+ L +  N +Q   +P+
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 626 QLCQLQKLAMMDLSRNKFSGSIPP 649
               L  L  +DLS NK   SI  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 18/197 (9%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDI 372
            K LDLS N L  +  ++   + P+L+VL L       I       L       L  L +
Sbjct: 30  TKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-----LSTLIL 83

Query: 373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 432
           + N  +  L       L  L  +   +        +  G +K L  L+++ N        
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 433 SVVTGCFSLELLDLSNNNF---EGQFFSEYMNLTRLR-HLYFENNNFSGKIKDGLLSSTS 488
              +   +LE LDLS+N               +  L   L    N  +  I+ G      
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 489 LQVLDISNNMLSGHIPH 505
           L+ L +  N L   +P 
Sbjct: 202 LKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 53/278 (19%), Positives = 86/278 (30%), Gaps = 80/278 (28%)

Query: 554 SSLNLSSV--------EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI-N 604
             LN   +        ++L L  N L  L     F   +L  L+L        I      
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ 73

Query: 605 EHSNLRFLLLGGNHLQ---GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGS 661
             S+L  L+L GN +Q         L  LQKL          + S+       L      
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKL---VAVETNLA-SLENFPIGHLK----- 124

Query: 662 DDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN 721
                   L    +          N   S  +   +  L+ LE                 
Sbjct: 125 -------TLKELNVAH--------NLIQSFKLPEYFSNLTNLEH---------------- 153

Query: 722 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI----GQLQAI-LALNLSNNSLSGSIPESF 776
                          LDLS N++   I         Q+  + L+L+LS N ++   P +F
Sbjct: 154 ---------------LDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 777 SNLKMIESLDISYNKLTGQIPPQ----LTALNFLSIFN 810
             +++ + L +  N+L   +P      LT+L  + +  
Sbjct: 198 KEIRL-KELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 45/261 (17%), Positives = 81/261 (31%), Gaps = 64/261 (24%)

Query: 538 LRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 596
            + LD+S N L    + S  +   ++ L L +  +  +  G       L TL L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 597 GRIPHQINEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMDLSRNKFSGSIPPCF 651
             +        S+L+ L+    +L   +       L  L++L   +++ N    S     
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKEL---NVAHNLIQ-SFK--- 140

Query: 652 ANVLSWRVGSDDVLNG-SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAID 710
                      +  +  + L    LD       L +N+  +      R L  +       
Sbjct: 141 ---------LPEYFSNLTNLE--HLD-------LSSNKIQSIYCTDLRVLHQMP------ 176

Query: 711 ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSG 770
                                     LDLS N +   I     +   +  L L  N L  
Sbjct: 177 ---------------------LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK- 213

Query: 771 SIPE-SFSNLKMIESLDISYN 790
           S+P+  F  L  ++ + +  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKLT 793
             LDLS N L             +  L+LS   +  +I +  + +L  + +L ++ N + 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 794 GQIPP----QLTALNFLSIFNVSYNNLS 817
             +       L++L  L        NL+
Sbjct: 90  -SLALGAFSGLSSLQKLVA---VETNLA 113

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 735 TGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKL 792
             LDLS  ++   I       L  +  L L+ N +  S+   +FS L  ++ L      L
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 793 TGQIPP----QLTALNFLSIFNVSYNNLS 817
              +       L  L  L   NV++N + 
Sbjct: 113 A-SLENFPIGHLKTLKEL---NVAHNLIQ 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
           T  ++  L+L   +    +      E  NL  ++L    + S  ++ L  L +LK L++S
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELS 79

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
            N++ G L  +   L +L +L+LS N  + +  L  L     L+ L L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 719 MKNRYEI-YNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESF 776
           MK R  +         V  L L   +   G+I     +   +  L+L N  L  S+  + 
Sbjct: 10  MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL 67

Query: 777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
             L  ++ L++S N++ G +      L  L+  N+S N L 
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 10/117 (8%)

Query: 458 EYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSS--EL 514
                  +R L  +N   +    +GL +   +L+ L + N  L       + N     +L
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPKL 73

Query: 515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP--IASSLNLSSVEHLSLQKN 569
           + L +S+N + G + +    L  L  L++S N+L     +     L  ++ L L   
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 33/140 (23%)

Query: 112 LFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSL 171
           L      L+ L L          + +  +L  L +LK L L  N     +      LP+L
Sbjct: 44  LTAEFVNLEFLSLINV------GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN--- 228
             L L  N+++         ++  L                 LK L  LK LD+ +    
Sbjct: 98  THLNLSGNKLK---------DISTL---------------EPLKKLECLKSLDLFNCEVT 133

Query: 229 QLNGSLPSVISNLTSLEYLD 248
            LN    SV   L  L YLD
Sbjct: 134 NLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 29/138 (21%)

Query: 215 KNLTRLKILDISSNQLN-GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
           +    ++ L + + + N G +  + +   +LE+L L +     +  L  L     L+ L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK---LKKLE 77

Query: 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 333
           LS   N                        + G          +L +L+LS NKL     
Sbjct: 78  LS--EN-----------------------RIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 334 TWLLRNNPKLEVLLLKNN 351
              L+    L+ L L N 
Sbjct: 113 LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 287 NWLPTSQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKL--VGNFPTWLLRNNPKL 343
                + +  L L  C  N G          +L++L L +  L  V N P       PKL
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKL 73

Query: 344 EVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 377
           + L L  N   G L +   K   L HL++S N  
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 161 IFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLT-R 219
           + + L+TL +   L L  N IE       +  ++NL  ++L RN I    I  L  +   
Sbjct: 40  MDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKK--IENLDAVADT 94

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           L+ L IS NQ+  +  S I  L +L  L +S+N       +  LA   KLE LLL+
Sbjct: 95  LEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 57/178 (32%)

Query: 174 LILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGS 233
           L      IE       +  LK    + L  N I    I+ L  +  L+IL +  N +   
Sbjct: 30  LHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIK-K 84

Query: 234 LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQ 293
           + ++ +   +LE L +S+N    +  +  L                              
Sbjct: 85  IENLDAVADTLEELWISYNQIASLSGIEKL------------------------------ 114

Query: 294 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 351
                                  +L+ L +S+NK+        L    KLE LLL  N
Sbjct: 115 ----------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 10/161 (6%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ-LNNLERLRILDIS 544
            +   +LD+S+N LS     W     + L  L +S NHL   +  +    +  LR LD+S
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 545 ENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQ 602
            N L         +L ++E L L  N +  ++    F    +L  L L  N  S R P +
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 603 INEH----SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639
           + +       L  L L  N L+      L +L       L 
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 41/189 (21%), Positives = 67/189 (35%), Gaps = 39/189 (20%)

Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTL 174
               LDLS N  +   ++ A  +   L  L  L+L HN   +     F     +P+L  L
Sbjct: 40  YTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYL 93

Query: 175 ILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL 234
            L  N +                   L+             +L  L++L + +N +    
Sbjct: 94  DLSSNHLH-----------------TLDEFL--------FSDLQALEVLLLYNNHIVVVD 128

Query: 235 PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL-LLSTRNN---TLHVKTENWLP 290
            +   ++  L+ L LS N     FP+  + + +KL  L LL   +N    L +     LP
Sbjct: 129 RNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 291 TSQLIVLGL 299
                 L L
Sbjct: 188 AWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 21/182 (11%)

Query: 226 SSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH-VK 284
           S  QL  ++P  +   +    LDLSHNN   +    +    + L  LLLS  +N L+ + 
Sbjct: 26  SKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS--HNHLNFIS 80

Query: 285 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE 344
           +E ++P   L  L L+  +L+            L+ L L +N +V         +  +L+
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 345 VLLLKNN--------SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 396
            L L  N              +LPK     L  LD+S N  + KLP      L   +   
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPK-----LMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193

Query: 397 IS 398
           + 
Sbjct: 194 LY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 42/193 (21%)

Query: 440 SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDI 494
              LLDLS+NN          +    LT L  L   +N+ +  I         +L+ LD+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIA 553
           S+N L                        L+  +    ++L+ L +L +  N +      
Sbjct: 96  SSNHLH----------------------TLDEFL---FSDLQALEVLLLYNNHIVVVDRN 130

Query: 554 SSLNLSSVEHLSLQKNALNGLIPGELFRSC----KLVTLNLRDNTFSGRIPHQINEHSNL 609
           +  +++ ++ L L +N ++   P EL +      KL+ L+L  N         + +    
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189

Query: 610 --RFLLLGGNHLQ 620
               L L  N L+
Sbjct: 190 VKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLP 169
              L  L SL LS N   + S     ++   +  L+ L L  N     D+ +FS L    
Sbjct: 60  PTRLTNLHSLLLSHNHLNFISS----EAFVPVPNLRYLDLSSNHLHTLDEFLFSDL---Q 112

Query: 170 SLCTLILHWNRIEGSQTN--QGICELKNLFEMNLERNFIGS---PLITCLKNLTRLKILD 224
           +L  L+L+ N I     N  + + +L+ L    L +N I      LI     L +L +LD
Sbjct: 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKL---YLSQNQISRFPVELIKDGNKLPKLMLLD 169

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLS-HNN 253
           +SSN+L     + +  L +     L  HNN
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 41/191 (21%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLD 371
           +   LDLSHN L      W       L  LLL +N  + I     + +P      L +LD
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-----LRYLD 94

Query: 372 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 431
           +S N+    L   +   LQ L  + +  N                 ++ + RN F   ++
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNN----------------HIVVVDRNAFE-DMA 136

Query: 432 QSVVTGCFSLELLDLSNNN---FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL--LSS 486
           Q        L+ L LS N    F  +   +   L +L  L   +N         L  L +
Sbjct: 137 Q--------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 487 TSLQVLDISNN 497
                L + NN
Sbjct: 189 WVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 737 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTG 794
           LDLS N L   +   +   LQA+  L L NN +   +   +F ++  ++ L +S N+++ 
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 795 QIPPQ----LTALNFLSIFNVSYNNLS 817
           + P +       L  L + ++S N L 
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 538 LRILDISENRLS--GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNT 594
             +LD+S N LS      +   L+++  L L  N LN  I  E F     L  L+L  N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 595 FSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
               +   +      L  LLL  NH+     +    + +L  + LS+N+ S   P 
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 734 VTGLDLSCNQLTGEIPSDI--GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYN 790
              LDLS N L+  + ++    +L  + +L LS+N L+  I   +F  +  +  LD+S N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 791 KLTGQIPPQ----LTALNFLSIFNVSYNNLS 817
            L   +       L AL  L +     N++ 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLL---YNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 554 SSLNLSSV--------EHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQIN 604
           S   L +V          L L  N L+ L           L +L L  N  +  I  +  
Sbjct: 26  SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAF 84

Query: 605 EH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 649
               NLR+L L  NHL          LQ L ++ L  N     +  
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDR 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDIS 226
           T   +  L+L  +R    +      E + L  ++     + S  I  L  L +LK L++S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
            N+++G L  +     +L +L+LS N  + +  +  L     L+ L L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 461 NLTRLRHLYFENNNFS-GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEIL 517
             + ++ L  +N+  + GK++        L+ L   N  L+      + N     +L+ L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 518 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGP--IASSLNLSSVEHLSLQKN 569
            +S N + G + V       L  L++S N++     I     L +++ L L   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 719 MKNRYE-IYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESF 776
           M  R          + V  L L  ++   G++     + + +  L+  N  L+ SI  + 
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL 60

Query: 777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
             L  ++ L++S N+++G +         L+  N+S N + 
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 36/143 (25%), Positives = 48/143 (33%), Gaps = 33/143 (23%)

Query: 109 NMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTL 168
              L    EEL+ L       T    +    +L  L +LK L L  N     +       
Sbjct: 34  LEGLTDEFEELEFLSTINVGLT---SI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSN 228
           P+L  L L  N+I+         +L                 I  LK L  LK LD+ + 
Sbjct: 88  PNLTHLNLSGNKIK---------DLST---------------IEPLKKLENLKSLDLFNC 123

Query: 229 ---QLNGSLPSVISNLTSLEYLD 248
               LN    +V   L  L YLD
Sbjct: 124 EVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 215 KNLTRLKILDISSNQLN-GSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 273
           +  + +K L + +++ N G L  +      LE+L   +     +  L  L     L+ L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK---LKKLE 70

Query: 274 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFP 333
           LS  +N                        ++G          +L +L+LS NK+     
Sbjct: 71  LS--DN-----------------------RVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 334 TWLLRNNPKLEVLLLKNN 351
              L+    L+ L L N 
Sbjct: 106 IEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
            ++++ L +LD S +        +     +E LS     L  +    L +  KL  L L 
Sbjct: 16  PSDVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 592 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRN 641
           DN  SG +     +  NL  L L GN ++     + L +L+ L  +DL   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 295 IVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL--VGNFPTWLLRNNPKLEVLLLKNNS 352
           +VL  ++ N  G           L++L   +  L  + N P        KL+ L L +N 
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKLELSDNR 75

Query: 353 FSGILQLPKAKHDFLHHLDISCNNFR 378
            SG L++   K   L HL++S N  +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 66/372 (17%), Positives = 120/372 (32%), Gaps = 40/372 (10%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLG--HNYFDDSIFSYL-NTLPSLCTLI 175
           L+ LDL  +     S         +   L  L +    +    S    L    P+L +L 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 176 LHWNR-----IEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQL 230
           L+            Q    + EL         R  + S L   L     L+ L    + +
Sbjct: 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 231 NGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR--NNTLHVKTENW 288
              LP+V S  + L  L+LS+   +    +  L    KL+ L +     +  L V     
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
                L  L +         P+  L +  L                 +    PKLE +L 
Sbjct: 338 ---KDLRELRVFPSEPFVMEPNVALTEQGLVS---------------VSMGCPKLESVLY 379

Query: 349 KNNSFS--GILQL----PKAKHDFLHHLDISCNNFRGKLPHNMGVI-----LQKLMYMDI 397
                +   ++ +    P      L  ++    ++    P ++G        + L  + +
Sbjct: 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

Query: 398 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF-EGQFF 456
           S    +    Y     K++ +L ++    S      V++GC SL  L++ +  F +    
Sbjct: 440 SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 457 SEYMNLTRLRHL 468
           +    L  +R L
Sbjct: 500 ANASKLETMRSL 511

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 62/508 (12%), Positives = 149/508 (29%), Gaps = 59/508 (11%)

Query: 160 SIFSYLNTLPSLCTLIL---HWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL-- 214
            +FS++       ++ L    W  IE     +    + N + ++        P +  +  
Sbjct: 16  HVFSFIQLDKDRNSVSLVCKSWYEIERWCRRK--VFIGNCYAVSPATVIRRFPKVRSVEL 73

Query: 215 ---KNLTRLKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNF--EGMFPLSSLANHSK 268
               +     ++           + ++ S+ T LE + L       + +  ++   +   
Sbjct: 74  KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA--KSFKN 131

Query: 269 LEGLLLSTRNNTLHVKTENWLPT-----SQLIVLGLTKCNLNGSYPDFLLH----QYHLK 319
            + L+LS+        + + L         L  L L + +++     +L H       L 
Sbjct: 132 FKVLVLSSCEGF----STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 320 YLDLS--HNKLVGNFPTWLLRNNPKLEVLLLKNNS-----FSGILQLPKAKHDFLHHLDI 372
            L++S   +++  +    L+   P L+ L L          + + + P+ +         
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ 432
                            ++L  +    +     +P        L+ L+LS          
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS------- 485
            ++  C  L+ L + +   +            LR L    +       +  L+       
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367

Query: 486 ---STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN--------- 533
                 L+ +      ++      +      +    +     +    + L          
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 534 --NLERLRILDISENR-LSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLN 589
             + + LR L +S                 +E LS+     + L    +   C  L  L 
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487

Query: 590 LRDNTFSGR-IPHQINEHSNLRFLLLGG 616
           +RD  F  + +    ++   +R L +  
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 56/397 (14%), Positives = 119/397 (29%), Gaps = 68/397 (17%)

Query: 240 NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGL 299
            +       +   N   + P + +    K+  + L  +    H    N +P      +  
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKP---HFADFNLVPDGWGGYVYP 95

Query: 300 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF---SGI 356
               ++ SY         L+ + L    +  +    + ++    +VL+L +       G+
Sbjct: 96  WIEAMSSSYT-------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148

Query: 357 LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKEL 416
             +       L  LD+  ++                   D+S +    + P +   +  L
Sbjct: 149 AAIAATCR-NLKELDLRESDVD-----------------DVSGHWLS-HFPDTYTSLVSL 189

Query: 417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 476
           ++  L+       L + +VT C +L+ L L+      +  +      +L  L        
Sbjct: 190 NISCLASEVSFSAL-ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG------- 241

Query: 477 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 536
                      + +V     + LS  +         EL  LS   + +   +P   +   
Sbjct: 242 -------TGGYTAEVRPDVYSGLSVALSG-----CKELRCLSGFWDAVPAYLPAVYSVCS 289

Query: 537 RLRILDISENRLS--GPIASSLNLSSVEHLSLQKNA-LNGLIPGELFRSCK-LVTLNLRD 592
           RL  L++S   +     +        ++ L +       GL    L  +CK L  L +  
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE--VLASTCKDLRELRVFP 347

Query: 593 -NTFSGRIPHQINEHS---------NLRFLLLGGNHL 619
              F       + E            L  +L     +
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 54/293 (18%), Positives = 87/293 (29%), Gaps = 51/293 (17%)

Query: 112 LFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS----IFSYL-N 166
           L      L  ++L+               L    + + L L  N         +   L +
Sbjct: 96  LGSGRHALDEVNLASCQLDPA---GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152

Query: 167 TLPSLCTLILHWNRIEGSQTNQGICEL-------KNLFEMNLERNFIGSP----LITCLK 215
               + TL L  N +    T  G+  L        ++  ++L    +G      L   L 
Sbjct: 153 DQCQITTLRLSNNPL----TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208

Query: 216 NLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNF--EGMFPLSSL--ANHS 267
              +L+ L+++ N    +    L        SLE L L  N    EG   L  L  A   
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG 268

Query: 268 KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 327
               ++  T    +   +E W       +L   + NLN      +     L   DL  ++
Sbjct: 269 GARVVVSLTEGTAV---SEYWSV-----ILSEVQRNLNSWDRARVQRHLELLLRDLEDSR 320

Query: 328 LVGNFPTW----LLRNNPKLEVLLLKNNSFS--GILQLPKA-----KHDFLHH 369
                  W    LLR   ++  LL +  S                  H   HH
Sbjct: 321 -GATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHHH 372

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 61/397 (15%), Positives = 114/397 (28%), Gaps = 84/397 (21%)

Query: 257 MFPLSSLANHSKLEGLLLSTRNNT-----------LHVKTENWLPTSQLIVLGLTKCNLN 305
           +  L S  N + L  L    +N             L       LP S+L+          
Sbjct: 3   LVGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQ 62

Query: 306 GSYPDFLLH-QYHLKYLDLSHNKL----VGNFPTWLLRNNPKLEVLLLKNNSFS--GILQ 358
                F       L+ L+L+  ++           L      L+ + L +      G+  
Sbjct: 63  NQ--RFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT 120

Query: 359 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL 418
           L          L +  N+   +         + L  + +   C             +++ 
Sbjct: 121 LLPVFLR-ARKLGLQLNSLGPE-----AC--KDLRDLLLHDQC-------------QITT 159

Query: 419 LDLSRNYFSGG----LSQSVVTGCFSLELLDLSNNNFE---GQFFSEYM-NLTRLRHLYF 470
           L LS N  +      L + +     S+  L L +        +  +  +    +L+ L  
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 471 ENNNFSGK----IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 526
             N         +        SL++L +  N LS          S   ++L       EG
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS----------SEGRQVLRDLGGAAEG 268

Query: 527 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV 586
              V ++  E   + +     LS                +Q+N LN      + R  +L+
Sbjct: 269 GARVVVSLTEGTAVSEYWSVILS---------------EVQRN-LNSWDRARVQRHLELL 312

Query: 587 TLNLRDNTFS----GRIPHQINEHSNLRFLLLGGNHL 619
             +L D+  +     R    +     +R LL      
Sbjct: 313 LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 44/245 (17%), Positives = 78/245 (31%), Gaps = 34/245 (13%)

Query: 139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICEL----- 193
             L   + L  L   + + +    + + +  SL  L L   R+   +    +  +     
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLS--SLRQLNLAGVRMTPVKC-TVVAAVLGSGR 100

Query: 194 KNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLN----GSLPSVI-SNLTSLEYL 247
             L E+NL    +    L T L    R + L +  N L       L  ++  +   +  L
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 248 DLSHNNF--EGMFPLSS-LANHSKLEGLLLSTRNNTLHVKTENWL-----PTSQLIVLGL 299
            LS+N     G+  L   LA ++ +  L L   +  L  +    L        QL  L +
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL--HTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 300 TKCNLNGSY----PDFLLHQYHLKYLDLSHNKLVGNFPTWL------LRNNPKLEVLLLK 349
                  +              L+ L L  N+L       L           ++ V L +
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278

Query: 350 NNSFS 354
             + S
Sbjct: 279 GTAVS 283

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 51/329 (15%), Positives = 98/329 (29%), Gaps = 70/329 (21%)

Query: 193 LKNLFEMNLERNFIGSPLITCL-----KNLTRLKILDISSNQLNG-SLPSVISNLTSLEY 246
           L +L ++NL    +     T +          L  ++++S QL+   L +++        
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 247 LDLSHNNF--EGMFPLSSL--ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKC 302
           L L  N+   E    L  L   +  ++  L LS  NN L            +++ GL   
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS--NNPLTAAG------VAVLMEGLAGN 182

Query: 303 NLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL---LRNNPKLEVLLLKNNSF--SGIL 357
                          + +L L H  L       L   L  N +L+ L +  N    +  L
Sbjct: 183 T-------------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229

Query: 358 QLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKE 415
            L +A  +H  L  L +  N        + G   Q L  +  +                 
Sbjct: 230 ALARAAREHPSLELLHLYFNELS-----SEGR--QVLRDLGGAAEG-----------GAR 271

Query: 416 LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 475
           + +        S             L  +  + N+++      ++ L        E++  
Sbjct: 272 VVVSLTEGTAVSEY-------WSVILSEVQRNLNSWDRARVQRHLELLLRDL---EDSRG 321

Query: 476 S----GKIKDGLLSSTSLQVLDISNNMLS 500
           +     +    L     ++ L        
Sbjct: 322 ATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 12/137 (8%)

Query: 116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI 175
               + LDL          +       +L Q   +    N            L  L TL+
Sbjct: 18  AVRDRELDLRGYKIPVIENL-----GATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL-ITCLKNLTRLKILDISSN---QLN 231
           ++ NRI           L +L E+ L  N +     +  L +L  L  L I  N      
Sbjct: 71  VNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

Query: 232 GSLPSVISNLTSLEYLD 248
                VI  +  +  LD
Sbjct: 130 HYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD 224
                    L L   +I           L     ++   N I    +     L RLK L 
Sbjct: 15  YTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
           +++N++      +   L  L  L L++N+   +  L  LA+   L  L + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 32/152 (21%)

Query: 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 503
           + L+    E    ++Y N  R R L          I++   +      +D S+N +    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-- 56

Query: 504 PHWMGNFSS--ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSV 561
              +  F     L+ L ++ N +          L  L  L ++ N L         L  +
Sbjct: 57  ---LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-------ELGDL 106

Query: 562 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 593
           + L+  K+               L  L +  N
Sbjct: 107 DPLASLKS---------------LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 33/154 (21%)

Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
           + L    I         N  R + LD+   ++   + ++ + L   + +D S N    + 
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 318
               L    +L+ LL++  NN                        +             L
Sbjct: 59  GFPLL---RRLKTLLVN--NN-----------------------RICRIGEGLDQALPDL 90

Query: 319 KYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNN 351
             L L++N L         L +   L  L +  N
Sbjct: 91  TELILTNNSL-VELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 531 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 590
           Q  N  R R LD+   ++         L   + +    N +  L         +L TL +
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71

Query: 591 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRN 641
            +N              +L  L+L  N L      D L  L+ L  + + RN
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIE 783
           +    +N  R   LDL   ++   I +    L    A++ S+N +   + + F  L+ ++
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLK 67

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
           +L ++ N++         AL  L+   ++ N+L 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNN 474
           LDL  N  S  L          L LL L++N       G F      L  L  L+  +N 
Sbjct: 42  LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNK 96

Query: 475 FS---GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS--ELEILSMSKNHLEGNVP 529
                  + D L    +L  L +  N L   +P     F S  +L  LS+  N L+ ++P
Sbjct: 97  LQALPIGVFDQL---VNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 530 VQL-NNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 587
             + + L  L+ L +  N+L   P  +   L+ ++ L L  N L  +  G      KL  
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 588 LNLRDN 593
           L L++N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 39/174 (22%), Positives = 60/174 (34%), Gaps = 29/174 (16%)

Query: 91  SLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSL-----RSLK 145
            L     L    +    L   +F  L+ L++L ++ N            +L       L 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ---------ALPIGVFDQLV 109

Query: 146 QLKILVLGHN---YFDDSIFSYLNTLPSLCTLILHWNRI----EGSQTNQGICELKNLFE 198
            L  L L  N        +F   ++L  L  L L +N +    +G         L +L E
Sbjct: 110 NLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQSLPKGVFDK-----LTSLKE 161

Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252
           + L  N +          LT LK L + +NQL         +L  L+ L L  N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 18/189 (9%)

Query: 94  NTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQL-----K 148
           +T +L+   +    L    FH L +L+ L L+ N          +  L++L+ L     K
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNK 96

Query: 149 ILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIG 207
           +  L    FD         L +L  L L  N+++       + + L  L  ++L  N + 
Sbjct: 97  LQALPIGVFDQ--------LVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQ 146

Query: 208 SPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHS 267
           S        LT LK L + +NQL          LT L+ L L +N  +   P  +  +  
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 268 KLEGLLLST 276
           KL+ L L  
Sbjct: 206 KLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQ 567
           N  ++ + L +  N L        + L +LR+L +++N+L   P      L ++E L + 
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIP-- 624
            N L  L  G   +   L  L L  N     +P ++ +  + L +L LG N LQ  +P  
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKG 151

Query: 625 --DQLCQLQKLAMMDLSRNKFSGSIPP 649
             D+L  L++L    L  N+    +P 
Sbjct: 152 VFDKLTSLKEL---RLYNNQLK-RVPE 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 31/194 (15%)

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-----LQLPKAKHDFLHHLDI 372
            K LDL  NKL  + P+       KL +L L +N    +      +L       L  L +
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-----LETLWV 92

Query: 373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLS 431
           + N  +  LP  +   L  L  + + +N  + ++P      + +L+ L L  N       
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL----- 145

Query: 432 QSVVTGCF----SLELLDLSNNNF----EGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL 483
           QS+  G F    SL+ L L NN      EG F      LT L+ L  +NN      +   
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF----DKLTELKTLKLDNNQLKRVPEGAF 201

Query: 484 LSSTSLQVLDISNN 497
            S   L++L +  N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 735 TGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKL 792
             L ++ N+L   +P  +  QL  +  L L  N L  S+P   F +L  +  L + YN+L
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 793 TGQIPP----QLTALNFLSIFN 810
              +P     +LT+L  L ++N
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYN 166

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 18/222 (8%)

Query: 165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIG-SPLITCLKNLTRLKIL 223
              L S   +     R    Q          +  M+L  + I  S L   L   ++L+ L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 224 DISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH-SKLEGLLLS-----TR 277
            +   +L+  + + ++  ++L  L+LS  +    F L +L +  S+L+ L LS     T 
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLN---GSYPDFLLHQYHLKYLDLSHNKLVGNFPT 334
            +           +  +  L L+    N         +    +L +LDLS + ++ N   
Sbjct: 184 KHVQVAVAHV---SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240

Query: 335 WLLRNNPKLEVLLLKNNSF---SGILQLPKAKHDFLHHLDIS 373
                   L+ L L          +L+L +     L  L + 
Sbjct: 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT--LKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 45/241 (18%), Positives = 90/241 (37%), Gaps = 13/241 (5%)

Query: 145 KQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERN 204
           + +       ++ D  +  +  +   +  + L  + IE S  +  + +   L  ++LE  
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128

Query: 205 FIGSPLITCLKNLTRLKILDISSNQL--NGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS 262
            +  P++  L   + L  L++S        +L +++S+ + L+ L+LS         +  
Sbjct: 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188

Query: 263 LANHS--KLEGLLLSTRNNTLHVKTENWLPTS--QLIVLGLTKC-NLNGSYPDFLLHQYH 317
              H    +  L LS     L     + L      L+ L L+    L            +
Sbjct: 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248

Query: 318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVL-LLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
           L++L LS    +       L   P L+ L +        +  L +A    L HL I+C++
Sbjct: 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA----LPHLQINCSH 304

Query: 377 F 377
           F
Sbjct: 305 F 305

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 20/222 (9%)

Query: 291 TSQLIVLGLTKCNLNGSYPDFLLHQY----HLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
           T +L+  G+       S+ D  L ++     ++++DLS++ +  +    +L    KL+ L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 347 LLKNNSFSGILQLPKAKHDFLHHLDIS-CNNFRGKLPHNMGVILQKLMYMDISK------ 399
            L+    S  +    AK+  L  L++S C+ F       +     +L  +++S       
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183

Query: 400 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN-NNFEGQFFSE 458
              +  + + +  + +L+L    +N     L  ++V  C +L  LDLS+    +   F E
Sbjct: 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQE 242

Query: 459 YMNLTRLRHLYFENNNFSGKIKDGLLSS----TSLQVLDISN 496
           +  L  L+HL          I    L       +L+ L +  
Sbjct: 243 FFQLNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQVFG 281

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 440 SLELLDLSNNNFEG-QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNN 497
               L L+NN F   +    +  L +LR + F NN  +  I++G     + +  + +++N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSL 556
            L   + H M      L+ L +  N +          L  +R+L + +N++ +    +  
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 557 NLSSVEHLSLQKNALN 572
            L S+  L+L  N  N
Sbjct: 151 TLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 468 LYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHL 524
           L   NN F+     G+      L+ ++ SNN ++  I    G F   S +  + ++ N L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRL 93

Query: 525 EGNVPVQL-NNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRS 582
           E NV  ++   LE L+ L +  NR++     S + LSSV  LSL  N +  + PG     
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 583 CKLVTLNLRDN 593
             L TLNL  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 26/146 (17%)

Query: 120 QSLDLSVNIFTYDSKVAAYDSLRSLKQL-----KILVLGHNYFDDSIFSYLNTLPSLCTL 174
             L L+ N FT       +  L  L+++     KI  +    F+            +  +
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASGVNEI 86

Query: 175 ILHWNRIEGSQTNQGICE-LKNLFEMNLERNFIGSPLITCL-----KNLTRLKILDISSN 228
           +L  NR+E  Q    + + L++L  + L  N      ITC+       L+ +++L +  N
Sbjct: 87  LLTSNRLENVQH--KMFKGLESLKTLMLRSN-----RITCVGNDSFIGLSSVRLLSLYDN 139

Query: 229 QLNGSLPSVISNLTSLEYLDLSHNNF 254
           Q+    P     L SL  L+L  N F
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 46/95 (48%), Gaps = 12/95 (12%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLD 786
             + ++  ++ S N++T +I          +  + L++N L  ++    F  L+ +++L 
Sbjct: 54  KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 787 ISYNKLTGQIPP----QLTALNFLSIFNVSYNNLS 817
           +  N++T  +       L+++  LS+++   N ++
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYD---NQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 20/110 (18%)

Query: 554 SSLNLSSV--------EHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQIN 604
           S+  L+ +          L L  N    L    +F+   +L  +N  +N  +  I     
Sbjct: 19  SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF 77

Query: 605 EH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMDLSRNKFSGSIPP 649
           E  S +  +LL  N L+  +       L  L+ L    L  N+ +  +  
Sbjct: 78  EGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL---MLRSNRIT-CVGN 122

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 10/160 (6%)

Query: 527 NVPVQLNNLERLRILDISENRLSGPIASS--LNLSSVEHLSLQKNALNGLIPGELFRSC- 583
           +    L   E L  L I   +    +       L  + +L++ K+ L   +  + F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 584 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643
           +L  LNL  N     +  +  +  +L+ L+L GN L        C L+ L   +      
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGG 134

Query: 644 SGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS 683
                             +       L     +  ++ G 
Sbjct: 135 VPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 26/113 (23%)

Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 519
               L  LY EN      ++   L     L+ L I  + L   +                
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA--------------- 72

Query: 520 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 572
                    P   +   RL  L++S N L      ++   S++ L L  N L+
Sbjct: 73  ---------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 169 PSLCT----LILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL-----KNLTR 219
           P  C       L   R     +   +   +NL E+ +E        +  L     + L  
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ----QHLQHLELRDLRGLGE 57

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF----EGMFPLSSL 263
           L+ L I  + L    P        L  L+LS N             SL
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL 105

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE----GQFFSEYM 460
           +  +     + L+ L +        L    + G   L  L +  +         F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF----H 77

Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
              RL  L    N     +    +   SLQ L +S N L
Sbjct: 78  FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 747 EIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ-LTALN 804
           +    +   + +  L + N      +       L  + +L I  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 805 FLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 841
            LS  N+S+N L   +    Q  +  E    GNP  C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 27/127 (21%)

Query: 227 SNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE 286
           +          +    +L  L + +        L  L     L GL              
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQ-----HLQHLELRD-LRGL-------------- 55

Query: 287 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
                 +L  L + K  L    PD       L  L+LS N L       +      L+ L
Sbjct: 56  -----GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLSLQEL 108

Query: 347 LLKNNSF 353
           +L  N  
Sbjct: 109 VLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 733 RVTGLDLSCNQLTGEIPS-DIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK 791
            +T L +   Q    +   D+  L  +  L +  + L    P++F     +  L++S+N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 792 LTGQIPPQLTALNFLSIFNVSYNNL 816
           L   +  +      L    +S N L
Sbjct: 92  LE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 309 PDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF-- 366
              L    +L  L + + + + +     LR   +L  L +  +    +     A   F  
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-----APDAFHF 78

Query: 367 ---LHHLDISCNNFRGKLPHNM 385
              L  L++S N     L    
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKT 99

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 468 LYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHL 524
           +  E N     I  G  S    L+ +D+SNN +S  +      F     L  L +  N +
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKI 92

Query: 525 EGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSC 583
                     L  L++L ++ N+++   + +  +L ++  LSL  N L  +  G      
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 584 KLVTLNLRDN 593
            + T++L  N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 49/198 (24%)

Query: 69  PSDCCHWQRVKCNATTGRVMQLSLK--------NTTRLNYPYDWFPLLNMSLFHPLEELQ 120
           P+ C       C+          L           T +    +   ++    F P ++L+
Sbjct: 6   PAAC------TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLR 59

Query: 121 SLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHN---YFDDSIFSYLNTLPSLCTLILH 177
            +DLS N  +      A D+ + L+ L  LVL  N       S+F     L SL  L+L+
Sbjct: 60  RIDLSNNQISE----LAPDAFQGLRSLNSLVLYGNKITELPKSLF---EGLFSLQLLLLN 112

Query: 178 WNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
            N+I         C   + F+                 +L  L +L +  N+L       
Sbjct: 113 ANKIN--------CLRVDAFQ-----------------DLHNLNLLSLYDNKLQTIAKGT 147

Query: 238 ISNLTSLEYLDLSHNNFE 255
            S L +++ + L+ N F 
Sbjct: 148 FSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 38/151 (25%)

Query: 120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWN 179
             + L  N        A        K+L+ + L +N         ++ L           
Sbjct: 35  TEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQ--------ISELAP--------- 73

Query: 180 RIEGSQTNQGICE-LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-V 237
                       + L++L  + L  N I     +  + L  L++L +++N++N  L    
Sbjct: 74  ---------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDA 123

Query: 238 ISNLTSLEYLDLSHNNF----EGMF-PLSSL 263
             +L +L  L L  N      +G F PL ++
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 12/95 (12%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPES-FSNLKMIESLD 786
           S   ++  +DLS NQ++ E+  D    L+++ +L L  N ++  +P+S F  L  ++ L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 787 ISYNKLTGQIPPQ----LTALNFLSIFNVSYNNLS 817
           ++ NK+   +       L  LN LS+++   N L 
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYD---NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQ 567
           N    +  + + +N ++   P   +  ++LR +D+S N++S     +   L S+  L L 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 568 KNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPD 625
            N +  L P  LF     L  L L  N  +  +     +   NL  L L  N LQ     
Sbjct: 89  GNKITEL-PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 626 QLCQLQKLAMMDLSRN 641
               L+ +  M L++N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 69  PSDC-CHWQRVKC--NATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLS 125
           P D      +      + T  V Q  L +  ++        + ++     L  ++ L L 
Sbjct: 14  PDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNS--DIKSVQGIQYLPNVRYLALG 71

Query: 126 VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYF---DDSIFSYLNTLPSLCTLILHWNRIE 182
            N       ++A   L     L  L+L  N      + +F  L  L     L+L  N+++
Sbjct: 72  GNKLH---DISALKEL---TNLTYLILTGNQLQSLPNGVFDKLTNLK---ELVLVENQLQ 122

Query: 183 GSQTNQGIC-ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISN 240
                 G+  +L NL  +NL  N + S        LT L  LD+S NQL  SLP  V   
Sbjct: 123 --SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 241 LTSLEYLDLSHN 252
           LT L+ L L  N
Sbjct: 180 LTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 25/173 (14%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
                  ++    ++  +     N  + ++ +  + + ++ +V   +  L  +R L +  
Sbjct: 18  FAETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGG 72

Query: 546 NRLSGPIASSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 601
           N+L       +     L+++ +L L  N L  L  G   +   L  L L +N     +P 
Sbjct: 73  NKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 602 QINEH-SNLRFLLLGGNHLQGPIP----DQLCQLQKLAMMDLSRNKFSGSIPP 649
            + +  +NL +L L  N LQ  +P    D+L  L +L   DLS N+   S+P 
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTEL---DLSYNQLQ-SLPE 174

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKL 792
           VT L L  NQ T  +P ++   + +  ++LSNN +S ++   SFSN+  + +L +SYN+L
Sbjct: 33  VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

Query: 793 TGQIPP----QLTALNFLSIFNVSYNNLS 817
              IPP     L +L  LS+     N++S
Sbjct: 91  R-CIPPRTFDGLKSLRLLSLHG---NDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHNNFEG 256
           E+ L+ N     +   L N   L ++D+S+N+++ +L +   SN+T L  L LS+N    
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR--- 89

Query: 257 MFPLSSLANH--SKLEGL-LLSTRNNTL 281
              L  +       L+ L LLS   N +
Sbjct: 90  ---LRCIPPRTFDGLKSLRLLSLHGNDI 114

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 140 SLRSLKQLKILVLGHNYFDDSIFSYLNT--LPSLCTLILHW--NRIEGSQTNQGICEL-- 193
             +    LK L +      DS+   +    LP+L  L+L+                 L  
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 194 ----KNLFEMNLERNFIGSPLITCL---KNLTRLKILDISSNQLNGS----LPSVISNLT 242
                NL  + +      + ++        L +L+ +DIS+  L       L   +  + 
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 243 SLEYLDLSHNNF 254
            L+++++ +N  
Sbjct: 308 HLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 40/321 (12%), Positives = 93/321 (28%), Gaps = 38/321 (11%)

Query: 260 LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 319
            SS     K  G L++ +    +V+T   +     +       + + +     L    LK
Sbjct: 43  FSSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILK 102

Query: 320 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 379
              L   K +          +       +  N      +    +  F   +D        
Sbjct: 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENK----EKFAHFEGLFWGDIDFEEQEISW 158

Query: 380 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 439
               ++  +L  +  ++  K     N+         L  L++        + + ++    
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 440 -SLELLDLS--NNNFEG-------QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--- 486
            +LE L L     ++         +          L+ L   +      + +  L S   
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 546
             L+ +DIS  +L+               +L              ++ ++ L+ +++  N
Sbjct: 279 PQLETMDISAGVLT----------DEGARLLLDH-----------VDKIKHLKFINMKYN 317

Query: 547 RLSGPIASSLNLSSVEHLSLQ 567
            LS  +   L  S    + + 
Sbjct: 318 YLSDEMKKELQKSLPMKIDVS 338

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 148 KILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGI-CELKNLFEMNLERNFI 206
           + L L          +    L  L  L L +N++     + G+  +L  L  + L  N +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL 95

Query: 207 GSPLITCLKNLTRLKILDISSNQLNGSLPS-VISNLTSLEYLDLSHN 252
            S  +    +LT+L  L +  NQL  SLPS V   LT L+ L L+ N
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	933
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.53

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-91  Score=856.58  Aligned_cols=716  Identities=31%  Similarity=0.458  Sum_probs=575.9

Q ss_pred             CCCCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcccceeEecCCCCcEEEEecCCCCCCCCCCC
Q 002350           24 GYKACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYD  103 (933)
Q Consensus        24 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~  103 (933)
                      +++.+.++||+|||+||+++.++      . .+++| +.+      ++||+|+||+|+  +|||++++|++...   .|.
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~------~-~l~~W-~~~------~~~C~w~gv~C~--~~~v~~L~L~~~~l---~g~   65 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDK------N-LLPDW-SSN------KNPCTFDGVTCR--DDKVTSIDLSSKPL---NVG   65 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCT------T-SSTTC-CTT------SCGGGSTTEEEE--TTEEEEEECTTSCC---CEE
T ss_pred             ccccCCHHHHHHHHHHHhhCCCc------c-cccCC-CCC------CCCcCCcceEEC--CCcEEEEECCCCCc---CCc
Confidence            34566899999999999999643      4 89999 644      689999999998  69999999998764   332


Q ss_pred             CcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchh--hhcCCCCCCEEecCCCcc
Q 002350          104 WFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFS--YLNTLPSLCTLILHWNRI  181 (933)
Q Consensus       104 ~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i  181 (933)
                      . ..+ ++.|.++++|+.++++.+.+.. .+    ..++++++|++|+|++|.+++.+|.  .++++++|++|+|++|.+
T Consensus        66 ~-~~l-~~~l~~L~~L~~l~~~~~~~~~-l~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l  138 (768)
T 3rgz_A           66 F-SAV-SSSLLSLTGLESLFLSNSHING-SV----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL  138 (768)
T ss_dssp             H-HHH-HHHTTTCTTCCEEECTTSCEEE-CC----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE
T ss_pred             c-Ccc-ChhHhccCcccccCCcCCCcCC-Cc----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc
Confidence            0 012 2467888999999999886532 22    5789999999999999999998888  899999999999999999


Q ss_pred             cCccChhhhcCCCCCCEEECCCCCCCCcchhh---cCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCC
Q 002350          182 EGSQTNQGICELKNLFEMNLERNFIGSPLITC---LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF  258 (933)
Q Consensus       182 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  258 (933)
                      .+..+...+.++++|++|+|++|.+++..+..   +.++++|++|++++|.+++..|.  .++++|++|++++|.+++.+
T Consensus       139 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~  216 (768)
T 3rgz_A          139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI  216 (768)
T ss_dssp             ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCC
T ss_pred             CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCC
Confidence            98877554589999999999999999888877   88999999999999999877664  78999999999999998766


Q ss_pred             ChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHh
Q 002350          259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR  338 (933)
Q Consensus       259 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  338 (933)
                      |.  +++                         +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..   
T Consensus       217 ~~--l~~-------------------------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---  266 (768)
T 3rgz_A          217 PF--LGD-------------------------CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---  266 (768)
T ss_dssp             CB--CTT-------------------------CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---
T ss_pred             cc--ccc-------------------------CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---
Confidence            62  444                         445556677777777778888888888888888888888777764   


Q ss_pred             CCCCCCEEEcCCCCCcCcCcCCccc-CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCcccc-ccCCCCC
Q 002350          339 NNPKLEVLLLKNNSFSGILQLPKAK-HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS-AGEMKEL  416 (933)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L  416 (933)
                      .+++|++|++++|.+++..+..+.. +++|++|++++|++++.+|..+. .+++|++|++++|.+.+.+|.. +..+++|
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L  345 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGL  345 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence            6788888888888887554444443 48888888888888877787775 4888888888888888777765 7888888


Q ss_pred             CEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcc--cCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350          417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN--LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  494 (933)
Q Consensus       417 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  494 (933)
                      ++|++++|++.+.+|..+....++|++|++++|.+.+.++..+..  +++|++|++++|.+++.+|..+..+++|++|++
T Consensus       346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  425 (768)
T 3rgz_A          346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL  425 (768)
T ss_dssp             CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred             CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence            888888888887777766432338888888888888877777766  778888888888888888888888888888888


Q ss_pred             cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcc
Q 002350          495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG  573 (933)
Q Consensus       495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~  573 (933)
                      ++|++++.+|..+..++. |+.|++++|++++.+|..+..+++|++|++++|++++.+|..+ .+++|++|++++|++++
T Consensus       426 s~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  504 (768)
T 3rgz_A          426 SFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG  504 (768)
T ss_dssp             CSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             cCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence            888888888888888876 8888888888888888888888888888888888888888777 78888888888888888


Q ss_pred             cCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccC---------Cc--
Q 002350          574 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR---------NK--  642 (933)
Q Consensus       574 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~---------N~--  642 (933)
                      .+|..+..+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+.....+..+++..         +.  
T Consensus       505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (768)
T 3rgz_A          505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK  584 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred             cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence            8888888888888899988888888888888888888999998888888888887766655444333         11  


Q ss_pred             -----------CCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchh
Q 002350          643 -----------FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDE  711 (933)
Q Consensus       643 -----------l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  711 (933)
                                 +.|..|..+..+......                              .+....               
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~l~~~~---------------  619 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPC------------------------------NITSRV---------------  619 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCS------------------------------CTTSCE---------------
T ss_pred             ccccccccccccccccchhhhcccccccc------------------------------ccccce---------------
Confidence                       222233222222110000                              000000               


Q ss_pred             hhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCe
Q 002350          712 RVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK  791 (933)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  791 (933)
                             ..+.. ......++.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++||||+|+
T Consensus       620 -------~~g~~-~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          620 -------YGGHT-SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             -------EEEEC-CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             -------ecccC-chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence                   00000 0011346789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCCCCCCCccccCCCCCCC
Q 002350          792 LTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL  853 (933)
Q Consensus       792 l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~l~~~~~~~~  853 (933)
                      ++|.||..+..+++|++||+++|+++|.||.+++|.+|+..+|.|||++||.|+. .|....
T Consensus       692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             ccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            9999999999999999999999999999999999999999999999999999876 786544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.8e-72  Score=686.56  Aligned_cols=652  Identities=29%  Similarity=0.388  Sum_probs=549.8

Q ss_pred             CCCEeeCCCCCCccc---cCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccCh-hhhcCC
Q 002350          118 ELQSLDLSVNIFTYD---SKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTN-QGICEL  193 (933)
Q Consensus       118 ~L~~LdLs~n~~~~~---~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~~l~~l  193 (933)
                      +++.|||+++.+.|.   ++    .++.++++|+.++++.+.+. .+|..++++++|++|||++|.+.+.+|. ..++++
T Consensus        51 ~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  125 (768)
T 3rgz_A           51 KVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC  125 (768)
T ss_dssp             EEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred             cEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC
Confidence            578889998888876   55    67888888888888888764 3456788888888888888888876662 168888


Q ss_pred             CCCCEEECCCCCCCCcchhhc-CCCCCCCEEEccCCcCCCCCchh---ccCCCCCCEEECCCCcCCCCCChhhhhcCCCC
Q 002350          194 KNLFEMNLERNFIGSPLITCL-KNLTRLKILDISSNQLNGSLPSV---ISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL  269 (933)
Q Consensus       194 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  269 (933)
                      ++|++|+|++|.+.+.+|..+ .++++|++|++++|++++..|..   +.++++|++|++++|.+++..+          
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------  195 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----------  195 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----------
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----------
Confidence            888888888888887777665 78888888888888888777766   7788888888888888776544          


Q ss_pred             ceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcC
Q 002350          270 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK  349 (933)
Q Consensus       270 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~  349 (933)
                                        +..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+. .+++|++|+++
T Consensus       196 ------------------~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls  255 (768)
T 3rgz_A          196 ------------------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNIS  255 (768)
T ss_dssp             ------------------CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECC
T ss_pred             ------------------cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECC
Confidence                              23456777888888999888887 99999999999999999988888774 89999999999


Q ss_pred             CCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCC
Q 002350          350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG  429 (933)
Q Consensus       350 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  429 (933)
                      +|.+++.  .+...+++|++|++++|++++.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.+.|.
T Consensus       256 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  333 (768)
T 3rgz_A          256 SNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE  333 (768)
T ss_dssp             SSCCEES--CCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCcccCc--cCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence            9999876  44448999999999999999999999877679999999999999999999999999999999999999999


Q ss_pred             cchhhhcCCCCCCEEECcCCcCCCcCchhhcccC-cCCeEEccCccccccccccccC--CCCCCEEEccCCcCCCCChhh
Q 002350          430 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT-RLRHLYFENNNFSGKIKDGLLS--STSLQVLDISNNMLSGHIPHW  506 (933)
Q Consensus       430 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~  506 (933)
                      +|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+..  +++|++|++++|++++.+|..
T Consensus       334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  413 (768)
T 3rgz_A          334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT  413 (768)
T ss_dssp             CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred             CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence            9988788999999999999999999999999987 9999999999999999988877  889999999999999999999


Q ss_pred             HhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCc
Q 002350          507 MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL  585 (933)
Q Consensus       507 l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  585 (933)
                      +..++. |+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ .+++|++|++++|++++.+|..+..+++|
T Consensus       414 l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  492 (768)
T 3rgz_A          414 LSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL  492 (768)
T ss_dssp             GGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             HhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence            999887 9999999999999999999999999999999999999999888 89999999999999999999999999999


Q ss_pred             cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCcc
Q 002350          586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL  665 (933)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~  665 (933)
                      ++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..++++++|+.|++++|+++|.+|..+.....+......  
T Consensus       493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~--  570 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI--  570 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT--
T ss_pred             CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc--
Confidence            999999999999999999999999999999999999999999999999999999999999999988775433211000  


Q ss_pred             CCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC
Q 002350          666 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT  745 (933)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  745 (933)
                      ...           .+....+.......... ..  .+.......               .....+..+..++++.|.++
T Consensus       571 ~~~-----------~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~---------------~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          571 AGK-----------RYVYIKNDGMKKECHGA-GN--LLEFQGIRS---------------EQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             CSC-----------EEEEEECCSCCTTCCSS-EE--EEECTTCCG---------------GGGGGGGGTCCSCTTSCEEE
T ss_pred             ccc-----------ccccccccccccccccc-cc--ccccccccc---------------hhhhccccccccccccceec
Confidence            000           00000000000000000 00  000000000               00012345566889999999


Q ss_pred             CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-C
Q 002350          746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-G  824 (933)
Q Consensus       746 g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~  824 (933)
                      |.+|..++.+++|+.|||++|+++|.+|..|+++++|+.|||++|+++|.||..+++++.|++|||++|+++|.+|.. .
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999976 5


Q ss_pred             cCCccCcccccCCC
Q 002350          825 QFATFDESSYRGNP  838 (933)
Q Consensus       825 ~~~~~~~~~~~gN~  838 (933)
                      .+..+....+.+|+
T Consensus       702 ~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          702 ALTMLTEIDLSNNN  715 (768)
T ss_dssp             GCCCCSEEECCSSE
T ss_pred             CCCCCCEEECcCCc
Confidence            56666777777775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.2e-59  Score=564.66  Aligned_cols=591  Identities=21%  Similarity=0.215  Sum_probs=451.5

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL  196 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  196 (933)
                      +++++|||++|.+.+..+    ..|.++++|++|+|++|.+++..|..++++++|++|+|++|.+++..+ ..++.+++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-hhhccCCCC
Confidence            689999999998887554    678889999999999999998888899999999999999999886544 568899999


Q ss_pred             CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccc
Q 002350          197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST  276 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  276 (933)
                      ++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+ ..+.            
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~------------  166 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELD------------  166 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHG------------
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhh------------
Confidence            999999999988777889999999999999999998888888899999999999998875433 2221            


Q ss_pred             ccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHh--CCCCCCEEEcCCCCCc
Q 002350          277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLR--NNPKLEVLLLKNNSFS  354 (933)
Q Consensus       277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~  354 (933)
                                 ...+++|++|++++|.+++..|..+..+++|+.|+++++.+.+.....+..  ..++|+.|++++|.++
T Consensus       167 -----------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          167 -----------IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             -----------GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             -----------ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence                       113356777888888888888888888899999999988876443332211  3467777777777777


Q ss_pred             CcCcCCcccCCC--ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcch
Q 002350          355 GILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ  432 (933)
Q Consensus       355 ~~~~~~~~~~~~--L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  432 (933)
                      +..+..+..++.  |++|++++|++++..|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|...+.++.
T Consensus       236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~  314 (680)
T 1ziw_A          236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL  314 (680)
T ss_dssp             EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred             ccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence            665555554433  66666666666644444443 366666666666666666666666666666666666544322211


Q ss_pred             hhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCC-hh-hHhhh
Q 002350          433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI-PH-WMGNF  510 (933)
Q Consensus       433 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~-~l~~~  510 (933)
                      .                .+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.... +. .+..+
T Consensus       315 ~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~  378 (680)
T 1ziw_A          315 A----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL  378 (680)
T ss_dssp             ------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG
T ss_pred             c----------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccc
Confidence            0                011111124566777788888888777777777777888888888877654221 11 12211


Q ss_pred             c-cccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccC-ccc-cCCCCceEEeecCcCcccCchhhccCCCccE
Q 002350          511 S-SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT  587 (933)
Q Consensus       511 ~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  587 (933)
                      . .+|+.|++++|++++..|..+..+++|+.|++++|++.+.++ ..+ ++++|++|++++|++.+..+..|..+++|+.
T Consensus       379 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  458 (680)
T 1ziw_A          379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR  458 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred             ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence            1 249999999999998888999999999999999999987666 445 8999999999999999888999999999999


Q ss_pred             EeCcCCcCc--ccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCcc
Q 002350          588 LNLRDNTFS--GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL  665 (933)
Q Consensus       588 L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~  665 (933)
                      |++++|.+.  +.+|..+..+++|++|++++|++++..+..|.++++|+.|++++|++++..+..+....          
T Consensus       459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----------  528 (680)
T 1ziw_A          459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP----------  528 (680)
T ss_dssp             EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC----------
T ss_pred             chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc----------
Confidence            999999987  57899999999999999999999988888899999999999999998753222111000          


Q ss_pred             CCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC
Q 002350          666 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT  745 (933)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  745 (933)
                                                                                 ......+++|+.|||++|+++
T Consensus       529 -----------------------------------------------------------~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          529 -----------------------------------------------------------IYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             -----------------------------------------------------------CCTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------------------------chhhcCCCCCCEEECCCCCCC
Confidence                                                                       000023567889999999999


Q ss_pred             CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCc-CCCCCCeEEccCCcCcccCCC
Q 002350          746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT-ALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       746 g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      ...+..|+.+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            44445689999999999999999988888889999999999999999988887777 788999999999999988874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-58  Score=560.83  Aligned_cols=588  Identities=20%  Similarity=0.187  Sum_probs=443.6

Q ss_pred             EeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEE
Q 002350          121 SLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMN  200 (933)
Q Consensus       121 ~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~  200 (933)
                      .+|.+++.++. +|    ..+.  +++++|+|++|.+++..+..|+++++|++|++++|.+++..+ ..+.++++|++|+
T Consensus         8 ~~~cs~~~L~~-ip----~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~   79 (680)
T 1ziw_A            8 VADCSHLKLTQ-VP----DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLN   79 (680)
T ss_dssp             EEECCSSCCSS-CC----SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEE
T ss_pred             eeECCCCCccc-cc----cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEE
Confidence            45566655542 33    2232  678888888888888777788888888888888888887666 5678888888888


Q ss_pred             CCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCc
Q 002350          201 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT  280 (933)
Q Consensus       201 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~  280 (933)
                      |++|.+++..+.+|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+                     
T Consensus        80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------------  138 (680)
T 1ziw_A           80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL---------------------  138 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC---------------------
T ss_pred             CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc---------------------
Confidence            88888877655678888888888888888877666778888888888888887764322                     


Q ss_pred             cccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHH-hCCCCCCEEEcCCCCCcCcCcC
Q 002350          281 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL-RNNPKLEVLLLKNNSFSGILQL  359 (933)
Q Consensus       281 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~  359 (933)
                                                   ..+.++++|++|++++|.+++..+..+. ..+++|++|++++|.+++..+.
T Consensus       139 -----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          139 -----------------------------GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             -----------------------------CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             -----------------------------hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence                                         2333444555555555555433333221 1334555555555555555444


Q ss_pred             CcccCCCccEEEccCCcCCCCCChhhhh--cCCCccEEEccCCCCCCCccccccCCCC--CCEEEcCCCcCCCCcchhhh
Q 002350          360 PKAKHDFLHHLDISCNNFRGKLPHNMGV--ILQKLMYMDISKNCFEGNIPYSAGEMKE--LSLLDLSRNYFSGGLSQSVV  435 (933)
Q Consensus       360 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~  435 (933)
                      .+..+++|+.|+++++.+.+.....+..  ..++|++|++++|.+.+..|..+..++.  |++|++++|.+.+ ++...+
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~  268 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSF  268 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccc
Confidence            4555556666666665543221111110  1367777777777777666666666544  7777777777763 333445


Q ss_pred             cCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccc-----ccc----ccccCCCCCCEEEccCCcCCCCChhh
Q 002350          436 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-----KIK----DGLLSSTSLQVLDISNNMLSGHIPHW  506 (933)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~  506 (933)
                      ..+++|++|++++|.+.+..+..+..+++|+.|++++|...+     .+|    ..+..+++|++|++++|.+.+..+..
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  348 (680)
T 1ziw_A          269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM  348 (680)
T ss_dssp             TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred             cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence            677778888888887777777777778888888887765442     122    26788999999999999999888888


Q ss_pred             HhhhccccceeecCCCcCCCC--cchhccC--CCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCc-hhhc
Q 002350          507 MGNFSSELEILSMSKNHLEGN--VPVQLNN--LERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP-GELF  580 (933)
Q Consensus       507 l~~~~~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p-~~~~  580 (933)
                      +..++. |++|++++|.+...  ....|..  .++|+.|++++|++++..+..+ .+++|++|++++|.+.+.+| ..+.
T Consensus       349 ~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  427 (680)
T 1ziw_A          349 FTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR  427 (680)
T ss_dssp             TTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred             hccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence            888877 99999999986532  2223333  3689999999999999888888 89999999999999987666 6889


Q ss_pred             cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCC--CCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccc
Q 002350          581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ--GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR  658 (933)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~  658 (933)
                      .+++|++|++++|++++..+..+..+++|+.|++++|.++  +.+|..+.++++|+.|++++|++++..|..+.+     
T Consensus       428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-----  502 (680)
T 1ziw_A          428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-----  502 (680)
T ss_dssp             TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----
T ss_pred             CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----
Confidence            9999999999999999888999999999999999999987  568999999999999999999999766655543     


Q ss_pred             cCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEE
Q 002350          659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD  738 (933)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  738 (933)
                                                                                              +++|+.||
T Consensus       503 ------------------------------------------------------------------------l~~L~~L~  510 (680)
T 1ziw_A          503 ------------------------------------------------------------------------LEKLEILD  510 (680)
T ss_dssp             ------------------------------------------------------------------------CTTCCEEE
T ss_pred             ------------------------------------------------------------------------ccccCEEe
Confidence                                                                                    34678899


Q ss_pred             cCCCcCCCCC--------ChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEE
Q 002350          739 LSCNQLTGEI--------PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN  810 (933)
Q Consensus       739 Ls~N~l~g~i--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  810 (933)
                      |++|++++..        +..++.+++|++|+|++|+++...+..|+++++|+.|||++|++++..|..|..+++|+.|+
T Consensus       511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  590 (680)
T 1ziw_A          511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN  590 (680)
T ss_dssp             CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence            9999998642        23478999999999999999966666899999999999999999987777889999999999


Q ss_pred             ccCCcCcccCCCC-C-cCCccCcccccCCCCCCCccc
Q 002350          811 VSYNNLSGRTPDK-G-QFATFDESSYRGNPSLCAWLI  845 (933)
Q Consensus       811 ls~N~l~g~~p~~-~-~~~~~~~~~~~gN~~lc~~~l  845 (933)
                      +++|++++..|.. . .+.++....+.||||.|+|..
T Consensus       591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999987753 2 466778888999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-54  Score=534.65  Aligned_cols=525  Identities=20%  Similarity=0.218  Sum_probs=306.6

Q ss_pred             CCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcc-hhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEE
Q 002350          169 PSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPL-ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYL  247 (933)
Q Consensus       169 ~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  247 (933)
                      ++|++|||++|.+++..+ ..+.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|..|+++++|++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            344444444444443333 33444444444444444333333 4445555555555555555554445555555555555


Q ss_pred             ECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCC-chhhhCCCCCCEEEccCC
Q 002350          248 DLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSHN  326 (933)
Q Consensus       248 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n  326 (933)
                      ++++|.+++.++..                        ..+..+++|++|++++|.+++.. +..++++++|++|++++|
T Consensus       103 ~Ls~n~l~~~~~~~------------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          103 RLYFCGLSDAVLKD------------------------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             ECTTCCCSSCCSTT------------------------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             eCcCCCCCcccccC------------------------ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            55555544322210                        01222333334444444444433 356888999999999999


Q ss_pred             CCcccchhHHHhCC--CCCCEEEcCCCCCcCcCcCCcccCCC------ccEEEccCCcCCCCCChhhhhcC--CCccEEE
Q 002350          327 KLVGNFPTWLLRNN--PKLEVLLLKNNSFSGILQLPKAKHDF------LHHLDISCNNFRGKLPHNMGVIL--QKLMYMD  396 (933)
Q Consensus       327 ~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~  396 (933)
                      .+++..|..+. .+  ++|+.|++++|.+.+..+..+..+++      |++|++++|.+++.++..+...+  .+++.+.
T Consensus       159 ~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          159 QIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             CCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             cCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            99877776654 44  78888888888888765444444443      77777777777766666654322  3455666


Q ss_pred             ccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCC--CCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcc
Q 002350          397 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC--FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN  474 (933)
Q Consensus       397 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  474 (933)
                      ++.+.....               ...+.+.+ .....+.++  ++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       238 l~~~~~~~~---------------~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  301 (844)
T 3j0a_A          238 LAHHIMGAG---------------FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK  301 (844)
T ss_dssp             CCSSCCBCS---------------SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred             ccccccccc---------------ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence            553322110               11222221 122222232  567777777777776666667777777777777777


Q ss_pred             ccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCc
Q 002350          475 FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS  554 (933)
Q Consensus       475 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  554 (933)
                      +++..+..+..+++|++|++++|.+++..|..+..++. |+.|++++|++.+..+..|..+++|+.|++++|.+++..  
T Consensus       302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--  378 (844)
T 3j0a_A          302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH--  378 (844)
T ss_dssp             CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--
T ss_pred             CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc--
Confidence            77666667777777777777777776665666666665 777777777776666666777777777777777765432  


Q ss_pred             cccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCccc-CchhhhcCCCccEEEcCCCcCCCCCch-hhhcCCC
Q 002350          555 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQK  632 (933)
Q Consensus       555 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~  632 (933)
                        .+++|+.|++++|+++. +|..   ..+++.|++++|++++. .+..+..+++|++|+|++|++++..+. .+..+++
T Consensus       379 --~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  452 (844)
T 3j0a_A          379 --FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS  452 (844)
T ss_dssp             --SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred             --CCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCc
Confidence              25667777777777763 3332   34667777777777643 223345667777777777777654332 3445666


Q ss_pred             CCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhh
Q 002350          633 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER  712 (933)
Q Consensus       633 L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  712 (933)
                      |+.|++++|.+++..+..+..-                                                          
T Consensus       453 L~~L~Ls~N~l~~~~~~~~~~~----------------------------------------------------------  474 (844)
T 3j0a_A          453 LEQLFLGENMLQLAWETELCWD----------------------------------------------------------  474 (844)
T ss_dssp             CCBCEEESCCCSSSCCSCCCSS----------------------------------------------------------
T ss_pred             cccccCCCCccccccccccchh----------------------------------------------------------
Confidence            7777777776653222110000                                                          


Q ss_pred             hHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCee
Q 002350          713 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL  792 (933)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  792 (933)
                                    ....+++|+.|||++|++++.+|..++.+++|+.|+|++|++++.+|..+.  ++|+.|||++|++
T Consensus       475 --------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          475 --------------VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL  538 (844)
T ss_dssp             --------------CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred             --------------hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence                          001234566667777777666666666666777777777777665555554  6667777777777


Q ss_pred             cccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          793 TGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       793 ~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      ++.+|..+.   .|+.+++++|++.|.++
T Consensus       539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          539 LAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             CCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             CCCChhHhC---CcCEEEecCCCcccccc
Confidence            766665543   56666777776666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.2e-53  Score=508.33  Aligned_cols=538  Identities=21%  Similarity=0.184  Sum_probs=386.7

Q ss_pred             CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350          120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM  199 (933)
Q Consensus       120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  199 (933)
                      +++|.++..++ .+|    ..+.  +++++|++++|.+++..|..|+++++|++|+|++|++.+..+ ..+.++++|++|
T Consensus        15 ~~~~c~~~~l~-~iP----~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L   86 (606)
T 3t6q_A           15 KTYNCENLGLN-EIP----GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTL   86 (606)
T ss_dssp             TEEECTTSCCS-SCC----TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred             ceEECCCCCcc-cCc----CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCee
Confidence            46677666554 233    2222  357777777777777667777777777777777777766555 556777777777


Q ss_pred             ECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccC
Q 002350          200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN  279 (933)
Q Consensus       200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~  279 (933)
                      +|++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++.                      
T Consensus        87 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~----------------------  144 (606)
T 3t6q_A           87 VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI----------------------  144 (606)
T ss_dssp             ECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC----------------------
T ss_pred             eCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc----------------------
Confidence            7777777766666777777777777777777765566667777777777777766532                      


Q ss_pred             ccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCC--EEEcCCCCCcCcC
Q 002350          280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE--VLLLKNNSFSGIL  357 (933)
Q Consensus       280 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~--~L~L~~n~l~~~~  357 (933)
                                                  .+..+..+++|++|++++|.+++..|..+ ..+++|+  .|++++|.+++..
T Consensus       145 ----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~  195 (606)
T 3t6q_A          145 ----------------------------KLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIE  195 (606)
T ss_dssp             ----------------------------CCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEEC
T ss_pred             ----------------------------CcccccCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCccC
Confidence                                        11112225556666666666553333333 3555555  5555555555543


Q ss_pred             cCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcC
Q 002350          358 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG  437 (933)
Q Consensus       358 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  437 (933)
                      +..+ ....|++|++++|.   .++..+ ..+.+++...+....+.           .+...         .++...+.+
T Consensus       196 ~~~~-~~~~L~~L~l~~~~---~~~~~~-~~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~  250 (606)
T 3t6q_A          196 PGAF-DSAVFQSLNFGGTQ---NLLVIF-KGLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEG  250 (606)
T ss_dssp             TTTT-TTCEEEEEECTTCS---CHHHHH-HHTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGG
T ss_pred             hhHh-hhccccccccCCch---hHHHHh-hhccccchhheechhhc-----------ccccc---------ccChhHhch
Confidence            3222 23456666666664   223222 22444443333322221           11111         112222222


Q ss_pred             CC--CCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccc
Q 002350          438 CF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE  515 (933)
Q Consensus       438 l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~  515 (933)
                      +.  +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..++. |+
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~  328 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LT  328 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CS
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc-CC
Confidence            22  6778888888888777777888888888888888887 67777888888888888888888666777777776 88


Q ss_pred             eeecCCCcCCCCcch-hccCCCCCCEEEccCCcCcccc--Cccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCc
Q 002350          516 ILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR  591 (933)
Q Consensus       516 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  591 (933)
                      .|++++|.+.+.+|. .+..+++|++|++++|++.+..  +..+ .+++|++|++++|++.+..|..+..+++|++|+++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence            888888888765554 4888899999999999988765  5555 78899999999999988888899999999999999


Q ss_pred             CCcCcccCch-hhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC---chhhhhhccccCCCCccCC
Q 002350          592 DNTFSGRIPH-QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP---PCFANVLSWRVGSDDVLNG  667 (933)
Q Consensus       592 ~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p---~~~~~l~~l~~~~~~~~~~  667 (933)
                      +|++++..|. .+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+   ..+.               
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---------------  473 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---------------  473 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG---------------
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc---------------
Confidence            9999877654 48889999999999999998889999999999999999999875211   1111               


Q ss_pred             CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350          668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE  747 (933)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  747 (933)
                                                                                    .+++|+.||+++|++++.
T Consensus       474 --------------------------------------------------------------~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          474 --------------------------------------------------------------TLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             --------------------------------------------------------------GCTTCCEEECTTSCCCEE
T ss_pred             --------------------------------------------------------------cCCCccEEECCCCccCcc
Confidence                                                                          245788899999999988


Q ss_pred             CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      +|..++.+++|+.|+|++|++++.+|..|.++++| .|||++|++++.+|..+..+++|+.+++++|+++|.++
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            89999999999999999999999999999999999 99999999998888888999999999999999988776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.4e-52  Score=499.31  Aligned_cols=517  Identities=18%  Similarity=0.168  Sum_probs=444.7

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL  196 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  196 (933)
                      +++++|||++|.+++..+    .+|+++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+ ..++.+++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTC
T ss_pred             CcCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccc
Confidence            368999999999987666    789999999999999999998889999999999999999999987766 679999999


Q ss_pred             CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCc--eEec
Q 002350          197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE--GLLL  274 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~--~L~L  274 (933)
                      ++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +...++++++|+  .|++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEEC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEec
Confidence            9999999999997788899999999999999999975545555699999999999999854 446788999998  7888


Q ss_pred             ccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcc----cchhHHHhCCC--CCCEEEc
Q 002350          275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG----NFPTWLLRNNP--KLEVLLL  348 (933)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~~l~--~L~~L~L  348 (933)
                      ++|......+. . .....|+.|++++|.   ..+..+..+.+++...+....+.+    .++...+..+.  +|+.|++
T Consensus       187 ~~n~l~~~~~~-~-~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          187 NGNDIAGIEPG-A-FDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             TTCCCCEECTT-T-TTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             CCCccCccChh-H-hhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence            87765443322 2 334689999999886   345566666665544443332221    23333333333  7999999


Q ss_pred             CCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCC
Q 002350          349 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG  428 (933)
Q Consensus       349 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  428 (933)
                      ++|.++++.+..+..+++|++|++++|+++ .+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             ecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            999999997777899999999999999998 8888775 48999999999999998888899999999999999999998


Q ss_pred             CcchhhhcCCCCCCEEECcCCcCCCcC--chhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhh
Q 002350          429 GLSQSVVTGCFSLELLDLSNNNFEGQF--FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW  506 (933)
Q Consensus       429 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  506 (933)
                      .++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|..
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            888888889999999999999999876  778899999999999999999888999999999999999999998776654


Q ss_pred             -HhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc---cCccc-cCCCCceEEeecCcCcccCchhhcc
Q 002350          507 -MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP---IASSL-NLSSVEHLSLQKNALNGLIPGELFR  581 (933)
Q Consensus       507 -l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~  581 (933)
                       +..++. |+.|++++|.+++..|..+..+++|++|++++|++.+.   .+..+ .+++|++|++++|++++..|..+..
T Consensus       420 ~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  498 (606)
T 3t6q_A          420 PFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS  498 (606)
T ss_dssp             TTTTCTT-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhCccc-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence             666766 99999999999999999999999999999999999873   22344 8999999999999999999999999


Q ss_pred             CCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC
Q 002350          582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP  648 (933)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p  648 (933)
                      +++|++|++++|++++..|..+..+++| +|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus       499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999999999 99999999999999999999999999999999997655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-52  Score=513.27  Aligned_cols=528  Identities=20%  Similarity=0.246  Sum_probs=381.4

Q ss_pred             EEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCC-chhccCCCCCCEEECCC
Q 002350          173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL-PSVISNLTSLEYLDLSH  251 (933)
Q Consensus       173 ~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~  251 (933)
                      ..|.+++.++....     -.++|++|+|++|.+++..+..|+++++|++|+|++|...+.+ |..|.++++|++|+|++
T Consensus         8 ~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            55666666664321     3466777777777777666667777777777777777544443 56667777777777777


Q ss_pred             CcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchh--hhCCCCCCEEEccCCCCc
Q 002350          252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF--LLHQYHLKYLDLSHNKLV  329 (933)
Q Consensus       252 n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~  329 (933)
                      |.+++..| .                         .+..+++|++|++++|.+++.+|..  +.++++|++|+|++|.++
T Consensus        83 N~l~~~~p-~-------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~  136 (844)
T 3j0a_A           83 SKIYFLHP-D-------------------------AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR  136 (844)
T ss_dssp             CCCCEECT-T-------------------------SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred             CcCcccCH-h-------------------------HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence            66654322 1                         2233334444455555555444332  555555555555555555


Q ss_pred             ccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcC--CCccEEEccCCCCCCCcc
Q 002350          330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL--QKLMYMDISKNCFEGNIP  407 (933)
Q Consensus       330 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~p  407 (933)
                      +..+...                        +..+++|++|++++|.+++..+..+.. +  ++|+.|+++.|.+.+..|
T Consensus       137 ~~~~~~~------------------------~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          137 SLYLHPS------------------------FGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             CCCCCGG------------------------GGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCC
T ss_pred             ccccchh------------------------HhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccc
Confidence            4333222                        334444555555555554444444432 2  455555555555555555


Q ss_pred             ccccCCCC------CCEEEcCCCcCCCCcchhhhcC--CCCCCEEECcC---------CcCCCcCchhhccc--CcCCeE
Q 002350          408 YSAGEMKE------LSLLDLSRNYFSGGLSQSVVTG--CFSLELLDLSN---------NNFEGQFFSEYMNL--TRLRHL  468 (933)
Q Consensus       408 ~~l~~l~~------L~~L~Ls~n~l~~~~~~~~~~~--l~~L~~L~Ls~---------n~l~~~~~~~~~~l--~~L~~L  468 (933)
                      ..++.+++      |+.|++++|.+.+.++..+...  ..+++.+.++.         +.+.+.....|..+  ++|+.|
T Consensus       192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L  271 (844)
T 3j0a_A          192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL  271 (844)
T ss_dssp             CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred             cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence            44444433      6666666666655555444322  23556666553         33333334445443  789999


Q ss_pred             EccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcC
Q 002350          469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL  548 (933)
Q Consensus       469 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  548 (933)
                      ++++|.+.+..+..+..+++|++|++++|++++..|..+..++. |++|++++|++++..|..|..+++|+.|++++|++
T Consensus       272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  350 (844)
T 3j0a_A          272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI  350 (844)
T ss_dssp             ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred             ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence            99999999888999999999999999999999887888888877 99999999999988899999999999999999999


Q ss_pred             ccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chh
Q 002350          549 SGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQ  626 (933)
Q Consensus       549 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~  626 (933)
                      .+..+..+ .+++|++|++++|.+++.     ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..
T Consensus       351 ~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~  421 (844)
T 3j0a_A          351 AIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYF  421 (844)
T ss_dssp             CCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred             CccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhh
Confidence            88888777 899999999999999854     23789999999999998 55654   468999999999999753 344


Q ss_pred             hhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhh
Q 002350          627 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR  706 (933)
Q Consensus       627 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  706 (933)
                      +.++++|+.|++++|++++..+....                                                      
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------------------  447 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTP------------------------------------------------------  447 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSS------------------------------------------------------
T ss_pred             hhcCCccceeeCCCCccccccccccc------------------------------------------------------
Confidence            67899999999999999865432110                                                      


Q ss_pred             hhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC-----CCCChhhhhccccCeeeccccccccccchhccCCCC
Q 002350          707 AAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT-----GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKM  781 (933)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  781 (933)
                                            ..+++|+.|+|++|.++     +..|..+..+++|+.|+|++|++++.+|..|.++++
T Consensus       448 ----------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          448 ----------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             ----------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             ----------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence                                  11346888999999997     455677899999999999999999999999999999


Q ss_pred             CCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCCCCCCCcccc
Q 002350          782 IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQ  846 (933)
Q Consensus       782 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~l~  846 (933)
                      |+.|||++|++++..|..+.  ++|+.||+++|++++.+|..  |..+....+.|||+.|+|++.
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence            99999999999988777776  89999999999999999854  667778889999999988753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-52  Score=500.29  Aligned_cols=536  Identities=20%  Similarity=0.175  Sum_probs=358.4

Q ss_pred             CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350          120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM  199 (933)
Q Consensus       120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  199 (933)
                      ++++.+++.++. +|    ..+.  ++|++|+|++|.+++..+..|+++++|++|++++|.+++..+ ..+.++++|++|
T Consensus        14 ~~~~c~~~~l~~-ip----~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L   85 (606)
T 3vq2_A           14 ITYQCMDQKLSK-VP----DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNL   85 (606)
T ss_dssp             TEEECTTSCCSS-CC----TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred             CceEccCCCccc-CC----CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEe
Confidence            456666665542 22    1121  556666666666665555566666666666666666554444 345555555555


Q ss_pred             ECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccC
Q 002350          200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN  279 (933)
Q Consensus       200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~  279 (933)
                      +|++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+++                       
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------  142 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-----------------------  142 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC-----------------------
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc-----------------------
Confidence            555555555555555555555555555555554444455555555555555554432                       


Q ss_pred             ccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCC----CCEEEcCCCCCcC
Q 002350          280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPK----LEVLLLKNNSFSG  355 (933)
Q Consensus       280 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~----L~~L~L~~n~l~~  355 (933)
                                                ..+|..++++++|++|++++|++++..|..+. .+++    +++|++++|.+++
T Consensus       143 --------------------------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~  195 (606)
T 3vq2_A          143 --------------------------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDF  195 (606)
T ss_dssp             --------------------------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCE
T ss_pred             --------------------------eechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcce
Confidence                                      13577888899999999999998865554332 3333    4477777777776


Q ss_pred             cCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhh
Q 002350          356 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV  435 (933)
Q Consensus       356 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  435 (933)
                      +.+..+... +|++|++++|.+.+.........++.|+.+++..+.+.+..        .+.           .++...+
T Consensus       196 ~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~-----------~~~~~~~  255 (606)
T 3vq2_A          196 IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLE-----------IFEPSIM  255 (606)
T ss_dssp             ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCS-----------CCCGGGG
T ss_pred             eCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccc-----------ccChHHh
Confidence            654444333 67777777776653333333344666666666544333210        000           1111112


Q ss_pred             cCCC--CCCEEEC-cCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcc
Q 002350          436 TGCF--SLELLDL-SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS  512 (933)
Q Consensus       436 ~~l~--~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~  512 (933)
                      .++.  .++.+++ ..|.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|..  .++.
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~  329 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL--DLPF  329 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC--CCSS
T ss_pred             hhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccccC--CCCc
Confidence            2222  3556666 56667766666 777888888888888876 445 677778888888888888 577743  5555


Q ss_pred             ccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcccc--Cccc-cCCCCceEEeecCcCcccCchhhccCCCccEEe
Q 002350          513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN  589 (933)
Q Consensus       513 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  589 (933)
                       |+.|++++|+..+..  .+..+++|+.|++++|++++..  +..+ .+++|++|++++|.+.+ +|..+..+++|++|+
T Consensus       330 -L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          330 -LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD  405 (606)
T ss_dssp             -CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE
T ss_pred             -cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE
Confidence             888888888655433  5667888888888888887653  4444 77888888888888775 457777888888888


Q ss_pred             CcCCcCcccCc-hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCC-CCchhhhhhccccCCCCccCC
Q 002350          590 LRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNG  667 (933)
Q Consensus       590 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~l~~~~~~~~~~  667 (933)
                      +++|++.+..| ..+..+++|++|++++|++++..|..+.++++|+.|++++|++++. +|..++.              
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------  471 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------  471 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------------
Confidence            88888887766 6778888888888888888887888888888888888888888763 4444332              


Q ss_pred             CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350          668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE  747 (933)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  747 (933)
                                                                                     +++|+.|||++|++++.
T Consensus       472 ---------------------------------------------------------------l~~L~~L~Ls~n~l~~~  488 (606)
T 3vq2_A          472 ---------------------------------------------------------------TTNLTFLDLSKCQLEQI  488 (606)
T ss_dssp             ---------------------------------------------------------------CTTCCEEECTTSCCCEE
T ss_pred             ---------------------------------------------------------------CCCCCEEECCCCcCCcc
Confidence                                                                           34677788888888888


Q ss_pred             CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC-CCCeEEccCCcCcccCC
Q 002350          748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN-FLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~~p  821 (933)
                      +|..++.+++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|+++++++|++.|.+|
T Consensus       489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            8888888888888888888888888888888888888888888888 6677777776 58888888888887776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-50  Score=482.78  Aligned_cols=512  Identities=20%  Similarity=0.161  Sum_probs=436.3

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL  196 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  196 (933)
                      ++|++|||++|.+.+..+    ..|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..| ..++++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTC
T ss_pred             CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccC
Confidence            789999999999987665    689999999999999999998889999999999999999999998777 679999999


Q ss_pred             CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCC----ce
Q 002350          197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL----EG  271 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L----~~  271 (933)
                      ++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+ ..++.+++|    .+
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLS  185 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCE
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccce
Confidence            999999999998877889999999999999999986 569999999999999999999986544 445555554    47


Q ss_pred             EecccccCccccccCCCCCCCcceEEEccCCCCC-CCCchhhhCCCCCCEEEccCCCCccc-----chhHHHhCCC--CC
Q 002350          272 LLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGN-----FPTWLLRNNP--KL  343 (933)
Q Consensus       272 L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~~l~--~L  343 (933)
                      +++++|... .++...+... +|++|++++|.+. +..|..+..++.|+.+++..+.+.+.     ++...+..+.  .+
T Consensus       186 L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  263 (606)
T 3vq2_A          186 LDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI  263 (606)
T ss_dssp             EECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred             eeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence            999887754 3444444444 8999999999887 45778889999999988865544321     2222222222  46


Q ss_pred             CEEEc-CCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcC
Q 002350          344 EVLLL-KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLS  422 (933)
Q Consensus       344 ~~L~L-~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  422 (933)
                      +.+++ ..+.+.+..+. +..+++|++|++++|.+. .+| .+. .+++|++|++++|.+ +.+| .+ .+++|+.|+++
T Consensus       264 ~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~-~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~  336 (606)
T 3vq2_A          264 DEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVP-KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT  336 (606)
T ss_dssp             EEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCC-TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred             hheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hcc-ccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence            66777 66777776544 788999999999999997 677 443 488999999999999 5788 45 99999999999


Q ss_pred             CCcCCCCcchhhhcCCCCCCEEECcCCcCCCc--CchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC
Q 002350          423 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ--FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS  500 (933)
Q Consensus       423 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  500 (933)
                      +|...+.+   .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.
T Consensus       337 ~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~  412 (606)
T 3vq2_A          337 MNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK  412 (606)
T ss_dssp             SCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE
T ss_pred             CCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccC
Confidence            99765444   346889999999999999876  37888999999999999999985 6688999999999999999999


Q ss_pred             CCCh-hhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc-ccCccc-cCCCCceEEeecCcCcccCch
Q 002350          501 GHIP-HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSL-NLSSVEHLSLQKNALNGLIPG  577 (933)
Q Consensus       501 ~~~p-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~  577 (933)
                      +..| ..+..++. |+.|++++|.+++..|..+.++++|++|++++|++.+ .+|..+ .+++|++|++++|++++..|.
T Consensus       413 ~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          413 RVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             STTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            7777 56777776 9999999999999999999999999999999999998 467777 899999999999999999999


Q ss_pred             hhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcCCCCCCc
Q 002350          578 ELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPP  649 (933)
Q Consensus       578 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~  649 (933)
                      .+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999999999999999999999 6787799997 699999999999976653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-50  Score=481.98  Aligned_cols=521  Identities=17%  Similarity=0.225  Sum_probs=288.9

Q ss_pred             CChHHHHHHHHHhhhhccccccc--ccCCCCCCCCCCCCCCCCCCCCCccc---ceeEecCCCCcEEEEecCCCCCCCCC
Q 002350           27 ACLETERTALLQIKSFFISASDI--EYKDSILSSWVDDDDDDGMPSDCCHW---QRVKCNATTGRVMQLSLKNTTRLNYP  101 (933)
Q Consensus        27 ~~~~~~~~~ll~~k~~~~~~~~~--~~~~~~l~~W~~~~~~~~~~~~~C~w---~gv~c~~~~~~V~~l~l~~~~~l~l~  101 (933)
                      +....|++||.+||+++..+.-.  +++.....+| +.+      ++||.|   .||+|+.. |||++|+|++.+.   +
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W-~~~------~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l---~   94 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW-NFN------KELDMWGAQPGVSLNSN-GRVTGLSLEGFGA---S   94 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCC-CCS------SCGGGTTCCTTEEECTT-CCEEEEECTTSCC---E
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC-CCC------CCcccccCCCCeEEcCC-CCEEEEEecCccc---C
Confidence            34568999999999998654111  1122356689 544      789999   99999864 9999999987764   3


Q ss_pred             CCCcccccccccCCCCCCCEeeCCCCCCccccCcc--------ccccCCCCCCCCEEeCCCCcCCCcchhhhcC-CCCCC
Q 002350          102 YDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVA--------AYDSLRSLKQLKILVLGHNYFDDSIFSYLNT-LPSLC  172 (933)
Q Consensus       102 ~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~--------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~  172 (933)
                      |..     +..|.++++|++|||++|.+.......        .+...  ++.|| ++++++.+.+.++..+.. +..+.
T Consensus        95 g~l-----p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~  166 (636)
T 4eco_A           95 GRV-----PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCI  166 (636)
T ss_dssp             EEE-----CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             CcC-----ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHh
Confidence            221     245667777777777776541110000        00000  23333 444444444444433321 11111


Q ss_pred             EEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCC
Q 002350          173 TLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN  252 (933)
Q Consensus       173 ~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  252 (933)
                      .+++....+..       .....++.+.+.                      ...|++++ +|..++++++|++|++++|
T Consensus       167 ~~~l~~~~~~~-------~~~~~l~~l~l~----------------------~~~n~l~~-ip~~l~~l~~L~~L~Ls~n  216 (636)
T 4eco_A          167 NSDPQQKSIKK-------SSRITLKDTQIG----------------------QLSNNITF-VSKAVMRLTKLRQFYMGNS  216 (636)
T ss_dssp             HHCTTSCCCCC-------CCCCCCCTTTTT----------------------CCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred             hcCcccccccc-------ccccchhhhhhc----------------------cccCCCcc-CCHHHhcccCCCEEECcCC
Confidence            11111111110       001111111111                      11344444 4445555555555555555


Q ss_pred             cCCCC-CChhhhhcCCCCceEecccccCccccccCCCC--CCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCC-C
Q 002350          253 NFEGM-FPLSSLANHSKLEGLLLSTRNNTLHVKTENWL--PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK-L  328 (933)
Q Consensus       253 ~l~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l  328 (933)
                      .+++. ++..+...  .       . ..........+.  .+++|++|++++|++.+.+|..++++++|++|++++|+ +
T Consensus       217 ~l~~~~~~~~~~~~--~-------~-~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          217 PFVAENICEAWENE--N-------S-EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             CCCGGGBSSSCSCT--T-------S-HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             cccccccccccccc--c-------c-chhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            55442 00000000  0       0 000000001122  34445555555666666677778888888889999888 8


Q ss_pred             cc-cchhHHHhCC------CCCCEEEcCCCCCcCcCcC--CcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccC
Q 002350          329 VG-NFPTWLLRNN------PKLEVLLLKNNSFSGILQL--PKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK  399 (933)
Q Consensus       329 ~~-~~p~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~  399 (933)
                      +| .+|..+. .+      ++|++|++++|.++.++ .  .+..+++|++|++++|+++|.+|                 
T Consensus       287 ~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip-----------------  347 (636)
T 4eco_A          287 SGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFP-VETSLQKMKKLGMLECLYNQLEGKLP-----------------  347 (636)
T ss_dssp             CHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCC-CHHHHTTCTTCCEEECCSCCCEEECC-----------------
T ss_pred             ccccchHHHH-hhhccccCCCCCEEECCCCcCCccC-chhhhccCCCCCEEeCcCCcCccchh-----------------
Confidence            87 7887765 33      55555555555555321 1  23344445555555555444444                 


Q ss_pred             CCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCC-CCEEECcCCcCCCcCchhhcccC--cCCeEEccCcccc
Q 002350          400 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS-LELLDLSNNNFEGQFFSEYMNLT--RLRHLYFENNNFS  476 (933)
Q Consensus       400 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~  476 (933)
                               .++.+++|++|++++|++. .+|.. +..+++ |++|++++|.++ .+|..+..++  +|++|++++|.++
T Consensus       348 ---------~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          348 ---------AFGSEIKLASLNLAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             ---------CCEEEEEESEEECCSSEEE-ECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             ---------hhCCCCCCCEEECCCCccc-cccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence                     4444444455555554444 34433 233444 555555555544 3344333322  5555556666555


Q ss_pred             cccccccc-------CCCCCCEEEccCCcCCCCChhhHhh-hccccceeecCCCcCCCCcchh-cc-------CCCCCCE
Q 002350          477 GKIKDGLL-------SSTSLQVLDISNNMLSGHIPHWMGN-FSSELEILSMSKNHLEGNVPVQ-LN-------NLERLRI  540 (933)
Q Consensus       477 ~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l~~-~~~~L~~L~L~~n~l~~~~~~~-~~-------~l~~L~~  540 (933)
                      +..|..+.       .+++|++|++++|+++ .+|..+.. ++. |+.|++++|+++ .+|.. +.       ++++|+.
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~-L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~  492 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP-LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTS  492 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC-CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCE
T ss_pred             CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC-CCEEECCCCCCC-CcCHHHhccccccccccCCccE
Confidence            55555554       5556666666666666 45544443 333 666666666666 33332 22       2237777


Q ss_pred             EEccCCcCccccCccc--cCCCCceEEeecCcCcccCchhhccCCCccEEeC------cCCcCcccCchhhhcCCCccEE
Q 002350          541 LDISENRLSGPIASSL--NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL------RDNTFSGRIPHQINEHSNLRFL  612 (933)
Q Consensus       541 L~Ls~n~l~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L  612 (933)
                      |++++|+++.......  .+++|++|+|++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|
T Consensus       493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L  571 (636)
T 4eco_A          493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL  571 (636)
T ss_dssp             EECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             EECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence            7777777774333333  67777888888887776 6777778888888888      5688888999999999999999


Q ss_pred             EcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       613 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +|++|++ +.+|..+.  ++|+.||+++|++.
T Consensus       572 ~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          572 QIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             ECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             ECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            9999999 57888766  89999999999887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-48  Score=471.88  Aligned_cols=461  Identities=21%  Similarity=0.234  Sum_probs=280.3

Q ss_pred             CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCC--ccc------------ceeEecCCCCcEEEEe
Q 002350           26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDC--CHW------------QRVKCNATTGRVMQLS   91 (933)
Q Consensus        26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~--C~w------------~gv~c~~~~~~V~~l~   91 (933)
                      +++..+|++||++||+++.++           +| +.+++ +...+|  |.|            .||+|+. .|||++|+
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----------~W-~~~~~-~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~  329 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----------NW-RYYSG-TINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLS  329 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----------GC-CCCCS-SCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred             cccchHHHHHHHHHHHHcCCC-----------CC-CcCCC-cccccCCccccccccccccccCcCceEecC-CCCEEEEE
Confidence            456788999999999998431           78 43310 111344  999            9999986 69999999


Q ss_pred             cCCCCCCCCCCCCcccccccccCCCCCCCEeeC-CCCCCccccCccccc-------------------------------
Q 002350           92 LKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDL-SVNIFTYDSKVAAYD-------------------------------  139 (933)
Q Consensus        92 l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdL-s~n~~~~~~~~~~~~-------------------------------  139 (933)
                      |++.++   .|..     ++.|.++++|++||| ++|.+.|..+.....                               
T Consensus       330 Ls~~~L---~G~i-----p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          330 LAGFGA---KGRV-----PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             CTTTCC---EEEE-----CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CccCCC---CCcC-----chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            988765   3332     367899999999999 888877663321100                               


Q ss_pred             --------------cC--CCCCCCCEEeCCC--CcCCCcchhhhcCCCCCCEEecCCCcccCc-----------------
Q 002350          140 --------------SL--RSLKQLKILVLGH--NYFDDSIFSYLNTLPSLCTLILHWNRIEGS-----------------  184 (933)
Q Consensus       140 --------------~l--~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-----------------  184 (933)
                                    .+  .....++.+.+..  |.+++ +|..++++++|++|+|++|.+++.                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                          01  1222333444443  66776 788888888888888888888872                 


Q ss_pred             cChhhhc--CCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCc-CCC-CCchhccCCC-------CCCEEECCCCc
Q 002350          185 QTNQGIC--ELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ-LNG-SLPSVISNLT-------SLEYLDLSHNN  253 (933)
Q Consensus       185 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~  253 (933)
                      +| ..++  ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+++++       +|++|++++|.
T Consensus       481 iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 EN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CC-hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            44 4555  88888888888888888888888888888888888887 777 6777666554       88888888888


Q ss_pred             CCCCCCh-hhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCC-CCEEEccCCCCccc
Q 002350          254 FEGMFPL-SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH-LKYLDLSHNKLVGN  331 (933)
Q Consensus       254 l~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~  331 (933)
                      ++ .+|. ..++++++|+.|++++|... .++  .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            87 6663 36777777777777766654 333  5556666666666666666 55666666666 666666666665 5


Q ss_pred             chhHHHhCC--CCCCEEEcCCCCCcCcCcC-C--cc--cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC
Q 002350          332 FPTWLLRNN--PKLEVLLLKNNSFSGILQL-P--KA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG  404 (933)
Q Consensus       332 ~p~~~~~~l--~~L~~L~L~~n~l~~~~~~-~--~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~  404 (933)
                      +|..+. ..  ++|+.|++++|.+.+..+. +  ..  ..++|++|++++|+++ .+|..++..+++|++|++++|.+. 
T Consensus       634 lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-  710 (876)
T 4ecn_A          634 IPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-  710 (876)
T ss_dssp             CCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred             Cchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence            554332 22  2255666666655543210 0  11  2234555555555555 455554444555555555555554 


Q ss_pred             CccccccCCCCCCEEEcCCCcCCCCcchhhhcC-------CCCCCEEECcCCcCCCcCchhhc--ccCcCCeEEccCccc
Q 002350          405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG-------CFSLELLDLSNNNFEGQFFSEYM--NLTRLRHLYFENNNF  475 (933)
Q Consensus       405 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l  475 (933)
                                              .+|...+..       +++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++
T Consensus       711 ------------------------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L  765 (876)
T 4ecn_A          711 ------------------------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF  765 (876)
T ss_dssp             ------------------------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             ------------------------ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence                                    333333222       125555555555555 3444443  555666666666666


Q ss_pred             cccccccccCCCCCCEEEccC------CcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc
Q 002350          476 SGKIKDGLLSSTSLQVLDISN------NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS  549 (933)
Q Consensus       476 ~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  549 (933)
                      ++ +|..+..+++|+.|++++      |++.+.+|..+..++. |+.|+|++|++ +.+|..+.  ++|+.|++++|++.
T Consensus       766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~-L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS-CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred             Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC-CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence            54 455555666666666655      3344444444444433 44444444444 23333332  34444444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-47  Score=451.64  Aligned_cols=495  Identities=18%  Similarity=0.195  Sum_probs=325.6

Q ss_pred             CCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECC
Q 002350          171 LCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLS  250 (933)
Q Consensus       171 L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  250 (933)
                      +++|++++|.+++..+ ..+..+++|++|+|++|.+++..+.+|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        30 l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             CCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            4444444444433322 234444444444444444444444445555555555555555554444455555555555555


Q ss_pred             CCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCC-CCchhhhCCCCCCEEEccCCCCc
Q 002350          251 HNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLV  329 (933)
Q Consensus       251 ~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~  329 (933)
                      +|.+++..+ .                         .+..+++|++|++++|.+++ .+|..+.++++|++|++++|+++
T Consensus       109 ~n~l~~l~~-~-------------------------~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          109 ETNLASLEN-F-------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TSCCCCSTT-C-------------------------SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             ccccccCCC-c-------------------------cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            554432111 0                         01112222222222232322 23555556666666666666665


Q ss_pred             ccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCc----cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC-
Q 002350          330 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFL----HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-  404 (933)
Q Consensus       330 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-  404 (933)
                      +..|.                         .+..+++|    +++++++|.+++..|..+ . ..+|++|++++|.... 
T Consensus       163 ~~~~~-------------------------~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~n~~~~~  215 (570)
T 2z63_A          163 SIYCT-------------------------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-K-EIRLHKLTLRNNFDSLN  215 (570)
T ss_dssp             EECGG-------------------------GGHHHHTCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCTT
T ss_pred             eecHH-------------------------HccchhccchhhhhcccCCCCceecCHHHh-c-cCcceeEeccccccccc
Confidence            33332                         22233344    678888888875444433 3 3378888888774332 


Q ss_pred             CccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccC--cCCeEEccCc-cccccccc
Q 002350          405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT--RLRHLYFENN-NFSGKIKD  481 (933)
Q Consensus       405 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~  481 (933)
                      .++..+..++.++.+.+....+..         ...++.  +.        ...+..++  .++.++++++ .+.+..+.
T Consensus       216 ~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~--~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  276 (570)
T 2z63_A          216 VMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEK--FD--------KSALEGLCNLTIEEFRLAYLDYYLDDIID  276 (570)
T ss_dssp             HHHHHHHTTTTCEEEEEEEEECCC---------CSSCEE--CC--------TTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred             chhhhhcCccccceeeeccccccC---------chhhhh--cc--------hhhhccccccchhhhhhhcchhhhhhchh
Confidence            344556666666666554332221         011110  11        11112222  2456666666 56666667


Q ss_pred             cccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCC
Q 002350          482 GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSV  561 (933)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L  561 (933)
                      .+..+++|++|++++|.+. .+|..+... . |+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|
T Consensus       277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L  349 (570)
T 2z63_A          277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G-WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSL  349 (570)
T ss_dssp             TTGGGTTCSEEEEESCEEC-SCCBCCSCC-C-CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTC
T ss_pred             hhcCcCcccEEEecCccch-hhhhhhccC-C-ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCC
Confidence            7777777777777777776 566666665 4 777777777777 4443  4667888888888887766554 567888


Q ss_pred             ceEEeecCcCcccC--chhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCc-hhhhcCCCCCEEEc
Q 002350          562 EHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDL  638 (933)
Q Consensus       562 ~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L  638 (933)
                      ++|++++|.+++..  |..+..+++|++|++++|++++..+. +..+++|++|++++|++.+..| ..+..+++|+.|++
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            88888888887654  67888899999999999999865444 8889999999999999987766 57889999999999


Q ss_pred             cCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhh
Q 002350          639 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA  718 (933)
Q Consensus       639 s~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  718 (933)
                      ++|.+++..|..+..                                                                 
T Consensus       429 ~~n~l~~~~~~~~~~-----------------------------------------------------------------  443 (570)
T 2z63_A          429 SHTHTRVAFNGIFNG-----------------------------------------------------------------  443 (570)
T ss_dssp             TTSCCEECCTTTTTT-----------------------------------------------------------------
T ss_pred             cCCcccccchhhhhc-----------------------------------------------------------------
Confidence            999998777765543                                                                 


Q ss_pred             hccceeeecCCCCCcccEEEcCCCcCC-CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350          719 MKNRYEIYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  797 (933)
Q Consensus       719 ~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  797 (933)
                                  +++|+.|++++|.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|++++..|
T Consensus       444 ------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          444 ------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             ------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence                        346788999999998 6799999999999999999999999989999999999999999999999888


Q ss_pred             cCCcCCCCCCeEEccCCcCcccCCCC
Q 002350          798 PQLTALNFLSIFNVSYNNLSGRTPDK  823 (933)
Q Consensus       798 ~~l~~l~~L~~L~ls~N~l~g~~p~~  823 (933)
                      ..+..+++|+.|++++|+++|.+|..
T Consensus       512 ~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          512 GIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             HHhhcccCCcEEEecCCcccCCCcch
Confidence            88999999999999999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=440.55  Aligned_cols=494  Identities=22%  Similarity=0.218  Sum_probs=387.9

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL  196 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  196 (933)
                      +++++|||++|.+++..+    .+|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+ ..+..+++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred             ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCcccc
Confidence            579999999999887655    678999999999999999998888889999999999999999987665 678999999


Q ss_pred             CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecc
Q 002350          197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS  275 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  275 (933)
                      ++|++++|.+++..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..+ ..++++++|+.+   
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~~---  178 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLL---  178 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-GGGHHHHTCTTC---
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-HHccchhccchh---
Confidence            999999999988666679999999999999999987 468999999999999999999875433 556666665110   


Q ss_pred             cccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCC--
Q 002350          276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF--  353 (933)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l--  353 (933)
                                        .+.|++++|.+++..|..+... +|+.|++++|.............++.++.+.+....+  
T Consensus       179 ------------------~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          179 ------------------NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             ------------------CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             ------------------hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence                              0234455555554444444433 5666666655433222222223555555444432211  


Q ss_pred             ----cCcCcCCcccCC--CccEEEccCC-cCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcC
Q 002350          354 ----SGILQLPKAKHD--FLHHLDISCN-NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF  426 (933)
Q Consensus       354 ----~~~~~~~~~~~~--~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  426 (933)
                          ..+....+..+.  .++.++++++ .+.+.+|..+. .+++|++|++++|.+. .+|..+..+ +|+.|++++|.+
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~  316 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKF  316 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcc
Confidence                111111222222  3567777777 56666666654 4889999999999887 577778888 899999999988


Q ss_pred             CCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccc--cccccCCCCCCEEEccCCcCCCCCh
Q 002350          427 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKI--KDGLLSSTSLQVLDISNNMLSGHIP  504 (933)
Q Consensus       427 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p  504 (933)
                      . .+|.   ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+ ++
T Consensus       317 ~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~  389 (570)
T 2z63_A          317 G-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS  389 (570)
T ss_dssp             S-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EE
T ss_pred             c-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cc
Confidence            7 6665   4678899999999988776655  67889999999999888554  6678888999999999998874 44


Q ss_pred             hhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCc-ccCchhhcc
Q 002350          505 HWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALN-GLIPGELFR  581 (933)
Q Consensus       505 ~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~  581 (933)
                      ..+..++. |+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..+..+ ++++|++|++++|.+. +.+|..+..
T Consensus       390 ~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~  468 (570)
T 2z63_A          390 SNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  468 (570)
T ss_dssp             EEEETCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             ccccccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence            44667766 9999999999987655 568899999999999999998888887 8999999999999997 578899999


Q ss_pred             CCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCc
Q 002350          582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP  649 (933)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~  649 (933)
                      +++|++|++++|++++..|.++..+++|++|++++|++++..|..+.++++|+.|++++|++++..|.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999998899999999999999999999998888899999999999999999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-45  Score=432.11  Aligned_cols=486  Identities=17%  Similarity=0.164  Sum_probs=373.9

Q ss_pred             CCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCC
Q 002350          118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLF  197 (933)
Q Consensus       118 ~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  197 (933)
                      ...+.|.+++.++. +|    ..+  .++|++|++++|.+++..|..+.++++|++|++++|++++..+ ..+..+++|+
T Consensus         6 ~~~~c~~~~~~l~~-ip----~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~   77 (549)
T 2z81_A            6 ASGVCDGRSRSFTS-IP----SGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLE   77 (549)
T ss_dssp             TTSEEECTTSCCSS-CC----SCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCC
T ss_pred             CCceEECCCCcccc-cc----ccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCC
Confidence            33446666666653 33    222  2577777777777776666777777777777777777766554 4566777777


Q ss_pred             EEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccc
Q 002350          198 EMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST  276 (933)
Q Consensus       198 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~  276 (933)
                      +|+|++|.+++..+..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+|                 
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-----------------  140 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-----------------  140 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-----------------
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-----------------
Confidence            77777777776666667777777777777777665 245566666777777776666433333                 


Q ss_pred             ccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCc
Q 002350          277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI  356 (933)
Q Consensus       277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  356 (933)
                              ...+..+++|++|++++|++++..|..+..+++|++|++++|.+. .+|.+++..+++|++|++++|.+++.
T Consensus       141 --------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          141 --------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             --------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             --------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence                    334566778888899999999889999999999999999999986 78888777899999999999999886


Q ss_pred             CcCC---cccCCCccEEEccCCcCCCCCChhhh---hcCCCccEEEccCCCCCCCc------cccccCCCCCCEEEcCCC
Q 002350          357 LQLP---KAKHDFLHHLDISCNNFRGKLPHNMG---VILQKLMYMDISKNCFEGNI------PYSAGEMKELSLLDLSRN  424 (933)
Q Consensus       357 ~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~n  424 (933)
                      ...+   ...+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+..      ...+..+++|+.|++.++
T Consensus       212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  291 (549)
T 2z81_A          212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL  291 (549)
T ss_dssp             CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred             cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence            3222   24678999999999998765554442   34789999999999876531      123567889999999998


Q ss_pred             cCCCCcc----hhhhcCCCCCCEEECcCCcCCCcCchhh-cccCcCCeEEccCcccccccc---ccccCCCCCCEEEccC
Q 002350          425 YFSGGLS----QSVVTGCFSLELLDLSNNNFEGQFFSEY-MNLTRLRHLYFENNNFSGKIK---DGLLSSTSLQVLDISN  496 (933)
Q Consensus       425 ~l~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~Ls~  496 (933)
                      .+.....    ..++....+|++|++++|.+.. +|..+ ..+++|++|++++|++++.+|   ..+..+++|++|++++
T Consensus       292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  370 (549)
T 2z81_A          292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ  370 (549)
T ss_dssp             BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred             ccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence            7753110    1123345789999999999874 55554 689999999999999998764   3477899999999999


Q ss_pred             CcCCCCCh--hhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350          497 NMLSGHIP--HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL  574 (933)
Q Consensus       497 n~l~~~~p--~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~  574 (933)
                      |++++..+  ..+..++. |++|++++|+++ .+|..+..+++|++|++++|++++.....  .++|++|++++|++++.
T Consensus       371 N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~  446 (549)
T 2z81_A          371 NHLRSMQKTGEILLTLKN-LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF  446 (549)
T ss_dssp             SCCCCHHHHHHHGGGCTT-CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCC
T ss_pred             CcccccccchhhhhcCCC-CCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhh
Confidence            99984322  34667766 999999999999 68888999999999999999987543322  36899999999999875


Q ss_pred             CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC
Q 002350          575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP  648 (933)
Q Consensus       575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p  648 (933)
                      +    ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|++++|++++..|
T Consensus       447 ~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          447 S----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             C----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             c----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            3    57899999999999998 6776 4679999999999999999999999999999999999999998877

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.9e-45  Score=432.65  Aligned_cols=488  Identities=21%  Similarity=0.227  Sum_probs=320.3

Q ss_pred             CcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEe
Q 002350           72 CCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILV  151 (933)
Q Consensus        72 ~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~  151 (933)
                      .|.|.|+ |+....                  .+..++...   .++|++|||++|.+++..+    ..+.++++|++|+
T Consensus         3 ~C~~~~~-c~~~~~------------------~l~~ip~~~---~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~   56 (549)
T 2z81_A            3 SCDASGV-CDGRSR------------------SFTSIPSGL---TAAMKSLDLSFNKITYIGH----GDLRACANLQVLI   56 (549)
T ss_dssp             EECTTSE-EECTTS------------------CCSSCCSCC---CTTCCEEECCSSCCCEECS----STTSSCTTCCEEE
T ss_pred             cCCCCce-EECCCC------------------ccccccccC---CCCccEEECcCCccCccCh----hhhhcCCcccEEE
Confidence            5999999 975322                  222333322   2789999999999887666    6789999999999


Q ss_pred             CCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCC-cchhhcCCCCCCCEEEccCCcC
Q 002350          152 LGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQL  230 (933)
Q Consensus       152 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l  230 (933)
                      +++|.+++..|..|+++++|++|++++|++++..+ ..++++++|++|++++|.+++ ..|..++++++|++|++++|.+
T Consensus        57 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~  135 (549)
T 2z81_A           57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET  135 (549)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             CCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence            99999998888899999999999999999987766 568999999999999999987 4577899999999999999985


Q ss_pred             CCCCc-hhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCC-
Q 002350          231 NGSLP-SVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSY-  308 (933)
Q Consensus       231 ~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-  308 (933)
                      .+.+| ..+.++++|++|++++|.+++..| ..++++++|++|+++.+... .++...+..+++|++|++++|++++.. 
T Consensus       136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~  213 (549)
T 2z81_A          136 FSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQF  213 (549)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCC
T ss_pred             ccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccc
Confidence            44444 689999999999999999987666 56778888888888776542 222222334677888888888877642 


Q ss_pred             -c-hhhhCCCCCCEEEccCCCCcccchhHHH---hCCCCCCEEEcCCCCCcCcCcCC------cccCCCccEEEccCCcC
Q 002350          309 -P-DFLLHQYHLKYLDLSHNKLVGNFPTWLL---RNNPKLEVLLLKNNSFSGILQLP------KAKHDFLHHLDISCNNF  377 (933)
Q Consensus       309 -p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~Ls~n~l  377 (933)
                       | .....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+....+      +..+.+|+.|++.++.+
T Consensus       214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  293 (549)
T 2z81_A          214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI  293 (549)
T ss_dssp             CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred             cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence             1 2234567788888888877765554432   34677788888887776653221      23455666666666654


Q ss_pred             CCC-----CChhhhhcCCCccEEEccCCCCCCCccccc-cCCCCCCEEEcCCCcCCCCcchh--hhcCCCCCCEEECcCC
Q 002350          378 RGK-----LPHNMGVILQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNYFSGGLSQS--VVTGCFSLELLDLSNN  449 (933)
Q Consensus       378 ~~~-----~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~~~~l~~L~~L~Ls~n  449 (933)
                      ...     ++. +....++|++|++++|.+. .+|..+ ..+++|++|++++|++.+.++..  .+..+++|++|++++|
T Consensus       294 ~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          294 PQFYLFYDLST-VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             SCGGGSCCCCH-HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred             chhhhcccchh-hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence            321     111 1122445555555555554 334333 34555555555555554433321  1234445555555555


Q ss_pred             cCCCcCc--hhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCC
Q 002350          450 NFEGQFF--SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN  527 (933)
Q Consensus       450 ~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~  527 (933)
                      ++++..+  ..+..+++|++|++++|+++ .+|..+..+++                         |++|++++|++++ 
T Consensus       372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~-------------------------L~~L~Ls~N~l~~-  424 (549)
T 2z81_A          372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK-------------------------MRFLNLSSTGIRV-  424 (549)
T ss_dssp             CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT-------------------------CCEEECTTSCCSC-
T ss_pred             cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc-------------------------ccEEECCCCCccc-
Confidence            5543321  23444445555555555444 34444444444                         5555555554442 


Q ss_pred             cchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCC
Q 002350          528 VPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS  607 (933)
Q Consensus       528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  607 (933)
                      +|..+  .++|++|++++|++++.+   ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..++
T Consensus       425 l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          425 VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred             ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence            22221  135666666666665532   24667777777777776 4454 35677888888888888887777888888


Q ss_pred             CccEEEcCCCcCCCCCc
Q 002350          608 NLRFLLLGGNHLQGPIP  624 (933)
Q Consensus       608 ~L~~L~L~~N~l~~~~p  624 (933)
                      +|++|++++|++.+..|
T Consensus       498 ~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          498 SLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             ccCEEEecCCCccCCCc
Confidence            88888888888887766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-46  Score=447.86  Aligned_cols=437  Identities=19%  Similarity=0.256  Sum_probs=339.4

Q ss_pred             CcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCC------cc------cchhHHHhCCCCCCEEEcCCCCCcCcCcC
Q 002350          292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL------VG------NFPTWLLRNNPKLEVLLLKNNSFSGILQL  359 (933)
Q Consensus       292 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  359 (933)
                      .+++.|+|+++++.|.+|..++++++|++|+|++|.+      .+      .+|....   ..|+ ++++++.+.+..+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~---~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK---QKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHH---HHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHH---HHHH-hhHHHhhhccCchh
Confidence            4678899999999999999999999999999999865      22      3333321   2233 34443333322111


Q ss_pred             Ccc-------------------cCCCccEEEcc--CCcCCCCCChhhhhcCCCccEEEccCCCCCCC-------------
Q 002350          360 PKA-------------------KHDFLHHLDIS--CNNFRGKLPHNMGVILQKLMYMDISKNCFEGN-------------  405 (933)
Q Consensus       360 ~~~-------------------~~~~L~~L~Ls--~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~-------------  405 (933)
                      .+.                   ....++.+.+.  .|++++ +|..++. +++|++|++++|.+++.             
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccch
Confidence            111                   11122222222  567876 8887764 89999999999999875             


Q ss_pred             ----cccccc--CCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCc-CCC-cCchhhccc------CcCCeEEcc
Q 002350          406 ----IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL------TRLRHLYFE  471 (933)
Q Consensus       406 ----~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~  471 (933)
                          +|..++  ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..+      ++|++|+++
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence                888888  89999999999999888888654 688899999999998 888 788887776      899999999


Q ss_pred             Cccccccccc--cccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCC-CCEEEccCCcC
Q 002350          472 NNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRL  548 (933)
Q Consensus       472 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l  548 (933)
                      +|+++ .+|.  .+..+++|++|++++|+++|.+| .+..++. |+.|++++|+++ .+|..+..+++ |+.|++++|++
T Consensus       314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence            99998 7887  88899999999999999988888 7777776 999999999988 78888888888 99999999998


Q ss_pred             ccccCccc-c--CCCCceEEeecCcCcccCchhhc-------cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCc
Q 002350          549 SGPIASSL-N--LSSVEHLSLQKNALNGLIPGELF-------RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH  618 (933)
Q Consensus       549 ~~~~~~~~-~--l~~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (933)
                      + .+|..+ .  +++|++|++++|.+.+.+|..+.       .+++|++|++++|++++..+..+..+++|++|+|++|+
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence            8 566655 3  44899999999999988888887       77889999999999984434445668899999999999


Q ss_pred             CCCCCchh-hhcC-------CCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCC
Q 002350          619 LQGPIPDQ-LCQL-------QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS  690 (933)
Q Consensus       619 l~~~~p~~-l~~l-------~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (933)
                      ++ .+|.. +...       ++|+.|++++|+++ .+|..+..                                     
T Consensus       469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------------------  509 (636)
T 4eco_A          469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------------------------  509 (636)
T ss_dssp             CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------------------
T ss_pred             CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------------------
Confidence            98 55544 3333       28999999999988 66654430                                     


Q ss_pred             ccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeec------c
Q 002350          691 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL------S  764 (933)
Q Consensus       691 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L------s  764 (933)
                                                            ..+++|+.|||++|++++ +|..++.+++|+.|+|      +
T Consensus       510 --------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          510 --------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             --------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             --------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence                                                  023467889999999997 8888999999999999      5


Q ss_pred             ccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          765 NNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       765 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      +|++.+.+|..++++++|++|||++|++ +.+|..+.  ++|+.||+++|++...-+
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence            6788889999999999999999999999 68888766  789999999998875443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.6e-43  Score=424.07  Aligned_cols=277  Identities=20%  Similarity=0.247  Sum_probs=181.5

Q ss_pred             hcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCC
Q 002350          459 YMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL  538 (933)
Q Consensus       459 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  538 (933)
                      +....+++.+.+.++.+....  .+.....++.|++.+|.+.+..+.   .+.. |+.+++.+|......  ....+++|
T Consensus       302 ~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~-L~~l~l~~n~~~~~~--~~~~l~~L  373 (635)
T 4g8a_A          302 FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKS-LKRLTFTSNKGGNAF--SEVDLPSL  373 (635)
T ss_dssp             TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTT-CCEEEEESCCSCCBC--CCCBCTTC
T ss_pred             hhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchh-hhhcccccccCCCCc--cccccccc
Confidence            444566666666666655322  234455677777777766533222   1223 666666666655322  24456777


Q ss_pred             CEEEccCCcCccc--cCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCc-hhhhcCCCccEEEc
Q 002350          539 RILDISENRLSGP--IASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLL  614 (933)
Q Consensus       539 ~~L~Ls~n~l~~~--~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L  614 (933)
                      +.+++++|.+...  .+... .+.+|+.+++..|..... +..+..+++|+.+++++|......+ ..+..+++++.+++
T Consensus       374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l  452 (635)
T 4g8a_A          374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  452 (635)
T ss_dssp             CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred             ccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccc
Confidence            7777777766432  22222 566777777777666543 4456667777777777776654433 44566777777777


Q ss_pred             CCCcCCCCCchhhhcCCCCCEEEccCCcCCC-CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccc
Q 002350          615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM  693 (933)
Q Consensus       615 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (933)
                      +.|.+.+..+..+..+++|+.|++++|++.+ .+|..+.                                         
T Consensus       453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~-----------------------------------------  491 (635)
T 4g8a_A          453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-----------------------------------------  491 (635)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----------------------------------------
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccCchhhh-----------------------------------------
Confidence            7777777777777777777777777776432 2233222                                         


Q ss_pred             cchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc
Q 002350          694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP  773 (933)
Q Consensus       694 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p  773 (933)
                                                          .+++|+.|||++|++++.+|..|+.+++|++|+|++|+|++.+|
T Consensus       492 ------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  535 (635)
T 4g8a_A          492 ------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  535 (635)
T ss_dssp             ------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred             ------------------------------------hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence                                                23456778888888887777778888888888888888887777


Q ss_pred             hhccCCCCCCEEECcCCeecccCCcCCcCC-CCCCeEEccCCcCcccCC
Q 002350          774 ESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       774 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~~p  821 (933)
                      ..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++|.+.
T Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            778888888888888888888778777777 578888887777766554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-44  Score=419.48  Aligned_cols=457  Identities=22%  Similarity=0.247  Sum_probs=289.9

Q ss_pred             CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350          120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM  199 (933)
Q Consensus       120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  199 (933)
                      ++||+++|.++. +|    ..+.  ++|++|++++|.+++..|..|.++++|++|+|++|++++..| ..++++++|++|
T Consensus         3 ~~l~ls~n~l~~-ip----~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VP----KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSS-CC----CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEE
T ss_pred             ceEecCCCCccc-cc----cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEE
Confidence            467888887763 44    2333  788888888888887777888888888888888888877655 567888888888


Q ss_pred             ECCCCCCCCcchhhcCCCCCCCEEEccCCcCCC-CCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEeccccc
Q 002350          200 NLERNFIGSPLITCLKNLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN  278 (933)
Q Consensus       200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~  278 (933)
                      +|++|.+++ +|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++    ..+..+++|         
T Consensus        75 ~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L---------  138 (520)
T 2z7x_B           75 DLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL---------  138 (520)
T ss_dssp             ECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTS---------
T ss_pred             ecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccc---------
Confidence            888888874 5555  78888888888888876 467788888888888888888764    233444443         


Q ss_pred             CccccccCCCCCCCcceEEEccCCCC--CCCCchhhhCCC-CCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCC---
Q 002350          279 NTLHVKTENWLPTSQLIVLGLTKCNL--NGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS---  352 (933)
Q Consensus       279 ~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~---  352 (933)
                                    +|+.|++++|.+  .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++|.   
T Consensus       139 --------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  204 (520)
T 2z7x_B          139 --------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN  204 (520)
T ss_dssp             --------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred             --------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence                          124455555555  444555544443 223455566665555554444455555555555554   


Q ss_pred             ----CcCcCcCCcccCCCccEEEccCCcCCCCCChhhhh--cCCCccEEEccCCCCCCCccccc-----cCCCCCCEEEc
Q 002350          353 ----FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV--ILQKLMYMDISKNCFEGNIPYSA-----GEMKELSLLDL  421 (933)
Q Consensus       353 ----l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L  421 (933)
                          +.+..+ .+..+++|+.|++++|.+++..+..+..  ..++|++|++++|.+.+.+|..+     ..+++|+.+++
T Consensus       205 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l  283 (520)
T 2z7x_B          205 KCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV  283 (520)
T ss_dssp             TTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred             ccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence                222211 2345555566666555554322222211  13466666666666666666555     55556666666


Q ss_pred             CCCcCCCCcchhhhcCC---CCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCc
Q 002350          422 SRNYFSGGLSQSVVTGC---FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM  498 (933)
Q Consensus       422 s~n~l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  498 (933)
                      ++|.+  .+|...+..+   .+|+.|++++|.+....                          ....+++|++|++++|+
T Consensus       284 ~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~~L~Ls~n~  335 (520)
T 2z7x_B          284 VSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CPSKISPFLHLDFSNNL  335 (520)
T ss_dssp             EECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCCCCEEECCSSC
T ss_pred             cccce--ecchhhhhcccccCceeEEEcCCCcccccc--------------------------chhhCCcccEEEeECCc
Confidence            65555  3442111111   33444444444443221                          11344555555555555


Q ss_pred             CCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCEEEccCCcCccccCcc-c-cCCCCceEEeecCcCccc
Q 002350          499 LSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSGPIASS-L-NLSSVEHLSLQKNALNGL  574 (933)
Q Consensus       499 l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~-~l~~L~~L~L~~n~l~~~  574 (933)
                      +++.+|..+..++. |++|++++|++++  .+|..+..+++|++|++++|++.+.+|.. + .+++|++|++++|++++.
T Consensus       336 l~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~  414 (520)
T 2z7x_B          336 LTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT  414 (520)
T ss_dssp             CCTTTTTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred             cChhhhhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence            55545555554444 5555555555554  34455666777777777777776644432 3 667777777777777766


Q ss_pred             CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch-hhhcCCCCCEEEccCCcCCCCCC
Q 002350          575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIP  648 (933)
Q Consensus       575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p  648 (933)
                      +|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|. .+..+++|+.|++++|++++..+
T Consensus       415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            666554  68999999999998 788888899999999999999995 555 48899999999999999987655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.9e-44  Score=418.94  Aligned_cols=461  Identities=20%  Similarity=0.214  Sum_probs=301.3

Q ss_pred             CEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCC
Q 002350          172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH  251 (933)
Q Consensus       172 ~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  251 (933)
                      ++||+++|.++.. | ..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~~i-p-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHV-P-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSC-C-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcccc-c-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            4677777777643 3 1232  6677777777776666666666667777777777766665566666666666666666


Q ss_pred             CcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcc-
Q 002350          252 NNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG-  330 (933)
Q Consensus       252 n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-  330 (933)
                      |.+++ +                                                  |..  .+++|++|++++|++++ 
T Consensus        79 N~l~~-l--------------------------------------------------p~~--~l~~L~~L~L~~N~l~~~  105 (520)
T 2z7x_B           79 NKLVK-I--------------------------------------------------SCH--PTVNLKHLDLSFNAFDAL  105 (520)
T ss_dssp             SCCCE-E--------------------------------------------------ECC--CCCCCSEEECCSSCCSSC
T ss_pred             Cceee-c--------------------------------------------------Ccc--ccCCccEEeccCCccccc
Confidence            66541 1                                                  111  45667777777777764 


Q ss_pred             cchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCc--cEEEccCCCC--CCCc
Q 002350          331 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL--MYMDISKNCF--EGNI  406 (933)
Q Consensus       331 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~Ls~n~l--~~~~  406 (933)
                      .+|..+. .+++|++|++++|.+++.   .+..                         +++|  ++|++++|.+  .+..
T Consensus       106 ~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~-------------------------l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B          106 PICKEFG-NMSQLKFLGLSTTHLEKS---SVLP-------------------------IAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             CCCGGGG-GCTTCCEEEEEESSCCGG---GGGG-------------------------GTTSCEEEEEEEECTTTTSSCC
T ss_pred             cchhhhc-cCCcceEEEecCcccchh---hccc-------------------------cccceeeEEEeecccccccccc
Confidence            3444443 555666555555555431   2223                         3344  5555555554  4444


Q ss_pred             cccccCCC-CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccC
Q 002350          407 PYSAGEMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS  485 (933)
Q Consensus       407 p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  485 (933)
                      |..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.......                 .+.+.++ .+..
T Consensus       157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~-~l~~  218 (520)
T 2z7x_B          157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA-KLQT  218 (520)
T ss_dssp             TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH-GGGG
T ss_pred             cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh-hhcc
Confidence            44443333 122345555555544444444444445555554443100000                 0222333 3445


Q ss_pred             CCCCCEEEccCCcCCCCChhhHhh---hccccceeecCCCcCCCCcchhc-----cCCCCCCEEEccCCcCccccC-ccc
Q 002350          486 STSLQVLDISNNMLSGHIPHWMGN---FSSELEILSMSKNHLEGNVPVQL-----NNLERLRILDISENRLSGPIA-SSL  556 (933)
Q Consensus       486 l~~L~~L~Ls~n~l~~~~p~~l~~---~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~~  556 (933)
                      +++|+.|++++|.+++..+..+..   .+ +|++|++++|++++.+|..+     ..+++|+.+++++|.+  .+| ..+
T Consensus       219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~  295 (520)
T 2z7x_B          219 NPKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI  295 (520)
T ss_dssp             CTTCCEEEEEEEEEEHHHHHHHHHHHHTS-SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred             ccchhhccccccccCHHHHHHHHHHhhhC-cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence            555555555555554332222211   12 37777777777776677666     7778888888888877  333 222


Q ss_pred             -c---CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCC--CCchhhhcC
Q 002350          557 -N---LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG--PIPDQLCQL  630 (933)
Q Consensus       557 -~---l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l  630 (933)
                       .   ..+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+
T Consensus       296 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred             hcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC
Confidence             2   256888888888876432  12577889999999999998888888899999999999999986  456788999


Q ss_pred             CCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhch
Q 002350          631 QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAID  710 (933)
Q Consensus       631 ~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  710 (933)
                      ++|+.|++++|++++.+|....                                                          
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~----------------------------------------------------------  395 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDC----------------------------------------------------------  395 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSC----------------------------------------------------------
T ss_pred             CCCCEEECCCCcCCcccccchh----------------------------------------------------------
Confidence            9999999999999876664310                                                          


Q ss_pred             hhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCC
Q 002350          711 ERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYN  790 (933)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  790 (933)
                                        ..+++|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+.++++|++|||++|
T Consensus       396 ------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          396 ------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             ------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             ------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence                              1234688899999999988887765  78999999999999 78888889999999999999


Q ss_pred             eecccCCcC-CcCCCCCCeEEccCCcCcccCC
Q 002350          791 KLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       791 ~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      +++ .+|.. +..+++|++|++++|+++|.++
T Consensus       455 ~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          455 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999 56665 8999999999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.3e-42  Score=415.76  Aligned_cols=545  Identities=19%  Similarity=0.192  Sum_probs=374.9

Q ss_pred             CCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEE
Q 002350          145 KQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILD  224 (933)
Q Consensus       145 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  224 (933)
                      +++++|||++|+|++..+..|.++++|++|||++|+|++..+ ..|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            367777777777776666677777777777777777765544 4566677777777777776665556666777777777


Q ss_pred             ccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCC
Q 002350          225 ISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNL  304 (933)
Q Consensus       225 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  304 (933)
                      |++|++++..+..|+++++|++|++++|.+++.                                               
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------------------------------------------  163 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------------------------------  163 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccC-----------------------------------------------
Confidence            777776655555666666666666666665421                                               


Q ss_pred             CCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChh
Q 002350          305 NGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHN  384 (933)
Q Consensus       305 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  384 (933)
                        ..|..+..+++|++|++++|++++..|..+. .+.+++                    .....++++.|.+. .++..
T Consensus       164 --~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~--------------------~~~~~~~ls~n~l~-~i~~~  219 (635)
T 4g8a_A          164 --KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMP--------------------LLNLSLDLSLNPMN-FIQPG  219 (635)
T ss_dssp             --CCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCT--------------------TCCCEEECTTCCCC-EECTT
T ss_pred             --CCchhhccchhhhhhcccCcccccccccccc-chhhhh--------------------hhhhhhhcccCccc-ccCcc
Confidence              2456677778888888888888755554332 222111                    11234455555554 23333


Q ss_pred             hhhcCCCccEEEccCCCCCCC-ccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccC
Q 002350          385 MGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLT  463 (933)
Q Consensus       385 ~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  463 (933)
                      .+. ...++.+++.+|..... .+..+..+..++...+..+....                   ...+.......+....
T Consensus       220 ~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-------------------~~~l~~~~~~~~~~~~  279 (635)
T 4g8a_A          220 AFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-------------------EGNLEKFDKSALEGLC  279 (635)
T ss_dssp             TTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT-------------------SCCCSCCCTTTTGGGG
T ss_pred             ccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc-------------------cccccccccccccccc
Confidence            322 33455566655543321 22234445555544443322210                   0111122233344455


Q ss_pred             cCCeEEccCcccc---ccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCE
Q 002350          464 RLRHLYFENNNFS---GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI  540 (933)
Q Consensus       464 ~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  540 (933)
                      .+....+..+...   ......+.....++.+++.++.+.. ++ .+..... ++.|++.+|.+.+..+   ..++.|+.
T Consensus       280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~-~~~~~~~-L~~L~l~~~~~~~~~~---~~l~~L~~  353 (635)
T 4g8a_A          280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNFG-WQHLELVNCKFGQFPT---LKLKSLKR  353 (635)
T ss_dssp             GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG-GGGSCCC-CSEEEEESCEESSCCC---CBCTTCCE
T ss_pred             chhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-cc-ccccchh-hhhhhcccccccCcCc---ccchhhhh
Confidence            5555555544322   2234445667789999999998763 32 2333444 9999999999875444   34678999


Q ss_pred             EEccCCcCccccCccccCCCCceEEeecCcCc--ccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCc
Q 002350          541 LDISENRLSGPIASSLNLSSVEHLSLQKNALN--GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH  618 (933)
Q Consensus       541 L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (933)
                      +++..|.+.... ....+++|+.|++++|.+.  +..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++++|.
T Consensus       354 l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~  431 (635)
T 4g8a_A          354 LTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN  431 (635)
T ss_dssp             EEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSE
T ss_pred             cccccccCCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcc
Confidence            999999876543 3347899999999999885  3456777888999999999998874 55677889999999999988


Q ss_pred             CCCCCc-hhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchh
Q 002350          619 LQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW  697 (933)
Q Consensus       619 l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (933)
                      .....+ ..+..+++++.+++++|.+.+..|..+..                                            
T Consensus       432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------------------------------------------  467 (635)
T 4g8a_A          432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------------  467 (635)
T ss_dssp             EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccc--------------------------------------------
Confidence            776554 56889999999999999998766654432                                            


Q ss_pred             hhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC-CCCCChhhhhccccCeeeccccccccccchhc
Q 002350          698 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL-TGEIPSDIGQLQAILALNLSNNSLSGSIPESF  776 (933)
Q Consensus       698 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~  776 (933)
                                                       ++.++.|+|++|.+ .+.+|..++.+++|++|+|++|++++.+|..|
T Consensus       468 ---------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f  514 (635)
T 4g8a_A          468 ---------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  514 (635)
T ss_dssp             ---------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ---------------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence                                             34678899999985 45678899999999999999999999999999


Q ss_pred             cCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcC-CccCcccccCCCCCCCccccC-------
Q 002350          777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQF-ATFDESSYRGNPSLCAWLIQQ-------  847 (933)
Q Consensus       777 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~-~~~~~~~~~gN~~lc~~~l~~-------  847 (933)
                      +++++|++|+|++|+|++..|..|..+++|++||+++|+|++.+|.. ..+ .++....+.|||+.|+|.+.+       
T Consensus       515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~  594 (635)
T 4g8a_A          515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD  594 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999865 233 467778899999999987431       


Q ss_pred             CCCCCCCCCccCCCCCCcc
Q 002350          848 KYSRTLKPTTTQASGAEEE  866 (933)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~  866 (933)
                      .-........+.|..|+..
T Consensus       595 ~~~~~~~~~~~~C~~P~~~  613 (635)
T 4g8a_A          595 QRQLLVEVERMECATPSDK  613 (635)
T ss_dssp             TTTTBSCGGGCBBCSSTTT
T ss_pred             CCCccCCCCCceeCCchHH
Confidence            2222233345678776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-43  Score=426.89  Aligned_cols=439  Identities=19%  Similarity=0.249  Sum_probs=336.7

Q ss_pred             CcceEEEccCCCCCCCCchhhhCCCCCCEEEc-cCCCCcccchhHHHhCCCCCC-----EEE-------c---CCCCCc-
Q 002350          292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL-SHNKLVGNFPTWLLRNNPKLE-----VLL-------L---KNNSFS-  354 (933)
Q Consensus       292 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~-------L---~~n~l~-  354 (933)
                      .+++.|+|+++++.|.+|..++++++|++|+| ++|.++|..|.........+.     .+.       +   ....+. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46788888888888888888888888888888 777666553321000000000     000       0   000000 


Q ss_pred             ----------CcCcCCcccCCCccEEEccC--CcCCCCCChhhhhcCCCccEEEccCCCCCC-----------------C
Q 002350          355 ----------GILQLPKAKHDFLHHLDISC--NNFRGKLPHNMGVILQKLMYMDISKNCFEG-----------------N  405 (933)
Q Consensus       355 ----------~~~~~~~~~~~~L~~L~Ls~--n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-----------------~  405 (933)
                                ............++.+.+..  |++++ +|..+.. +++|++|+|++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                      00001111222334444443  77776 8887764 8999999999999987                 3


Q ss_pred             cccccc--CCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCc-CCC-cCchhhcccC-------cCCeEEccCcc
Q 002350          406 IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNLT-------RLRHLYFENNN  474 (933)
Q Consensus       406 ~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~  474 (933)
                      +|..++  ++++|++|+|++|.+.+.+|.. +..+++|++|++++|+ +++ .+|..+..++       +|++|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            888877  9999999999999998888855 4688999999999998 888 7887777665       99999999999


Q ss_pred             ccccccc--cccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCC-CCEEEccCCcCccc
Q 002350          475 FSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRLSGP  551 (933)
Q Consensus       475 l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~  551 (933)
                      ++ .+|.  .+..+++|++|++++|+++ .+| .+..++. |+.|++++|+++ .+|..+..+++ |+.|++++|++. .
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            98 7888  8999999999999999998 888 7777776 999999999999 78888999998 999999999998 5


Q ss_pred             cCccc-cC--CCCceEEeecCcCcccCchhh---c--cCCCccEEeCcCCcCcccCchhh-hcCCCccEEEcCCCcCCCC
Q 002350          552 IASSL-NL--SSVEHLSLQKNALNGLIPGEL---F--RSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGP  622 (933)
Q Consensus       552 ~~~~~-~l--~~L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~  622 (933)
                      +|..+ .+  ++|+.|++++|++.+.+|...   .  .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~  711 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S  711 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence            66665 33  459999999999988766322   2  3458999999999999 556554 58899999999999999 5


Q ss_pred             Cchhhhc--------CCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcccc
Q 002350          623 IPDQLCQ--------LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  694 (933)
Q Consensus       623 ~p~~l~~--------l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (933)
                      +|..+..        +++|+.|+|++|+++ .+|..+..                                         
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-----------------------------------------  749 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-----------------------------------------  749 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-----------------------------------------
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-----------------------------------------
Confidence            6655433        238999999999998 67765430                                         


Q ss_pred             chhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccc------ccc
Q 002350          695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSL  768 (933)
Q Consensus       695 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l  768 (933)
                                                        ..+++|+.|||++|++++ +|..++.+++|+.|+|++      |++
T Consensus       750 ----------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          750 ----------------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             ----------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             ----------------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence                                              124578889999999997 899999999999999976      889


Q ss_pred             ccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          769 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       769 ~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      .+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence            999999999999999999999999 79998876  699999999999876554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-41  Score=398.46  Aligned_cols=324  Identities=17%  Similarity=0.191  Sum_probs=224.8

Q ss_pred             cEEEccCCCC--CCCccccccCCC-CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350          393 MYMDISKNCF--EGNIPYSAGEMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY  469 (933)
Q Consensus       393 ~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  469 (933)
                      ++|++++|.+  ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|+....               
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---------------  236 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ---------------  236 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH---------------
T ss_pred             eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc---------------
Confidence            6666666655  555555554433 1113455666655545444444455555555555431100               


Q ss_pred             ccCccccccccccccCCCCCCEEEccCCcCCCCC----hhhHhhhccccceeecCCCcCCCCcchhc-----cCCCCCCE
Q 002350          470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI----PHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRI  540 (933)
Q Consensus       470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~  540 (933)
                          .+.+ ....+..++.|+.+++.++.+.+..    +..+. .. +|++|++++|.+++.+|..+     ..++.|+.
T Consensus       237 ----~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~-~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~  309 (562)
T 3a79_B          237 ----RLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PR-PVEYLNIYNLTITERIDREEFTYSETALKSLMI  309 (562)
T ss_dssp             ----HHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TS-SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred             ----hHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cc-cccEEEEeccEeeccccchhhhcccccchheeh
Confidence                0111 1122344455555555555544221    11111 12 37777777777777777666     66666777


Q ss_pred             EEccCCcCccccCc-cc----cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC
Q 002350          541 LDISENRLSGPIAS-SL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG  615 (933)
Q Consensus       541 L~Ls~n~l~~~~~~-~~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  615 (933)
                      ++++.+.+  .+|. .+    ...+|++|++++|.+....  ....+++|++|++++|++++..|..+..+++|++|+++
T Consensus       310 ~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  385 (562)
T 3a79_B          310 EHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ  385 (562)
T ss_dssp             EEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred             hhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence            77777766  3331 11    2367899999999876432  12678899999999999998899999999999999999


Q ss_pred             CCcCCCC--CchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccc
Q 002350          616 GNHLQGP--IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM  693 (933)
Q Consensus       616 ~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (933)
                      +|++++.  +|..+.++++|+.|++++|++++.+|....                                         
T Consensus       386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----------------------------------------  424 (562)
T 3a79_B          386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-----------------------------------------  424 (562)
T ss_dssp             SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-----------------------------------------
T ss_pred             CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-----------------------------------------
Confidence            9999973  356789999999999999999976765311                                         


Q ss_pred             cchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc
Q 002350          694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP  773 (933)
Q Consensus       694 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p  773 (933)
                                                         ..+++|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|
T Consensus       425 -----------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip  466 (562)
T 3a79_B          425 -----------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP  466 (562)
T ss_dssp             -----------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred             -----------------------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccC
Confidence                                               1234788899999999988887765  78999999999999 688


Q ss_pred             hhccCCCCCCEEECcCCeecccCCcC-CcCCCCCCeEEccCCcCcccCCC
Q 002350          774 ESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       774 ~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      ..+.++++|++|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus       467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            77789999999999999999 56665 99999999999999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-40  Score=393.89  Aligned_cols=180  Identities=23%  Similarity=0.336  Sum_probs=125.5

Q ss_pred             CcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCE
Q 002350          463 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRI  540 (933)
Q Consensus       463 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~  540 (933)
                      .+|++|++++|.+....  ....+++|++|++++|++++.+|..+..++. |+.|++++|++++  .+|..+.++++|+.
T Consensus       331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            34555555555443211  1134556666666666666555555555555 6666666666664  23455777777888


Q ss_pred             EEccCCcCccccCc-cc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCc
Q 002350          541 LDISENRLSGPIAS-SL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH  618 (933)
Q Consensus       541 L~Ls~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  618 (933)
                      |++++|++++.+|. .+ .+++|++|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|+|++|+
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred             EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence            88888887774443 34 678888888888888776665543  68999999999998 677777789999999999999


Q ss_pred             CCCCCchh-hhcCCCCCEEEccCCcCCCCCCc
Q 002350          619 LQGPIPDQ-LCQLQKLAMMDLSRNKFSGSIPP  649 (933)
Q Consensus       619 l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~  649 (933)
                      +++ +|.. +..+++|+.|++++|++++..|.
T Consensus       485 l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          485 LKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            995 5554 88999999999999999976653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-39  Score=373.89  Aligned_cols=375  Identities=19%  Similarity=0.223  Sum_probs=290.5

Q ss_pred             EEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcC
Q 002350          369 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN  448 (933)
Q Consensus       369 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  448 (933)
                      .++.+++.++ .+|. +   .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555566655 5565 2   467777777777777666777777777777777777776666666667777788888888


Q ss_pred             CcCCCcCchhhcccCcCCeEEccCcccccccccc--ccCCCCCCEEEccCCcCCCCChhh-HhhhccccceeecCCCcCC
Q 002350          449 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG--LLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLE  525 (933)
Q Consensus       449 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~L~~L~L~~n~l~  525 (933)
                      |.+.+..|..+.++++|++|++++|.+++..+..  +..+++|++|++++|++++..|.. +..++. |++|++++|+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBS
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCccc
Confidence            8777777777777788888888888777644443  777778888888888877666655 555655 888888888877


Q ss_pred             CCcchhccCC--CCCCEEEccCCcCccccCcc---------ccCCCCceEEeecCcCcccCchhhccC---CCccEEeCc
Q 002350          526 GNVPVQLNNL--ERLRILDISENRLSGPIASS---------LNLSSVEHLSLQKNALNGLIPGELFRS---CKLVTLNLR  591 (933)
Q Consensus       526 ~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls  591 (933)
                      +..+..+..+  .+|+.|++++|.+.+..+..         +.+++|++|++++|++.+..|..+...   ++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            7777766655  67778888888776654432         245678888888888887777766554   788888888


Q ss_pred             CCcCccc----------Cchhhhc--CCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhcccc
Q 002350          592 DNTFSGR----------IPHQINE--HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV  659 (933)
Q Consensus       592 ~N~l~~~----------~p~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~  659 (933)
                      +|.+.+.          .+..+..  .++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.+      
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  321 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------  321 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence            8755432          2222322  368999999999999989999999999999999999998766665543      


Q ss_pred             CCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEc
Q 002350          660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL  739 (933)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  739 (933)
                                                                                             +++|+.|||
T Consensus       322 -----------------------------------------------------------------------l~~L~~L~L  330 (455)
T 3v47_A          322 -----------------------------------------------------------------------LTHLLKLNL  330 (455)
T ss_dssp             -----------------------------------------------------------------------CTTCCEEEC
T ss_pred             -----------------------------------------------------------------------cccCCEEEC
Confidence                                                                                   346788999


Q ss_pred             CCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCccc
Q 002350          740 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR  819 (933)
Q Consensus       740 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  819 (933)
                      ++|++++..|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            99999988899999999999999999999999999999999999999999999987777889999999999999999999


Q ss_pred             CCCCCcC
Q 002350          820 TPDKGQF  826 (933)
Q Consensus       820 ~p~~~~~  826 (933)
                      +|....+
T Consensus       411 ~~~~~~l  417 (455)
T 3v47_A          411 CPRIDYL  417 (455)
T ss_dssp             TTTTHHH
T ss_pred             CCcchHH
Confidence            9965433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.5e-39  Score=367.79  Aligned_cols=420  Identities=20%  Similarity=0.261  Sum_probs=165.8

Q ss_pred             CCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceE
Q 002350          193 LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL  272 (933)
Q Consensus       193 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  272 (933)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+.+++..|..                  
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------------   70 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------------   70 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------------
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------------
Confidence            34555555555555 44555566666666666666666555555555555443333322210                  


Q ss_pred             ecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCC
Q 002350          273 LLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS  352 (933)
Q Consensus       273 ~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~  352 (933)
                                         .++++|++++|++++ +|..   .++|++|++++|.+++ +|.    ..++|++|++++|.
T Consensus        71 -------------------~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~  122 (454)
T 1jl5_A           71 -------------------RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNN  122 (454)
T ss_dssp             -------------------HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSC
T ss_pred             -------------------cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCc
Confidence                               122334444444432 1211   2355555665555553 442    23455555555555


Q ss_pred             CcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcch
Q 002350          353 FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ  432 (933)
Q Consensus       353 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  432 (933)
                      ++++...+    ++|++|++++|++++ +| .+ ..+++|++|++++|.+++ +|..   .++|++|++++|++.+ +|.
T Consensus       123 l~~l~~~~----~~L~~L~L~~n~l~~-lp-~~-~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~  190 (454)
T 1jl5_A          123 LKALSDLP----PLLEYLGVSNNQLEK-LP-EL-QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE  190 (454)
T ss_dssp             CSCCCSCC----TTCCEEECCSSCCSS-CC-CC-TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC
T ss_pred             cCcccCCC----CCCCEEECcCCCCCC-Cc-cc-CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc
Confidence            54432211    344555555554442 44 22 234445555555554442 2321   1244444444444442 331


Q ss_pred             hhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcc
Q 002350          433 SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS  512 (933)
Q Consensus       433 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~  512 (933)
                        +..+++|++|++++|.+++ +|..   .++|++|++++|.++ .+|. +..+++|++|++++|++++ +|..      
T Consensus       191 --~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~------  255 (454)
T 1jl5_A          191 --LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL------  255 (454)
T ss_dssp             --CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC------
T ss_pred             --ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc------
Confidence              2344444444444444443 1111   124444444444444 3332 4444444444444444442 2221      


Q ss_pred             ccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          513 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       513 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                                            .++|+.|++++|++++ +|..  +++|++|++++|++++. |.   -.++|++|++++
T Consensus       256 ----------------------~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~  306 (454)
T 1jl5_A          256 ----------------------PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASS  306 (454)
T ss_dssp             ----------------------CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCS
T ss_pred             ----------------------ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcc-cC---cCCcCCEEECcC
Confidence                                  1344444444444443 1211  24455555555555442 11   014566666666


Q ss_pred             CcCcccCchhhhcC-CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCC
Q 002350          593 NTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLN  671 (933)
Q Consensus       593 N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~  671 (933)
                      |++++ ++    .+ ++|++|++++|++++ +|..   +++|+.|++++|+++ .+|. .                    
T Consensus       307 N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-~--------------------  355 (454)
T 1jl5_A          307 NEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-L--------------------  355 (454)
T ss_dssp             SCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-C--------------------
T ss_pred             CcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-h--------------------
Confidence            66664 22    12 467777777777775 4443   467777777777776 3443 0                    


Q ss_pred             CCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC--CCC
Q 002350          672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG--EIP  749 (933)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g--~ip  749 (933)
                                                                                 +++|+.||+++|++++  .+|
T Consensus       356 -----------------------------------------------------------l~~L~~L~L~~N~l~~l~~ip  376 (454)
T 1jl5_A          356 -----------------------------------------------------------PQNLKQLHVEYNPLREFPDIP  376 (454)
T ss_dssp             -----------------------------------------------------------CTTCCEEECCSSCCSSCCCCC
T ss_pred             -----------------------------------------------------------hhhccEEECCCCCCCcCCCCh
Confidence                                                                       1246668888888877  666


Q ss_pred             hhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecc--cCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350          750 SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG--QIPPQLTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       750 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      ..++.        |+.|++.|.+|..   +++|++||+++|++++  .+|.+      ++.|.+.+|.+.+.+|.
T Consensus       377 ~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          377 ESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             TTCCE--------EECCC---------------------------------------------------------
T ss_pred             HHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence            65543        3456777777763   5778888888888887  66654      45567788888877663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.6e-38  Score=361.17  Aligned_cols=367  Identities=18%  Similarity=0.198  Sum_probs=241.0

Q ss_pred             CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEE
Q 002350          341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD  420 (933)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  420 (933)
                      ++|++|++++|.++++.+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            34555555555554443344455555555555555555444444334456666666666666555555566666666666


Q ss_pred             cCCCcCCCCcch-hhhcCCCCCCEEECcCCcCCCcCchh-hcccCcCCeEEccCccccccccccccCC--CCCCEEEccC
Q 002350          421 LSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSE-YMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISN  496 (933)
Q Consensus       421 Ls~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~  496 (933)
                      +++|.+++.++. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            666666543322 22445566666666666666555544 5556666666666666665555554443  4566666666


Q ss_pred             CcCCCCChhhH--------hhhccccceeecCCCcCCCCcchhccCC---CCCCEEEccCCcCccccCccccCCCCceEE
Q 002350          497 NMLSGHIPHWM--------GNFSSELEILSMSKNHLEGNVPVQLNNL---ERLRILDISENRLSGPIASSLNLSSVEHLS  565 (933)
Q Consensus       497 n~l~~~~p~~l--------~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~  565 (933)
                      |.+.+..+..+        ...+. |+.|++++|++++..|..+...   ++|+.|++++|...+.....          
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------  258 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----------  258 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC----------
T ss_pred             Ccccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch----------
Confidence            66553322211        12233 6666666666665555554333   56677777766654432211          


Q ss_pred             eecCcCcccCchhhcc--CCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcC
Q 002350          566 LQKNALNGLIPGELFR--SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF  643 (933)
Q Consensus       566 L~~n~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  643 (933)
                         +.+.+..+..+..  .++|++|++++|++++..|..+..+++|++|++++|++++..|..|.++++|+.|++++|.+
T Consensus       259 ---~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          259 ---TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             ---CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence               1122222222222  36889999999999988888899999999999999999988888899999999999999998


Q ss_pred             CCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccce
Q 002350          644 SGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRY  723 (933)
Q Consensus       644 ~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  723 (933)
                      ++..|..+.+                                                                      
T Consensus       336 ~~~~~~~~~~----------------------------------------------------------------------  345 (455)
T 3v47_A          336 GSIDSRMFEN----------------------------------------------------------------------  345 (455)
T ss_dssp             CEECGGGGTT----------------------------------------------------------------------
T ss_pred             CCcChhHhcC----------------------------------------------------------------------
Confidence            7665655433                                                                      


Q ss_pred             eeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCc
Q 002350          724 EIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP  798 (933)
Q Consensus       724 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~  798 (933)
                             +++|+.|||++|++++..|..++.+++|++|+|++|++++..+..|+++++|++|+|++|++++..|.
T Consensus       346 -------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          346 -------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             -------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             -------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence                   34678899999999988899999999999999999999988888889999999999999999988773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.1e-38  Score=358.13  Aligned_cols=390  Identities=24%  Similarity=0.289  Sum_probs=251.8

Q ss_pred             CCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCC-------------CCEEEcCCCCCcCcC
Q 002350          291 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPK-------------LEVLLLKNNSFSGIL  357 (933)
Q Consensus       291 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~-------------L~~L~L~~n~l~~~~  357 (933)
                      ..+|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..+. .+.+             +++|++++|.+++++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            45677888888888 68888888889999999998888888887654 4443             588999999888864


Q ss_pred             cCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcC
Q 002350          358 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG  437 (933)
Q Consensus       358 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  437 (933)
                      ..    .++|++|++++|.+++ +|..    +++|++|++++|.+++ +|..   .++|++|++++|++++ +|.  +..
T Consensus        88 ~~----~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~--~~~  151 (454)
T 1jl5_A           88 EL----PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE--LQN  151 (454)
T ss_dssp             SC----CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC--CTT
T ss_pred             CC----cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc--cCC
Confidence            42    3688999999999885 6642    5789999999998875 3321   2689999999999884 773  678


Q ss_pred             CCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhcccccee
Q 002350          438 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL  517 (933)
Q Consensus       438 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L  517 (933)
                      +++|++|++++|++++ +|..   .++|++|++++|++++ +| .+..+++|++|++++|++++ +|...    .+|++|
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L  220 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESI  220 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEE
T ss_pred             CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEE
Confidence            8899999999998886 3433   3589999999999886 55 58888999999999998874 45422    348999


Q ss_pred             ecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcc
Q 002350          518 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG  597 (933)
Q Consensus       518 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  597 (933)
                      ++++|.++ .+| .+..+++|+.|++++|++++. |.  .+++|++|++++|++++ +|..   .++|++|++++|++++
T Consensus       221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            99999888 566 488889999999999988763 32  24788888888888876 4443   3688888888888886


Q ss_pred             cCchhhhcCCCccEEEcCCCcCCCCCchhhhcC-CCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCcc
Q 002350          598 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL-QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  676 (933)
Q Consensus       598 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  676 (933)
                      . |..   .++|++|++++|++++ ++    .+ ++|+.|++++|++++ +|..                          
T Consensus       292 l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--------------------------  335 (454)
T 1jl5_A          292 L-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--------------------------  335 (454)
T ss_dssp             E-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--------------------------
T ss_pred             c-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--------------------------
Confidence            2 211   2578888888888875 22    23 478888888888875 4432                          


Q ss_pred             chhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhcc
Q 002350          677 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  756 (933)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  756 (933)
                                                                            +++|+.||+++|+++ .+|.   .++
T Consensus       336 ------------------------------------------------------~~~L~~L~L~~N~l~-~lp~---~l~  357 (454)
T 1jl5_A          336 ------------------------------------------------------PPRLERLIASFNHLA-EVPE---LPQ  357 (454)
T ss_dssp             ------------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred             ------------------------------------------------------CCcCCEEECCCCccc-cccc---hhh
Confidence                                                                  125677888888888 4666   467


Q ss_pred             ccCeeecccccccc--ccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc--cCCCC
Q 002350          757 AILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG--RTPDK  823 (933)
Q Consensus       757 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~~p~~  823 (933)
                      +|++|++++|++++  .+|.++++        |+.|.+.|.+|..   +++|++||+++|+++|  .+|..
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------------
T ss_pred             hccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence            88888888888887  67766543        3457777788764   4789999999999998  77743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.4e-38  Score=339.02  Aligned_cols=296  Identities=26%  Similarity=0.375  Sum_probs=219.3

Q ss_pred             CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcc--cceeEecCCC--CcEEEEecCCCCCCCCC
Q 002350           26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCH--WQRVKCNATT--GRVMQLSLKNTTRLNYP  101 (933)
Q Consensus        26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~--w~gv~c~~~~--~~V~~l~l~~~~~l~l~  101 (933)
                      +.|.++|++||++||+++.++      . .+++| ..+      ++||.  |.||+|+..+  ++|+++++++...   +
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~------~-~l~~W-~~~------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l---~   63 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNP------T-TLSSW-LPT------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL---P   63 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCC------G-GGTTC-CTT------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC---S
T ss_pred             CCCCHHHHHHHHHHHHhcCCc------c-cccCC-CCC------CCCCcCCCcceEeCCCCCCceEEEEECCCCCc---c
Confidence            369999999999999999543      3 68999 554      67998  9999998655  8999999988764   3


Q ss_pred             CCCcccccccccCCCCCCCEeeCCC-CCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCc
Q 002350          102 YDWFPLLNMSLFHPLEELQSLDLSV-NIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNR  180 (933)
Q Consensus       102 ~~~~~~~~~~~f~~l~~L~~LdLs~-n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  180 (933)
                      +..   .-+..|.++++|++|+|++ |.+.+.+|    ..++++++|++|++++|.+++.+|..+.++++|++|++++|.
T Consensus        64 ~~~---~~~~~l~~l~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A           64 KPY---PIPSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             SCE---ECCGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CCc---ccChhHhCCCCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence            210   1235788899999999995 88887777    678889999999999999988888889999999999999999


Q ss_pred             ccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCC-CCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCC
Q 002350          181 IEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLT-RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP  259 (933)
Q Consensus       181 i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  259 (933)
                      +++..| ..+..+++|++|++++|.+++.+|..+++++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|
T Consensus       137 l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          137 LSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             EESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             cCCcCC-hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence            988777 5788899999999999999888888898888 899999999999888888888887 9999999998876554


Q ss_pred             hhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhC
Q 002350          260 LSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRN  339 (933)
Q Consensus       260 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  339 (933)
                       ..+.++++|+.|++++|                         .+++.+|. +..+++|++|++++|++++.+|.++. .
T Consensus       215 -~~~~~l~~L~~L~L~~N-------------------------~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~  266 (313)
T 1ogq_A          215 -VLFGSDKNTQKIHLAKN-------------------------SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-Q  266 (313)
T ss_dssp             -GGCCTTSCCSEEECCSS-------------------------EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG-G
T ss_pred             -HHHhcCCCCCEEECCCC-------------------------ceeeecCc-ccccCCCCEEECcCCcccCcCChHHh-c
Confidence             45566666665555554                         44433333 44445555555555555555554443 4


Q ss_pred             CCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCc
Q 002350          340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN  376 (933)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  376 (933)
                      +++|++|++++|.+++..+.. ..+++|+.+++++|.
T Consensus       267 l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            555555555555555432221 445555555665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=344.57  Aligned_cols=346  Identities=18%  Similarity=0.175  Sum_probs=256.8

Q ss_pred             EEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCC
Q 002350          418 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN  497 (933)
Q Consensus       418 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  497 (933)
                      .++.+++.++ .+|..+   .+.++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4444444444 344432   235566666666666655666666666777777777666666666667777777777777


Q ss_pred             cCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCc
Q 002350          498 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP  576 (933)
Q Consensus       498 ~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p  576 (933)
                      ++++..+..+..++. |++|++++|++++..+..|..+++|+.|++++|++.+..+..+ .+++|++|++++|++++..+
T Consensus        91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            766433334455555 7777777777776667777778888888888888877777666 78888888888888887777


Q ss_pred             hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhc
Q 002350          577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS  656 (933)
Q Consensus       577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  656 (933)
                      ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.+|.......+|+.|++++|++++..+..+.+   
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---  246 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH---  246 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence            77888888888888888888777778888888888888888888777777777778999999998887422223322   


Q ss_pred             cccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccE
Q 002350          657 WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG  736 (933)
Q Consensus       657 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  736 (933)
                                                                                                +++|+.
T Consensus       247 --------------------------------------------------------------------------l~~L~~  252 (477)
T 2id5_A          247 --------------------------------------------------------------------------LVYLRF  252 (477)
T ss_dssp             --------------------------------------------------------------------------CTTCCE
T ss_pred             --------------------------------------------------------------------------ccccCe
Confidence                                                                                      346788


Q ss_pred             EEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcC
Q 002350          737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL  816 (933)
Q Consensus       737 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  816 (933)
                      |||++|.+++..+..+..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99999999888888888999999999999999998899999999999999999999987777888999999999999999


Q ss_pred             cccCCCCCcCCccCcccccCCCCCCCccc
Q 002350          817 SGRTPDKGQFATFDESSYRGNPSLCAWLI  845 (933)
Q Consensus       817 ~g~~p~~~~~~~~~~~~~~gN~~lc~~~l  845 (933)
                      .+.++....+.......+.++...|..|.
T Consensus       333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          333 ACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             ECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             cCccchHhHHhhhhccccCccCceeCCch
Confidence            88776432223333455777888887653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3e-34  Score=330.28  Aligned_cols=324  Identities=26%  Similarity=0.349  Sum_probs=198.9

Q ss_pred             CCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeE
Q 002350          389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL  468 (933)
Q Consensus       389 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  468 (933)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++.  +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence            4444444444444443222  4444455555555554442 222  3444555555555555444322  4455555555


Q ss_pred             EccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcC
Q 002350          469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL  548 (933)
Q Consensus       469 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  548 (933)
                      ++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+..++. |+.|++++|.+++.  ..+..+++|+.|++++|++
T Consensus       140 ~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          140 ELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             EEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence            555555543 22 24555555555554 233322 2 1444444 66666666665532  2355666666666666666


Q ss_pred             ccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350          549 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  628 (933)
Q Consensus       549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  628 (933)
                      .+..+ ...+++|++|++++|.+.+.  ..+..+++|++|++++|++++..+  +..+++|++|++++|++++..+  +.
T Consensus       212 ~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  284 (466)
T 1o6v_A          212 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA  284 (466)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred             ccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence            65544 22566677777777766643  356677778888888887775544  6777788888888888776443  77


Q ss_pred             cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhh
Q 002350          629 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA  708 (933)
Q Consensus       629 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  708 (933)
                      .+++|+.|++++|++++..|  +.                                                        
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~--~~--------------------------------------------------------  306 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP--IS--------------------------------------------------------  306 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG--GG--------------------------------------------------------
T ss_pred             CCCccCeEEcCCCcccCchh--hc--------------------------------------------------------
Confidence            77888888888887765322  11                                                        


Q ss_pred             chhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECc
Q 002350          709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS  788 (933)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  788 (933)
                                           .+++|+.|+|++|++++..|  ++.+++|+.|++++|++++.  ..++++++|+.|+++
T Consensus       307 ---------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          307 ---------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG  361 (466)
T ss_dssp             ---------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ---------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence                                 13467778888888876655  67788888888888888865  367888888888888


Q ss_pred             CCeecccCCcCCcCCCCCCeEEccCCcCccc
Q 002350          789 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGR  819 (933)
Q Consensus       789 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  819 (933)
                      +|++++.+|  +..+++|+.|++++|++++.
T Consensus       362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          362 HNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            888887776  77888888888888888773

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.3e-34  Score=326.59  Aligned_cols=348  Identities=25%  Similarity=0.339  Sum_probs=242.7

Q ss_pred             CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEE
Q 002350          341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD  420 (933)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  420 (933)
                      ++++.|++.++.+..+.  .+..+++|++|++++|.+++ +|. + ..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            44555555555554442  24455556666666665552 332 2 246666666666666664433  66666666666


Q ss_pred             cCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC
Q 002350          421 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS  500 (933)
Q Consensus       421 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  500 (933)
                      +++|.+.+ ++.  +..+++|++|++++|.+.+.  ..+..+++|++|+++ |.+.+..  .+..+++|++|++++|.++
T Consensus       119 L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          119 LFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            66666653 332  45666666666666666653  235666777777775 3443222  2667777777777777776


Q ss_pred             CCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhc
Q 002350          501 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF  580 (933)
Q Consensus       501 ~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  580 (933)
                      + ++ .+..++. |+.|++++|.+++..|  +..+++|+.|++++|++.+. +....+++|++|++++|.+.+..+  +.
T Consensus       191 ~-~~-~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          191 D-IS-VLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             C-CG-GGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             C-Ch-hhccCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hh
Confidence            3 33 3555555 7888888887776554  66677888888888887653 333377888888888888876644  77


Q ss_pred             cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccC
Q 002350          581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG  660 (933)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~  660 (933)
                      .+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++..|  +..       
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-------  329 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS-------  329 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG-------
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc-------
Confidence            88899999999999886544  7888999999999999987544  7889999999999999886544  221       


Q ss_pred             CCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcC
Q 002350          661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS  740 (933)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  740 (933)
                                                                                            +++|+.|+++
T Consensus       330 ----------------------------------------------------------------------l~~L~~L~l~  339 (466)
T 1o6v_A          330 ----------------------------------------------------------------------LTKLQRLFFY  339 (466)
T ss_dssp             ----------------------------------------------------------------------CTTCCEEECC
T ss_pred             ----------------------------------------------------------------------CccCCEeECC
Confidence                                                                                  3467889999


Q ss_pred             CCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcC
Q 002350          741 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ  799 (933)
Q Consensus       741 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~  799 (933)
                      +|++++.  ..+..+++|+.|++++|++++.+|  +.++++|+.|++++|++++ +|..
T Consensus       340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN  393 (466)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred             CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence            9999864  468899999999999999998887  8999999999999999996 3443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.4e-35  Score=335.15  Aligned_cols=354  Identities=19%  Similarity=0.169  Sum_probs=275.2

Q ss_pred             CCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCE
Q 002350          339 NNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSL  418 (933)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  418 (933)
                      .+++|++|++++|.+++++  .+..+++|++|++++|++++ +|  + ..+++|++|++++|.+++. +  ++.+++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~-~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--L-SQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--c-ccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            6788999999999888773  57788888899999888885 44  3 3478888888888888864 3  778888888


Q ss_pred             EEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCc
Q 002350          419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM  498 (933)
Q Consensus       419 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  498 (933)
                      |++++|++++ ++   +..+++|++|++++|++++.   .+..+++|++|++++|...+.+  .+..+++|++|++++|+
T Consensus       111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            8888888874 44   56788888888888888874   2667888888888888655454  46778888888888888


Q ss_pred             CCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchh
Q 002350          499 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGE  578 (933)
Q Consensus       499 l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  578 (933)
                      +++ +|  +..++. |+.|++++|++++.   .+..+++|+.|++++|++++ +| ...+++|++|++++|++++..   
T Consensus       182 l~~-l~--l~~l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          182 ITE-LD--VSQNKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCC-CC--CTTCTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC---
T ss_pred             cce-ec--cccCCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC---
Confidence            875 44  556655 88888888888864   37778888888888888877 34 337788888888888887753   


Q ss_pred             hccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccc
Q 002350          579 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR  658 (933)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~  658 (933)
                      +..+++|+.|++++|              +|+.|++++|++.+.+|  +..+++|+.|++++|++.|.+|.....++.+.
T Consensus       250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            345677888887765              46678889998888877  56789999999999998888875433222110


Q ss_pred             cCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEE
Q 002350          659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD  738 (933)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  738 (933)
                                                                                           ....++|+.|+
T Consensus       314 ---------------------------------------------------------------------l~~~~~L~~L~  324 (457)
T 3bz5_A          314 ---------------------------------------------------------------------LSQNPKLVYLY  324 (457)
T ss_dssp             ---------------------------------------------------------------------CTTCTTCCEEE
T ss_pred             ---------------------------------------------------------------------hhhcccCCEEE
Confidence                                                                                 02245788999


Q ss_pred             cCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350          739 LSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  818 (933)
Q Consensus       739 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  818 (933)
                      +++|+++| +|  ++.+++|+.|++++|++++        ++.|+.|++++|+++|.     ..+..|..+++++|+++|
T Consensus       325 L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g  388 (457)
T 3bz5_A          325 LNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTI  388 (457)
T ss_dssp             CTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEE
T ss_pred             CCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEE
Confidence            99999998 44  8999999999999999996        24677788999999987     345678889999999999


Q ss_pred             cCCCC
Q 002350          819 RTPDK  823 (933)
Q Consensus       819 ~~p~~  823 (933)
                      .+|..
T Consensus       389 ~ip~~  393 (457)
T 3bz5_A          389 AVSPD  393 (457)
T ss_dssp             ECCTT
T ss_pred             EcChh
Confidence            99964

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-34  Score=330.97  Aligned_cols=357  Identities=19%  Similarity=0.187  Sum_probs=207.0

Q ss_pred             CCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccE
Q 002350          290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH  369 (933)
Q Consensus       290 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  369 (933)
                      .+++|++|++++|.+++. | .+..+++|++|++++|++++ +|   +..+++|++|++++|.++++   ++..+++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCCcCCE
Confidence            345555555555555542 3 35555555555555555553 23   23455555555555555553   2445555555


Q ss_pred             EEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCC
Q 002350          370 LDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN  449 (933)
Q Consensus       370 L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  449 (933)
                      |++++|++++ +|  + ..+++|++|++++|.+++. +  ++.+++|++|++++|...+.++   +..+++|++|++++|
T Consensus       111 L~L~~N~l~~-l~--~-~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          111 LNCDTNKLTK-LD--V-SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EECCSSCCSC-CC--C-TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred             EECCCCcCCe-ec--C-CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence            5555555553 33  2 2355555555555555542 1  4455555555555554333332   234555555555555


Q ss_pred             cCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc
Q 002350          450 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP  529 (933)
Q Consensus       450 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~  529 (933)
                      ++++. +  +..+++|+.|++++|++++.   .+..+++|++|++++|++++ +|  +..++. |+.|++++|++++.. 
T Consensus       181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~L~l~~N~l~~~~-  249 (457)
T 3bz5_A          181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ-LTYFDCSVNPLTELD-  249 (457)
T ss_dssp             CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCCSCCC-
T ss_pred             cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCC-CCEEEeeCCcCCCcC-
Confidence            55542 1  44455555555555555532   24445555555555555553 33  334433 555555555555432 


Q ss_pred             hhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCc
Q 002350          530 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL  609 (933)
Q Consensus       530 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  609 (933)
                        +..+++|+.|++++|             +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.   ..++|
T Consensus       250 --~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L  309 (457)
T 3bz5_A          250 --VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI  309 (457)
T ss_dssp             --CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred             --HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence              233444555554443             34556666666655555  34566777777777766666653   23445


Q ss_pred             cEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCC
Q 002350          610 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS  689 (933)
Q Consensus       610 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (933)
                      +.|++++|             ++|+.|++++|+++|. |  +++                                    
T Consensus       310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~------------------------------------  337 (457)
T 3bz5_A          310 TELDLSQN-------------PKLVYLYLNNTELTEL-D--VSH------------------------------------  337 (457)
T ss_dssp             SCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTT------------------------------------
T ss_pred             eEechhhc-------------ccCCEEECCCCccccc-c--ccc------------------------------------
Confidence            55544444             6899999999999873 2  222                                    


Q ss_pred             CccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccc
Q 002350          690 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS  769 (933)
Q Consensus       690 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  769 (933)
                                                               +++|+.||+++|+++|        ++.|..|++++|.++
T Consensus       338 -----------------------------------------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~  368 (457)
T 3bz5_A          338 -----------------------------------------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE  368 (457)
T ss_dssp             -----------------------------------------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred             -----------------------------------------CCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence                                                     3468889999999996        246777899999999


Q ss_pred             cccchhccCCCCCCEEECcCCeecccCCcCCcC
Q 002350          770 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTA  802 (933)
Q Consensus       770 ~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  802 (933)
                      |.     +++..|+.+|+++|+++|.||..+..
T Consensus       369 g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          369 AE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            86     35677899999999999999987654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-34  Score=314.11  Aligned_cols=257  Identities=34%  Similarity=0.549  Sum_probs=233.8

Q ss_pred             ccceeecCCCcCCC--CcchhccCCCCCCEEEccC-CcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEE
Q 002350          513 ELEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTL  588 (933)
Q Consensus       513 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  588 (933)
                      +++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..+ .+++|++|++++|.+++.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            37888888888887  7888888888899999984 88888888777 88999999999999988899999999999999


Q ss_pred             eCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcCCCCCCchhhhhhccccCCCCccCC
Q 002350          589 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG  667 (933)
Q Consensus       589 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~  667 (933)
                      ++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|+++|.+|..+..+             
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-------------  197 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------  197 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-------------
Confidence            9999999999999999999999999999999999999999998 99999999999998888776542             


Q ss_pred             CCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCC
Q 002350          668 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE  747 (933)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~  747 (933)
                                                                                       .|+.||+++|++++.
T Consensus       198 -----------------------------------------------------------------~L~~L~Ls~N~l~~~  212 (313)
T 1ogq_A          198 -----------------------------------------------------------------NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             -----------------------------------------------------------------CCSEEECCSSEEEEC
T ss_pred             -----------------------------------------------------------------cccEEECcCCcccCc
Confidence                                                                             267799999999999


Q ss_pred             CChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCC
Q 002350          748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA  827 (933)
Q Consensus       748 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~  827 (933)
                      +|..++.+++|+.|+|++|++++.+|. +..+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~  291 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ  291 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGG
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcccc
Confidence            999999999999999999999988777 8999999999999999999999999999999999999999999999998899


Q ss_pred             ccCcccccCCCCCCCccccCCC
Q 002350          828 TFDESSYRGNPSLCAWLIQQKY  849 (933)
Q Consensus       828 ~~~~~~~~gN~~lc~~~l~~~~  849 (933)
                      .+....+.||+++||.|+. .|
T Consensus       292 ~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          292 RFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccChHHhcCCCCccCCCCC-CC
Confidence            9999999999999998764 35

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.8e-34  Score=328.40  Aligned_cols=347  Identities=19%  Similarity=0.167  Sum_probs=212.0

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350          368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  447 (933)
Q Consensus       368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  447 (933)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|..+++|++|+|++|.+.                    
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--------------------   69 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--------------------   69 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--------------------
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--------------------
Confidence            35556666555 555543   345566666666655544555555555555555555554                    


Q ss_pred             CCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCC
Q 002350          448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN  527 (933)
Q Consensus       448 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~  527 (933)
                           +..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++.+..|..+..++. |+.|++++|.+++.
T Consensus        70 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~  143 (477)
T 2id5_A           70 -----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYI  143 (477)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEE
T ss_pred             -----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCcccee
Confidence                 433444444444444444444444333333444455555555555554444444444444 55555555555555


Q ss_pred             cchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcC
Q 002350          528 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH  606 (933)
Q Consensus       528 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  606 (933)
                      .+..|.++++|+.|++++|++++..+..+ .+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|......
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence            55556666666666666666655544444 56666666666666666666666777777777777777666666666555


Q ss_pred             CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCC
Q 002350          607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN  686 (933)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (933)
                      .+|++|++++|++++..+..+..+++|+.|++++|++++..+..+.+                                 
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------  270 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE---------------------------------  270 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence            67777777777777555566777788888888888776444433322                                 


Q ss_pred             CCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeecccc
Q 002350          687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN  766 (933)
Q Consensus       687 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  766 (933)
                                                                  +++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus       271 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          271 --------------------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             --------------------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence                                                        345677888888888777888888888888888888


Q ss_pred             ccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350          767 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       767 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      ++++..+..|.++++|++|+|++|.+...-+.. .-......+++..+...+..|.
T Consensus       307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             cCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence            888877778888888888888888887542211 1112233345556666665553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.5e-33  Score=310.36  Aligned_cols=333  Identities=21%  Similarity=0.234  Sum_probs=242.6

Q ss_pred             CCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEE
Q 002350          413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL  492 (933)
Q Consensus       413 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  492 (933)
                      +++++.|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            466777777777765 5666666677777777777777776666677777777777777777776666677777778888


Q ss_pred             EccCCcCCCCChhh-HhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcC
Q 002350          493 DISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL  571 (933)
Q Consensus       493 ~Ls~n~l~~~~p~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l  571 (933)
                      ++++|+++ .+|.. +..++. |++|++++|++++..+..+..+++|+.|++++|++++..  ...+++|+.|++++|.+
T Consensus       123 ~L~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLS-SLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred             ECCCCccC-cCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence            88888777 44443 355555 888888888877777777778888888888888776542  22567788888888877


Q ss_pred             cccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350          572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF  651 (933)
Q Consensus       572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~  651 (933)
                      .+.     ...++|+.|++++|.+... |...  .++|++|++++|++++.  ..+..+++|+.|++++|.+++..|..+
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            643     3345788888888888743 4332  46788888888888753  567888888888888888876656554


Q ss_pred             hhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCC
Q 002350          652 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV  731 (933)
Q Consensus       652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  731 (933)
                      ..                                                                             +
T Consensus       269 ~~-----------------------------------------------------------------------------l  271 (390)
T 3o6n_A          269 VK-----------------------------------------------------------------------------M  271 (390)
T ss_dssp             TT-----------------------------------------------------------------------------C
T ss_pred             cc-----------------------------------------------------------------------------c
Confidence            33                                                                             2


Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  811 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  811 (933)
                      ++|+.|+|++|++++ +|..++.+++|++|+|++|+++ .+|..++.+++|++|+|++|+++.. |  +..++.|+.|++
T Consensus       272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence            467778888888874 5666777888999999999988 5677788889999999999998854 3  677888999999


Q ss_pred             cCCcCcccCCCCCcCCccCcccccCCCCCCCc
Q 002350          812 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAW  843 (933)
Q Consensus       812 s~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~  843 (933)
                      ++|++++.... ..+..+....+.+++..|.+
T Consensus       347 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          347 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             CCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            99999875432 23444555556677766754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-32  Score=326.78  Aligned_cols=335  Identities=20%  Similarity=0.217  Sum_probs=249.3

Q ss_pred             CCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEE
Q 002350          413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL  492 (933)
Q Consensus       413 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  492 (933)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456666777776665 5666666677777777777777777666677777777777777777777666667777777777


Q ss_pred             EccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCc
Q 002350          493 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN  572 (933)
Q Consensus       493 ~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~  572 (933)
                      ++++|.+++..+..+..++. |++|++++|.+++..|..|..+++|+.|++++|++++...  ..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccc
Confidence            77777777433333455555 7778888887777777777778888888888887776432  24677888888888776


Q ss_pred             ccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhh
Q 002350          573 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA  652 (933)
Q Consensus       573 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~  652 (933)
                      +.     ...++|+.|++++|.+... |..+  .++|+.|+|++|.+++  +..+..+++|+.|++++|.+++.+|..++
T Consensus       206 ~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 TL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             EE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            43     3445788888888888743 3322  2578888888888886  36788888888999988888877676554


Q ss_pred             hhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCC
Q 002350          653 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN  732 (933)
Q Consensus       653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  732 (933)
                      .                                                                             ++
T Consensus       276 ~-----------------------------------------------------------------------------l~  278 (597)
T 3oja_B          276 K-----------------------------------------------------------------------------MQ  278 (597)
T ss_dssp             T-----------------------------------------------------------------------------CS
T ss_pred             C-----------------------------------------------------------------------------cc
Confidence            3                                                                             23


Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      +|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++. |  +..++.|++|+++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence            67778999998885 5777778889999999999998 5777888999999999999999855 3  6778899999999


Q ss_pred             CCcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350          813 YNNLSGRTPDKGQFATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       813 ~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~  844 (933)
                      +|+++|.++ ...+..+....+.+++..|+.+
T Consensus       354 ~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          354 HNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence            999998753 2345566667788999999753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=4.7e-31  Score=291.69  Aligned_cols=304  Identities=23%  Similarity=0.344  Sum_probs=188.6

Q ss_pred             CCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeE
Q 002350          389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL  468 (933)
Q Consensus       389 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  468 (933)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  +.+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            5666666666666553 22 2555566666666666555 2332  34555555555555555432  234444455555


Q ss_pred             EccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcC
Q 002350          469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL  548 (933)
Q Consensus       469 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  548 (933)
                      ++++|.+++. +. +..+++                         |+.|++++|......+ .+..+++|+.|++++|++
T Consensus       116 ~l~~n~i~~~-~~-~~~l~~-------------------------L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          116 YLNEDNISDI-SP-LANLTK-------------------------MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             ECTTSCCCCC-GG-GTTCTT-------------------------CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             ECcCCcccCc-hh-hccCCc-------------------------eeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence            5555544422 11 344444                         5555555553332222 255556666666666655


Q ss_pred             ccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350          549 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  628 (933)
Q Consensus       549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  628 (933)
                      .+..+ ...+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +.
T Consensus       168 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          168 KDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             CCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            54333 2256666666666666654322  6677777777777777775433  6777778888888887775433  77


Q ss_pred             cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhh
Q 002350          629 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA  708 (933)
Q Consensus       629 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  708 (933)
                      .+++|+.|++++|.+++. + .+                                                         
T Consensus       241 ~l~~L~~L~l~~n~l~~~-~-~~---------------------------------------------------------  261 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI-N-AV---------------------------------------------------------  261 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC-G-GG---------------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCCC-h-hH---------------------------------------------------------
Confidence            778888888888877642 1 11                                                         


Q ss_pred             chhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECc
Q 002350          709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS  788 (933)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  788 (933)
                                          ..+++|+.|++++|++++.  +.+..+++|+.|++++|.+++..|..|+++++|++|+++
T Consensus       262 --------------------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          262 --------------------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             --------------------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             --------------------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence                                1234677788888888753  357788888888888888888888888888888888888


Q ss_pred             CCeecccCCcCCcCCCCCCeEEccCCcCc
Q 002350          789 YNKLTGQIPPQLTALNFLSIFNVSYNNLS  817 (933)
Q Consensus       789 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  817 (933)
                      +|++++..|  +..++.|++|++++|+++
T Consensus       320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          320 QNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCccccccC--hhhhhccceeehhhhccc
Confidence            888887665  778888888888888774

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=1.7e-31  Score=300.09  Aligned_cols=312  Identities=22%  Similarity=0.213  Sum_probs=245.0

Q ss_pred             CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350          115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK  194 (933)
Q Consensus       115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~  194 (933)
                      .++++++|++++|.+....+    ..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+.+++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  117 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP  117 (390)
T ss_dssp             GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred             ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCC
Confidence            46788888888887765333    456778888999999888887777788888899999999888887665 5688888


Q ss_pred             CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEec
Q 002350          195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL  274 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  274 (933)
                      +|++|++++|.++...+..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+++. +   +..+++|+.+++
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l  193 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANV  193 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEEC
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeec
Confidence            899999998888875555578888899999998888887778888888899999988888753 2   567788888888


Q ss_pred             ccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCc
Q 002350          275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS  354 (933)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  354 (933)
                      +++....      +....+|++|++++|.+... |.  ...++|+.|++++|.+++. + + +..+++|++|++++|.++
T Consensus       194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          194 SYNLLST------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A-W-LLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             CSSCCSE------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G-G-GGGCTTCSEEECCSSCCC
T ss_pred             ccccccc------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H-H-HcCCCCccEEECCCCcCC
Confidence            8775432      22345788899999888754 22  2246889999999988753 3 3 347889999999999988


Q ss_pred             CcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhh
Q 002350          355 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV  434 (933)
Q Consensus       355 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  434 (933)
                      +..+..+..+++|++|++++|+++ .+|.... .+++|++|++++|.+. .+|..+..+++|+.|++++|+++ .++   
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~---  334 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK---  334 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC---
T ss_pred             CcChhHccccccCCEEECCCCcCc-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC---
Confidence            876667788889999999999887 4555443 4789999999999888 56777788889999999999987 344   


Q ss_pred             hcCCCCCCEEECcCCcCCCc
Q 002350          435 VTGCFSLELLDLSNNNFEGQ  454 (933)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~~  454 (933)
                      +..+++|++|++++|.+...
T Consensus       335 ~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          335 LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCTTCCCSEEECCSSCEEHH
T ss_pred             chhhccCCEEEcCCCCccch
Confidence            45778899999999988754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.3e-31  Score=315.66  Aligned_cols=313  Identities=22%  Similarity=0.211  Sum_probs=234.5

Q ss_pred             CCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350          115 PLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK  194 (933)
Q Consensus       115 ~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~  194 (933)
                      .+.+++.|++++|.+....+    ..+.++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+ ..++.++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  123 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP  123 (597)
T ss_dssp             GGCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred             cCCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCC
Confidence            35677888888877765433    456777888888888888887777788888888888888888877655 5677888


Q ss_pred             CCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEec
Q 002350          195 NLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL  274 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L  274 (933)
                      +|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++. +   +..+++|+.|++
T Consensus       124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l  199 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANV  199 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhc
Confidence            888888888888876556677888888888888888877777788888888888888887753 2   556777888888


Q ss_pred             ccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCc
Q 002350          275 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS  354 (933)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~  354 (933)
                      ++|....      +.....|+.|++++|.+....+..   .++|+.|++++|.+++.  .++ ..+++|+.|++++|.++
T Consensus       200 ~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l-~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          200 SYNLLST------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL-LNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             CSSCCSE------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCC
T ss_pred             ccCcccc------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh-ccCCCCCEEECCCCccC
Confidence            7765432      223456888888888877433222   25788888888888753  333 47888888888888888


Q ss_pred             CcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhh
Q 002350          355 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV  434 (933)
Q Consensus       355 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  434 (933)
                      +..+..+..+++|++|++++|.+++ +|.... .+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ ++   
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~---  340 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---  340 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCE-EECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCC-CCcccc-cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC---
Confidence            8766667788888888888888874 555443 4788888888888888 577777888888999999888873 33   


Q ss_pred             hcCCCCCCEEECcCCcCCCcC
Q 002350          435 VTGCFSLELLDLSNNNFEGQF  455 (933)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~~~  455 (933)
                      +..+++|+.|++++|.+.+..
T Consensus       341 ~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          341 LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCTTCCCSEEECCSSCEEHHH
T ss_pred             hhhcCCCCEEEeeCCCCCChh
Confidence            456788999999999887543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.5e-30  Score=284.69  Aligned_cols=307  Identities=22%  Similarity=0.282  Sum_probs=228.1

Q ss_pred             hhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCC
Q 002350          312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQK  391 (933)
Q Consensus       312 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~  391 (933)
                      +..+++|++|++++|.+. .+|.  +..+++|++|++++|.++++..  +..+++|++|++++|.++ .++ .+ ..+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~-~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-AL-QNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GG-TTCTT
T ss_pred             chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HH-cCCCc
Confidence            345566777777777665 3443  2356777777777777766533  666777777777777776 343 23 34777


Q ss_pred             ccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEcc
Q 002350          392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE  471 (933)
Q Consensus       392 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  471 (933)
                      |++|++++|.+.+..+  +..+++|+.|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            7778877777764332  67777888888888765544443  5677788888888887776544  6778888888888


Q ss_pred             CccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc
Q 002350          472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP  551 (933)
Q Consensus       472 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  551 (933)
                      +|.+.+..+  +..+++|+.|++++|.+.+..+  +..++. |+.|++++|++++..+  +..+++|+.|++++|++++.
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence            888874333  6778888888888888875433  556655 8888888888885444  78888999999999988764


Q ss_pred             cCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC
Q 002350          552 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ  631 (933)
Q Consensus       552 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  631 (933)
                       +....+++|++|++++|++++.  ..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|  +..++
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence             4334788999999999988865  468889999999999999998888999999999999999999997666  88899


Q ss_pred             CCCEEEccCCcCC
Q 002350          632 KLAMMDLSRNKFS  644 (933)
Q Consensus       632 ~L~~L~Ls~N~l~  644 (933)
                      +|+.|++++|+++
T Consensus       334 ~L~~L~l~~N~i~  346 (347)
T 4fmz_A          334 KMDSADFANQVIK  346 (347)
T ss_dssp             TCSEESSSCC---
T ss_pred             ccceeehhhhccc
Confidence            9999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.4e-34  Score=327.42  Aligned_cols=279  Identities=20%  Similarity=0.227  Sum_probs=169.0

Q ss_pred             CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC----CccccccCCCCCCEEEcCCCcCCCCcchhhhcCCC-
Q 002350          365 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-  439 (933)
Q Consensus       365 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-  439 (933)
                      +.|++|++++|+++......++..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4567777777777644444444567888888888888764    24556677788888888888876544445555555 


Q ss_pred             ---CCCEEECcCCcCCC----cCchhhcccCcCCeEEccCccccccccccc-----cCCCCCCEEEccCCcCCCCC----
Q 002350          440 ---SLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGL-----LSSTSLQVLDISNNMLSGHI----  503 (933)
Q Consensus       440 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~----  503 (933)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888887774    346666777777777777777764433322     22456777777777776533    


Q ss_pred             hhhHhhhccccceeecCCCcCCCCcchhcc-----CCCCCCEEEccCCcCccc----cCccc-cCCCCceEEeecCcCcc
Q 002350          504 PHWMGNFSSELEILSMSKNHLEGNVPVQLN-----NLERLRILDISENRLSGP----IASSL-NLSSVEHLSLQKNALNG  573 (933)
Q Consensus       504 p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~-~l~~L~~L~L~~n~l~~  573 (933)
                      +..+..++. |++|++++|.+++..+..+.     ..++|+.|++++|++++.    ++..+ .+++|++|++++|.+.+
T Consensus       163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            333444444 77777777776544333332     244677777777766543    23333 45666666666666554


Q ss_pred             cC-----chhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhhhcC-----CCCCEEEcc
Q 002350          574 LI-----PGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL-----QKLAMMDLS  639 (933)
Q Consensus       574 ~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls  639 (933)
                      ..     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|++++..+..+...     ++|+.|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            32     11222356666666666666543    45555556666666666666654333333322     466666666


Q ss_pred             CCcCC
Q 002350          640 RNKFS  644 (933)
Q Consensus       640 ~N~l~  644 (933)
                      +|.++
T Consensus       322 ~n~l~  326 (461)
T 1z7x_W          322 SCSFT  326 (461)
T ss_dssp             TSCCB
T ss_pred             CCCCc
Confidence            66655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.4e-29  Score=277.85  Aligned_cols=287  Identities=20%  Similarity=0.262  Sum_probs=168.7

Q ss_pred             CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350          415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  494 (933)
Q Consensus       415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  494 (933)
                      +++.++++++.+. .+|..+   .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666665 555543   246777777777777666667777777777777777777666777777777888888


Q ss_pred             cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc--ccCccc-cCCCCceEEeecCcC
Q 002350          495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG--PIASSL-NLSSVEHLSLQKNAL  571 (933)
Q Consensus       495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~-~l~~L~~L~L~~n~l  571 (933)
                      ++|+++ .+|..+.  + +|++|++++|++++..+..+.++++|+.|++++|++..  ..+..+ .+ +|++|++++|++
T Consensus       110 ~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            877776 5555443  2 37777777777776666667777777777777777642  333333 22 555555555555


Q ss_pred             cccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchh
Q 002350          572 NGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF  651 (933)
Q Consensus       572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~  651 (933)
                      ++ +|.                        .+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+
T Consensus       185 ~~-l~~------------------------~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          185 TG-IPK------------------------DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL  237 (332)
T ss_dssp             SS-CCS------------------------SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred             Cc-cCc------------------------ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence            43 222                        221  344444455555444444445555555555555555544333322


Q ss_pred             hhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCC
Q 002350          652 ANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNV  731 (933)
Q Consensus       652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  731 (933)
                      ..                                                                             +
T Consensus       238 ~~-----------------------------------------------------------------------------l  240 (332)
T 2ft3_A          238 SF-----------------------------------------------------------------------------L  240 (332)
T ss_dssp             GG-----------------------------------------------------------------------------C
T ss_pred             hC-----------------------------------------------------------------------------C
Confidence            21                                                                             1


Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCC------CCCCEEECcCCeec--ccCCcCCcCC
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL------KMIESLDISYNKLT--GQIPPQLTAL  803 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--~~ip~~l~~l  803 (933)
                      ++|+.|||++|+++ .+|..++.+++|+.|++++|++++..+..|...      .+|+.|++++|.+.  +..|..+..+
T Consensus       241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence            23444555555555 455555566666666666666665555555442      45666666666665  4555666666


Q ss_pred             CCCCeEEccCCc
Q 002350          804 NFLSIFNVSYNN  815 (933)
Q Consensus       804 ~~L~~L~ls~N~  815 (933)
                      +.|+.+++++|+
T Consensus       320 ~~L~~l~l~~n~  331 (332)
T 2ft3_A          320 TDRLAIQFGNYK  331 (332)
T ss_dssp             CCSTTEEC----
T ss_pred             chhhhhhccccc
Confidence            666666666663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.1e-29  Score=273.82  Aligned_cols=270  Identities=23%  Similarity=0.303  Sum_probs=133.2

Q ss_pred             CCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeec
Q 002350          440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM  519 (933)
Q Consensus       440 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L  519 (933)
                      .+++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+.   ++|++|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEEC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEEC
Confidence            4455555555555444444555555555555555555544555555556666666666554 3443322   22666666


Q ss_pred             CCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccC
Q 002350          520 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI  599 (933)
Q Consensus       520 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  599 (933)
                      ++|++++..+..+.++++|+.|++++|++...                     +..+..+..+++|++|++++|+++. +
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~-l  186 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIENGAFQGMKKLSYIRIADTNITT-I  186 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcChhhccCCCCcCEEECCCCcccc-C
Confidence            66666655555566666666666666655320                     1222333333444444444444431 2


Q ss_pred             chhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchh
Q 002350          600 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEI  679 (933)
Q Consensus       600 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  679 (933)
                      |..+.  ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..                          
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------  238 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------------------------  238 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--------------------------
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--------------------------
Confidence            22221  34444444444444444444444444555555544444332222211                          


Q ss_pred             hcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccC
Q 002350          680 EFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL  759 (933)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  759 (933)
                                                                         +++|+.|+|++|+++ .+|..+..+++|+
T Consensus       239 ---------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~  266 (330)
T 1xku_A          239 ---------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQ  266 (330)
T ss_dssp             ---------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             ---------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence                                                               123444555555554 4555555555555


Q ss_pred             eeeccccccccccchhccC------CCCCCEEECcCCeecc--cCCcCCcCCCCCCeEEccCCc
Q 002350          760 ALNLSNNSLSGSIPESFSN------LKMIESLDISYNKLTG--QIPPQLTALNFLSIFNVSYNN  815 (933)
Q Consensus       760 ~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~  815 (933)
                      +|++++|++++..+..|..      ...|+.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            5555555555544444432      2556666666666642  445556666666666666663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.8e-32  Score=311.59  Aligned_cols=344  Identities=19%  Similarity=0.104  Sum_probs=243.2

Q ss_pred             CchhhhCCCCCCEEEccCCCCcccchhHHHhCCC----CCCEEEcCCCCCcCcC----cCCcccCCCccEEEccCCcCCC
Q 002350          308 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNP----KLEVLLLKNNSFSGIL----QLPKAKHDFLHHLDISCNNFRG  379 (933)
Q Consensus       308 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~  379 (933)
                      ++..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.++...    ...+..+++|++|++++|.+++
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            3456667777888888887777555555555555    5888888888777432    2335577788888888888765


Q ss_pred             CCChhhhhc----CCCccEEEccCCCCCCCc----cccccCCCCCCEEEcCCCcCCCCcchhhhc----CCCCCCEEECc
Q 002350          380 KLPHNMGVI----LQKLMYMDISKNCFEGNI----PYSAGEMKELSLLDLSRNYFSGGLSQSVVT----GCFSLELLDLS  447 (933)
Q Consensus       380 ~~p~~~~~~----l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~l~~L~~L~Ls  447 (933)
                      ..+..+...    .++|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+..    ..++|++|+++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence            444444332    356888888888887633    555667788899999988876433332222    35689999999


Q ss_pred             CCcCCCc----CchhhcccCcCCeEEccCccccccc-----cccccCCCCCCEEEccCCcCCCC----ChhhHhhhcccc
Q 002350          448 NNNFEGQ----FFSEYMNLTRLRHLYFENNNFSGKI-----KDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSEL  514 (933)
Q Consensus       448 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~~~~~L  514 (933)
                      +|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..++. |
T Consensus       208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L  286 (461)
T 1z7x_W          208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-L  286 (461)
T ss_dssp             TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-C
T ss_pred             CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-c
Confidence            9988874    4666777889999999999887542     22223578899999999988753    5666666666 9


Q ss_pred             ceeecCCCcCCCCcchhccC-----CCCCCEEEccCCcCccc----cCccc-cCCCCceEEeecCcCcccCchhhcc---
Q 002350          515 EILSMSKNHLEGNVPVQLNN-----LERLRILDISENRLSGP----IASSL-NLSSVEHLSLQKNALNGLIPGELFR---  581 (933)
Q Consensus       515 ~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~---  581 (933)
                      ++|++++|.+++..+..+..     .++|+.|++++|.+++.    ++..+ .+++|++|++++|.+++..+..+..   
T Consensus       287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  366 (461)
T 1z7x_W          287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  366 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence            99999999887654444432     36899999999988765    33344 6789999999999887665555543   


Q ss_pred             --CCCccEEeCcCCcCcc----cCchhhhcCCCccEEEcCCCcCCCCCchhhh-----cCCCCCEEEccCCcCCCCCCch
Q 002350          582 --SCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-----QLQKLAMMDLSRNKFSGSIPPC  650 (933)
Q Consensus       582 --l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~g~~p~~  650 (933)
                        .++|++|++++|++++    .+|..+..+++|++|++++|++++.-...+.     ...+|+.|++.++.+....+..
T Consensus       367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence              6789999999999986    6788888899999999999998754222222     2346888888888776544444


Q ss_pred             hh
Q 002350          651 FA  652 (933)
Q Consensus       651 ~~  652 (933)
                      +.
T Consensus       447 l~  448 (461)
T 1z7x_W          447 LQ  448 (461)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.5e-28  Score=267.60  Aligned_cols=250  Identities=20%  Similarity=0.261  Sum_probs=178.0

Q ss_pred             CccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEc
Q 002350          391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF  470 (933)
Q Consensus       391 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  470 (933)
                      +++.++++++.++ .+|..+.  +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3444444444443 2333222  34555555555554 233333455566666666666666555666666677777777


Q ss_pred             cCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC--CcchhccCCCCCCEEEccCCcC
Q 002350          471 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENRL  548 (933)
Q Consensus       471 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l  548 (933)
                      ++|.++ .+|..+.  ++|++|++++|++++..+..+..++. |+.|++++|.+..  ..+..+.++++|+.|++++|++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            777666 3444433  67888888888887666666666666 8888888888753  5677788889999999999988


Q ss_pred             ccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350          549 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  628 (933)
Q Consensus       549 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  628 (933)
                      .......  .++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus       184 ~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          184 TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             CSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             ccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence            7643332  278999999999998888888999999999999999999887788889999999999999998 6888889


Q ss_pred             cCCCCCEEEccCCcCCCCCCchh
Q 002350          629 QLQKLAMMDLSRNKFSGSIPPCF  651 (933)
Q Consensus       629 ~l~~L~~L~Ls~N~l~g~~p~~~  651 (933)
                      .+++|+.|++++|++++..+..|
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cCCCcCEEECCCCcCCccChhhc
Confidence            99999999999999986554444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=6.8e-29  Score=272.24  Aligned_cols=287  Identities=18%  Similarity=0.168  Sum_probs=223.7

Q ss_pred             CCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEc
Q 002350          342 KLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDL  421 (933)
Q Consensus       342 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  421 (933)
                      +++.++++++.++.++   ....+.|++|++++|.+++..|..+ ..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip---~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVP---KEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCC---SCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccC---CCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4555666655555432   1223567777777777763334344 34788888888888888777778888888888888


Q ss_pred             CCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcccc--ccccccccCCCCCCEEEccCCcC
Q 002350          422 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS--GKIKDGLLSSTSLQVLDISNNML  499 (933)
Q Consensus       422 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l  499 (933)
                      ++|++. .+|..++   ++|++|++++|.+.+..+..+..+++|++|++++|.++  +..+..+..+ +|++|++++|++
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            888887 6666543   68888888888888777777888889999999998885  3566677777 899999999998


Q ss_pred             CCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchh
Q 002350          500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGE  578 (933)
Q Consensus       500 ~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~  578 (933)
                      + .+|..+.   .+|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+ .+++|++|++++|+++ .+|..
T Consensus       185 ~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          185 T-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             S-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred             C-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence            7 4665543   349999999999998888889999999999999999998887666 8899999999999998 67888


Q ss_pred             hccCCCccEEeCcCCcCcccCchhhhc------CCCccEEEcCCCcCC--CCCchhhhcCCCCCEEEccCCc
Q 002350          579 LFRSCKLVTLNLRDNTFSGRIPHQINE------HSNLRFLLLGGNHLQ--GPIPDQLCQLQKLAMMDLSRNK  642 (933)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~  642 (933)
                      +..+++|++|++++|++++..+..+..      ...|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999999999999776666654      367899999999987  6778889999999999999885

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.3e-30  Score=279.58  Aligned_cols=275  Identities=19%  Similarity=0.200  Sum_probs=152.5

Q ss_pred             CCChHHHHHHHHHhhhhcccccccccCCCCCCCCCC--CCCCCCCCCCCcccceeEecC--------CCCcEEEEecCCC
Q 002350           26 KACLETERTALLQIKSFFISASDIEYKDSILSSWVD--DDDDDGMPSDCCHWQRVKCNA--------TTGRVMQLSLKNT   95 (933)
Q Consensus        26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~--~~~~~~~~~~~C~w~gv~c~~--------~~~~V~~l~l~~~   95 (933)
                      ..+..+|++||++||+++..+     +.+.+++|..  ...     .++|.|.|+.|+.        ..++|+.+++++ 
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~-----~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-   90 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNAD-----RNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRS-   90 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHC-----CTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-
T ss_pred             cccCchHHHHHHHHHHhccCC-----chhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccC-
Confidence            346678999999999988432     3456788831  222     6799999999963        224455555544 


Q ss_pred             CCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 002350           96 TRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLI  175 (933)
Q Consensus        96 ~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  175 (933)
                                                     |.+. .++    ..+.++++|++|+|++|.++ .+|..++++++|++|+
T Consensus        91 -------------------------------n~l~-~lp----~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~  133 (328)
T 4fcg_A           91 -------------------------------VPLP-QFP----DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT  133 (328)
T ss_dssp             -------------------------------SCCS-SCC----SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE
T ss_pred             -------------------------------CCch-hcC----hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE
Confidence                                           4433 222    23344444444444444444 3444444444444444


Q ss_pred             cCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCC---------CCCCCEEEccCCcCCCCCchhccCCCCCCE
Q 002350          176 LHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKN---------LTRLKILDISSNQLNGSLPSVISNLTSLEY  246 (933)
Q Consensus       176 Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  246 (933)
                      |++|.++ .+| ..+.++++|++|++++|.+.+.+|..++.         +++|++|++++|+++ .+|..++++++|++
T Consensus       134 Ls~n~l~-~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~  210 (328)
T 4fcg_A          134 LARNPLR-ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS  210 (328)
T ss_dssp             EESCCCC-CCC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred             CCCCccc-cCc-HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence            4444444 222 23444444444444444444444443332         555555555555555 44555555555555


Q ss_pred             EECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCC
Q 002350          247 LDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN  326 (933)
Q Consensus       247 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  326 (933)
                      |++++|.+++ +|. .+.++++|++|++++|.....++ ..+..+++|++|++++|++.+.+|..+..+++|++|++++|
T Consensus       211 L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          211 LKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             EEEESSCCCC-CCG-GGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             EEccCCCCCc-Cch-hhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            5555555543 221 24444444444444333322221 13445566667777777777777777777777777777777


Q ss_pred             CCcccchhHHHhCCCCCCEEEcCCCCCcC
Q 002350          327 KLVGNFPTWLLRNNPKLEVLLLKNNSFSG  355 (933)
Q Consensus       327 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  355 (933)
                      .+.+.+|.++. .+++|+.+++..+.+..
T Consensus       288 ~~~~~iP~~l~-~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          288 VNLSRLPSLIA-QLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             TTCCCCCGGGG-GSCTTCEEECCGGGSCC
T ss_pred             CchhhccHHHh-hccCceEEeCCHHHHHH
Confidence            77777777664 67777777766554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.5e-30  Score=309.85  Aligned_cols=412  Identities=17%  Similarity=0.110  Sum_probs=265.6

Q ss_pred             ccccCCCCCCCEeeCCCCCCc---cccCccc-------c-ccCCCCCCCCEEeCCCCcCCCcchhhhcC-CC-CCCEEec
Q 002350          110 MSLFHPLEELQSLDLSVNIFT---YDSKVAA-------Y-DSLRSLKQLKILVLGHNYFDDSIFSYLNT-LP-SLCTLIL  176 (933)
Q Consensus       110 ~~~f~~l~~L~~LdLs~n~~~---~~~~~~~-------~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L  176 (933)
                      ...+.++++|++|+|+++...   +.++...       . .....+++|++|+|++|.+++..+..+.. ++ +|++|+|
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            345678999999999886421   1111000       0 11127899999999999998877777766 34 4999999


Q ss_pred             CCCc-ccCccChhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEccCCcCCCC----CchhccCCCCCCEE
Q 002350          177 HWNR-IEGSQTNQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYL  247 (933)
Q Consensus       177 s~n~-i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L  247 (933)
                      ++|. +...........+++|++|+|++|.+++.    ++..+.++++|++|++++|.+++.    ++..+.++++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            9987 22111112345899999999999998765    455667899999999999999743    34556789999999


Q ss_pred             ECCCCcCCCCCChhhhhcCCCCceEecccccCccc--cccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccC
Q 002350          248 DLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLH--VKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH  325 (933)
Q Consensus       248 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  325 (933)
                      ++++|.+.+ ++ ..+.++++|++|+++.......  .....+..+++|+.|+++++. .+.+|..+..+++|++|++++
T Consensus       226 ~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          226 KVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             ECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETT
T ss_pred             eccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCC
Confidence            999999876 44 6789999999999986433221  112355667889999888753 345777788888999999999


Q ss_pred             CCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCC-cccCCCccEEEccC-----------CcCCCCCChhhhhcCCCcc
Q 002350          326 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP-KAKHDFLHHLDISC-----------NNFRGKLPHNMGVILQKLM  393 (933)
Q Consensus       326 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~Ls~-----------n~l~~~~p~~~~~~l~~L~  393 (933)
                      |.+++.....+...+++|++|+++ +.+.+..... ...+++|++|++++           +.+++.....+...+++|+
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            987765554555688888888888 4333221111 23567788888873           4554333333344577777


Q ss_pred             EEEccCCCCCCCccccccC-CCCCCEEEcC----CCcCCCCc----chhhhcCCCCCCEEECcCCc--CCCcCchhhc-c
Q 002350          394 YMDISKNCFEGNIPYSAGE-MKELSLLDLS----RNYFSGGL----SQSVVTGCFSLELLDLSNNN--FEGQFFSEYM-N  461 (933)
Q Consensus       394 ~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~~----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~  461 (933)
                      +|+++.|.+++..+..+.. +++|+.|+++    .|.+++..    -...+.++++|++|++++|.  +++..+..+. .
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~  461 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY  461 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence            7777777776655555554 6777777775    44555320    11223456667777765433  4444333333 2


Q ss_pred             cCcCCeEEccCcccccc-ccccccCCCCCCEEEccCCcCCCCChhh-HhhhccccceeecCCCcCCC
Q 002350          462 LTRLRHLYFENNNFSGK-IKDGLLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEG  526 (933)
Q Consensus       462 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~L~~L~L~~n~l~~  526 (933)
                      +++|++|++++|.+++. ++..+..+++|++|++++|.+++..... ...++. |+.|++++|++++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~ls~n~it~  527 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS-LRYLWVQGYRASM  527 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS-CCEEEEESCBCCT
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc-cCeeECcCCcCCH
Confidence            56666666666666542 2333355566666666666654332222 223333 5555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=9.4e-30  Score=302.97  Aligned_cols=397  Identities=12%  Similarity=0.050  Sum_probs=257.2

Q ss_pred             CCCCCCEEEcCCCCCcCcCcCCccc-CCC-ccEEEccCCc-CCCCCChhhhhcCCCccEEEccCCCCCCC----cccccc
Q 002350          339 NNPKLEVLLLKNNSFSGILQLPKAK-HDF-LHHLDISCNN-FRGKLPHNMGVILQKLMYMDISKNCFEGN----IPYSAG  411 (933)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~~-L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~  411 (933)
                      .+++|++|+|++|.+++.....+.. ++. |++|++++|. ++......+...+++|++|++++|.+++.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4566666666666554332222222 233 6666666665 11111111223467777777777766544    333345


Q ss_pred             CCCCCCEEEcCCCcCCCCcc---hhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcccc---ccccccccC
Q 002350          412 EMKELSLLDLSRNYFSGGLS---QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS---GKIKDGLLS  485 (933)
Q Consensus       412 ~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~  485 (933)
                      .+++|++|++++|.+.+.-.   ..++..+++|++|++++|.+.+ ++..+..+++|++|+++.+...   +..+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            66777777777777652111   1234567788888888887775 5566777888888888753322   233455677


Q ss_pred             CCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCcCccccCccc-cCCCCce
Q 002350          486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEH  563 (933)
Q Consensus       486 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~  563 (933)
                      +++|+.|+++++.. +.+|..+..++. |++|++++|.+++... ..+..+++|+.|+++++-..+.++... .+++|++
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccch-hHHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            78888888887643 366776666666 9999999988765433 446788999999998432223333333 6788999


Q ss_pred             EEeec-----------CcCcccC-chhhccCCCccEEeCcCCcCcccCchhhhc-CCCccEEEcC----CCcCCCC----
Q 002350          564 LSLQK-----------NALNGLI-PGELFRSCKLVTLNLRDNTFSGRIPHQINE-HSNLRFLLLG----GNHLQGP----  622 (933)
Q Consensus       564 L~L~~-----------n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~----~N~l~~~----  622 (933)
                      |++++           |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            99983           4555332 223455889999999888888777777765 8889999995    6777764    


Q ss_pred             -CchhhhcCCCCCEEEccCCc--CCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhh
Q 002350          623 -IPDQLCQLQKLAMMDLSRNK--FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW  699 (933)
Q Consensus       623 -~p~~l~~l~~L~~L~Ls~N~--l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (933)
                       ++..+.++++|+.|++++|.  +++..+..++                                               
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----------------------------------------------  459 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----------------------------------------------  459 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------------------------------------------
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------------------------------------------
Confidence             44457778899999987543  3321111110                                               


Q ss_pred             hhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCC-CCChhhhhccccCeeeccccccccc-cchhcc
Q 002350          700 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGS-IPESFS  777 (933)
Q Consensus       700 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~  777 (933)
                                                   ..+++|+.|++++|++++ .++..+..+++|+.|+|++|.+++. ++..+.
T Consensus       460 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          460 -----------------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             -----------------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             -----------------------------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence                                         124578889999999886 3455567788999999999998765 444556


Q ss_pred             CCCCCCEEECcCCeecccCCcCC-cCCCCCCeEEccCC
Q 002350          778 NLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVSYN  814 (933)
Q Consensus       778 ~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N  814 (933)
                      .+++|++|+|++|++++.....+ ..++.+....+..+
T Consensus       511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            78999999999999886544333 34566666555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.8e-28  Score=266.75  Aligned_cols=283  Identities=15%  Similarity=0.151  Sum_probs=199.3

Q ss_pred             CCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccce
Q 002350          437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEI  516 (933)
Q Consensus       437 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~  516 (933)
                      .|+.....+.+++.++.. |..+  .++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++. |++
T Consensus        29 ~C~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCE
T ss_pred             CCCCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC-CCE
Confidence            455666788888887743 4433  257888888888888666667888888888888888888666666777766 888


Q ss_pred             eecCCCcCCCCcchhccCCCCCCEEEccCCcCccccC-ccc-cCCCCceEEeecC-cCcccCchhhccCCCccEEeCcCC
Q 002350          517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKN-ALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       517 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      |++++|++++..+..+.++++|++|++++|++.+..+ ..+ .+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            8888888886655667888888888888888876544 344 6788888888887 466666667777778888888888


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  673 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~  673 (933)
                      ++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+...                   
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-------------------  245 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG-------------------  245 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc-------------------
Confidence            8777777777777777777777777764333334557777777777777765433322110                   


Q ss_pred             CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350          674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  753 (933)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  753 (933)
                                                                                                     .
T Consensus       246 -------------------------------------------------------------------------------~  246 (353)
T 2z80_A          246 -------------------------------------------------------------------------------E  246 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             hccccCeeecccccccc----ccchhccCCCCCCEEECcCCeecccCCcC-CcCCCCCCeEEccCCcCcccCCC
Q 002350          754 QLQAILALNLSNNSLSG----SIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       754 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      ....++.++|++|.+++    .+|..++++++|++|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            12233344444444433    46778888888999999999888 55655 58888999999999988887763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=263.90  Aligned_cols=285  Identities=20%  Similarity=0.214  Sum_probs=229.4

Q ss_pred             cCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCC
Q 002350          411 GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQ  490 (933)
Q Consensus       411 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  490 (933)
                      ..++.....+++++.++ .+|..+.   ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34566677899999998 7887553   5899999999999988777899999999999999999988888899999999


Q ss_pred             EEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCc-CccccCccc-cCCCCceEEee
Q 002350          491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENR-LSGPIASSL-NLSSVEHLSLQ  567 (933)
Q Consensus       491 ~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~l~~L~~L~L~  567 (933)
                      +|++++|++++..+..+..++. |++|++++|++++..+ ..+..+++|++|++++|+ +.+..+..+ ++++|++|+++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            9999999999555555777777 9999999999995444 478999999999999994 666666666 89999999999


Q ss_pred             cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh---cCCCCCEEEccCCcCC
Q 002350          568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC---QLQKLAMMDLSRNKFS  644 (933)
Q Consensus       568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~  644 (933)
                      +|.+.+..|..+..+++|++|++++|++....+..+..+++|++|++++|++++..+..+.   ..+.++.++++++.++
T Consensus       183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred             CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence            9999999999999999999999999999754444456799999999999999986655443   2344555555444433


Q ss_pred             CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhcccee
Q 002350          645 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE  724 (933)
Q Consensus       645 g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  724 (933)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (353)
T 2z80_A          263 --------------------------------------------------------------------------------  262 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350          725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  797 (933)
Q Consensus       725 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  797 (933)
                                      +|.+. .+|+.++.+++|+.|+|++|+++...+..|+++++|++|+|++|++++..|
T Consensus       263 ----------------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          263 ----------------DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----------------HHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ----------------Ccchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                            22222 457778888889999999999884433446889999999999998886544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.6e-27  Score=256.53  Aligned_cols=249  Identities=21%  Similarity=0.271  Sum_probs=193.2

Q ss_pred             EEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc--cCccc-cCCCCceEEee
Q 002350          491 VLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP--IASSL-NLSSVEHLSLQ  567 (933)
Q Consensus       491 ~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~-~l~~L~~L~L~  567 (933)
                      .++.+++.++ .+|..+   +.+|++|++++|+++...+..|.++++|+.|++++|++...  .+..+ .+++|++|+++
T Consensus        11 ~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            4555555554 444432   22367777777776644444567777777777777777633  12233 67777788887


Q ss_pred             cCcCcccCchhhccCCCccEEeCcCCcCcccCc-hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCC-
Q 002350          568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG-  645 (933)
Q Consensus       568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-  645 (933)
                      +|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++ 
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            777764 46667888888888888888886554 578888899999999999888888888889999999999998875 


Q ss_pred             CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceee
Q 002350          646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  725 (933)
Q Consensus       646 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  725 (933)
                      .+|..+..                                                                        
T Consensus       166 ~~~~~~~~------------------------------------------------------------------------  173 (306)
T 2z66_A          166 FLPDIFTE------------------------------------------------------------------------  173 (306)
T ss_dssp             EECSCCTT------------------------------------------------------------------------
T ss_pred             cchhHHhh------------------------------------------------------------------------
Confidence            34443322                                                                        


Q ss_pred             ecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC-
Q 002350          726 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN-  804 (933)
Q Consensus       726 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-  804 (933)
                           +++|+.||+++|++++..|..++.+++|+.|+|++|++++..+..+.++++|++|||++|++++.+|..+..++ 
T Consensus       174 -----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          174 -----LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             -----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             -----CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence                 34678899999999988899999999999999999999988888899999999999999999999999999985 


Q ss_pred             CCCeEEccCCcCcccCC
Q 002350          805 FLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       805 ~L~~L~ls~N~l~g~~p  821 (933)
                      +|++|++++|+++|.++
T Consensus       249 ~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          249 SLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TCCEEECTTCCEECSGG
T ss_pred             cCCEEEccCCCeecccC
Confidence            99999999999988665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.8e-27  Score=255.55  Aligned_cols=222  Identities=20%  Similarity=0.288  Sum_probs=154.1

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                      ++.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+ .+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            445555555544 34444444555555555555554 333333 4555555555555555 4455555566666666666


Q ss_pred             CcCcccCchhhh---------cCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCC
Q 002350          593 NTFSGRIPHQIN---------EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD  663 (933)
Q Consensus       593 N~l~~~~p~~l~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~  663 (933)
                      |++.+.+|..+.         .+++|++|++++|+++ .+|..+.++++|+.|++++|++++ +|..+..          
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~----------  227 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH----------  227 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG----------
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc----------
Confidence            555555555543         4788888888888887 677778888888888888888874 4444432          


Q ss_pred             ccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCc
Q 002350          664 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ  743 (933)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  743 (933)
                                                                                         +++|+.|+|++|+
T Consensus       228 -------------------------------------------------------------------l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          228 -------------------------------------------------------------------LPKLEELDLRGCT  240 (328)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECTTCT
T ss_pred             -------------------------------------------------------------------CCCCCEEECcCCc
Confidence                                                                               2356778888888


Q ss_pred             CCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCc
Q 002350          744 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS  817 (933)
Q Consensus       744 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  817 (933)
                      +.+.+|..++.+++|+.|+|++|++.+.+|..++++++|++|||++|++.+.+|..+..++.|+.++++.|.+.
T Consensus       241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888877553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.8e-26  Score=262.62  Aligned_cols=250  Identities=20%  Similarity=0.239  Sum_probs=210.8

Q ss_pred             CCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee
Q 002350          489 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ  567 (933)
Q Consensus       489 L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~  567 (933)
                      ...++.++..++ .+|..+   +.+++.|+|++|++++..+..|.++++|+.|++++|++.+..+..+ ++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456666666665 566543   2348888888888887778888888899999999998888877777 78899999999


Q ss_pred             cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chhhhcCCCCCEEEccCCcCCCC
Q 002350          568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMMDLSRNKFSGS  646 (933)
Q Consensus       568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~  646 (933)
                      +|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|...+.+ +..|.++++|+.|++++|++++ 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            99988877777888999999999999999777778899999999999985444444 4568999999999999999874 


Q ss_pred             CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeee
Q 002350          647 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY  726 (933)
Q Consensus       647 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  726 (933)
                      +|. +                                                                           
T Consensus       211 ~~~-~---------------------------------------------------------------------------  214 (452)
T 3zyi_A          211 MPN-L---------------------------------------------------------------------------  214 (452)
T ss_dssp             CCC-C---------------------------------------------------------------------------
T ss_pred             ccc-c---------------------------------------------------------------------------
Confidence            232 1                                                                           


Q ss_pred             cCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCC
Q 002350          727 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL  806 (933)
Q Consensus       727 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  806 (933)
                        ..+++|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|
T Consensus       215 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          215 --TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             --TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             --cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence              124578889999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             CeEEccCCcCcccCC
Q 002350          807 SIFNVSYNNLSGRTP  821 (933)
Q Consensus       807 ~~L~ls~N~l~g~~p  821 (933)
                      +.|++++|++.+.+.
T Consensus       293 ~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          293 VELHLHHNPWNCDCD  307 (452)
T ss_dssp             CEEECCSSCEECSTT
T ss_pred             CEEEccCCCcCCCCC
Confidence            999999999988765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.2e-26  Score=260.27  Aligned_cols=250  Identities=21%  Similarity=0.270  Sum_probs=210.8

Q ss_pred             CCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee
Q 002350          489 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ  567 (933)
Q Consensus       489 L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~  567 (933)
                      .+.++.++..++ .+|..+.   .+++.|+|++|++++..+..|.++++|+.|++++|++.+..+..+ ++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456777777776 6665443   348888888888887777888888899999999998888777777 78889999999


Q ss_pred             cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCC-chhhhcCCCCCEEEccCCcCCCC
Q 002350          568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMMDLSRNKFSGS  646 (933)
Q Consensus       568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~  646 (933)
                      +|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|+..+.+ +..|.++++|+.|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            99988777778889999999999999998777778899999999999985444444 457899999999999999987 3


Q ss_pred             CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeee
Q 002350          647 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY  726 (933)
Q Consensus       647 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  726 (933)
                      +|. +                                                                           
T Consensus       200 ~~~-~---------------------------------------------------------------------------  203 (440)
T 3zyj_A          200 IPN-L---------------------------------------------------------------------------  203 (440)
T ss_dssp             CCC-C---------------------------------------------------------------------------
T ss_pred             ccc-c---------------------------------------------------------------------------
Confidence            342 1                                                                           


Q ss_pred             cCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCC
Q 002350          727 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL  806 (933)
Q Consensus       727 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  806 (933)
                        ..+++|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|
T Consensus       204 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          204 --TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             --TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             --CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence              124578889999999999889999999999999999999999999999999999999999999998888889999999


Q ss_pred             CeEEccCCcCcccCC
Q 002350          807 SIFNVSYNNLSGRTP  821 (933)
Q Consensus       807 ~~L~ls~N~l~g~~p  821 (933)
                      +.|++++|++.+.+.
T Consensus       282 ~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CEEECCSSCEECSST
T ss_pred             CEEEcCCCCccCCCC
Confidence            999999999988764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-26  Score=247.86  Aligned_cols=208  Identities=21%  Similarity=0.208  Sum_probs=127.1

Q ss_pred             CCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCc-CcccCchhhhcCCCccEEEc
Q 002350          537 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLL  614 (933)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L  614 (933)
                      +|+.|++++|++++..+..+ .+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444444333333 44445555555555554555555566666666666665 55444556666666666666


Q ss_pred             CCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcccc
Q 002350          615 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  694 (933)
Q Consensus       615 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (933)
                      ++|++++..|..+.++++|++|++++|++++..+..+..                                         
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------  151 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------------------------------  151 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------------------------------
Confidence            666666655666666666666666666665433332221                                         


Q ss_pred             chhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccch
Q 002350          695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE  774 (933)
Q Consensus       695 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  774 (933)
                                                          +++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|.
T Consensus       152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence                                                23456667777776655555566777777777777777777777


Q ss_pred             hccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          775 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       775 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      .|+++++|+.|++++|++++..|..+..+++|++|++++|++.+.++
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            77777777777777777776555567777777777777777776555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=6.6e-29  Score=295.81  Aligned_cols=456  Identities=14%  Similarity=0.102  Sum_probs=246.2

Q ss_pred             CCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCcc-----------ccc
Q 002350           71 DCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVA-----------AYD  139 (933)
Q Consensus        71 ~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~-----------~~~  139 (933)
                      -|++|+++..    ....++++.+...         ......+.++++|++|+++++.........           ...
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~---------~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~   99 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYA---------VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA   99 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTS---------SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHH
T ss_pred             HHHHHHHhhh----hhceEEeeccccc---------cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHH
Confidence            3778999832    2334556654322         123345778999999999987532211100           001


Q ss_pred             cCCCCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEecCCC-cccCccChhhhcCCCCCCEEECCCCCCCCcchhhc---
Q 002350          140 SLRSLKQLKILVLGHNYFDDSIFSYLN-TLPSLCTLILHWN-RIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL---  214 (933)
Q Consensus       140 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---  214 (933)
                      ....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.........++++|++|+|++|.+++..+..+   
T Consensus       100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            124678999999999999887777775 6899999999998 45433222344589999999999999877554444   


Q ss_pred             -CCCCCCCEEEccCCcCCCCCch----hccCCCCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCcccc-----c
Q 002350          215 -KNLTRLKILDISSNQLNGSLPS----VISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHV-----K  284 (933)
Q Consensus       215 -~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-----~  284 (933)
                       ..+++|++|++++|. ......    .+.++++|++|++++|...+.++ ..+.++++|++|+++.+......     .
T Consensus       180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l  257 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGL  257 (594)
T ss_dssp             CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred             hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHHH
Confidence             367799999999987 212222    23457999999999884222233 56778888888887654320000     0


Q ss_pred             cCCCCCCCcceEE-EccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCccc
Q 002350          285 TENWLPTSQLIVL-GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAK  363 (933)
Q Consensus       285 ~~~~~~~~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  363 (933)
                      ...+..+++|+.| .+..... +.++..+..+++|++|++++|.+++.....+...+++|++|++++| +..        
T Consensus       258 ~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~--------  327 (594)
T 2p1m_B          258 SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED--------  327 (594)
T ss_dssp             HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH--------
T ss_pred             HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH--------
Confidence            0023344455555 2222111 2233333445555555555555443333333334555555555544 221        


Q ss_pred             CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccC---------CCCCCCcccccc-CCCCCCEEEcCCCcCCCCcchh
Q 002350          364 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK---------NCFEGNIPYSAG-EMKELSLLDLSRNYFSGGLSQS  433 (933)
Q Consensus       364 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~---------n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~  433 (933)
                                      .....+...+++|++|++++         +.+++.....+. .+++|+.|.++.|.+++.....
T Consensus       328 ----------------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~  391 (594)
T 2p1m_B          328 ----------------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT  391 (594)
T ss_dssp             ----------------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred             ----------------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence                            11111222244444444422         222221111111 2455555555555554333333


Q ss_pred             hhcCCCCCCEEECc--C----CcCCCc-----CchhhcccCcCCeEEccCccccccccccccC-CCCCCEEEccCCcCCC
Q 002350          434 VVTGCFSLELLDLS--N----NNFEGQ-----FFSEYMNLTRLRHLYFENNNFSGKIKDGLLS-STSLQVLDISNNMLSG  501 (933)
Q Consensus       434 ~~~~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~  501 (933)
                      +...+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++
T Consensus       392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~  470 (594)
T 2p1m_B          392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD  470 (594)
T ss_dssp             HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred             HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence            33345555555555  2    233311     111234556666666655 444433333433 5666777777666654


Q ss_pred             CChhhH-hhhccccceeecCCCcCCCCcch-hccCCCCCCEEEccCCcCccccCccc--cCCCCceEEeecC
Q 002350          502 HIPHWM-GNFSSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSGPIASSL--NLSSVEHLSLQKN  569 (933)
Q Consensus       502 ~~p~~l-~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~--~l~~L~~L~L~~n  569 (933)
                      ..+..+ ..++. |+.|++++|.+++.... ....+++|+.|++++|+++......+  .++.|+...+..+
T Consensus       471 ~~~~~l~~~~~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          471 LGMHHVLSGCDS-LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HHHHHHHHHCTT-CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHHHHHhcCCC-cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            444444 33444 77777777766443332 33446677777777776643222222  4556655555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.2e-26  Score=258.85  Aligned_cols=250  Identities=24%  Similarity=0.286  Sum_probs=219.5

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                      ...++.++..++ .+|..+.  ++++.|++++|++.+..+..+ ++++|++|+|++|.+.+..+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            567888888887 5676554  689999999999998888777 899999999999999998889999999999999999


Q ss_pred             CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCc-hhhhhhccccCCCCccCCCCCC
Q 002350          593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLN  671 (933)
Q Consensus       593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~l~~~~~~~~~~~~~~  671 (933)
                      |++++..+..|..+++|++|+|++|++++..+..|.++++|+.|++++|+..+.+|. .|                    
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--------------------  181 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--------------------  181 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--------------------
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--------------------
Confidence            999977777899999999999999999987788999999999999999665544443 12                    


Q ss_pred             CCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChh
Q 002350          672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD  751 (933)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  751 (933)
                                                                               ..+++|+.|+|++|+++ .+| .
T Consensus       182 ---------------------------------------------------------~~l~~L~~L~L~~n~l~-~~~-~  202 (440)
T 3zyj_A          182 ---------------------------------------------------------EGLSNLRYLNLAMCNLR-EIP-N  202 (440)
T ss_dssp             ---------------------------------------------------------TTCSSCCEEECTTSCCS-SCC-C
T ss_pred             ---------------------------------------------------------hcccccCeecCCCCcCc-ccc-c
Confidence                                                                     12457889999999998 666 4


Q ss_pred             hhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccC
Q 002350          752 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFD  830 (933)
Q Consensus       752 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~  830 (933)
                      +..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|++++..+.. ..+..+.
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            889999999999999999999999999999999999999999999999999999999999999999877654 5566777


Q ss_pred             cccccCCCCCCCccc
Q 002350          831 ESSYRGNPSLCAWLI  845 (933)
Q Consensus       831 ~~~~~gN~~lc~~~l  845 (933)
                      ...+.+||+.|+|.+
T Consensus       283 ~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          283 RIHLHHNPWNCNCDI  297 (440)
T ss_dssp             EEECCSSCEECSSTT
T ss_pred             EEEcCCCCccCCCCc
Confidence            888999999998853

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.2e-26  Score=246.39  Aligned_cols=252  Identities=21%  Similarity=0.257  Sum_probs=203.7

Q ss_pred             CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeec
Q 002350          490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK  568 (933)
Q Consensus       490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~  568 (933)
                      ++++.+++.++ .+|..+   +.+|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+ .+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56677777666 555433   2348888888888887666778888888888888888887777766 788888888888


Q ss_pred             Cc-CcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCC
Q 002350          569 NA-LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI  647 (933)
Q Consensus       569 n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~  647 (933)
                      |. +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            87 77666888889999999999999999888888999999999999999999877778999999999999999988544


Q ss_pred             CchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeec
Q 002350          648 PPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYN  727 (933)
Q Consensus       648 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  727 (933)
                      +..+..                                                                          
T Consensus       170 ~~~~~~--------------------------------------------------------------------------  175 (285)
T 1ozn_A          170 ERAFRG--------------------------------------------------------------------------  175 (285)
T ss_dssp             TTTTTT--------------------------------------------------------------------------
T ss_pred             HHHhcC--------------------------------------------------------------------------
Confidence            333322                                                                          


Q ss_pred             CCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCC
Q 002350          728 GSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS  807 (933)
Q Consensus       728 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  807 (933)
                         +++|+.|++++|++++..|..++.+++|+.|++++|++++..+..+.++++|+.|+|++|.+....+.. .....++
T Consensus       176 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~  251 (285)
T 1ozn_A          176 ---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQ  251 (285)
T ss_dssp             ---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHH
T ss_pred             ---ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHH
Confidence               346788999999999988999999999999999999999888888999999999999999998654421 1123455


Q ss_pred             eEEccCCcCcccCCCC
Q 002350          808 IFNVSYNNLSGRTPDK  823 (933)
Q Consensus       808 ~L~ls~N~l~g~~p~~  823 (933)
                      .+..+.|.+.+..|..
T Consensus       252 ~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          252 KFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HCCSEECCCBEEESGG
T ss_pred             hcccccCccccCCchH
Confidence            5667888888888854

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.5e-26  Score=258.23  Aligned_cols=250  Identities=23%  Similarity=0.261  Sum_probs=218.6

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                      ...++.++..++ .+|..+.  ++++.|++++|++++..+..+ .+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            567888888887 5666554  689999999999999888888 899999999999999999899999999999999999


Q ss_pred             CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCch-hhhhhccccCCCCccCCCCCC
Q 002350          593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGSDDVLNGSKLN  671 (933)
Q Consensus       593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~l~~~~~~~~~~~~~~  671 (933)
                      |++++..+..+..+++|++|+|++|++++..+..|.++++|+.|++++|+..+.+|.. +                    
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--------------------  192 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--------------------  192 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--------------------
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--------------------
Confidence            9999877788999999999999999999877788999999999999996655444431 2                    


Q ss_pred             CCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChh
Q 002350          672 SPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD  751 (933)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  751 (933)
                                                                               ..+++|+.|+|++|++++ +| .
T Consensus       193 ---------------------------------------------------------~~l~~L~~L~L~~n~l~~-~~-~  213 (452)
T 3zyi_A          193 ---------------------------------------------------------EGLFNLKYLNLGMCNIKD-MP-N  213 (452)
T ss_dssp             ---------------------------------------------------------TTCTTCCEEECTTSCCSS-CC-C
T ss_pred             ---------------------------------------------------------cCCCCCCEEECCCCcccc-cc-c
Confidence                                                                     124578899999999995 55 4


Q ss_pred             hhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccC
Q 002350          752 IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFD  830 (933)
Q Consensus       752 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~  830 (933)
                      +..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.||+++|++++..+.. ..+..+.
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            889999999999999999999999999999999999999999999999999999999999999999776654 4566777


Q ss_pred             cccccCCCCCCCccc
Q 002350          831 ESSYRGNPSLCAWLI  845 (933)
Q Consensus       831 ~~~~~gN~~lc~~~l  845 (933)
                      ...+.+||+.|+|.+
T Consensus       294 ~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          294 ELHLHHNPWNCDCDI  308 (452)
T ss_dssp             EEECCSSCEECSTTT
T ss_pred             EEEccCCCcCCCCCc
Confidence            888999999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.7e-27  Score=258.45  Aligned_cols=250  Identities=18%  Similarity=0.207  Sum_probs=194.2

Q ss_pred             cCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCC-CCcchhcc-------CCCCCCEEEccCCcCccccCcc
Q 002350          484 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE-GNVPVQLN-------NLERLRILDISENRLSGPIASS  555 (933)
Q Consensus       484 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~  555 (933)
                      +..++|++|++++|.+  .+|..+...   |+.|++++|++. ..+|..+.       ++++|++|++++|++++.+|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            4455677888888887  667666543   788888888884 45565554       6888888999888888777764


Q ss_pred             c---cCCCCceEEeecCcCcccCchhhccC-----CCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCC--Cch
Q 002350          556 L---NLSSVEHLSLQKNALNGLIPGELFRS-----CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP--IPD  625 (933)
Q Consensus       556 ~---~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~  625 (933)
                      +   .+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.  .|.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            3   688889999999988877 7777776     8899999999999887778888899999999999988765  344


Q ss_pred             hh--hcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhh
Q 002350          626 QL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL  703 (933)
Q Consensus       626 ~l--~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  703 (933)
                      .+  ..+++|+.|++++|++++ +|.....+.                                                
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~------------------------------------------------  224 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMET-PSGVCSALA------------------------------------------------  224 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCC-HHHHHHHHH------------------------------------------------
T ss_pred             HHHhccCCCCCEEECCCCcCcc-hHHHHHHHH------------------------------------------------
Confidence            44  788999999999998873 111100000                                                


Q ss_pred             hhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCC-hhhhhccccCeeeccccccccccchhccCCCCC
Q 002350          704 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMI  782 (933)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  782 (933)
                                               ..+++|+.|||++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|
T Consensus       225 -------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L  276 (312)
T 1wwl_A          225 -------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL  276 (312)
T ss_dssp             -------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred             -------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence                                     123578889999999998775 45667889999999999998 7787776  899


Q ss_pred             CEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350          783 ESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  818 (933)
Q Consensus       783 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  818 (933)
                      ++|||++|++++. |. +..+++|++|++++|++++
T Consensus       277 ~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          277 SVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             eEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999999999976 66 8899999999999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=9.5e-26  Score=244.25  Aligned_cols=231  Identities=21%  Similarity=0.261  Sum_probs=169.3

Q ss_pred             CCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCc--CchhhcccCcCCeEEccCccccccccccccCCCCCCE
Q 002350          414 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ--FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV  491 (933)
Q Consensus       414 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  491 (933)
                      ++|++|++++|.+. .+|...+..+++|++|++++|.+...  .+..+..+++|++|++++|.++ .++..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence            34455555555544 44444444555555555555555422  2344455666666666666666 34555666777777


Q ss_pred             EEccCCcCCCCCh-hhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcc-ccCccc-cCCCCceEEeec
Q 002350          492 LDISNNMLSGHIP-HWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSL-NLSSVEHLSLQK  568 (933)
Q Consensus       492 L~Ls~n~l~~~~p-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~l~~L~~L~L~~  568 (933)
                      |++++|++++..+ ..+..++. |++|++++|.+.+..+..+..+++|++|++++|++.+ ..|..+ .+++|++|++++
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            7777777764333 34555555 7888888888777777778888888888888888876 456666 788889999999


Q ss_pred             CcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcCCCCC
Q 002350          569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSI  647 (933)
Q Consensus       569 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~  647 (933)
                      |.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|+.|++++|++++..
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            988888888899999999999999999987777889999999999999999998998998884 8999999999998643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.1e-27  Score=258.19  Aligned_cols=264  Identities=20%  Similarity=0.212  Sum_probs=181.0

Q ss_pred             eEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCC
Q 002350          467 HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN  546 (933)
Q Consensus       467 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  546 (933)
                      ..+++.+.+.......+..+++|++|++++|++++..|..+..++. |++|++++|.+++..+  +..+++|++|++++|
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            3344444444333333344556666666666666555555665555 6666666666665443  667777777777777


Q ss_pred             cCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchh
Q 002350          547 RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ  626 (933)
Q Consensus       547 ~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  626 (933)
                      ++++..    ..++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus        91 ~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           91 YVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            766433    2367777777777777654433   467888888888888766777777888888888888888766666


Q ss_pred             hh-cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhh
Q 002350          627 LC-QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK  705 (933)
Q Consensus       627 l~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  705 (933)
                      +. .+++|+.|++++|.+++. |..                                                       
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~-~~~-------------------------------------------------------  187 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV-KGQ-------------------------------------------------------  187 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-ECC-------------------------------------------------------
T ss_pred             HhhccCcCCEEECCCCcCccc-ccc-------------------------------------------------------
Confidence            63 678888888888887632 110                                                       


Q ss_pred             hhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEE
Q 002350          706 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESL  785 (933)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  785 (933)
                                             ..+++|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|
T Consensus       188 -----------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          188 -----------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             -----------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             -----------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence                                   013467778888888884 4555888888888888888888 467778888888888


Q ss_pred             ECcCCeec-ccCCcCCcCCCCCCeEEcc-CCcCcccCC
Q 002350          786 DISYNKLT-GQIPPQLTALNFLSIFNVS-YNNLSGRTP  821 (933)
Q Consensus       786 dLs~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~g~~p  821 (933)
                      ++++|.++ +.+|..+..++.|+.++++ .+.++|..|
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            88888888 7777888888888888888 445655544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.3e-27  Score=256.11  Aligned_cols=249  Identities=19%  Similarity=0.227  Sum_probs=194.1

Q ss_pred             cccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC-CCChhhHh-------hhccccceeecCCCcCCCCcchh
Q 002350          460 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMG-------NFSSELEILSMSKNHLEGNVPVQ  531 (933)
Q Consensus       460 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~~~~~L~~L~L~~n~l~~~~~~~  531 (933)
                      +..++|+.|++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       .++. |++|++++|++++.+|..
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCC
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHH
Confidence            3455666666777666  455544333  666777777663 34555444       4555 888888888888877776


Q ss_pred             c--cCCCCCCEEEccCCcCccccCccc-cC-----CCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCccc--Cch
Q 002350          532 L--NNLERLRILDISENRLSGPIASSL-NL-----SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--IPH  601 (933)
Q Consensus       532 ~--~~l~~L~~L~Ls~n~l~~~~~~~~-~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~  601 (933)
                      +  ..+++|++|++++|++++. |..+ .+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.  .|.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            5  8888999999999998887 5555 44     8999999999999988889999999999999999998765  344


Q ss_pred             hh--hcCCCccEEEcCCCcCCCC--Cc-hhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCcc
Q 002350          602 QI--NEHSNLRFLLLGGNHLQGP--IP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD  676 (933)
Q Consensus       602 ~l--~~l~~L~~L~L~~N~l~~~--~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  676 (933)
                      .+  ..+++|++|++++|++++.  ++ ..+.++++|+.|++++|++++.+|....                        
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------  249 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------------------------  249 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC------------------------
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh------------------------
Confidence            55  8899999999999999842  22 4456889999999999999976642110                        


Q ss_pred             chhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhcc
Q 002350          677 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ  756 (933)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  756 (933)
                                                                          ..+++|+.|||++|+++ .+|..+.  +
T Consensus       250 ----------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~  274 (312)
T 1wwl_A          250 ----------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--A  274 (312)
T ss_dssp             ----------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred             ----------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--C
Confidence                                                                11347888999999999 8888877  8


Q ss_pred             ccCeeeccccccccccchhccCCCCCCEEECcCCeeccc
Q 002350          757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ  795 (933)
Q Consensus       757 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  795 (933)
                      +|+.|+|++|++++. |. +..+++|++|+|++|++++.
T Consensus       275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            999999999999976 66 99999999999999999853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=8e-28  Score=286.49  Aligned_cols=273  Identities=16%  Similarity=0.078  Sum_probs=134.6

Q ss_pred             CCCCCCEEEcCCCCCcCcCcCCcc-cCCCccEEEccCC-cCCCCCChhhhhcCCCccEEEccCCCCCCCccccc----cC
Q 002350          339 NNPKLEVLLLKNNSFSGILQLPKA-KHDFLHHLDISCN-NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA----GE  412 (933)
Q Consensus       339 ~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l----~~  412 (933)
                      .+++|++|++++|.+++.....+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455666666666655443222222 4556666666665 33322122333346666666666666554333322    24


Q ss_pred             CCCCCEEEcCCCc--CCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCc-------cccccccccc
Q 002350          413 MKELSLLDLSRNY--FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN-------NFSGKIKDGL  483 (933)
Q Consensus       413 l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~l  483 (933)
                      +++|++|++++|.  +.......+...+++|++|++++|...+.++..+..+++|++|+++.+       .+.+ ++..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence            5567777777665  211111222334567777777766322225555666677777765443       2232 23355


Q ss_pred             cCCCCCCEE-EccCCcCCCCChhhHhhhccccceeecCCCcCCCCc-chhccCCCCCCEEEccCCcCccc-cCccc-cCC
Q 002350          484 LSSTSLQVL-DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV-PVQLNNLERLRILDISENRLSGP-IASSL-NLS  559 (933)
Q Consensus       484 ~~l~~L~~L-~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~-~l~  559 (933)
                      ..+++|+.| .+.+... +.++..+..++. |+.|++++|.+++.. +..+..+++|+.|++++| +... ++... .++
T Consensus       262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~-L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSR-LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-GGGGGGHHHHTT-CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             hcCCCcccccCCcccch-hhHHHHHHhhCC-CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            666667666 3333222 234444444444 677777766655332 222456666666666666 3221 11112 356


Q ss_pred             CCceEEeec---------CcCcccCchhhc-cCCCccEEeCcCCcCcccCchhhh-cCCCccEEEcC
Q 002350          560 SVEHLSLQK---------NALNGLIPGELF-RSCKLVTLNLRDNTFSGRIPHQIN-EHSNLRFLLLG  615 (933)
Q Consensus       560 ~L~~L~L~~---------n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~  615 (933)
                      +|++|++.+         +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+++
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            666666633         223222112222 255555555555555544443333 35555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.7e-24  Score=252.09  Aligned_cols=261  Identities=26%  Similarity=0.316  Sum_probs=133.1

Q ss_pred             CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350          415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  494 (933)
Q Consensus       415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  494 (933)
                      +++.|++++|.++ .+|..+.   ++|++|++++|.++.. |.   .+++|++|++++|+++ .+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            4667777777766 5555432   5666666666666532 22   3456666666666655 2333   3455666666


Q ss_pred             cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350          495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL  574 (933)
Q Consensus       495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~  574 (933)
                      ++|+++ .+|.   .. .+|+.|++++|++++ +|..   +++|+.|++++|++++.                       
T Consensus       109 s~N~l~-~l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-----------------------  156 (622)
T 3g06_A          109 FSNPLT-HLPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-----------------------  156 (622)
T ss_dssp             CSCCCC-CCCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-----------------------
T ss_pred             cCCcCC-CCCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-----------------------
Confidence            666555 2333   11 225555555555553 3321   24455555555544432                       


Q ss_pred             CchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhh
Q 002350          575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  654 (933)
Q Consensus       575 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l  654 (933)
                       |.   ..++|+.|++++|++++ +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..    
T Consensus       157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~----  219 (622)
T 3g06_A          157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----  219 (622)
T ss_dssp             -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC----
T ss_pred             -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC----
Confidence             21   12345555555555542 33   233455555555555553 2321   245555555555554 12210    


Q ss_pred             hccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcc
Q 002350          655 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV  734 (933)
Q Consensus       655 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  734 (933)
                                                                                                  +++|
T Consensus       220 ----------------------------------------------------------------------------~~~L  223 (622)
T 3g06_A          220 ----------------------------------------------------------------------------PSGL  223 (622)
T ss_dssp             ----------------------------------------------------------------------------CTTC
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        1234


Q ss_pred             cEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350          735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  814 (933)
Q Consensus       735 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  814 (933)
                      +.|+|++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|
T Consensus       224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            555666666553 44   23355566666666665 3343   4455666666666666 55555666666666666666


Q ss_pred             cCcccCC
Q 002350          815 NLSGRTP  821 (933)
Q Consensus       815 ~l~g~~p  821 (933)
                      ++++.+|
T Consensus       295 ~l~~~~~  301 (622)
T 3g06_A          295 PLSERTL  301 (622)
T ss_dssp             CCCHHHH
T ss_pred             CCCCcCH
Confidence            6665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.1e-26  Score=259.63  Aligned_cols=215  Identities=20%  Similarity=0.202  Sum_probs=146.0

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      |+.|++++|.+++..|..|..+++|++|++++|.+++..+ ...+++|++|+|++|.+++..+     .++|++|++++|
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N  109 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN  109 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCC
Confidence            7777777777776666667777777777777777766555 2266777777777777664422     267777777777


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  673 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~  673 (933)
                      .+++..+.   .+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++.+|..+..                    
T Consensus       110 ~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------------------  166 (487)
T 3oja_A          110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------  166 (487)
T ss_dssp             CCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------------------
T ss_pred             cCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------------------
Confidence            77765443   2466777777777777766777777777777777777777655544321                    


Q ss_pred             CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350          674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  753 (933)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  753 (933)
                                                                              .+++|+.|||++|.+++..+  +.
T Consensus       167 --------------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~  188 (487)
T 3oja_A          167 --------------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QV  188 (487)
T ss_dssp             --------------------------------------------------------GTTTCCEEECTTSCCCEEEC--CC
T ss_pred             --------------------------------------------------------hCCcccEEecCCCccccccc--cc
Confidence                                                                    12356667777777775422  23


Q ss_pred             hccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCc
Q 002350          754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS  817 (933)
Q Consensus       754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  817 (933)
                      .+++|+.|+|++|.+++.+| .++.+++|+.|||++|.+++ +|..+..++.|+.|++++|++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            46777777777777776444 37777777777777777774 5666777777777777777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.8e-26  Score=262.79  Aligned_cols=235  Identities=21%  Similarity=0.224  Sum_probs=187.6

Q ss_pred             CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEe
Q 002350          487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL  566 (933)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L  566 (933)
                      ++|++|++++|.+++..|..+..++. |++|+|++|.+++..|  +..+++|+.|++++|++++..+    .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            36667777777776655566666655 7777777777765554  7777788888888887765443    378888888


Q ss_pred             ecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh-cCCCCCEEEccCCcCCC
Q 002350          567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSG  645 (933)
Q Consensus       567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g  645 (933)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88888776554   357899999999999988888889999999999999999988888876 78999999999999885


Q ss_pred             CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceee
Q 002350          646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  725 (933)
Q Consensus       646 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  725 (933)
                      ..+.                                                                            
T Consensus       184 ~~~~----------------------------------------------------------------------------  187 (487)
T 3oja_A          184 VKGQ----------------------------------------------------------------------------  187 (487)
T ss_dssp             EECC----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            3111                                                                            


Q ss_pred             ecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeec-ccCCcCCcCCC
Q 002350          726 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT-GQIPPQLTALN  804 (933)
Q Consensus       726 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~  804 (933)
                         ..+++|+.|||++|.+++. |..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++
T Consensus       188 ---~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          188 ---VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             ---CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             ---ccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence               1135788899999999964 4559999999999999999996 7888999999999999999998 78888888888


Q ss_pred             CCCeEEcc
Q 002350          805 FLSIFNVS  812 (933)
Q Consensus       805 ~L~~L~ls  812 (933)
                      .|+.++++
T Consensus       263 ~L~~l~~~  270 (487)
T 3oja_A          263 RVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CCcEEecc
Confidence            88888876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.6e-26  Score=249.58  Aligned_cols=267  Identities=19%  Similarity=0.204  Sum_probs=204.4

Q ss_pred             ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEEC
Q 002350          367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL  446 (933)
Q Consensus       367 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  446 (933)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+   +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            344455555554 3444555556788888888888887777788888888888888888875443   567888888888


Q ss_pred             cCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC
Q 002350          447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG  526 (933)
Q Consensus       447 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~  526 (933)
                      ++|.+++..     ..++|++|++++|.+++..+..   +++|++|++++|++++..+..+..++. |++|++++|.+++
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCc
Confidence            888877533     3478888888888888655443   577889999999888666666777766 9999999999887


Q ss_pred             Ccchhc-cCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhc
Q 002350          527 NVPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE  605 (933)
Q Consensus       527 ~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  605 (933)
                      ..+..+ ..+++|++|++++|++++. +....+++|++|++++|++++.. ..+..+++|++|++++|+++ .+|..+..
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhc
Confidence            766666 4688899999999988766 33335888999999999988654 45888899999999999988 56778888


Q ss_pred             CCCccEEEcCCCcCC-CCCchhhhcCCCCCEEEccC-CcCCCCCCc
Q 002350          606 HSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSR-NKFSGSIPP  649 (933)
Q Consensus       606 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~  649 (933)
                      +++|+.|++++|++. +.+|..+..+++|+.+++++ +.++|..|.
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            899999999999998 67788888888888888884 445555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=5.2e-24  Score=226.76  Aligned_cols=209  Identities=21%  Similarity=0.240  Sum_probs=147.7

Q ss_pred             CCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC
Q 002350          537 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG  615 (933)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  615 (933)
                      +|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555555444333 55555566666665555555566667777777777777776666677777777777777


Q ss_pred             CCcCCCCCchhhhcCCCCCEEEccCCcCCCC-CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcccc
Q 002350          616 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF  694 (933)
Q Consensus       616 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (933)
                      +|++++..+..+..+++|+.|++++|++++. +|..+.++                                        
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l----------------------------------------  148 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----------------------------------------  148 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------------------------------
Confidence            7777766665677777777777777777652 45544332                                        


Q ss_pred             chhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccC----eeecccccccc
Q 002350          695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL----ALNLSNNSLSG  770 (933)
Q Consensus       695 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~  770 (933)
                                                           ++|+.||+++|++++..+..+..+++|+    .|++++|.+++
T Consensus       149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                 3566778888888776667777777776    78899999987


Q ss_pred             ccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC
Q 002350          771 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK  823 (933)
Q Consensus       771 ~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  823 (933)
                      ..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            66655544 48999999999999777777889999999999999999888754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=2.3e-23  Score=244.25  Aligned_cols=264  Identities=24%  Similarity=0.309  Sum_probs=123.7

Q ss_pred             CCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEc
Q 002350          318 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI  397 (933)
Q Consensus       318 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L  397 (933)
                      ++.|++++|.++ .+|..+.   ++|++|++++|.++.+..    .+++|++|++++|+++ .+|.    .+++|++|++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred             CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence            455555555554 4444321   445555555555444322    3445555555555554 3443    2455555555


Q ss_pred             cCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccc
Q 002350          398 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG  477 (933)
Q Consensus       398 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  477 (933)
                      ++|.+++ +|.   .+++|+.|++++|+++ .+|.    .+++|++|++++|.+++. +.   .+++|+.|++++|.+++
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence            5555543 222   3445555555555554 2332    234555555555555432 11   23445555555555553


Q ss_pred             cccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCcccc
Q 002350          478 KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN  557 (933)
Q Consensus       478 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  557 (933)
                       +|   ..+++|+.|++++|++++ +|..    ..+|+.|++++|.++. +|.   .+++|+.|++++|++++. |  ..
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~-l~~~----~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p--~~  239 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P--VL  239 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C--CC
T ss_pred             -Cc---ccCCCCcEEECCCCCCCC-CCCc----cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C--CC
Confidence             33   224455555555555542 3321    1225555555555552 222   124455555555555442 2  12


Q ss_pred             CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh
Q 002350          558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC  628 (933)
Q Consensus       558 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~  628 (933)
                      +++|+.|++++|+++. +|.   .+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+.
T Consensus       240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            3445555555555542 222   3344555555555555 3444555555555555555555544444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=215.54  Aligned_cols=207  Identities=26%  Similarity=0.309  Sum_probs=165.3

Q ss_pred             CCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC
Q 002350          537 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG  616 (933)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  616 (933)
                      ..+.+++++++++. +|..+ .+++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            45667777777664 33222 25677778888887777667788888888888888888866566678888888888888


Q ss_pred             CcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccch
Q 002350          617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM  696 (933)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (933)
                      |++++..+..|..+++|+.|++++|++++..|..+..                                           
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------  131 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------  131 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence            8888777777888888999999988888655544432                                           


Q ss_pred             hhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhc
Q 002350          697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF  776 (933)
Q Consensus       697 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~  776 (933)
                                                        +++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..|
T Consensus       132 ----------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  177 (270)
T 2o6q_A          132 ----------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF  177 (270)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence                                              3467789999999987666678899999999999999998888889


Q ss_pred             cCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350          777 SNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       777 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      .++++|++|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus       178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            9999999999999999987777789999999999999999887763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=6.3e-23  Score=218.40  Aligned_cols=227  Identities=20%  Similarity=0.214  Sum_probs=181.8

Q ss_pred             EEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCc
Q 002350          492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA  570 (933)
Q Consensus       492 L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~  570 (933)
                      ++..+..+. .+|..+   +.+|++|++++|++++..+..|.++++|++|++++|++.+..+..+ .+++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            344444444 455433   2348888888888887666678888888888888888887777666 78889999999999


Q ss_pred             CcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCC-CchhhhcCCCCCEEEccCCcCCCCCCc
Q 002350          571 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPP  649 (933)
Q Consensus       571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~  649 (933)
                      +++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++. +|..+.++++|+.|++++|++++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            8888888899999999999999999977777889999999999999999874 689999999999999999999876666


Q ss_pred             hhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCC
Q 002350          650 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS  729 (933)
Q Consensus       650 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  729 (933)
                      .+..+..+                                                                        
T Consensus       168 ~~~~l~~L------------------------------------------------------------------------  175 (276)
T 2z62_A          168 DLRVLHQM------------------------------------------------------------------------  175 (276)
T ss_dssp             GGHHHHTC------------------------------------------------------------------------
T ss_pred             Hhhhhhhc------------------------------------------------------------------------
Confidence            66554321                                                                        


Q ss_pred             CCCccc-EEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350          730 NVNRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  797 (933)
Q Consensus       730 ~l~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  797 (933)
                        +.+. .|++++|++++..+..+. ..+|+.|+|++|++++..+..|+++++|+.|+|++|++++..|
T Consensus       176 --~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          176 --PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             --TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             --cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence              1222 699999999966555554 4589999999999998888888999999999999999986543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=3.3e-23  Score=219.75  Aligned_cols=221  Identities=21%  Similarity=0.227  Sum_probs=178.1

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      +..+++.++.+.+..  ....+++|+.|++++|.+.. ++....+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            556677777666433  24567788888888888764 33333788888888888888763  47788889999999999


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  673 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~  673 (933)
                      ++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..                    
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------  155 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------  155 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------
Confidence            998877777888999999999999999877778889999999999999988655544332                    


Q ss_pred             CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350          674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  753 (933)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  753 (933)
                                                                               +++|+.|++++|++++..|..++
T Consensus       156 ---------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~  178 (272)
T 3rfs_A          156 ---------------------------------------------------------LTNLTELDLSYNQLQSLPEGVFD  178 (272)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ---------------------------------------------------------CccCCEEECCCCCcCccCHHHhc
Confidence                                                                     34678899999999987777788


Q ss_pred             hccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC
Q 002350          754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK  823 (933)
Q Consensus       754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  823 (933)
                      .+++|+.|+|++|++++..|..|+++++|+.|+|++|.+.+..       +.|++++++.|.++|.+|..
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            9999999999999999888888999999999999999888654       46888999999999999853

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=3e-22  Score=212.23  Aligned_cols=169  Identities=22%  Similarity=0.289  Sum_probs=107.4

Q ss_pred             CCCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCE
Q 002350           70 SDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI  149 (933)
Q Consensus        70 ~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~  149 (933)
                      .++|.|.|+.|.- .+.++.+++++...        ..++.. +  .+++++|+|++|.+.+..+    ..+.++++|++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l--------~~ip~~-~--~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~   65 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKL--------TAIPSN-I--PADTKKLDLQSNKLSSLPS----KAFHRLTKLRL   65 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCC--------SSCCSC-C--CTTCSEEECCSSCCSCCCT----TSSSSCTTCCE
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCC--------CccCCC-C--CCCCCEEECcCCCCCeeCH----HHhcCCCCCCE
Confidence            4699999999863 23445666665543        122211 1  2467777777777665433    45677777777


Q ss_pred             EeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCc
Q 002350          150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ  229 (933)
Q Consensus       150 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  229 (933)
                      |++++|.++...+..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus        66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A           66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence            7777777765555556667777777777777665443 455666666666666666666656666666666666666666


Q ss_pred             CCCCCchhccCCCCCCEEECCCCcCC
Q 002350          230 LNGSLPSVISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       230 l~~~~p~~l~~l~~L~~L~L~~n~l~  255 (933)
                      +++..+..|..+++|++|++++|.++
T Consensus       145 l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          145 LQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCccCHhHccCCcccceeEecCCcCc
Confidence            66555555666666666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.6e-22  Score=214.53  Aligned_cols=206  Identities=19%  Similarity=0.190  Sum_probs=162.1

Q ss_pred             ccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccE
Q 002350          532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF  611 (933)
Q Consensus       532 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  611 (933)
                      +.++++++.+++++|.++...+..  .+.++.|++++|.+++..+..|..+++|++|++++|.+++..+ . +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence            556777888888888877544333  2678888888888887777888888888888888888885433 2 67888888


Q ss_pred             EEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCc
Q 002350          612 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN  691 (933)
Q Consensus       612 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (933)
                      |++++|+++ .+|..+..+++|+.|++++|++++..|..|.+                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            888888888 57777888888888888888888655554433                                      


Q ss_pred             cccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccc
Q 002350          692 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS  771 (933)
Q Consensus       692 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  771 (933)
                                                             +++|+.|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus       123 ---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          123 ---------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             ---------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ---------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence                                                   23677788888888877777778888889999999998877


Q ss_pred             cchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccC
Q 002350          772 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT  820 (933)
Q Consensus       772 ~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~  820 (933)
                      .+..|.++++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+.+
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            7777788889999999999888 67888888888888888888887755

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.4e-22  Score=214.79  Aligned_cols=205  Identities=23%  Similarity=0.213  Sum_probs=176.6

Q ss_pred             cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEE
Q 002350          557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM  636 (933)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  636 (933)
                      .+++++++++++|.++. +|..+.  ++++.|++++|++++..+..+..+++|++|+|++|++++..+ . ..+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEE
Confidence            67899999999999985 555554  689999999999998888999999999999999999996433 3 789999999


Q ss_pred             EccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHh
Q 002350          637 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE  716 (933)
Q Consensus       637 ~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  716 (933)
                      ++++|+++ .+|..+..                                                               
T Consensus        83 ~Ls~N~l~-~l~~~~~~---------------------------------------------------------------   98 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQT---------------------------------------------------------------   98 (290)
T ss_dssp             ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred             ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence            99999997 55543322                                                               


Q ss_pred             hhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccC
Q 002350          717 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  796 (933)
Q Consensus       717 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i  796 (933)
                                    +++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus        99 --------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G           99 --------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             --------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence                          346888999999999888889999999999999999999988888999999999999999999777


Q ss_pred             CcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350          797 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       797 p~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~  844 (933)
                      +..+..+++|++|++++|+++...+.......+....+.||||.|+|.
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence            777899999999999999999544444555567777889999999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.7e-23  Score=229.20  Aligned_cols=225  Identities=20%  Similarity=0.212  Sum_probs=118.7

Q ss_pred             EEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCc----hhhcccC-cCCeEEccCccccccccccccCC-----CC
Q 002350          419 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLT-RLRHLYFENNNFSGKIKDGLLSS-----TS  488 (933)
Q Consensus       419 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~  488 (933)
                      ++++.|.+++.+|. +....++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46667777655544 33344457777777777666555    4555566 67777777776665555444443     66


Q ss_pred             CCEEEccCCcCCCCChhhHhhh----ccccceeecCCCcCCCCcchhc----cC-CCCCCEEEccCCcCccccCcc----
Q 002350          489 LQVLDISNNMLSGHIPHWMGNF----SSELEILSMSKNHLEGNVPVQL----NN-LERLRILDISENRLSGPIASS----  555 (933)
Q Consensus       489 L~~L~Ls~n~l~~~~p~~l~~~----~~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~Ls~n~l~~~~~~~----  555 (933)
                      |++|++++|++++..+..+...    +.+|++|++++|++++..+..+    .. .++|++|++++|++.+.....    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            6666666666665555544332    1226666666666655444332    22 246666666666655322211    


Q ss_pred             c-cCC-CCceEEeecCcCcccCchhhc----cC-CCccEEeCcCCcCccc----Cchhhhc-CCCccEEEcCCCcCCCCC
Q 002350          556 L-NLS-SVEHLSLQKNALNGLIPGELF----RS-CKLVTLNLRDNTFSGR----IPHQINE-HSNLRFLLLGGNHLQGPI  623 (933)
Q Consensus       556 ~-~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~L~~N~l~~~~  623 (933)
                      + ..+ +|++|+|++|++++..+..+.    .+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|++++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            1 222 555555555555554443332    22 3555555555555532    2333333 235555555555555433


Q ss_pred             ch----hhhcCCCCCEEEccCCcCC
Q 002350          624 PD----QLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       624 p~----~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +.    .+..+++|+.|++++|.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             HHHHHHHHhcCCCccEEEeccCCcc
Confidence            32    2234455555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.7e-22  Score=212.75  Aligned_cols=204  Identities=22%  Similarity=0.259  Sum_probs=139.4

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      |+.|++++|.++. + ..+..+++|++|++++|++.+. +....+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        43 L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           43 IDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             CCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             eeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            5555555555442 1 1245555666666666665542 22225666666666666666666666677777777777777


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  673 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~  673 (933)
                      ++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..                    
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------  179 (272)
T 3rfs_A          120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------------------  179 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred             cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------------
Confidence            777666666777777888888888777666666777788888888888777554443322                    


Q ss_pred             CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350          674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  753 (933)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  753 (933)
                                                                               +++|+.|++++|++++..|..++
T Consensus       180 ---------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~  202 (272)
T 3rfs_A          180 ---------------------------------------------------------LTQLKDLRLYQNQLKSVPDGVFD  202 (272)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ---------------------------------------------------------CccCCEEECCCCcCCccCHHHHh
Confidence                                                                     23567788888888877777778


Q ss_pred             hccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCC
Q 002350          754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN  804 (933)
Q Consensus       754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  804 (933)
                      .+++|+.|+|++|.+.+..       ++|+.|+++.|+++|.+|..++.+.
T Consensus       203 ~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence            8888888888888877543       4678888888888888888777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.4e-23  Score=229.49  Aligned_cols=177  Identities=21%  Similarity=0.224  Sum_probs=92.0

Q ss_pred             EEccCccccccccccccCCCCCCEEEccCCcCCCCCh----hhHhhhccccceeecCCCcCCCCcchhccCC-----CCC
Q 002350          468 LYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP----HWMGNFSSELEILSMSKNHLEGNVPVQLNNL-----ERL  538 (933)
Q Consensus       468 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L  538 (933)
                      ++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++.+|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566677766666655555557777777777665544    4444444236666666666665555554443     566


Q ss_pred             CEEEccCCcCccccCccc-----cC-CCCceEEeecCcCcccCchhhcc-----CCCccEEeCcCCcCcccCc----hhh
Q 002350          539 RILDISENRLSGPIASSL-----NL-SSVEHLSLQKNALNGLIPGELFR-----SCKLVTLNLRDNTFSGRIP----HQI  603 (933)
Q Consensus       539 ~~L~Ls~n~l~~~~~~~~-----~l-~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p----~~l  603 (933)
                      ++|++++|++++..+..+     .+ ++|++|++++|.+++..+..+..     .++|++|++++|++++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666666655444322     22 45555555555555444433322     2355555555555553222    222


Q ss_pred             hcCC-CccEEEcCCCcCCCCCchhhh----cC-CCCCEEEccCCcCC
Q 002350          604 NEHS-NLRFLLLGGNHLQGPIPDQLC----QL-QKLAMMDLSRNKFS  644 (933)
Q Consensus       604 ~~l~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~  644 (933)
                      ..++ +|++|+|++|++++..+..+.    .+ ++|+.||+++|.++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            3333 555555555555544433222    22 35555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.5e-23  Score=234.87  Aligned_cols=243  Identities=18%  Similarity=0.244  Sum_probs=163.0

Q ss_pred             hHhhhccccceeecCCCcCCCCc----chhccCCCCCCEEEccCCc---CccccCccc--------cCCCCceEEeecCc
Q 002350          506 WMGNFSSELEILSMSKNHLEGNV----PVQLNNLERLRILDISENR---LSGPIASSL--------NLSSVEHLSLQKNA  570 (933)
Q Consensus       506 ~l~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~--------~l~~L~~L~L~~n~  570 (933)
                      .+..++. |+.|++++|.+++..    +..+..+++|+.|++++|.   +.+.+|..+        .+++|++|+|++|.
T Consensus        27 ~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           27 VLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3333333 445555554444332    2224455666666666542   223333211        45667777777777


Q ss_pred             Ccc----cCchhhccCCCccEEeCcCCcCcccCchhh----hcC---------CCccEEEcCCCcCC-CCCc---hhhhc
Q 002350          571 LNG----LIPGELFRSCKLVTLNLRDNTFSGRIPHQI----NEH---------SNLRFLLLGGNHLQ-GPIP---DQLCQ  629 (933)
Q Consensus       571 l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~L~~N~l~-~~~p---~~l~~  629 (933)
                      +.+    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|+++ +.+|   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            765    356677788888888888888865444333    333         78888888888887 3444   46778


Q ss_pred             CCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhc
Q 002350          630 LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAI  709 (933)
Q Consensus       630 l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  709 (933)
                      +++|+.|++++|+++.   ..+..+.                                             .        
T Consensus       186 ~~~L~~L~L~~n~l~~---~g~~~l~---------------------------------------------~--------  209 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRP---EGIEHLL---------------------------------------------L--------  209 (386)
T ss_dssp             CTTCCEEECCSSCCCH---HHHHHHH---------------------------------------------H--------
T ss_pred             CCCcCEEECcCCCCCH---hHHHHHH---------------------------------------------H--------
Confidence            8889999998888761   0000000                                             0        


Q ss_pred             hhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC----CCCChhhhhccccCeeeccccccccc----cchhcc--CC
Q 002350          710 DERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT----GEIPSDIGQLQAILALNLSNNSLSGS----IPESFS--NL  779 (933)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l  779 (933)
                                      .....+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+.  ++
T Consensus       210 ----------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  273 (386)
T 2ca6_A          210 ----------------EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN  273 (386)
T ss_dssp             ----------------TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred             ----------------HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence                            00012457888999999986    57888888899999999999999876    677774  48


Q ss_pred             CCCCEEECcCCeecc----cCCcCC-cCCCCCCeEEccCCcCcccCC
Q 002350          780 KMIESLDISYNKLTG----QIPPQL-TALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       780 ~~L~~LdLs~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      ++|++|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999999999998    588777 668999999999999987664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.5e-21  Score=204.31  Aligned_cols=183  Identities=19%  Similarity=0.239  Sum_probs=146.3

Q ss_pred             CCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEcc
Q 002350          560 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS  639 (933)
Q Consensus       560 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  639 (933)
                      ..++++++++.++ .+|..+.  ++++.|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4455666666665 3344443  477888888888887777778888888888888888888777778888888888888


Q ss_pred             CCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhh
Q 002350          640 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM  719 (933)
Q Consensus       640 ~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  719 (933)
                      +|++++..|..+..                                                                  
T Consensus        92 ~n~l~~~~~~~~~~------------------------------------------------------------------  105 (251)
T 3m19_A           92 NNQLASLPLGVFDH------------------------------------------------------------------  105 (251)
T ss_dssp             TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCcccccChhHhcc------------------------------------------------------------------
Confidence            88887554443332                                                                  


Q ss_pred             ccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcC
Q 002350          720 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ  799 (933)
Q Consensus       720 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~  799 (933)
                                 +++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|+++++|++|||++|++++..|..
T Consensus       106 -----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A          106 -----------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -----------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence                       346778899999998777777888999999999999999888888999999999999999999888888


Q ss_pred             CcCCCCCCeEEccCCcCcccCCC
Q 002350          800 LTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       800 l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      +..+++|++|++++|++++..+.
T Consensus       175 ~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          175 FDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             TTTCTTCCEEECCSCCBCTTSTT
T ss_pred             HhCCCCCCEEEeeCCceeCCccc
Confidence            99999999999999999887543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=6e-22  Score=214.50  Aligned_cols=80  Identities=26%  Similarity=0.357  Sum_probs=50.3

Q ss_pred             cccEEEcCCCcCCCCCChhhhhc---cccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeE
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQL---QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF  809 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  809 (933)
                      +|+.|||++|++++.+|..++.+   ++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..++.|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence            45556666666665555555554   46666667766666 4555553  5777777777777753 32 4566777777


Q ss_pred             EccCCcCc
Q 002350          810 NVSYNNLS  817 (933)
Q Consensus       810 ~ls~N~l~  817 (933)
                      ++++|+++
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            77777765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.4e-22  Score=219.51  Aligned_cols=249  Identities=18%  Similarity=0.228  Sum_probs=192.9

Q ss_pred             CCCEEEccCCcCCCCChhhHhhh--ccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccc-cCccc-cCCCCce
Q 002350          488 SLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEH  563 (933)
Q Consensus       488 ~L~~L~Ls~n~l~~~~p~~l~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~-~l~~L~~  563 (933)
                      .++.++++++.+.   +..+..+  .. ++.|++++|.+.+..+. +..+++|+.|++++|.+++. ++..+ .+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4677888887765   4455554  44 88888888888876655 55788999999999988765 55555 7889999


Q ss_pred             EEeecCcCcccCchhhccCCCccEEeCcCC-cCccc-CchhhhcCCCccEEEcCCC-cCCCC-CchhhhcCC-CCCEEEc
Q 002350          564 LSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGR-IPHQINEHSNLRFLLLGGN-HLQGP-IPDQLCQLQ-KLAMMDL  638 (933)
Q Consensus       564 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L  638 (933)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999988888888889999999999999 67753 6777889999999999999 88864 577788999 9999999


Q ss_pred             cCCc--CC-CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHH
Q 002350          639 SRNK--FS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI  715 (933)
Q Consensus       639 s~N~--l~-g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  715 (933)
                      ++|.  ++ +.+|..+.                                                               
T Consensus       203 ~~~~~~~~~~~l~~~~~---------------------------------------------------------------  219 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVR---------------------------------------------------------------  219 (336)
T ss_dssp             CSCGGGSCHHHHHHHHH---------------------------------------------------------------
T ss_pred             CCCcccCCHHHHHHHHh---------------------------------------------------------------
Confidence            9994  33 11121111                                                               


Q ss_pred             hhhhccceeeecCCCCCcccEEEcCCCc-CCCCCChhhhhccccCeeeccccc-cccccchhccCCCCCCEEECcCCeec
Q 002350          716 EFAMKNRYEIYNGSNVNRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLT  793 (933)
Q Consensus       716 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~  793 (933)
                                    .+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++
T Consensus       220 --------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          220 --------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             --------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             --------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence                          24578899999999 788888899999999999999995 33332336889999999999999 33


Q ss_pred             ccCCcCCcCC-CCCCeEEccCCcCcccCCC
Q 002350          794 GQIPPQLTAL-NFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       794 ~~ip~~l~~l-~~L~~L~ls~N~l~g~~p~  822 (933)
                      .   ..+..+ ..+..|++++|++++..|.
T Consensus       285 ~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          285 D---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             T---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             H---HHHHHHHhhCcceEEecccCccccCC
Confidence            2   234444 3477888999999998884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.2e-21  Score=214.97  Aligned_cols=197  Identities=19%  Similarity=0.215  Sum_probs=126.0

Q ss_pred             CCEEECcCCcCCCcCchhhccc--CcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCC-ChhhHhhhcccccee
Q 002350          441 LELLDLSNNNFEGQFFSEYMNL--TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH-IPHWMGNFSSELEIL  517 (933)
Q Consensus       441 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~~~~~L~~L  517 (933)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..++. |++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEE
Confidence            445555555443   2333334  5666666666666654443 44566777777777766544 5555555555 7777


Q ss_pred             ecCCCcCCCCcchhccCCCCCCEEEccCC-cCccc-cCccc-cCCCCceEEeecC-cCccc-CchhhccCC-CccEEeCc
Q 002350          518 SMSKNHLEGNVPVQLNNLERLRILDISEN-RLSGP-IASSL-NLSSVEHLSLQKN-ALNGL-IPGELFRSC-KLVTLNLR  591 (933)
Q Consensus       518 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~Ls  591 (933)
                      ++++|.+++..+..+..+++|++|++++| .+++. ++..+ .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77777776666666777777777777777 45542 33333 5667777777777 66543 455666777 77777777


Q ss_pred             CC--cCc-ccCchhhhcCCCccEEEcCCCc-CCCCCchhhhcCCCCCEEEccCCc
Q 002350          592 DN--TFS-GRIPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMDLSRNK  642 (933)
Q Consensus       592 ~N--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~  642 (933)
                      +|  .++ +.+|..+..+++|++|++++|. +++..+..+.++++|+.|++++|.
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            77  444 4456666777777777777777 665666677777777777777775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.6e-22  Score=226.57  Aligned_cols=248  Identities=18%  Similarity=0.233  Sum_probs=153.9

Q ss_pred             CChhhhhcCCCccEEEccCCCCCCCcc----ccccCCCCCCEEEcCCCcC---CCCcchhhhcCCCCCCEEECcCCcCCC
Q 002350          381 LPHNMGVILQKLMYMDISKNCFEGNIP----YSAGEMKELSLLDLSRNYF---SGGLSQSVVTGCFSLELLDLSNNNFEG  453 (933)
Q Consensus       381 ~p~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~~l~~L~~L~Ls~n~l~~  453 (933)
                      ++..+. .+++|++|++++|.+.+..+    ..+..+++|++|+|++|.+   .+.+|..+.                  
T Consensus        24 l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~------------------   84 (386)
T 2ca6_A           24 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR------------------   84 (386)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH------------------
T ss_pred             HHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH------------------
Confidence            344443 35666666666666654422    2344566666666666432   223333220                  


Q ss_pred             cCchhhcccCcCCeEEccCccccc----cccccccCCCCCCEEEccCCcCCCCChhhHhh----h---------ccccce
Q 002350          454 QFFSEYMNLTRLRHLYFENNNFSG----KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN----F---------SSELEI  516 (933)
Q Consensus       454 ~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~----~---------~~~L~~  516 (933)
                      .+...+..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+..    +         +. |++
T Consensus        85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-L~~  163 (386)
T 2ca6_A           85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-LRS  163 (386)
T ss_dssp             HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-CCE
T ss_pred             HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-CcE
Confidence            000112344555555555555544    24444555556666666666554322222222    2         33 777


Q ss_pred             eecCCCcCC-CCcc---hhccCCCCCCEEEccCCcCcc-----ccCccc-cCCCCceEEeecCcCc----ccCchhhccC
Q 002350          517 LSMSKNHLE-GNVP---VQLNNLERLRILDISENRLSG-----PIASSL-NLSSVEHLSLQKNALN----GLIPGELFRS  582 (933)
Q Consensus       517 L~L~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~-~l~~L~~L~L~~n~l~----~~~p~~~~~l  582 (933)
                      |++++|+++ +.++   ..+..+++|+.|++++|++..     ..+..+ .+++|++|+|++|.++    +.+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            777777765 2333   355667777778887777762     233233 6778888888888875    5677788888


Q ss_pred             CCccEEeCcCCcCccc----Cchhhhc--CCCccEEEcCCCcCCC----CCchhh-hcCCCCCEEEccCCcCCCCCC
Q 002350          583 CKLVTLNLRDNTFSGR----IPHQINE--HSNLRFLLLGGNHLQG----PIPDQL-CQLQKLAMMDLSRNKFSGSIP  648 (933)
Q Consensus       583 ~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~g~~p  648 (933)
                      ++|++|+|++|++++.    +|..+..  +++|++|+|++|++++    .+|..+ .++++|+.|++++|++++..|
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            9999999999998865    5666643  8899999999999987    477777 668999999999999987664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=212.06  Aligned_cols=223  Identities=22%  Similarity=0.296  Sum_probs=171.2

Q ss_pred             CCCEEEccCCcCccc----cCccccCCCCceEEeecCcCcccCchhh--ccCCCccEEeCcCCcCcccCc----hhhhcC
Q 002350          537 RLRILDISENRLSGP----IASSLNLSSVEHLSLQKNALNGLIPGEL--FRSCKLVTLNLRDNTFSGRIP----HQINEH  606 (933)
Q Consensus       537 ~L~~L~Ls~n~l~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l  606 (933)
                      .++.+.+.++.+...    +.....+++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            355666666655421    1112245668888888888888888777  778888899999988887555    344578


Q ss_pred             CCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCC--CCchhhhhhccccCCCCccCCCCCCCCCccchhhcccC
Q 002350          607 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS--IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL  684 (933)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (933)
                      ++|++|+|++|++++..|..+..+++|++|++++|++.+.  ++...                                 
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------  191 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---------------------------------  191 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---------------------------------
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH---------------------------------
Confidence            8999999999999988888999999999999999997632  10000                                 


Q ss_pred             CCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCCh----hhhhccccCe
Q 002350          685 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS----DIGQLQAILA  760 (933)
Q Consensus       685 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~  760 (933)
                                                                ....+++|+.|+|++|+++ .+|.    .++.+++|++
T Consensus       192 ------------------------------------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~  228 (310)
T 4glp_A          192 ------------------------------------------CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS  228 (310)
T ss_dssp             ------------------------------------------CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS
T ss_pred             ------------------------------------------hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE
Confidence                                                      0012457888999999997 3343    2578899999


Q ss_pred             eeccccccccccchhccCC---CCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCccCcccccCC
Q 002350          761 LNLSNNSLSGSIPESFSNL---KMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGN  837 (933)
Q Consensus       761 L~Ls~N~l~~~~p~~~~~l---~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN  837 (933)
                      |+|++|++++.+|..++.+   ++|++|+|++|+++ .+|..+.  ++|+.||+++|++++. |....+..+....+.||
T Consensus       229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred             EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence            9999999999989888887   69999999999999 7888775  8999999999999984 44456677777788888


Q ss_pred             CC
Q 002350          838 PS  839 (933)
Q Consensus       838 ~~  839 (933)
                      +.
T Consensus       305 ~l  306 (310)
T 4glp_A          305 PF  306 (310)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=7.3e-21  Score=197.64  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=42.3

Q ss_pred             ccc-EEEcCCCcCCCCCChhhhhccccCeeeccccc-cccccchhccCC-CCCCEEECcCCeecccCCcCCcCCCCCCeE
Q 002350          733 RVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNL-KMIESLDISYNKLTGQIPPQLTALNFLSIF  809 (933)
Q Consensus       733 ~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  809 (933)
                      +|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+++ ++|+.||+++|++++ +|..  .++.|+.|
T Consensus       156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence            344 5555555555 333332222556666666663 665555556666 666666666666663 3332  45556666


Q ss_pred             EccCC
Q 002350          810 NVSYN  814 (933)
Q Consensus       810 ~ls~N  814 (933)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            66554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1e-20  Score=204.20  Aligned_cols=193  Identities=19%  Similarity=0.323  Sum_probs=110.6

Q ss_pred             CCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEE
Q 002350          534 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL  613 (933)
Q Consensus       534 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  613 (933)
                      .+++|+.|++++|.+... +....+++|++|++++|.+.+..+  +..+++|++|++++|++++ ++ .+..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            445555555555555432 222255556666666665554332  5566666666666666653 22 455666666666


Q ss_pred             cCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccc
Q 002350          614 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM  693 (933)
Q Consensus       614 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (933)
                      +++|++++. +. +..+++|+.|++++|++++..+  +.                                         
T Consensus       114 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~-----------------------------------------  148 (308)
T 1h6u_A          114 LTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LA-----------------------------------------  148 (308)
T ss_dssp             CTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GG-----------------------------------------
T ss_pred             CCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--cc-----------------------------------------
Confidence            666666642 22 6666666666666666653221  11                                         


Q ss_pred             cchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc
Q 002350          694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP  773 (933)
Q Consensus       694 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p  773 (933)
                                                          .+++|+.|++++|++++ +|. +..+++|+.|++++|++++..+
T Consensus       149 ------------------------------------~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          149 ------------------------------------GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             ------------------------------------GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ------------------------------------CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh
Confidence                                                12345566666666664 332 6666666666666666665433


Q ss_pred             hhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350          774 ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  818 (933)
Q Consensus       774 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  818 (933)
                        +..+++|++|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       191 --l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             --hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence              6666666666666666664432  5666666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=4.4e-20  Score=193.14  Aligned_cols=181  Identities=21%  Similarity=0.236  Sum_probs=146.7

Q ss_pred             CCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC
Q 002350          537 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG  616 (933)
Q Consensus       537 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  616 (933)
                      ..+.++++++.++...+. + .+.++.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|+|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-I-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-C-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCC-C-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            455666666666543322 2 25677778888888777777888888899999999998888888888889999999999


Q ss_pred             CcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccch
Q 002350          617 NHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM  696 (933)
Q Consensus       617 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (933)
                      |++++..+..|..+++|++|++++|++++..+..+..                                           
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------  129 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-------------------------------------------  129 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence            9999877788889999999999999988554443332                                           


Q ss_pred             hhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhc
Q 002350          697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF  776 (933)
Q Consensus       697 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~  776 (933)
                                                        +++|+.|+|++|++++..|..++.+++|++|+|++|++++..|..|
T Consensus       130 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          130 ----------------------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------------------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence                                              3467889999999997777789999999999999999998888899


Q ss_pred             cCCCCCCEEECcCCeecccC
Q 002350          777 SNLKMIESLDISYNKLTGQI  796 (933)
Q Consensus       777 ~~l~~L~~LdLs~N~l~~~i  796 (933)
                      .++++|+.|+|++|.+++..
T Consensus       176 ~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          176 DRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTCTTCCEEECCSCCBCTTS
T ss_pred             hCCCCCCEEEeeCCceeCCc
Confidence            99999999999999998653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.3e-20  Score=199.31  Aligned_cols=189  Identities=22%  Similarity=0.351  Sum_probs=134.2

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      |+.|++++|.++. ++ .+..+++|+.|++++|++.+..+ ...+++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus        43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST  117 (308)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTS
T ss_pred             cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCC
Confidence            6666666665553 23 35556666666666666655444 23666677777777766643  35777788888888888


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  673 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~  673 (933)
                      ++++. + .+..+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +.                     
T Consensus       118 ~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~---------------------  170 (308)
T 1h6u_A          118 QITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA---------------------  170 (308)
T ss_dssp             CCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT---------------------
T ss_pred             CCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc---------------------
Confidence            88753 3 37788888888888888876443  7788888888888888874222  21                     


Q ss_pred             CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350          674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  753 (933)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  753 (933)
                                                                              .+++|+.|++++|++++..|  +.
T Consensus       171 --------------------------------------------------------~l~~L~~L~l~~n~l~~~~~--l~  192 (308)
T 1h6u_A          171 --------------------------------------------------------NLSKLTTLKADDNKISDISP--LA  192 (308)
T ss_dssp             --------------------------------------------------------TCTTCCEEECCSSCCCCCGG--GG
T ss_pred             --------------------------------------------------------CCCCCCEEECCCCccCcChh--hc
Confidence                                                                    23467788888888885433  78


Q ss_pred             hccccCeeeccccccccccchhccCCCCCCEEECcCCeecc
Q 002350          754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG  794 (933)
Q Consensus       754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~  794 (933)
                      .+++|+.|+|++|++++..|  +..+++|+.|+|++|++++
T Consensus       193 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            88899999999999986654  8889999999999999974

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=9.4e-21  Score=196.78  Aligned_cols=201  Identities=16%  Similarity=0.173  Sum_probs=160.9

Q ss_pred             CCCCceEEeecCcCcccCchhhccCCCccEEeCcCCc-CcccCchhhhcCCCccEEEcCC-CcCCCCCchhhhcCCCCCE
Q 002350          558 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLLGG-NHLQGPIPDQLCQLQKLAM  635 (933)
Q Consensus       558 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~  635 (933)
                      .+++++|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|+.
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3478888888888887777788888999999999997 8766667888899999999998 8998777788899999999


Q ss_pred             EEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHH
Q 002350          636 MDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI  715 (933)
Q Consensus       636 L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  715 (933)
                      |++++|++++ +|. +..+.                                                            
T Consensus       110 L~l~~n~l~~-lp~-~~~l~------------------------------------------------------------  127 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVY------------------------------------------------------------  127 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCC------------------------------------------------------------
T ss_pred             EeCCCCCCcc-ccc-ccccc------------------------------------------------------------
Confidence            9999999885 554 43321                                                            


Q ss_pred             hhhhccceeeecCCCCCcccEEEcCCC-cCCCCCChhhhhccccC-eeeccccccccccchhccCCCCCCEEECcCCe-e
Q 002350          716 EFAMKNRYEIYNGSNVNRVTGLDLSCN-QLTGEIPSDIGQLQAIL-ALNLSNNSLSGSIPESFSNLKMIESLDISYNK-L  792 (933)
Q Consensus       716 ~~~~~~~~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~-l  792 (933)
                                    .+..|+.|++++| ++++..+..|..+++|+ .|++++|+++...+..|.. ++|+.|+|++|+ +
T Consensus       128 --------------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          128 --------------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYL  192 (239)
T ss_dssp             --------------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTC
T ss_pred             --------------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCc
Confidence                          1123458999999 99977777899999999 9999999999444445555 899999999995 9


Q ss_pred             cccCCcCCcCC-CCCCeEEccCCcCcccCCCCCcCCccCcccccCC
Q 002350          793 TGQIPPQLTAL-NFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGN  837 (933)
Q Consensus       793 ~~~ip~~l~~l-~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gN  837 (933)
                      ++..+..+..+ ++|+.||+++|++++..+ . .|..+....+.++
T Consensus       193 ~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K-GLEHLKELIARNT  236 (239)
T ss_dssp             CEECTTTTTTCSBCCSEEECTTCCCCCCCC-T-TCTTCSEEECTTC
T ss_pred             ccCCHHHhhccccCCcEEECCCCccccCCh-h-HhccCceeeccCc
Confidence            98888889999 999999999999986443 3 4555555554444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=6.9e-20  Score=185.76  Aligned_cols=136  Identities=29%  Similarity=0.293  Sum_probs=107.1

Q ss_pred             CCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCC
Q 002350          116 LEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKN  195 (933)
Q Consensus       116 l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~  195 (933)
                      .++|++|++++|.+.+..+    ..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPN----GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQ  101 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             CCCCcEEEcCCCccCcCCh----hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccC
Confidence            4578899999988875444    567888888888888888887777777888888888888888876544 55778888


Q ss_pred             CCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCC
Q 002350          196 LFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG  256 (933)
Q Consensus       196 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  256 (933)
                      |++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            8888888888887666677888888888888888886666667788888888888887654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.6e-19  Score=208.93  Aligned_cols=113  Identities=22%  Similarity=0.388  Sum_probs=51.7

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      ++.|++++|.+++ +|..+  .++|+.|++++|+++ .+|  -.+++|++|++++|++++ +|. +..  +|++|++++|
T Consensus        61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred             ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence            5555555555553 33333  144555555555554 222  123445555555555544 333 322  4555555555


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      ++++ +|.   .+++|+.|+|++|++++ +|.   .+++|+.|++++|+++
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            5543 333   34445555555555443 332   2344455555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.9e-19  Score=194.94  Aligned_cols=239  Identities=16%  Similarity=0.146  Sum_probs=167.1

Q ss_pred             CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCc-cc-cCCCCce-EEe
Q 002350          490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS-SL-NLSSVEH-LSL  566 (933)
Q Consensus       490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~-~l~~L~~-L~L  566 (933)
                      ++++.++++++ .+|..+   +.++++|+|++|+++...+.+|.++++|++|+|++|++.+.++. .+ +++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45667777776 666544   34488888888888855556788888888888888888765554 44 6777665 556


Q ss_pred             ecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCC-CcCCCCCchhhhcCC-CCCEEEccCCcCC
Q 002350          567 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG-NHLQGPIPDQLCQLQ-KLAMMDLSRNKFS  644 (933)
Q Consensus       567 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~  644 (933)
                      ..|++++..|..|..+++|++|++++|++++..+..+....++..|++.+ +++....+..|..+. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            67888888788888888888999988888876666666667778888855 566655555666664 5788899988887


Q ss_pred             CCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhcccee
Q 002350          645 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE  724 (933)
Q Consensus       645 g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  724 (933)
                      . +|.....                                                                       
T Consensus       168 ~-i~~~~f~-----------------------------------------------------------------------  175 (350)
T 4ay9_X          168 E-IHNSAFN-----------------------------------------------------------------------  175 (350)
T ss_dssp             E-ECTTSST-----------------------------------------------------------------------
T ss_pred             C-CChhhcc-----------------------------------------------------------------------
Confidence            3 3322111                                                                       


Q ss_pred             eecCCCCCcccEEEcCC-CcCCCCCC-hhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcC
Q 002350          725 IYNGSNVNRVTGLDLSC-NQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA  802 (933)
Q Consensus       725 ~~~~~~l~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  802 (933)
                            ..+++.|++++ |.++ .+| ..|+.+++|++|||++|+|+...+..|.   +|+.|.+.++.--..+| .+..
T Consensus       176 ------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~  244 (350)
T 4ay9_X          176 ------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEK  244 (350)
T ss_dssp             ------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTT
T ss_pred             ------ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cchh
Confidence                  12466788875 5555 555 4578889999999999999865554444   45555554444344677 4788


Q ss_pred             CCCCCeEEccCCc
Q 002350          803 LNFLSIFNVSYNN  815 (933)
Q Consensus       803 l~~L~~L~ls~N~  815 (933)
                      +++|+.++++++.
T Consensus       245 l~~L~~l~l~~~~  257 (350)
T 4ay9_X          245 LVALMEASLTYPS  257 (350)
T ss_dssp             CCSCCEEECSCHH
T ss_pred             CcChhhCcCCCCc
Confidence            8889999988763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=3.9e-19  Score=180.22  Aligned_cols=86  Identities=26%  Similarity=0.286  Sum_probs=36.9

Q ss_pred             CCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEc
Q 002350          559 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL  638 (933)
Q Consensus       559 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  638 (933)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            33333333333333333333344444444444444444333333444444444444444444433333444444444444


Q ss_pred             cCCcCC
Q 002350          639 SRNKFS  644 (933)
Q Consensus       639 s~N~l~  644 (933)
                      ++|+++
T Consensus       132 ~~N~l~  137 (208)
T 2o6s_A          132 YQNQLK  137 (208)
T ss_dssp             CSSCCS
T ss_pred             CCCccc
Confidence            444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.6e-18  Score=190.80  Aligned_cols=241  Identities=15%  Similarity=0.101  Sum_probs=148.4

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCE-EEC
Q 002350          368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL-LDL  446 (933)
Q Consensus       368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L  446 (933)
                      ++++.++++++ ++|..+   .+++++|+|++|.++...+.+|.++++|++|+|++|++.+.++...|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 666654   3567777777777764434456667777777777776665566555555555443 344


Q ss_pred             cCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCC-CcCC
Q 002350          447 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK-NHLE  525 (933)
Q Consensus       447 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~-n~l~  525 (933)
                      ..|++....+..|..+++|++|++++|+++...+..+....+                         +..+++.+ +++.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-------------------------l~~l~l~~~~~i~  142 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-------------------------KVLLDIQDNINIH  142 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS-------------------------CEEEEEESCTTCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccch-------------------------hhhhhhccccccc
Confidence            445555544445555555555555555554333333333333                         44444433 3344


Q ss_pred             CCcchhccCCC-CCCEEEccCCcCccccCccccCCCCceEEeec-CcCcccCchhhccCCCccEEeCcCCcCcccCchhh
Q 002350          526 GNVPVQLNNLE-RLRILDISENRLSGPIASSLNLSSVEHLSLQK-NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI  603 (933)
Q Consensus       526 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  603 (933)
                      ...+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++.+.+..|..+++|++||+++|+++...+.. 
T Consensus       143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-  221 (350)
T 4ay9_X          143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-  221 (350)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-
T ss_pred             cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-
Confidence            33334455543 57778888888877666666667788888875 4555444456788899999999999998543333 


Q ss_pred             hcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350          604 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  641 (933)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  641 (933)
                        +.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus       222 --~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 --LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             --CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             --hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence              4566777766655445677 4888999999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=177.45  Aligned_cols=156  Identities=21%  Similarity=0.260  Sum_probs=123.8

Q ss_pred             cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCc-hhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350          586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  664 (933)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~  664 (933)
                      +.+++++|.++ .+|..+.  ..+++|+|++|++++..| ..|..+++|+.|++++|++++..|..|.+           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46777777766 3555443  345777777777776544 44777888888888888877554444432           


Q ss_pred             cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350          665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  744 (933)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  744 (933)
                                                                                        +++|+.|+|++|++
T Consensus        80 ------------------------------------------------------------------l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           80 ------------------------------------------------------------------ASGVNEILLTSNRL   93 (220)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------CCCCCEEECCCCcc
Confidence                                                                              33577788888888


Q ss_pred             CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      ++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|+++|.++
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            87777788899999999999999999889999999999999999999999999999999999999999999998776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.7e-18  Score=200.22  Aligned_cols=186  Identities=26%  Similarity=0.355  Sum_probs=98.0

Q ss_pred             CCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEc
Q 002350          415 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI  494 (933)
Q Consensus       415 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  494 (933)
                      +++.|++++|.+++ +|..++   ++|++|++++|.++. +|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            67777777777663 555432   556666666666662 33   235666666666666664 444 333  5666666


Q ss_pred             cCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCccc
Q 002350          495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL  574 (933)
Q Consensus       495 s~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~  574 (933)
                      ++|++++ +|.   .++. |+.|++++|++++ +|.   .+++|+.|++++|++++ +|. +. ++|+.|+|++|+++ .
T Consensus       128 s~N~l~~-lp~---~l~~-L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPAL-LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCcc-ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-c
Confidence            6666653 444   2223 6666666666554 333   34555555555555554 333 32 55555555555555 3


Q ss_pred             CchhhccCCCc-------cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350          575 IPGELFRSCKL-------VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  629 (933)
Q Consensus       575 ~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  629 (933)
                      +|. +..  +|       +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            333 322  34       55555555555 34444444555555555555555555544444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2.6e-18  Score=175.37  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=115.9

Q ss_pred             cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCcc
Q 002350          586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL  665 (933)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~  665 (933)
                      +.++++++.++ .+|..+.  ++|++|++++|++++..+..|..+++|+.|++++|++++..|..|.+            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            45666666665 4454443  46777777777777666666777777777777777776555554433            


Q ss_pred             CCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCC
Q 002350          666 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT  745 (933)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  745 (933)
                                                                                       +++|+.|||++|+++
T Consensus        79 -----------------------------------------------------------------l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           79 -----------------------------------------------------------------LRSLNSLVLYGNKIT   93 (220)
T ss_dssp             -----------------------------------------------------------------CSSCCEEECCSSCCC
T ss_pred             -----------------------------------------------------------------CcCCCEEECCCCcCC
Confidence                                                                             235666778888877


Q ss_pred             CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCC
Q 002350          746 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       746 g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      +..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++.+.++
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            5555557788888899999999988888889999999999999999998888888889999999999998877554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.6e-17  Score=170.65  Aligned_cols=160  Identities=24%  Similarity=0.195  Sum_probs=134.9

Q ss_pred             CCCcccceeEecCCCCcEEEEecCCCCCCCCCCCCcccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCE
Q 002350           70 SDCCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKI  149 (933)
Q Consensus        70 ~~~C~w~gv~c~~~~~~V~~l~l~~~~~l~l~~~~~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~  149 (933)
                      .+.|+|++|.|....  +                  ..++..   -.++|++|+|++|.+.+..+    ..+..+++|++
T Consensus        16 ~~~Cs~~~v~c~~~~--l------------------~~ip~~---~~~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~   68 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKR--H------------------ASVPAG---IPTNAQILYLHDNQITKLEP----GVFDSLINLKE   68 (229)
T ss_dssp             TCEEETTEEECTTSC--C------------------SSCCSC---CCTTCSEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred             CCEEeCCEeEccCCC--c------------------CccCCC---CCCCCCEEEcCCCccCccCH----HHhhCccCCcE
Confidence            568999999997421  0                  112111   13789999999999988666    77899999999


Q ss_pred             EeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCc
Q 002350          150 LVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ  229 (933)
Q Consensus       150 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  229 (933)
                      |+|++|.++...+..+..+++|++|+|++|++++..+ ..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|+
T Consensus        69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred             EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence            9999999987777888999999999999999987655 56889999999999999998 478889999999999999999


Q ss_pred             CCCCCchhccCCCCCCEEECCCCcCCCCC
Q 002350          230 LNGSLPSVISNLTSLEYLDLSHNNFEGMF  258 (933)
Q Consensus       230 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  258 (933)
                      +++..+..+..+++|++|++++|.+....
T Consensus       147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          147 LKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99777778999999999999999987654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.9e-17  Score=168.93  Aligned_cols=138  Identities=21%  Similarity=0.242  Sum_probs=125.9

Q ss_pred             CCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCC
Q 002350          117 EELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNL  196 (933)
Q Consensus       117 ~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  196 (933)
                      ++|++|+|++|.+.+..+    ..+..+++|++|+|++|.+++..|..|.++++|++|+|++|+++...+ ..+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP----GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECT----TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCH----hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCC
Confidence            689999999999987655    678999999999999999998889999999999999999999996554 668899999


Q ss_pred             CEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCC
Q 002350          197 FEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP  259 (933)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  259 (933)
                      ++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+...-.
T Consensus       107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            999999999999889999999999999999999998888889999999999999999876544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.3e-17  Score=171.36  Aligned_cols=157  Identities=22%  Similarity=0.258  Sum_probs=124.9

Q ss_pred             ccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350          585 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  664 (933)
Q Consensus       585 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~  664 (933)
                      -+.++.+++.++ .+|..+.  ++|++|+|++|++++..|..|..+++|+.|++++|++++..+..|..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            456777777776 5565443  67888888888888777888888888888888888886433333322           


Q ss_pred             cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350          665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  744 (933)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  744 (933)
                                                                                        +++|+.|||++|++
T Consensus        87 ------------------------------------------------------------------l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           87 ------------------------------------------------------------------LTQLTVLDLGTNQL  100 (229)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------CCCcCEEECCCCcC
Confidence                                                                              34677788888888


Q ss_pred             CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCC
Q 002350          745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      ++..+..+..+++|+.|+|++|+++ .+|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            8777777888999999999999999 7888899999999999999999987778899999999999999999887763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=6.6e-18  Score=180.44  Aligned_cols=122  Identities=21%  Similarity=0.254  Sum_probs=63.0

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      +..+.+..+.+++..+  +..+++|+.|++++|.+... +....+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            3444555555553322  33556666777766666533 222245555555555555554332  555555555555555


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      ++++ + ..+..+++|++|++++|++++.  +.+..+++|+.|++++|+++
T Consensus       101 ~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A          101 KVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             CCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             cCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence            5553 2 2255555555555555555532  23455555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.1e-17  Score=176.56  Aligned_cols=189  Identities=19%  Similarity=0.326  Sum_probs=156.5

Q ss_pred             CCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCC
Q 002350          538 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN  617 (933)
Q Consensus       538 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  617 (933)
                      +..+.+..+.+.+..+. -.+++|++|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEECH-HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCcccccch-hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            33445556655543221 2688999999999999865 3 58889999999999999997544  899999999999999


Q ss_pred             cCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchh
Q 002350          618 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW  697 (933)
Q Consensus       618 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (933)
                      ++++ +| .+..+++|+.|++++|++++. + .+.                                             
T Consensus       101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~l~---------------------------------------------  131 (291)
T 1h6t_A          101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLV---------------------------------------------  131 (291)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GGG---------------------------------------------
T ss_pred             cCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-hhc---------------------------------------------
Confidence            9986 34 499999999999999999852 2 121                                             


Q ss_pred             hhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhcc
Q 002350          698 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS  777 (933)
Q Consensus       698 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  777 (933)
                                                      .+++|+.|++++|++++.  ..++.+++|+.|+|++|++++..|  ++
T Consensus       132 --------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~  175 (291)
T 1h6t_A          132 --------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  175 (291)
T ss_dssp             --------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             --------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence                                            235788899999999964  679999999999999999998766  99


Q ss_pred             CCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350          778 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  818 (933)
Q Consensus       778 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  818 (933)
                      .+++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus       176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            99999999999999996 45 48999999999999999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=3.3e-18  Score=189.09  Aligned_cols=87  Identities=23%  Similarity=0.143  Sum_probs=46.9

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhc---cCCCCCCEEECcCCeecccCCcCCcCCCC--CC
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF---SNLKMIESLDISYNKLTGQIPPQLTALNF--LS  807 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~~~ip~~l~~l~~--L~  807 (933)
                      +|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|   .++++|+.|||++|+|++..+..+..++.  ++
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            44455555555555555555555566666666666654433333   44566666666666666444444555554  25


Q ss_pred             eEEccCCcCccc
Q 002350          808 IFNVSYNNLSGR  819 (933)
Q Consensus       808 ~L~ls~N~l~g~  819 (933)
                      .|++++|++.+.
T Consensus       193 ~l~l~~N~~~C~  204 (361)
T 2xot_A          193 GLYLHNNPLECD  204 (361)
T ss_dssp             TEECCSSCEECC
T ss_pred             eEEecCCCccCC
Confidence            566666666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=4e-18  Score=188.43  Aligned_cols=180  Identities=22%  Similarity=0.223  Sum_probs=134.8

Q ss_pred             cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhh-cCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350          586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  664 (933)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~  664 (933)
                      +.++++++.++ .+|..+.  +.++.|+|++|++++..+..+. ++++|+.|+|++|++++..|..|.+           
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   86 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-----------   86 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence            46677777766 3555443  3577777777777766666666 7788888888888877544443332           


Q ss_pred             cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350          665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  744 (933)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  744 (933)
                                                                                        +++|+.|||++|++
T Consensus        87 ------------------------------------------------------------------l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           87 ------------------------------------------------------------------VPNLRYLDLSSNHL  100 (361)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------CCCCCEEECCCCcC
Confidence                                                                              34677788888888


Q ss_pred             CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCC---cCCCCCCeEEccCCcCcccCC
Q 002350          745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQL---TALNFLSIFNVSYNNLSGRTP  821 (933)
Q Consensus       745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~ls~N~l~g~~p  821 (933)
                      ++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..+   ..+++|+.|||++|+|++..+
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            87777789999999999999999999999999999999999999999996544445   679999999999999986543


Q ss_pred             CC-CcCCc--cCcccccCCCCCCCccc
Q 002350          822 DK-GQFAT--FDESSYRGNPSLCAWLI  845 (933)
Q Consensus       822 ~~-~~~~~--~~~~~~~gN~~lc~~~l  845 (933)
                      .. ..+..  +....+.|||+.|+|.+
T Consensus       181 ~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          181 TDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             HHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             HHhhhccHhhcceEEecCCCccCCcCc
Confidence            21 11222  24567899999998753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.2e-17  Score=193.30  Aligned_cols=190  Identities=21%  Similarity=0.296  Sum_probs=103.1

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN  593 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  593 (933)
                      +..+.+..+.+.+..+  +..+++|+.|++++|.+... +....+++|+.|+|++|.+.+..|  +..+++|+.|+|++|
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            3334444444443222  23444555555555554432 222245555555555555554433  555666666666666


Q ss_pred             cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCC
Q 002350          594 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP  673 (933)
Q Consensus       594 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~  673 (933)
                      .+++ +| .+..+++|+.|+|++|++.+.  +.+..+++|+.|+|++|++++.  ..+.                     
T Consensus        98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~---------------------  150 (605)
T 1m9s_A           98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS---------------------  150 (605)
T ss_dssp             CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG---------------------
T ss_pred             CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc---------------------
Confidence            6653 22 455666666666666666642  3456666666666666666532  1111                     


Q ss_pred             CccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhh
Q 002350          674 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG  753 (933)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  753 (933)
                                                                              .+++|+.|+|++|++++..|  +.
T Consensus       151 --------------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--l~  172 (605)
T 1m9s_A          151 --------------------------------------------------------RLTKLDTLSLEDNQISDIVP--LA  172 (605)
T ss_dssp             --------------------------------------------------------SCTTCSEEECCSSCCCCCGG--GT
T ss_pred             --------------------------------------------------------ccCCCCEEECcCCcCCCchh--hc
Confidence                                                                    12355566666666665444  66


Q ss_pred             hccccCeeeccccccccccchhccCCCCCCEEECcCCeeccc
Q 002350          754 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ  795 (933)
Q Consensus       754 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  795 (933)
                      .+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++.
T Consensus       173 ~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            666666666666666643 2 466666666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2e-19  Score=209.36  Aligned_cols=77  Identities=22%  Similarity=0.171  Sum_probs=46.7

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeecccccccccc-chhccCCCCCCEEECcCCeecccCCcC---CcCCCCCCe
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIPPQ---LTALNFLSI  808 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~  808 (933)
                      +|+.|||++|++++ +| .++.+++|+.|+|++|+|++.+ |..|+++++|+.|+|++|++++.+|..   +..+++|++
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            44556666666664 45 5666666666666666666655 666666666666677666666554422   123566666


Q ss_pred             EEc
Q 002350          809 FNV  811 (933)
Q Consensus       809 L~l  811 (933)
                      ||+
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=3.4e-17  Score=167.05  Aligned_cols=155  Identities=23%  Similarity=0.258  Sum_probs=127.1

Q ss_pred             CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcc-hhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee
Q 002350          490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ  567 (933)
Q Consensus       490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~  567 (933)
                      +++++++|.++ .+|..+.   ..++.|++++|++++..+ ..|..+++|+.|++++|++++..+..+ .+++|++|+|+
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            46666666665 4554332   236777777777776543 457788888888888888888777666 78889999999


Q ss_pred             cCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCC
Q 002350          568 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI  647 (933)
Q Consensus       568 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~  647 (933)
                      +|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99998888888999999999999999999888999999999999999999999888999999999999999999998765


Q ss_pred             C
Q 002350          648 P  648 (933)
Q Consensus       648 p  648 (933)
                      +
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.7e-17  Score=165.52  Aligned_cols=113  Identities=22%  Similarity=0.285  Sum_probs=91.9

Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  811 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  811 (933)
                      ++|+.|||++|++++.+|..|+.+++|++|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            46777888888888888888999999999999999999988888999999999999999999999999999999999999


Q ss_pred             cCCcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350          812 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       812 s~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~  844 (933)
                      ++|+++|.+|.......+....+.++...|+.|
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999999887732111112223455666677665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=7.2e-17  Score=188.97  Aligned_cols=188  Identities=23%  Similarity=0.363  Sum_probs=135.3

Q ss_pred             EECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCc
Q 002350          444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH  523 (933)
Q Consensus       444 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~  523 (933)
                      +.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..|  +..++. |+.|+|++|.
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~   98 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKN-LGWLFLDENK   98 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTT-CCEEECCSSC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCC-CCEEECcCCC
Confidence            3444444443322  3456667777777776653 23 46667777777777777764333  556655 7777777777


Q ss_pred             CCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhh
Q 002350          524 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI  603 (933)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  603 (933)
                      +.+ ++ .+..+++|+.|+|++|++.+. +....+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|  +
T Consensus        99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A           99 IKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             CCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence            764 23 577788888888888888763 4344788888888888888765  577888899999999999887665  8


Q ss_pred             hcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCC
Q 002350          604 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI  647 (933)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~  647 (933)
                      ..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++..
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            8889999999999998864  35888899999999999887543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.4e-19  Score=210.75  Aligned_cols=141  Identities=16%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             cCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCc-------------CCCCcchhccCCCCCCEEE-ccCCcCc
Q 002350          484 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH-------------LEGNVPVQLNNLERLRILD-ISENRLS  549 (933)
Q Consensus       484 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~  549 (933)
                      ..++.|+.|++++|+++ .+|..++.+.. |+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence            55778888889888886 78888888877 8888887664             2333344444444444444 333322 


Q ss_pred             cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350          550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  629 (933)
Q Consensus       550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  629 (933)
                               ..|+.+.+++|.+....+      ..|+.|++++|++++ +|. ++.+++|+.|+|++|+++ .+|..+++
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     123333334444332211      124555555555553 343 555555555555555555 44555555


Q ss_pred             CCCCCEEEccCCcCCC
Q 002350          630 LQKLAMMDLSRNKFSG  645 (933)
Q Consensus       630 l~~L~~L~Ls~N~l~g  645 (933)
                      +++|+.|+|++|++++
T Consensus       485 l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          485 LRCLEVLQASDNALEN  500 (567)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            5555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=5.6e-17  Score=162.58  Aligned_cols=155  Identities=17%  Similarity=0.246  Sum_probs=101.6

Q ss_pred             ccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhcccc
Q 002350          580 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV  659 (933)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~  659 (933)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..++.      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            34456666666666666 344 4666666777777766554  2335666777777777777776544443322      


Q ss_pred             CCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEc
Q 002350          660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL  739 (933)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  739 (933)
                                                                                             +++|+.|++
T Consensus       111 -----------------------------------------------------------------------l~~L~~L~L  119 (197)
T 4ezg_A          111 -----------------------------------------------------------------------LTSLTLLDI  119 (197)
T ss_dssp             -----------------------------------------------------------------------CTTCCEEEC
T ss_pred             -----------------------------------------------------------------------CCCCCEEEe
Confidence                                                                                   235666777


Q ss_pred             CCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350          740 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  818 (933)
Q Consensus       740 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  818 (933)
                      ++|++++..|..++.+++|+.|+|++|.+.+.+| .++++++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            7777777677777778888888888887333455 57788888888888888875 33 67778888888888887653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=8.9e-18  Score=201.90  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=84.7

Q ss_pred             CCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCc
Q 002350          521 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP  600 (933)
Q Consensus       521 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  600 (933)
                      .|.+. ..+..+..++.|+.|+|++|++....+..+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|
T Consensus       210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp  286 (727)
T 4b8c_D          210 ENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP  286 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred             cccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence            34443 4566677777888888888877744444447777777777777777 56777777777777777777777 567


Q ss_pred             hhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhh
Q 002350          601 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN  653 (933)
Q Consensus       601 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~  653 (933)
                      ..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|+++|.+|..+..
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            77777777777777777776 56666777777777777777777766665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.7e-17  Score=170.94  Aligned_cols=171  Identities=20%  Similarity=0.277  Sum_probs=132.5

Q ss_pred             cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEE
Q 002350          557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM  636 (933)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  636 (933)
                      .+..+..+++++|.+++..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+  +.++++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3455666677777776442  5677788888888888887 345 67888888888888888886544  8888888899


Q ss_pred             EccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHh
Q 002350          637 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE  716 (933)
Q Consensus       637 ~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  716 (933)
                      ++++|++++ +|..                                                                  
T Consensus        91 ~L~~N~l~~-l~~~------------------------------------------------------------------  103 (263)
T 1xeu_A           91 SVNRNRLKN-LNGI------------------------------------------------------------------  103 (263)
T ss_dssp             ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred             ECCCCccCC-cCcc------------------------------------------------------------------
Confidence            998888874 2210                                                                  


Q ss_pred             hhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccC
Q 002350          717 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  796 (933)
Q Consensus       717 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i  796 (933)
                                  .. ++|+.|+|++|++++ +| .++.+++|+.|+|++|++++. | .++++++|+.|+|++|++++. 
T Consensus       104 ------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A          104 ------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             ------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             ------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence                        00 357789999999885 34 588889999999999999865 4 688899999999999999876 


Q ss_pred             CcCCcCCCCCCeEEccCCcCccc
Q 002350          797 PPQLTALNFLSIFNVSYNNLSGR  819 (933)
Q Consensus       797 p~~l~~l~~L~~L~ls~N~l~g~  819 (933)
                       ..+..+++|+.|++++|++++.
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             6788889999999999988765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=2.4e-17  Score=198.25  Aligned_cols=227  Identities=21%  Similarity=0.217  Sum_probs=127.1

Q ss_pred             CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEE
Q 002350          487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLS  565 (933)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~  565 (933)
                      +.++.|++.+|.+.. .+..     . ++.++|+.|.+.+              ++++.|++. ..+..+ .++.|+.|+
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~-----~-l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA-----L-LQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CccceEEeeCCCCCc-chhh-----H-hhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEE
Confidence            456677777776653 2222     1 5566666665542              344455554 344455 899999999


Q ss_pred             eecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCC
Q 002350          566 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG  645 (933)
Q Consensus       566 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  645 (933)
                      |++|.+. .+|..++.+++|++|+|++|.++ .+|..|+.+++|++|+|++|+++ .+|..|.++++|++|+|++|.++ 
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence            9999998 67778889999999999999999 88999999999999999999999 78999999999999999999997 


Q ss_pred             CCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceee
Q 002350          646 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI  725 (933)
Q Consensus       646 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  725 (933)
                      .+|..|+++                                                                       
T Consensus       307 ~lp~~~~~l-----------------------------------------------------------------------  315 (727)
T 4b8c_D          307 TLPWEFGNL-----------------------------------------------------------------------  315 (727)
T ss_dssp             CCCSSTTSC-----------------------------------------------------------------------
T ss_pred             ccChhhhcC-----------------------------------------------------------------------
Confidence            777765543                                                                       


Q ss_pred             ecCCCCCcccEEEcCCCcCCCCCChhhhhccc-cCeeeccccccccccchhccCCCCCCEEECcCC--------eecccC
Q 002350          726 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA-ILALNLSNNSLSGSIPESFSNLKMIESLDISYN--------KLTGQI  796 (933)
Q Consensus       726 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N--------~l~~~i  796 (933)
                            ++|+.|+|++|.|+|.+|..+..+.. +..|+|++|.++|.+|..      |+.|++++|        .+.+.+
T Consensus       316 ------~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~  383 (727)
T 4b8c_D          316 ------CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQST  383 (727)
T ss_dssp             ------TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------
T ss_pred             ------CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccc
Confidence                  46778999999999999998876533 335899999999999874      566777777        555556


Q ss_pred             CcCCcCCCCCCeEEccCCcCcccCCC
Q 002350          797 PPQLTALNFLSIFNVSYNNLSGRTPD  822 (933)
Q Consensus       797 p~~l~~l~~L~~L~ls~N~l~g~~p~  822 (933)
                      +..+..+..+....+++|-+.+....
T Consensus       384 ~~~~~~l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          384 EHLATDLAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ------------------CCCGGGCC
T ss_pred             cchhhcccccceeeeeccccccccCc
Confidence            66667788888899999998765543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.4e-16  Score=158.86  Aligned_cols=132  Identities=26%  Similarity=0.380  Sum_probs=100.2

Q ss_pred             cEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch-hhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCc
Q 002350          586 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV  664 (933)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~  664 (933)
                      +++++++|+++ .+|..+..  +|++|++++|++++..+. .|..+++|++|++++|++++..|..|.++          
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------   77 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA----------   77 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence            56777777775 55655432  677777777777765554 37778888888888888877666555432          


Q ss_pred             cCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcC
Q 002350          665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL  744 (933)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  744 (933)
                                                                                         ++|+.|||++|++
T Consensus        78 -------------------------------------------------------------------~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           78 -------------------------------------------------------------------SHIQELQLGENKI   90 (192)
T ss_dssp             -------------------------------------------------------------------TTCCEEECCSCCC
T ss_pred             -------------------------------------------------------------------ccCCEEECCCCcC
Confidence                                                                               3567788888888


Q ss_pred             CCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCC
Q 002350          745 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP  797 (933)
Q Consensus       745 ~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip  797 (933)
                      ++..|..|+.+++|++|+|++|++++.+|..|+.+++|++|+|++|.+++..+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            87777778888889999999999998888889999999999999999887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=2.6e-16  Score=165.24  Aligned_cols=170  Identities=22%  Similarity=0.302  Sum_probs=126.5

Q ss_pred             cCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEE
Q 002350          462 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL  541 (933)
Q Consensus       462 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  541 (933)
                      +.++..+++++|.+++. + .+..+++|++|++++|.++ .++ .+..++. |+.|++++|++++..+  +..+++|+.|
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTN-LKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTT-CCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCC-CCEEECCCCccCCChh--hccCCCCCEE
Confidence            45556666666666633 2 4556677777777777776 444 4555555 7777777777775444  7778888888


Q ss_pred             EccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCC
Q 002350          542 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG  621 (933)
Q Consensus       542 ~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  621 (933)
                      ++++|++++..+ ... ++|++|++++|++++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++++
T Consensus        91 ~L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           91 SVNRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             ECCSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            888888776433 223 7888888888888764  3588889999999999999864 4 68889999999999999987


Q ss_pred             CCchhhhcCCCCCEEEccCCcCCCC
Q 002350          622 PIPDQLCQLQKLAMMDLSRNKFSGS  646 (933)
Q Consensus       622 ~~p~~l~~l~~L~~L~Ls~N~l~g~  646 (933)
                      .  ..+..+++|+.|++++|++++.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            5  6788899999999999999865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.2e-15  Score=152.70  Aligned_cols=150  Identities=16%  Similarity=0.196  Sum_probs=95.7

Q ss_pred             CCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEE
Q 002350          487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLS  565 (933)
Q Consensus       487 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~  565 (933)
                      ++|++|++++|.++ .+| .+..++. |++|++++|.++  .+..+..+++|++|++++|++++..+..+ .+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHN-IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTT-CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCC-CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            34444444444444 333 2333333 555555555433  12245566667777777777666555555 667777777


Q ss_pred             eecCcCcccCchhhccCCCccEEeCcCCc-CcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          566 LQKNALNGLIPGELFRSCKLVTLNLRDNT-FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       566 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +++|.+++..|..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            77777776667778888888888888887 54 455 67888888888888888875 33 6788888888888888875


Q ss_pred             C
Q 002350          645 G  645 (933)
Q Consensus       645 g  645 (933)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=7.9e-17  Score=175.70  Aligned_cols=288  Identities=13%  Similarity=0.134  Sum_probs=176.7

Q ss_pred             CCCCCEeeCCCCCCccccCccccccCCC-CCCCCEEeCCCCcCC--CcchhhhcCCCCCCEEecCCCcccCccChhhhcC
Q 002350          116 LEELQSLDLSVNIFTYDSKVAAYDSLRS-LKQLKILVLGHNYFD--DSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE  192 (933)
Q Consensus       116 l~~L~~LdLs~n~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~  192 (933)
                      +.+++.|+++++     +.......+.. +++|++|||++|++.  .....   .++.++.+.+..|.+    +...+..
T Consensus        24 ~~~l~~L~l~g~-----i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I----~~~aF~~   91 (329)
T 3sb4_A           24 ANSITHLTLTGK-----LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV----PAYAFSN   91 (329)
T ss_dssp             HHHCSEEEEEEE-----ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE----CTTTTEE
T ss_pred             hCceeEEEEecc-----ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc----CHHHhcc
Confidence            556777777643     11111123333 667777777777765  11111   122234444444432    2245555


Q ss_pred             --------CCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhh
Q 002350          193 --------LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA  264 (933)
Q Consensus       193 --------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  264 (933)
                              +++|++|+|.+ .++.....+|.+|++|+.+++++|.+....+..|.++.++..+....+...        .
T Consensus        92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~--------~  162 (329)
T 3sb4_A           92 VVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY--------R  162 (329)
T ss_dssp             EETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------H
T ss_pred             cccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------h
Confidence                    67777777776 666655566777777777777777666555666666665555554442210        0


Q ss_pred             cCCCCceEecccccCccccccCCCCCCCcce-EEEccCCCCCCCCchhhh----CCCCCCEEEccCCCCcccchhHHHhC
Q 002350          265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLI-VLGLTKCNLNGSYPDFLL----HQYHLKYLDLSHNKLVGNFPTWLLRN  339 (933)
Q Consensus       265 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~~  339 (933)
                                    ....+...+|..+..|+ .+.+...   +.++..+.    ...+++.+.+.++-.. .....+...
T Consensus       163 --------------~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~  224 (329)
T 3sb4_A          163 --------------FKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDY  224 (329)
T ss_dssp             --------------TSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHH
T ss_pred             --------------ccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHh
Confidence                          00111222333333444 3333321   11222221    3456677777665332 223333345


Q ss_pred             CCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCcc-EEEccCCCCCCCccccccCCCCCCE
Q 002350          340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM-YMDISKNCFEGNIPYSAGEMKELSL  418 (933)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~  418 (933)
                      +++|+.+++++|+++.++...|..+++|+++++.+| ++ .++...|..+++|+ .+++.+ .++...+.+|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            788899999888888888888888889999999887 65 78888888888998 999988 676666788899999999


Q ss_pred             EEcCCCcCCCCcchhhhcCCCCCCEEEC
Q 002350          419 LDLSRNYFSGGLSQSVVTGCFSLELLDL  446 (933)
Q Consensus       419 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  446 (933)
                      ++++.|++. .++...|.++++|+.++.
T Consensus       302 l~l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccC-ccchhhhcCCcchhhhcc
Confidence            999888887 788888889999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=4.9e-16  Score=169.39  Aligned_cols=290  Identities=12%  Similarity=0.077  Sum_probs=150.6

Q ss_pred             CCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhc------
Q 002350          315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI------  388 (933)
Q Consensus       315 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~------  388 (933)
                      +.+++.|.++++- ...-...+...+++|+.|+|++|++...... .+.++.++.+.+..|    .+|...|..      
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~   97 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMAN----FVPAYAFSNVVNGVT   97 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTT----EECTTTTEEEETTEE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCc-ccccccccccccccc----ccCHHHhcccccccc
Confidence            4567788877542 1111122332367788888888877622111 112222344444444    344445444      


Q ss_pred             --CCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCC
Q 002350          389 --LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR  466 (933)
Q Consensus       389 --l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  466 (933)
                        +++|+.+++.+ .++...+.+|..+++|+.+++++|.+. .++...|.++.++..+....+...              
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~--------------  161 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY--------------  161 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh--------------
Confidence              55666666655 454444445555555555555555554 444444444444444443332110              


Q ss_pred             eEEccCccccccccccccCCCCCC-EEEccCCcCCCCChhhHhhh---ccccceeecCCCcCCCCcchhccCCCCCCEEE
Q 002350          467 HLYFENNNFSGKIKDGLLSSTSLQ-VLDISNNMLSGHIPHWMGNF---SSELEILSMSKNHLEGNVPVQLNNLERLRILD  542 (933)
Q Consensus       467 ~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~l~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  542 (933)
                            ..........+..+..|+ .+.+...   +.++..+...   ..+++.+.+.++-...........+++|+.++
T Consensus       162 ------~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~  232 (329)
T 3sb4_A          162 ------RFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD  232 (329)
T ss_dssp             ------HTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE
T ss_pred             ------hccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE
Confidence                  000111122233334444 3333221   1233322211   12244444443321111111112356677777


Q ss_pred             ccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCcc-EEeCcCCcCcccCchhhhcCCCccEEEcCCCcCC
Q 002350          543 ISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV-TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ  620 (933)
Q Consensus       543 Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  620 (933)
                      +++|+++...+..| ++++|+.+++.+| +..+.+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|+++
T Consensus       233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            77766666555555 6677777777666 6656666777777777 777777 666566677777777777777777777


Q ss_pred             CCCchhhhcCCCCCEEE
Q 002350          621 GPIPDQLCQLQKLAMMD  637 (933)
Q Consensus       621 ~~~p~~l~~l~~L~~L~  637 (933)
                      ...+.+|.++++|+.++
T Consensus       311 ~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          311 TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECTTTTCTTCCCCEEE
T ss_pred             ccchhhhcCCcchhhhc
Confidence            66666777777777775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=8.1e-15  Score=145.88  Aligned_cols=89  Identities=25%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      +|+.|||++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            45567777777776666677778888888888888887777788888888888888888886666678888888888888


Q ss_pred             CCcCcccCC
Q 002350          813 YNNLSGRTP  821 (933)
Q Consensus       813 ~N~l~g~~p  821 (933)
                      +|++.+.++
T Consensus       135 ~N~~~C~c~  143 (193)
T 2wfh_A          135 ANPLYCDCN  143 (193)
T ss_dssp             SSCEECSGG
T ss_pred             CCCeecCCc
Confidence            888776554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=4.3e-15  Score=144.64  Aligned_cols=87  Identities=23%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeecccccccccc-chhccCCCCCCEEECcCCeecccCC---cCCcCCCCCC
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS  807 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~  807 (933)
                      ++|+.|||++|++++.+|..++.+++|++|+|++|++++.. +..++++++|++|++++|++++..+   ..+..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            34555666666666556666666666666666666666532 2566666667777777776664444   3566666777


Q ss_pred             eEEccCCcCcc
Q 002350          808 IFNVSYNNLSG  818 (933)
Q Consensus       808 ~L~ls~N~l~g  818 (933)
                      +|++++|.+..
T Consensus       151 ~L~l~~n~~~~  161 (168)
T 2ell_A          151 YLDGYDREDQE  161 (168)
T ss_dssp             EETTEETTSCB
T ss_pred             EecCCCCChhh
Confidence            77777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=144.61  Aligned_cols=112  Identities=27%  Similarity=0.412  Sum_probs=102.0

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      .++.|+|++|+++ .+|..+..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            5778999999998 888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCC-CcCCccCcccccCCCCCCCccc
Q 002350          813 YNNLSGRTPDK-GQFATFDESSYRGNPSLCAWLI  845 (933)
Q Consensus       813 ~N~l~g~~p~~-~~~~~~~~~~~~gN~~lc~~~l  845 (933)
                      +|++++..+.. ..+..+....+.+||+.|+|.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            99999766643 4566777888999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=8.7e-15  Score=139.29  Aligned_cols=128  Identities=25%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             CCCCCEeeCCCCCCc-cccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCC
Q 002350          116 LEELQSLDLSVNIFT-YDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELK  194 (933)
Q Consensus       116 l~~L~~LdLs~n~~~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~  194 (933)
                      .++|++|++++|.+. +.++    ..+..+++|++|++++|.+++.  ..++++++|++|++++|.+++..| ..+..++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLE----GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCC----SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCT
T ss_pred             CccCeEEEccCCcCChhHHH----HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCC
Confidence            356666666666665 4444    4455666666666666666544  445555666666666665555433 3344455


Q ss_pred             CCCEEECCCCCCCCc-chhhcCCCCCCCEEEccCCcCCCCCc---hhccCCCCCCEEECC
Q 002350          195 NLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLNGSLP---SVISNLTSLEYLDLS  250 (933)
Q Consensus       195 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~  250 (933)
                      +|++|++++|.+++. .+..++++++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555555555552 23445555555555555555554433   344555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.8e-14  Score=141.57  Aligned_cols=90  Identities=22%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      +|+.|++++|++++..+..++.+++|++|+|++|++++..+..|+++++|++|+|++|++++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            56667777777776556667788888888888888887777778888999999999999987666667888899999999


Q ss_pred             CCcCcccCCC
Q 002350          813 YNNLSGRTPD  822 (933)
Q Consensus       813 ~N~l~g~~p~  822 (933)
                      +|+++|.+|.
T Consensus       133 ~N~~~~~~~~  142 (177)
T 2o6r_A          133 TNPWDCSCPR  142 (177)
T ss_dssp             SSCBCCCHHH
T ss_pred             CCCeeccCcc
Confidence            9988887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=2e-14  Score=139.94  Aligned_cols=131  Identities=16%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             ccceeecCCCcCC-CCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCc
Q 002350          513 ELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR  591 (933)
Q Consensus       513 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  591 (933)
                      +|+.|++++|.++ +.+|..+..+++|+.|++++|++++. +....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            3777777777776 56666677778888888888887766 333378888888888888887778888888999999999


Q ss_pred             CCcCcccC-chhhhcCCCccEEEcCCCcCCCCCc---hhhhcCCCCCEEEccCCcCC
Q 002350          592 DNTFSGRI-PHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       592 ~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      +|++++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99988542 2778889999999999999986655   47888999999999999876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=3.1e-14  Score=135.40  Aligned_cols=128  Identities=20%  Similarity=0.207  Sum_probs=106.3

Q ss_pred             cccceeecCCCcCC-CCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeC
Q 002350          512 SELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL  590 (933)
Q Consensus       512 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  590 (933)
                      .+|+.|++++|.++ +.+|..+..+++|+.|++++|++++. +....+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34888888888887 67777788888999999999988876 33337889999999999998878888888999999999


Q ss_pred             cCCcCccc-CchhhhcCCCccEEEcCCCcCCCCCc---hhhhcCCCCCEEEccC
Q 002350          591 RDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSR  640 (933)
Q Consensus       591 s~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~  640 (933)
                      ++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999863 34788899999999999999987665   5788899999998863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=7.4e-16  Score=154.50  Aligned_cols=155  Identities=21%  Similarity=0.274  Sum_probs=119.3

Q ss_pred             hccCCCccEEeCcCCcCcccCch------hhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhh
Q 002350          579 LFRSCKLVTLNLRDNTFSGRIPH------QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA  652 (933)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~  652 (933)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34445666666666666666555      88888999999999999886 66 8888899999999999887 5565433


Q ss_pred             hhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCC
Q 002350          653 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN  732 (933)
Q Consensus       653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  732 (933)
                      .+                                                                             +
T Consensus        91 ~~-----------------------------------------------------------------------------~   93 (198)
T 1ds9_A           91 VA-----------------------------------------------------------------------------D   93 (198)
T ss_dssp             HH-----------------------------------------------------------------------------H
T ss_pred             cC-----------------------------------------------------------------------------C
Confidence            22                                                                             2


Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccc-hhccCCCCCCEEECcCCeecccCCcC----------Cc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------LT  801 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~  801 (933)
                      +|+.||+++|++++ +| .++.+++|+.|++++|++++..+ ..+.++++|++|++++|++++.+|..          +.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            57779999999985 55 68888999999999999986443 57889999999999999998877764          77


Q ss_pred             CCCCCCeEEccCCcCc
Q 002350          802 ALNFLSIFNVSYNNLS  817 (933)
Q Consensus       802 ~l~~L~~L~ls~N~l~  817 (933)
                      .+++|++||  +|.++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            888888887  56554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=4.7e-13  Score=148.81  Aligned_cols=264  Identities=12%  Similarity=0.075  Sum_probs=149.1

Q ss_pred             CCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEE
Q 002350          340 NPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLL  419 (933)
Q Consensus       340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  419 (933)
                      +..++.+.+.+ .++.+....|..+ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+....+.+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            45666666654 3555544555554 5666666554 33 444444443 3466666554 3443334455555555555


Q ss_pred             EcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcC
Q 002350          420 DLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML  499 (933)
Q Consensus       420 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  499 (933)
                      +++.|.++ .++...|. +.+|+.+.+..+ +..+...+                        |..+++|+.+++..+ +
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~a------------------------F~~~~~L~~l~l~~~-l  237 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQA------------------------FLKTSQLKTIEIPEN-V  237 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTT------------------------TTTCTTCCCEECCTT-C
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhH------------------------hhCCCCCCEEecCCC-c
Confidence            55555554 44444443 345555555422 33333344                        444444444444432 2


Q ss_pred             CCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCc-----cccCccc-cCCCCceEEeecCcCcc
Q 002350          500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS-----GPIASSL-NLSSVEHLSLQKNALNG  573 (933)
Q Consensus       500 ~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~-~l~~L~~L~L~~n~l~~  573 (933)
                      + .++...+.... |+.+.+ .+.++.....+|.+|++|+.+++.+|.+.     ...+..| +|++|+.+.+. +.+..
T Consensus       238 ~-~I~~~aF~~~~-L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~  313 (401)
T 4fdw_A          238 S-TIGQEAFRESG-ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI  313 (401)
T ss_dssp             C-EECTTTTTTCC-CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE
T ss_pred             c-CccccccccCC-ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE
Confidence            2 22221111122 666666 33344455667777778888877776654     2334445 67777777777 34666


Q ss_pred             cCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCC-CCCEEEccCCcC
Q 002350          574 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKF  643 (933)
Q Consensus       574 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l  643 (933)
                      +....|.+|++|+.++|..| ++...+.+|.++ +|+.+++.+|.+....+..|.+++ .++.|++..+.+
T Consensus       314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            66677777888888888554 555566777777 888888888877765666677664 667777665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=1.8e-13  Score=134.41  Aligned_cols=132  Identities=22%  Similarity=0.274  Sum_probs=100.5

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                      .+.+++++++++ .+|..+  .++|+.|++++|++.+..+..+ .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            455666666665 334322  2567777777777776665555 677777777777777766666778888999999999


Q ss_pred             CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCC
Q 002350          593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP  648 (933)
Q Consensus       593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p  648 (933)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99987777778888999999999999987666677889999999999999987665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=6.8e-13  Score=147.54  Aligned_cols=269  Identities=9%  Similarity=0.097  Sum_probs=192.1

Q ss_pred             CCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccE
Q 002350          315 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY  394 (933)
Q Consensus       315 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  394 (933)
                      +..++.+.+.. .++ .++...|.++ +|+.+.+..+ ++.+...+|..+ +|+.+.+.. .++ .++...|..+++|+.
T Consensus       112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            46788888865 454 6777667664 7999999876 888877788775 699999986 565 677777788999999


Q ss_pred             EEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCcc
Q 002350          395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN  474 (933)
Q Consensus       395 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  474 (933)
                      ++++.|.++......|. +.+|+.+.+..+ +. .++...|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            99999999855455555 689999999865 55 788888999999999999875 56566667777 789999984 44


Q ss_pred             ccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCc
Q 002350          475 FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS  554 (933)
Q Consensus       475 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  554 (933)
                      ++.....+|..+++|+.+++.+|.+..                    +......+.+|.+|++|+.+++. +.+......
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~  317 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG  317 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence            555667788888889988888776541                    01111334456666666666666 335544455


Q ss_pred             cc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCC-CccEEEcCCCcC
Q 002350          555 SL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS-NLRFLLLGGNHL  619 (933)
Q Consensus       555 ~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l  619 (933)
                      .| +|++|+.+.|..+ ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+
T Consensus       318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            55 6677777777443 555556667777 777777777776655556666653 667777766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=7.9e-13  Score=147.80  Aligned_cols=334  Identities=10%  Similarity=0.062  Sum_probs=160.7

Q ss_pred             cccccccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCc
Q 002350          105 FPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGS  184 (933)
Q Consensus       105 ~~~~~~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  184 (933)
                      ++.|...+|..+++|+.++|..+ ++.    .+..+|.++++|+.+++..+ ++......|.++++|+.+.+..+ +...
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~----I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i  131 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VRE----IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI  131 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCE----ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccC----cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee
Confidence            34567778888888888888643 322    22267777888888887654 44444556677777776666543 2211


Q ss_pred             cChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCChhhhh
Q 002350          185 QTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA  264 (933)
Q Consensus       185 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  264 (933)
                      .. ..+..+..++.......  ......+|.+|++|+.+.+.++. .......|.++.+|+.+++..+ ++ .++...+.
T Consensus       132 ~~-~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~  205 (394)
T 4fs7_A          132 GV-EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFA  205 (394)
T ss_dssp             CT-TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTT
T ss_pred             cc-eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhc
Confidence            11 33444433332222221  11223456666666666665432 2233445555666666555544 11 22233344


Q ss_pred             cCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCC
Q 002350          265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLE  344 (933)
Q Consensus       265 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  344 (933)
                      ++..|+.+.+                         ..+...  +.+......+|+.+.+.... + .+....+..+..++
T Consensus       206 ~~~~L~~i~~-------------------------~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~  256 (394)
T 4fs7_A          206 ECILLENMEF-------------------------PNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLE  256 (394)
T ss_dssp             TCTTCCBCCC-------------------------CTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCC
T ss_pred             cccccceeec-------------------------CCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccce
Confidence            4444444333                         222111  11222233445555554321 1 23333334555555


Q ss_pred             EEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCC
Q 002350          345 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN  424 (933)
Q Consensus       345 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  424 (933)
                      .+.+..+. ..+....+..+..++.+....+.    ++...+..+.+|+.+.+..+ ++.....+|.++++|+.+++..+
T Consensus       257 ~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          257 SISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             EEEECCTT-CEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             eEEcCCCc-ceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence            55555442 22333444555555555554432    23333344555666655443 33233344555555666555433


Q ss_pred             cCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCE
Q 002350          425 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV  491 (933)
Q Consensus       425 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  491 (933)
                       ++ .+....|.+|.+|+.+++..+ ++.....+|.+|++|+.+++..+ +. .+...|.++++|+.
T Consensus       331 -v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          331 -VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             -CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             -cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence             22 444455555555555555544 44444445555555555555433 11 12234444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=7.6e-13  Score=147.91  Aligned_cols=218  Identities=15%  Similarity=0.129  Sum_probs=107.1

Q ss_pred             ccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCC
Q 002350          410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL  489 (933)
Q Consensus       410 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  489 (933)
                      |.++++|+.+.+..+..  .++...|.++.+|+.+.+..+ +.......|.++..|+.+.+..+...  +........+|
T Consensus       158 F~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l  232 (394)
T 4fs7_A          158 FATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV  232 (394)
T ss_dssp             TTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred             hcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence            44444444444443321  234444444555555544433 33233334445555555544443322  12222333455


Q ss_pred             CEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeec
Q 002350          490 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK  568 (933)
Q Consensus       490 ~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~  568 (933)
                      +.+.+.... +......+..+.. ++.+.+..+... .....|..+..++.+....+.+   ....+ .+.+|+.+.+.+
T Consensus       233 ~~i~ip~~~-~~i~~~~f~~~~~-l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          233 KNIIIPDSF-TELGKSVFYGCTD-LESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             CEEEECTTC-CEECSSTTTTCSS-CCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred             ceEEECCCc-eeccccccccccc-ceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence            555554321 1011112223333 555555544332 3444556666666666554332   11222 566666666654


Q ss_pred             CcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCC
Q 002350          569 NALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN  641 (933)
Q Consensus       569 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  641 (933)
                      + ++.+...+|.+|.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus       307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            3 44444556666777777777543 54444566667777777777655 55444566777777777776544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=2.8e-13  Score=131.76  Aligned_cols=91  Identities=23%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      .++.|+|++|++++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            56779999999998888889999999999999999998888888999999999999999998777778999999999999


Q ss_pred             CCcCcccCCCC
Q 002350          813 YNNLSGRTPDK  823 (933)
Q Consensus       813 ~N~l~g~~p~~  823 (933)
                      +|++++.++..
T Consensus       111 ~N~~~c~c~~l  121 (170)
T 3g39_A          111 NNPWDCACSDI  121 (170)
T ss_dssp             SSCBCTTBGGG
T ss_pred             CCCCCCCchhH
Confidence            99998877643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=4e-13  Score=130.63  Aligned_cols=109  Identities=23%  Similarity=0.275  Sum_probs=97.5

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      ..+.+|+++|+++ .+|..+.  +.|+.|+|++|+|++..|..|+++++|++|||++|+|++..|..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3467999999998 5887774  789999999999999999999999999999999999998888888999999999999


Q ss_pred             CCcCcccCCC-CCcCCccCcccccCCCCCCCcc
Q 002350          813 YNNLSGRTPD-KGQFATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       813 ~N~l~g~~p~-~~~~~~~~~~~~~gN~~lc~~~  844 (933)
                      +|+|++..|. ...+..+....+.+||+.|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999987775 3567778888899999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=6.6e-15  Score=147.53  Aligned_cols=150  Identities=24%  Similarity=0.274  Sum_probs=116.1

Q ss_pred             CCceEEeecCcCcccCc------hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCC
Q 002350          560 SVEHLSLQKNALNGLIP------GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL  633 (933)
Q Consensus       560 ~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  633 (933)
                      .++.++++.+.+.+.+|      ..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            34444444444444444      488889999999999999986 66 8888999999999999998 578888888999


Q ss_pred             CEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhh
Q 002350          634 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERV  713 (933)
Q Consensus       634 ~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  713 (933)
                      +.|++++|++++ +| .+..                                                            
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~------------------------------------------------------------  113 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEK------------------------------------------------------------  113 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHH------------------------------------------------------------
T ss_pred             CEEECcCCcCCc-CC-cccc------------------------------------------------------------
Confidence            999999999885 33 2322                                                            


Q ss_pred             HHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCC-hhhhhccccCeeeccccccccccchh----------ccCCCCC
Q 002350          714 EIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPES----------FSNLKMI  782 (933)
Q Consensus       714 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L  782 (933)
                                       +++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|..          +..+++|
T Consensus       114 -----------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A          114 -----------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             -----------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             -----------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence                             2357789999999985322 47888999999999999999887763          8899999


Q ss_pred             CEEECcCCeec
Q 002350          783 ESLDISYNKLT  793 (933)
Q Consensus       783 ~~LdLs~N~l~  793 (933)
                      +.||  +|.++
T Consensus       177 ~~Ld--~~~i~  185 (198)
T 1ds9_A          177 KKLD--GMPVD  185 (198)
T ss_dssp             SEEC--CGGGT
T ss_pred             EEEC--CcccC
Confidence            9998  66665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=2.9e-13  Score=132.62  Aligned_cols=84  Identities=20%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccch--hccCCCCCCEEECcCCeecccCCcC----CcCCCCC
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE--SFSNLKMIESLDISYNKLTGQIPPQ----LTALNFL  806 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L  806 (933)
                      +|+.|||++|++++..|..++.+++|+.|+|++|+++ .+|.  .++++++|+.|++++|.++ .+|..    +..++.|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            4555666666665443344466666666666666664 3444  5666666666666666666 34443    6666667


Q ss_pred             CeEEccCCcCcc
Q 002350          807 SIFNVSYNNLSG  818 (933)
Q Consensus       807 ~~L~ls~N~l~g  818 (933)
                      ++||+++|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            777777666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=4e-13  Score=131.68  Aligned_cols=134  Identities=22%  Similarity=0.167  Sum_probs=91.2

Q ss_pred             cccCCCCCCCEeeCCCCCCccccCccccccCCCCC-CCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhh
Q 002350          111 SLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLK-QLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQG  189 (933)
Q Consensus       111 ~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  189 (933)
                      ..|...++|++|++++|.+... +     .+..+. +|++|++++|.+++.  ..+..+++|++|++++|++++..+ ..
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i-~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI-E-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-C-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CH
T ss_pred             HhcCCcCCceEEEeeCCCCchh-H-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-ch
Confidence            3566777888888888877632 2     244444 788888888887754  567777778888888877775533 34


Q ss_pred             hcCCCCCCEEECCCCCCCCcchh--hcCCCCCCCEEEccCCcCCCCCch----hccCCCCCCEEECCCCcCC
Q 002350          190 ICELKNLFEMNLERNFIGSPLIT--CLKNLTRLKILDISSNQLNGSLPS----VISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       190 l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~  255 (933)
                      +..+++|++|++++|.++. +|.  .++++++|++|++++|.++. .|.    .+..+++|++|+++.|...
T Consensus        84 ~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            4677777777777777754 443  66777777777777777763 344    3667777777777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=8.2e-13  Score=128.81  Aligned_cols=90  Identities=22%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      +|+.|+|++|++++.+|..|+.+++|+.|+|++|+|++..+..|+++++|++|||++|+|++..+..+..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            56779999999998888889999999999999999998777778899999999999999997666678899999999999


Q ss_pred             CCcCcccCCC
Q 002350          813 YNNLSGRTPD  822 (933)
Q Consensus       813 ~N~l~g~~p~  822 (933)
                      +|++.+.++.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9998876653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.6e-12  Score=126.79  Aligned_cols=107  Identities=21%  Similarity=0.246  Sum_probs=95.9

Q ss_pred             cEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350          735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  814 (933)
Q Consensus       735 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  814 (933)
                      +.+|+++|+++ .+|..+.  +.|+.|+|++|+|++.+|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57999999997 7888775  89999999999999999999999999999999999999877777899999999999999


Q ss_pred             cCcccCCC-CCcCCccCcccccCCCCCCCcc
Q 002350          815 NLSGRTPD-KGQFATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       815 ~l~g~~p~-~~~~~~~~~~~~~gN~~lc~~~  844 (933)
                      +|++..|. ...+..+....+.+|++-|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99987765 3567778888899999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=1.1e-11  Score=135.97  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             EEEcCCC-cCCCCCChhhhhccccCeeeccc-cccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccC
Q 002350          736 GLDLSCN-QLTGEIPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  813 (933)
Q Consensus       736 ~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  813 (933)
                      .+|++++ +|+ .+|. ++.+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|++|||++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4788888 888 5788 88888899999986 999988888899999999999999999988888889999999999999


Q ss_pred             CcCcccCCCCCcCCccCcccccCCCCCCCcc
Q 002350          814 NNLSGRTPDKGQFATFDESSYRGNPSLCAWL  844 (933)
Q Consensus       814 N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~  844 (933)
                      |+|++..|.......+....+.+|++-|.|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            9998766654333346777788899888775

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=2e-12  Score=142.35  Aligned_cols=143  Identities=23%  Similarity=0.234  Sum_probs=74.7

Q ss_pred             CCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhc-----cCCCCCCEEEccCCcCccc----cCccc-c
Q 002350          488 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL-----NNLERLRILDISENRLSGP----IASSL-N  557 (933)
Q Consensus       488 ~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~-~  557 (933)
                      +|++|+|++|.+++.....+.....+|+.|+|++|.++......+     ...++|+.|+|++|.++..    ++..+ .
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            444555555544322222222211125555555555543322222     2345566666666665431    11122 3


Q ss_pred             CCCCceEEeecCcCccc----CchhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350          558 LSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  629 (933)
Q Consensus       558 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  629 (933)
                      +++|++|+|++|.++..    ++..+...++|++|+|++|.++..    ++..+...++|++|+|++|+++......+..
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            55566666666665432    244556667778888888877643    3344556677888888888777554444544


Q ss_pred             C
Q 002350          630 L  630 (933)
Q Consensus       630 l  630 (933)
                      +
T Consensus       262 ~  262 (372)
T 3un9_A          262 L  262 (372)
T ss_dssp             C
T ss_pred             H
Confidence            3

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.18  E-value=7.2e-10  Score=123.70  Aligned_cols=123  Identities=11%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcC
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD  592 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  592 (933)
                      |+.+.+.++... ....+|.+++.|+.+.+. +.+.......| +|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..
T Consensus       267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            555555433222 344556666677777665 33444444455 6677777777543 5545556777778888888765


Q ss_pred             CcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcC
Q 002350          593 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF  643 (933)
Q Consensus       593 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  643 (933)
                      + ++..-..+|.+|++|+.+++.++...   -..+..+..|+.+.+..|.+
T Consensus       344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            4 55455677788888888888776543   24566677777777766544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=2.2e-11  Score=133.64  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=81.4

Q ss_pred             CcccEEEcCC-CcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEE
Q 002350          732 NRVTGLDLSC-NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN  810 (933)
Q Consensus       732 ~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  810 (933)
                      .+|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            4678899996 999988889999999999999999999999999999999999999999999977777777776 99999


Q ss_pred             ccCCcCcccCC
Q 002350          811 VSYNNLSGRTP  821 (933)
Q Consensus       811 ls~N~l~g~~p  821 (933)
                      +++|++.+.++
T Consensus       110 l~~N~~~c~c~  120 (347)
T 2ifg_A          110 LSGNPLHCSCA  120 (347)
T ss_dssp             CCSSCCCCCGG
T ss_pred             eeCCCccCCCc
Confidence            99999998665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.17  E-value=9.1e-10  Score=122.86  Aligned_cols=113  Identities=6%  Similarity=0.121  Sum_probs=90.8

Q ss_pred             CcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhc
Q 002350          527 NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE  605 (933)
Q Consensus       527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  605 (933)
                      ....+|.++..|+.+.+.++.. ......+ +++.|+.+.+. +.++.+....|.+|.+|+.++|..+ ++.....+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            4456789999999999986543 3344445 89999999996 4566666788999999999999875 66566788999


Q ss_pred             CCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcC
Q 002350          606 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF  643 (933)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  643 (933)
                      |.+|+.+.+..+ ++..-..+|.+|++|+.+++.++..
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            999999999765 6656678999999999999987753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=5.3e-12  Score=138.91  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=56.8

Q ss_pred             CCCCEEeCCCCcCCCcchhhhc-----CCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhc-----
Q 002350          145 KQLKILVLGHNYFDDSIFSYLN-----TLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCL-----  214 (933)
Q Consensus       145 ~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----  214 (933)
                      ++|++|+|++|.++......+.     ..++|++|+|++|.++..........+++|++|+|++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4556666666666543333322     124666666666665433221122234456666666666655433333     


Q ss_pred             CCCCCCCEEEccCCcCCCC----CchhccCCCCCCEEECCCCcCC
Q 002350          215 KNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       215 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  255 (933)
                      ...++|++|+|++|.++..    ++..+..+++|++|+|++|.++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            2345666666666665432    2233345566666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.96  E-value=2.2e-08  Score=111.01  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=48.6

Q ss_pred             hhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCC
Q 002350          530 VQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN  608 (933)
Q Consensus       530 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  608 (933)
                      .+|.++..|+.+.+..+ ++......+ ++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.....+|.+|.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            33444444555444433 222222233 4444555444322 33333344455555555555555554444445555555


Q ss_pred             ccEEEcCCCcCCCCCchhhhcCCCCCEEEcc
Q 002350          609 LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS  639 (933)
Q Consensus       609 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  639 (933)
                      |+.+.|..+ ++..-..+|.++++|+.+.+.
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            555555433 332333445555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.88  E-value=8.3e-08  Score=106.36  Aligned_cols=130  Identities=8%  Similarity=0.030  Sum_probs=62.0

Q ss_pred             ccccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhh
Q 002350          110 MSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQG  189 (933)
Q Consensus       110 ~~~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  189 (933)
                      .++|..-.+|+.+.+... ++    ..+..+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ ++.. ....
T Consensus        39 ~~~~~~~~~i~~v~ip~~-vt----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I-~~~a  109 (379)
T 4h09_A           39 IPWYKDRDRISEVRVNSG-IT----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKF-GDYV  109 (379)
T ss_dssp             STTGGGGGGCSEEEECTT-EE----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEE-CTTT
T ss_pred             ccccccccCCEEEEeCCC-cc----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEe-ccce
Confidence            345555666777776532 22    122256777777777777543 444445556555 4555555433 2211 1123


Q ss_pred             hcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCC
Q 002350          190 ICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN  252 (933)
Q Consensus       190 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  252 (933)
                      +... +|+.+.+..+ +......+|.++ +|+.+.+..+ ++......+..+.+++...+..+
T Consensus       110 F~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          110 FQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred             eccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccc
Confidence            3332 5666666543 222223334433 3444444332 22233344555555555554433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=1.4e-08  Score=110.62  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=44.5

Q ss_pred             CcccEEEcCCCcCCCCCChhhh---hccccCeeeccccccccc----cchhccCCCCCCEEECcCCeecccCCcCCcC-C
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIG---QLQAILALNLSNNSLSGS----IPESFSNLKMIESLDISYNKLTGQIPPQLTA-L  803 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l  803 (933)
                      ++|+.|+|++|.+++..+..+.   .++.|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            4556666666665543333332   356666677766666653    3333445667777777777665433222222 2


Q ss_pred             CCCCeEEccCCc
Q 002350          804 NFLSIFNVSYNN  815 (933)
Q Consensus       804 ~~L~~L~ls~N~  815 (933)
                        ...++++.|+
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              2456676665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.68  E-value=1.7e-09  Score=111.46  Aligned_cols=82  Identities=26%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             cCCCCCCEEecCCCcccCccCh-hhhcCCCCCCEEECCCCCCCCc-chhhcCCCCCCCEEEccCCcCCCCCc-------h
Q 002350          166 NTLPSLCTLILHWNRIEGSQTN-QGICELKNLFEMNLERNFIGSP-LITCLKNLTRLKILDISSNQLNGSLP-------S  236 (933)
Q Consensus       166 ~~l~~L~~L~Ls~n~i~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p-------~  236 (933)
                      .++++|++|+|++|++++..+. ..+..+++|++|+|++|.+.+. ....+..+ +|++|+|++|.+.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            4566677777777766653221 2345677777777777777663 11223333 77788888887776544       2


Q ss_pred             hccCCCCCCEEE
Q 002350          237 VISNLTSLEYLD  248 (933)
Q Consensus       237 ~l~~l~~L~~L~  248 (933)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356778888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=1.6e-08  Score=110.12  Aligned_cols=83  Identities=13%  Similarity=0.277  Sum_probs=46.0

Q ss_pred             CCCCceEEeecCcCcccCchhhc---cCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhhhc-
Q 002350          558 LSSVEHLSLQKNALNGLIPGELF---RSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ-  629 (933)
Q Consensus       558 l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-  629 (933)
                      +++|++|+|.+|.+....+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            56666666666666543333332   355677777777776643    2333345567777777777665433333332 


Q ss_pred             CCCCCEEEccCCc
Q 002350          630 LQKLAMMDLSRNK  642 (933)
Q Consensus       630 l~~L~~L~Ls~N~  642 (933)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  2456666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=1.7e-08  Score=99.18  Aligned_cols=91  Identities=21%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEc--cCCcCCCCC-
Q 002350          165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDI--SSNQLNGSL-  234 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~~-  234 (933)
                      +...++|++|+|++|.+.....   ...+...++|++|+|++|.+.+.    +...+...++|++|+|  ++|.+.... 
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            3444455555555554432111   12344455666666666666543    3445566667777777  667666432 


Q ss_pred             ---chhccCCCCCCEEECCCCcCC
Q 002350          235 ---PSVISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       235 ---p~~l~~l~~L~~L~L~~n~l~  255 (933)
                         ...+...++|++|++++|.+.
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCcCEEeccCCCCC
Confidence               234445577777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=4e-07  Score=93.72  Aligned_cols=65  Identities=26%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             CCcccEEEcCCCcCCC--CCChhhhhccccCeeeccccccccccchhccCCC--CCCEEECcCCeecccCC
Q 002350          731 VNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK--MIESLDISYNKLTGQIP  797 (933)
Q Consensus       731 l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~ip  797 (933)
                      ++.|+.|+||+|++++  .+|..++.+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+++.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3455556666666655  3444555555666666666665543  2233333  55555555555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=3.7e-07  Score=89.47  Aligned_cols=87  Identities=18%  Similarity=0.179  Sum_probs=57.3

Q ss_pred             CCCCceEEeecCcCccc----CchhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEc--CCCcCCCC----C
Q 002350          558 LSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLL--GGNHLQGP----I  623 (933)
Q Consensus       558 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~----~  623 (933)
                      .++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...+...++|++|+|  ++|.+...    +
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            34555555555555422    233445556788888888877643    4556666778888888  77887743    3


Q ss_pred             chhhhcCCCCCEEEccCCcCC
Q 002350          624 PDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       624 p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      ...+...++|+.|++++|.+.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeccCCCCC
Confidence            445666788999999888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=2.3e-06  Score=81.41  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=17.5

Q ss_pred             CCCEEECCCCC-CCCcchhhcCCCCCCCEEEccCC
Q 002350          195 NLFEMNLERNF-IGSPLITCLKNLTRLKILDISSN  228 (933)
Q Consensus       195 ~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n  228 (933)
                      +|++|+|++|. +++.....+.++++|++|++++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            35555555543 44444444555555555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=4e-06  Score=79.76  Aligned_cols=83  Identities=16%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             CCCEEecCCCcccCccChhhhcCCCCCCEEECCCCC-CCCcchhhcCCC----CCCCEEEccCCc-CCCCCchhccCCCC
Q 002350          170 SLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNF-IGSPLITCLKNL----TRLKILDISSNQ-LNGSLPSVISNLTS  243 (933)
Q Consensus       170 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~  243 (933)
                      +|++||++++.++.... ..+..+++|++|+|++|. +++.....++.+    ++|++|+|++|. ++...-..+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45555555555443322 345566667777777764 666555666664    479999999984 77665567788899


Q ss_pred             CCEEECCCCc
Q 002350          244 LEYLDLSHNN  253 (933)
Q Consensus       244 L~~L~L~~n~  253 (933)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999998886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=2.2e-05  Score=76.23  Aligned_cols=90  Identities=16%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEccCCcC---CCC-
Q 002350          165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDISSNQL---NGS-  233 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l---~~~-  233 (933)
                      +..-+.|+.|+|++|+|.....   ...+..-+.|++|+|+.|.|.+.    +.+++..-+.|++|+|++|..   ... 
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3334444444444444432111   12334455566666666666543    234455556677777765422   211 


Q ss_pred             ---CchhccCCCCCCEEECCCCcC
Q 002350          234 ---LPSVISNLTSLEYLDLSHNNF  254 (933)
Q Consensus       234 ---~p~~l~~l~~L~~L~L~~n~l  254 (933)
                         +...+..-+.|+.|+++.|.+
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCcCeEeccCCCc
Confidence               223445566777777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.28  E-value=0.00019  Score=69.53  Aligned_cols=118  Identities=14%  Similarity=0.195  Sum_probs=76.4

Q ss_pred             cCCCCCCCEeeCCCC-CCccccCccccccCCCCCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEecCCCcccCccC-
Q 002350          113 FHPLEELQSLDLSVN-IFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS----IFSYLNTLPSLCTLILHWNRIEGSQT-  186 (933)
Q Consensus       113 f~~l~~L~~LdLs~n-~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~-  186 (933)
                      +..-+.|++|+|++| .+.........+++..-+.|++|+|++|.+.+.    +...+..-+.|++|+|++|.|..... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345677888888875 666544444446677777888888888887643    34445566778888888888764322 


Q ss_pred             --hhhhcCCCCCCEEECCCC---CCCCc----chhhcCCCCCCCEEEccCCcC
Q 002350          187 --NQGICELKNLFEMNLERN---FIGSP----LITCLKNLTRLKILDISSNQL  230 (933)
Q Consensus       187 --~~~l~~l~~L~~L~Ls~n---~l~~~----~~~~l~~l~~L~~L~Ls~n~l  230 (933)
                        ...+..-+.|++|+|++|   .+...    +...+..-+.|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence              134556677888888754   33432    344555667788888876643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.91  E-value=0.00093  Score=60.50  Aligned_cols=53  Identities=21%  Similarity=0.282  Sum_probs=25.6

Q ss_pred             EEEcCCCcCC-CCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCC
Q 002350          736 GLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYN  790 (933)
Q Consensus       736 ~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  790 (933)
                      .+|.++++|+ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4677777775 34554332  23444555555554433444444444444444433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.53  E-value=0.0027  Score=57.43  Aligned_cols=58  Identities=24%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             Ceeeccccccc-cccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcc
Q 002350          759 LALNLSNNSLS-GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG  818 (933)
Q Consensus       759 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  818 (933)
                      ..++-+++.++ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|+.|+|++|++.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            37888888887 35665432  468899999999987777778888888888877666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	933
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 8e-20
 Identities = 67/386 (17%), Positives = 116/386 (30%), Gaps = 30/386 (7%)

Query: 193 LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252
           L    +  L +  +   +     +L ++  L      +  S+   +  L +L  ++ S+N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 253 NFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL 312
               + PL +L     +        + T      N    +           L        
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 313 LHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSF--------SGILQLPKAKH 364
           L        D+S    + +       N       L    +                 AK 
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 365 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 424
             L  L  + N      P  +   L +L    ++ N  +     +   +  L+ LDL+ N
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLDEL---SLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 425 YFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLL 484
             S     S   G   L  L L  N       S    LT L +L    N          L
Sbjct: 252 QISNLAPLS---GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 485 SSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 544
              +L  L +  N +S   P  + + +  L+ L  + N +       L NL  +  L   
Sbjct: 307 --KNLTYLTLYFNNISDISP--VSSLTK-LQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 545 ENRLSGPIASSLNLSSVEHLSLQKNA 570
            N++S     + NL+ +  L L   A
Sbjct: 360 HNQISDLTPLA-NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 1e-15
 Identities = 68/415 (16%), Positives = 130/415 (31%), Gaps = 65/415 (15%)

Query: 413 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 472
           + E     L +   +  +SQ+ +     +  L       +         L  L  + F N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 473 NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN--------FSSELEILSMSKNHL 524
           N  +      L + T L  + ++NN ++   P              +   +I  +     
Sbjct: 76  NQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 525 EGNVPVQLNNLERLRILDISENRLSGPIASSLN----LSSVEHLSLQKNALNGLIPGELF 580
              + +  N +  +  L    +       + +     L+++  L     + N +    + 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 581 RSCKLV-TLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 639
                + +L   +N  S   P  I   +NL  L L GN L+      L  L  L  +DL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 249

Query: 640 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW 699
            N+ S   P      L+            KL + ++        L    +          
Sbjct: 250 NNQISNLAPLSGLTKLTEL----------KLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 700 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL 759
                                    I   SN+  +T L L  N ++   P  +  L  + 
Sbjct: 300 -------------------------ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 760 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 814
            L  +NN +S     S +NL  I  L   +N+++   P  L  L  ++   ++  
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 2e-13
 Identities = 62/397 (15%), Positives = 120/397 (30%), Gaps = 38/397 (9%)

Query: 126 VNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQ 185
           +      + V    S   L Q+  L              +  L +L  +    N++    
Sbjct: 25  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT 82

Query: 186 TNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLE 245
             + + +L ++   N +   I             L    I+      +L ++     S  
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 246 YLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLN 305
            +                  +   +   L+       +   +   +   ++  LT     
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE-- 200

Query: 306 GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHD 365
                          L  ++N++    P         L+ L L  N    I  L    + 
Sbjct: 201 --------------SLIATNNQISDITPLG---ILTNLDELSLNGNQLKDIGTLASLTN- 242

Query: 366 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY 425
            L  LD++ N      P +    L KL  + +  N      P     +  L+ L      
Sbjct: 243 -LTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNISP-----LAGLTALTNLELN 293

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 485
            +     S ++   +L  L L  NN      S   +LT+L+ L+F NN  S      L +
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522
            T++  L   +N +S   P  + N +  +  L ++  
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTR-ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 36/223 (16%)

Query: 72  CCHWQRVKCNATTGRVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTY 131
                 +  N  +   +   L N   L    +   + +++    L  L  L L+ N    
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLK- 232

Query: 132 DSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGI- 190
                   +L SL  L  L L +N   +     L+ L  L  L L  N+I       G+ 
Sbjct: 233 -----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT 285

Query: 191 ------------------CELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNG 232
                               LKNL  + L  N I    I+ + +LT+L+ L  ++N+++ 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD 343

Query: 233 SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLS 275
              S ++NLT++ +L   HN    + PL++L   +++  L L+
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTPLANL---TRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 34/361 (9%)

Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 520
           +L ++  L  +         DG+    +L  ++ SNN L+   P  + N +  L  + M+
Sbjct: 42  DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTK-LVDILMN 96

Query: 521 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 580
            N +    P+          L  ++     P+ +  NL+ +E  S   + ++ L      
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 640
           +              +     +  +           +  +      L +L  L  +  + 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDI----------SSNKVSDISVLAKLTNLESLIATN 206

Query: 641 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL 700
           N+ S   P      L         LNG++L           G+L +  +   +      +
Sbjct: 207 NQISDITPLGILTNLDELS-----LNGNQLKDI--------GTLASLTNLTDLDLANNQI 253

Query: 701 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 760
           S L   + + +  E++        I   + +  +T L+L+ NQ   E  S I  L+ +  
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ--LEDISPISNLKNLTY 311

Query: 761 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 820
           L L  N++S   P   S+L  ++ L  + NK++      L  L  ++  +  +N +S  T
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 821 P 821
           P
Sbjct: 368 P 368

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 6e-16
 Identities = 48/264 (18%), Positives = 86/264 (32%), Gaps = 14/264 (5%)

Query: 194 KNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN 253
            +   ++L+ N I        KNL  L  L + +N+++   P   + L  LE L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 254 FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLL 313
            +    L      +  E  +       +     N L    ++ LG      +G       
Sbjct: 91  LKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 314 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 373
               L Y+ ++   +    P  L    P L  L L  N  + +        + L  L +S
Sbjct: 148 GMKKLSYIRIADTNI-TTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 374 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG----- 428
            N+      +        L  + ++ N     +P    + K + ++ L  N  S      
Sbjct: 204 FNSISAV-DNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 429 GLSQSVVTGCFSLELLDLSNNNFE 452
                  T   S   + L +N  +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 42/267 (15%), Positives = 83/267 (31%), Gaps = 16/267 (5%)

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
           LP     +L L    +         +  +L  L L +NK+    P        KLE L L
Sbjct: 29  LPPD-TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYL 86

Query: 349 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPY 408
             N    + +        L   +      R  + + +      ++ +  +     G    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN--QMIVVELGTNPLKSSGIENG 144

Query: 409 SAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
           +   MK+LS + ++       ++        SL  L L  N       +    L  L  L
Sbjct: 145 AFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG-- 526
               N+ S      L ++  L+ L ++NN L         +    ++++ +  N++    
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY--IQVVYLHNNNISAIG 258

Query: 527 ----NVPVQLNNLERLRILDISENRLS 549
                 P           + +  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 8e-13
 Identities = 48/275 (17%), Positives = 86/275 (31%), Gaps = 13/275 (4%)

Query: 352 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 411
           S  G+ ++PK        LD+  N     +       L+ L  + +  N      P +  
Sbjct: 18  SDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 471
            + +L  L LS+N     L + +      L + +          F+  +N   +  L   
Sbjct: 77  PLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTN 134

Query: 472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 531
               SG           L  + I++  ++             L  L +  N +       
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 532 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 591
           L  L  L  L +S N +S     SL  +         N     +PG L     +  + L 
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250

Query: 592 DNTFSG------RIPHQINEHSNLRFLLLGGNHLQ 620
           +N  S         P    + ++   + L  N +Q
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 43/212 (20%), Positives = 68/212 (32%), Gaps = 4/212 (1%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
              LLDL NN        ++ NL  L  L   NN  S            L+ L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS 559
              +P  M     EL +       +  +V   LN +  + +             +   + 
Sbjct: 92  K-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 560 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 619
            + ++ +    +   IP  L  S  L  L+L  N  +      +   +NL  L L  N +
Sbjct: 151 KLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 620 QGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 651
                  L     L  + L+ NK         
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 51/266 (19%), Positives = 91/266 (34%), Gaps = 19/266 (7%)

Query: 119 LQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHW 178
              LDL  N  T           ++LK L  L+L +N            L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 179 NRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVI 238
           N+++     +    L+ L     E   +   +   L  +  +  L  +  + +G      
Sbjct: 89  NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAF 146

Query: 239 SNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLG 298
             +  L Y+ ++  N   +           L  L L   N    V   +    + L  LG
Sbjct: 147 QGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLD-GNKITKVDAASLKGLNNLAKLG 201

Query: 299 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-- 356
           L+  +++      L +  HL+ L L++NKLV         ++  ++V+ L NN+ S I  
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGS 259

Query: 357 ----LQLPKAKHDFLHHLDISCNNFR 378
                     K      + +  N  +
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 12/248 (4%)

Query: 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 634
           +P +L        L+L++N  +           NL  L+L  N +    P     L KL 
Sbjct: 25  VPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 635 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 694
            + LS+N+    +P      L      ++ +   + +         F  L          
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV--------FNGLNQMIVVELGT 133

Query: 695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 754
              +            +++                    +T L L  N++T    + +  
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193

Query: 755 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 814
           L  +  L LS NS+S     S +N   +  L ++ NKL  ++P  L    ++ +  +  N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 252

Query: 815 NLSGRTPD 822
           N+S    +
Sbjct: 253 NISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)

Query: 582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
            C L  +   D     ++P  +    +   L L  N +          L+ L  + L  N
Sbjct: 9   QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 642 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS 701
           K S   P  FA ++         L  SK    EL E++           N +  + + + 
Sbjct: 66  KISKISPGAFAPLVKLER-----LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 702 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAL 761
               +  + E         +  E      + +++ + ++   +T  IP  +    ++  L
Sbjct: 121 NGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTEL 176

Query: 762 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
           +L  N ++     S   L  +  L +S+N ++      L     L   +++ N L     
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 822 DKGQFATFDESSYRGNP 838
                          N 
Sbjct: 237 GLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 25/121 (20%), Positives = 40/121 (33%)

Query: 734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 793
              LDL  N++T     D   L+ +  L L NN +S   P +F+ L  +E L +S N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 794 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLIQQKYSRTL 853
                    L  L +       +     +        E       S        +  + L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 854 K 854
            
Sbjct: 153 S 153

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 9e-16
 Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 11/269 (4%)

Query: 533 NNLERLRILDISENRLSG--PIASSL-NLSSVEHLSLQKNA-LNGLIPGELFRSCKLVTL 588
               R+  LD+S   L    PI SSL NL  +  L +     L G IP  + +  +L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 589 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 648
            +     SG IP  +++   L  L    N L G +P  +  L  L  +    N+ SG+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 649 PCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 708
             + +            N  +L                + S N + G    L   +K   
Sbjct: 167 DSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 709 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL 768
                +   A        + +        DL  N++ G +P  + QL+ + +LN+S N+L
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGL----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 769 SGSIPESFSNLKMIESLDISYNKLTGQIP 797
            G IP+   NL+  +    + NK     P
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 51/269 (18%), Positives = 95/269 (35%), Gaps = 10/269 (3%)

Query: 211 ITCLKN--LTRLKILDISSNQLNG--SLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANH 266
           + C  +    R+  LD+S   L     +PS ++NL  L +L +   N        ++A  
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 267 SKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN 326
           ++L  L ++   N      +       L+ L  +   L+G+ P  +    +L  +    N
Sbjct: 101 TQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 327 KLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMG 386
           ++ G  P      +     + +  N  +G +    A  +                     
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 387 VILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 446
               + +++  +   F+          K L+ LDL  N   G L Q + T    L  L++
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVG---LSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNV 275

Query: 447 SNNNFEGQFFSEYMNLTRLRHLYFENNNF 475
           S NN  G+   +  NL R     + NN  
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.5 bits (176), Expect = 3e-14
 Identities = 52/255 (20%), Positives = 80/255 (31%), Gaps = 4/255 (1%)

Query: 316 YHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 374
           Y +  LDLS   L   +P    L N P L  L +   +       P        H     
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 375 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 434
           +        +    ++ L+ +D S N   G +P S   +  L  +    N  SG +  S 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 435 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 494
            +       + +S N   G+    + NL         N              +      I
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---FGSDKNTQKI 226

Query: 495 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 554
                S          S  L  L +  N + G +P  L  L+ L  L++S N L G I  
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 555 SLNLSSVEHLSLQKN 569
             NL   +  +   N
Sbjct: 287 GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 9e-13
 Identities = 59/266 (22%), Positives = 94/266 (35%), Gaps = 13/266 (4%)

Query: 581 RSCKLVTLNLRDNTFSGR--IPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMD 637
           ++ ++  L+L          IP  +     L FL +GG + L GPIP  + +L +L  + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 638 LSRNKFSGSIPP--CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG 695
           ++    SG+IP        L     S + L+G+   S      +   +   NR S  +  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 696 MWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQL 755
            +   S L           +  +          +  N           +     S +   
Sbjct: 168 SYGSFSKLFTS--------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 756 QAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNN 815
                      +            K +  LD+  N++ G +P  LT L FL   NVS+NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 816 LSGRTPDKGQFATFDESSYRGNPSLC 841
           L G  P  G    FD S+Y  N  LC
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 2e-12
 Identities = 67/358 (18%), Positives = 109/358 (30%), Gaps = 73/358 (20%)

Query: 28  CLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCH--WQRVKCNATTG 85
           C   ++ ALLQIK    +        + LSSW+         +DCC+  W  V C+  T 
Sbjct: 3   CNPQDKQALLQIKKDLGN-------PTTLSSWLPT-------TDCCNRTWLGVLCDTDTQ 48

Query: 86  RVMQLSLKNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLK 145
                                            + +LDLS         +    SL +L 
Sbjct: 49  TY------------------------------RVNNLDLSGLNLPKPYPIP--SSLANLP 76

Query: 146 QLKILVLGHNY-FDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERN 204
            L  L +G        I   +  L  L  L +    + G+  +      K L  ++   N
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYN 135

Query: 205 FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA 264
            +   L   + +L  L  +    N+++G++P    + + L        N        + A
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 265 NHSKLEGL---------------------LLSTRNNTLHVKTENWLPTSQLIVLGLTKCN 303
           N +                           +    N+L         +  L  L L    
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 304 LNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPK 361
           + G+ P  L     L  L++S N L G  P     N  + +V    NN       LP 
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 66/303 (21%), Positives = 108/303 (35%), Gaps = 27/303 (8%)

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
           N ++ G+L     +   +++LD+S  N     P                       IP S
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-----------------------IPSS 71

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469
              +  L+ L +       G     +     L  L +++ N  G        +  L  L 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 529
           F  N  SG +   + S  +L  +    N +SG IP   G+FS     +++S+N L     
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKI 190

Query: 530 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 589
                   L  +D+S N L G  +                       G++  S  L  L+
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250

Query: 590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF--SGSI 647
           LR+N   G +P  + +   L  L +  N+L G IP Q   LQ+  +   + NK      +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

Query: 648 PPC 650
           P C
Sbjct: 310 PAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 49/256 (19%), Positives = 80/256 (31%), Gaps = 50/256 (19%)

Query: 445 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK--IKDGLLSSTSLQVLDISNNMLSGH 502
           D  N  + G          R+ +L     N      I   L +   L  L I        
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 503 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSV 561
                    ++L  L ++  ++ G +P  L+ ++ L  LD S N LSG +  S+ +L ++
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 562 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDN---------------------------- 593
             ++   N ++G IP       KL T                                  
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 594 -------------------TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 634
                                      ++    NL  L L  N + G +P  L QL+ L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 635 MMDLSRNKFSGSIPPC 650
            +++S N   G IP  
Sbjct: 272 SLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 7e-04
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 727 NGSNVNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNN-SLSGSIPESFSNLKMIE 783
             +   RV  LDLS   L     IPS +  L  +  L +    +L G IP + + L  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 784 SLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 822
            L I++  ++G IP  L+ +  L   + SYN LSG  P 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 5/257 (1%)

Query: 341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN 400
              + + L  N  S +          L  L +  N            +            
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 401 CFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 460
                 P +   +  L  L L        L   +  G  +L+ L L +N  +      + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 520
           +L  L HL+   N  S   +       SL  L +  N ++   PH   +       L + 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-MTLYLF 209

Query: 521 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 580
            N+L       L  L  L+ L +++N       +    + ++      + +   +P  L 
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL- 268

Query: 581 RSCKLVTLNLRDNTFSG 597
               L    L  N   G
Sbjct: 269 AGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 8/262 (3%)

Query: 289 LPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLL 348
           +P +    + L    ++           +L  L L  N L               ++ L 
Sbjct: 30  IPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 349 KNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPY 408
            N     +          LH L +       +L   +   L  L Y+ +  N  +     
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 409 SAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 468
           +  ++  L+ L L  N  S  + +    G  SL+ L L  N         + +L RL  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 469 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNV 528
           Y   NN S    + L    +LQ L +++N              + L+    S + +  ++
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 529 PVQLNNLERLRILDISENRLSG 550
           P +L       +  ++ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 6e-10
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 1/198 (0%)

Query: 463 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522
              + ++   N  S        +  +L +L + +N+L+          +   ++      
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 523 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFR 581
            L    P   + L RL  L +    L          L+++++L LQ NAL  L       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
              L  L L  N  S           +L  LLL  N +    P     L +L  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 642 KFSGSIPPCFANVLSWRV 659
             S       A + + + 
Sbjct: 212 NLSALPTEALAPLRALQY 229

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 6e-10
 Identities = 43/249 (17%), Positives = 78/249 (31%), Gaps = 26/249 (10%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
           + + + L  N       + +     L  L+  +N  +            L+ LD+S+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 500 SGHIPHWMGNFSSELEILSMS------------------------KNHLEGNVPVQLNNL 535
              +     +    L  L +                          N L+        +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 536 ERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT 594
             L  L +  NR+S     +   L S++ L L +N +  + P       +L+TL L  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 595 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 654
            S      +     L++L L  N               L     S ++   S+P   A  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 655 LSWRVGSDD 663
              R+ ++D
Sbjct: 272 DLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 58/310 (18%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
             + Q + +  N +S           +   +   S      +           ++     
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 546 NRLSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 604
            +L     ++ + L  +  L L +  L  L PG       L  L L+DN           
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 605 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 664
           +  NL  L L GN +          L  L  + L +N+ +   P  F ++          
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT----- 205

Query: 665 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 724
                                    +N +  +                            
Sbjct: 206 ---------------------LYLFANNLSALPTE------------------------- 219

Query: 725 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 784
               + +  +  L L+ N    +  +       +     S++ +  S+P+  +   +   
Sbjct: 220 --ALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL--- 273

Query: 785 LDISYNKLTG 794
             ++ N L G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 49/312 (15%), Positives = 94/312 (30%), Gaps = 59/312 (18%)

Query: 509 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQK 568
              +  + + +  N +             L IL +  N L+   A++    ++       
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 569 NA--LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 626
           +   L  + P       +L TL+L         P      + L++L L  N LQ    D 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 627 LCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 686
              L  L  + L  N+ S      F  + S                      ++   L  
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHS----------------------LDRLLLHQ 186

Query: 687 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG 746
           NR ++     +R L                                R+  L L  N L+ 
Sbjct: 187 NRVAHVHPHAFRDL-------------------------------GRLMTLYLFANNLSA 215

Query: 747 EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 806
                +  L+A+  L L++N        +      ++    S +++   +P +L   +  
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK 274

Query: 807 SIFNVSYNNLSG 818
               ++ N+L G
Sbjct: 275 ---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 43/263 (16%), Positives = 76/263 (28%), Gaps = 11/263 (4%)

Query: 93  KNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVL 152
             + R+    +    +  + F     L  L L  N+       A        +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 153 GHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLIT 212
                D + F  L  L +L         +           L  L  + L+ N + +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQDNALQALPDD 147

Query: 213 CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL 272
             ++L  L  L +  N+++         L SL+ L L  N    + P +       +   
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL- 206

Query: 273 LLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 332
                NN   + TE   P   L  L L             L  + L+    S +++  + 
Sbjct: 207 -YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSEVPCSL 264

Query: 333 PTWLLRNNPKLEVLLLKNNSFSG 355
           P  L       ++  L  N   G
Sbjct: 265 PQRLAG----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 5/206 (2%)

Query: 637 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGM 696
            L  N+ S      F    +  +        +++++           L  + ++      
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 697 WRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 756
                 L +   +     ++              +  +  L L  N L          L 
Sbjct: 98  PATFHGLGRLHTLH----LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 757 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 816
            +  L L  N +S     +F  L  ++ L +  N++    P     L  L    +  NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 817 SGRTPDKGQFATFDES-SYRGNPSLC 841
           S    +        +      NP +C
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVC 239

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (148), Expect = 2e-10
 Identities = 51/456 (11%), Positives = 109/456 (23%), Gaps = 25/456 (5%)

Query: 195 NLFEMNLERNFIG-SPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDL 249
           ++  ++++   +  +     L  L + +++ +    L       + S +    +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 250 SHNNF--EGMFPLSSL--ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLN 305
             N     G+  +         K++ L L     T             L     T   L+
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP----TLQELH 118

Query: 306 GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHD 365
            S          L    L   +           +        L +   +          +
Sbjct: 119 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

Query: 366 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY 425
              +        +G       +   KL    ++ +         A +     L   S   
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 426 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 485
              G+++           L        G       +L R+          S    +    
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
              L    +                 +       S    +    ++L             
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL---EDA 355

Query: 546 NRLSGPIASSLNLSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGRIPH 601
                        S +  L L    ++      +   L  +  L  L+L +N        
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 602 QI-----NEHSNLRFLLLGGNHLQGPIPDQLCQLQK 632
           Q+          L  L+L   +    + D+L  L+K
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 5e-08
 Identities = 55/454 (12%), Positives = 115/454 (25%), Gaps = 25/454 (5%)

Query: 367 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLS 422
           +  LDI C          +  +LQ+   + +           +I  +      L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 423 RNYFSG----GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK 478
            N         + Q + T    ++ L L N    G       +  R      E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 479 IKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERL 538
           + D  L      +LD    +    + +   + +S   + S+ +   +       NN    
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 598
             + +    L         L          N  +         S + + L        G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 599 IPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 658
                        L        G        L ++     S  + S +            
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 659 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 718
             +         +              +  S          L     R       E+   
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 719 MKNRYEIYNGSNVNRVTGLDLSCNQLTGE----IPSDIGQLQAILALNLSNNSLSGSIPE 774
           +            + +  L L+   ++      + + +    ++  L+LSNN L  +   
Sbjct: 364 LGQ--------PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 775 SFS-----NLKMIESLDISYNKLTGQIPPQLTAL 803
                      ++E L +     + ++  +L AL
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 8e-08
 Identities = 60/444 (13%), Positives = 117/444 (26%), Gaps = 16/444 (3%)

Query: 110 MSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLP 169
             L   L++ Q + L     T         +LR    L  L L  N   D     +    
Sbjct: 20  AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 170 SLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQ 229
              +  +    ++        C + +     L            L +     + +   + 
Sbjct: 80  QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 139

Query: 230 LNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWL 289
                   +   +          +     P       S  +      R     +K     
Sbjct: 140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 199

Query: 290 PTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 349
             +  +       +        +  +  L+ L L  NKL       L          L  
Sbjct: 200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 259

Query: 350 NNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS 409
              +   +              +       K     G  L       + +   E      
Sbjct: 260 LWIWECGIT----AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 315

Query: 410 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 469
           +  +K  S      ++FS  L+Q+       +    L +              + LR L+
Sbjct: 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 375

Query: 470 FENNNFSGK----IKDGLLSSTSLQVLDISNNMLSG----HIPHWMGNFSSELEILSMSK 521
             + + S      +   LL++ SL+ LD+SNN L       +   +      LE L +  
Sbjct: 376 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 435

Query: 522 NHLEGNVPVQLNNLER----LRIL 541
            +    +  +L  LE+    LR++
Sbjct: 436 IYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 63/516 (12%), Positives = 125/516 (24%), Gaps = 80/516 (15%)

Query: 118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILH 177
           ++QSLD+     +                           D      L  L     + L 
Sbjct: 3   DIQSLDIQCEELS---------------------------DARWAELLPLLQQCQVVRLD 35

Query: 178 WNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSV 237
              +    T                       + + L+    L  L++ SN+L       
Sbjct: 36  DCGL----TEARC-----------------KDISSALRVNPALAELNLRSNELGDVGVHC 74

Query: 238 I-----SNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTS 292
           +     +    ++ L L +    G       +    L           LH+         
Sbjct: 75  VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL------PTLQELHLSDNLLGDAG 128

Query: 293 QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS 352
             ++               L +             ++   P +        ++       
Sbjct: 129 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 188

Query: 353 FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKN--CFEGNIPYSA 410
               L+    + + L        +   +    +      L  + +  N     G      
Sbjct: 189 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 248

Query: 411 GEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF 470
           G +   S L     +  G  ++     C  L   +                   L     
Sbjct: 249 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 308

Query: 471 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 530
           E       +     S T+      S+ +        +   ++ LE   + +         
Sbjct: 309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC-----QG 363

Query: 531 QLNNLERLRILDISENRLSGPIASSL-----NLSSVEHLSLQKNALNGLIPGELFRS--- 582
                  LR+L +++  +S    SSL        S+  L L  N L      +L  S   
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 583 --CKLVTLNLRDNTFSGRIPHQINE----HSNLRFL 612
             C L  L L D  +S  +  ++        +LR +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 737 LDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSG----SIPESFSNLKMIESLDISYNK 791
           LD+ C +L+    +++   LQ    + L +  L+      I  +      +  L++  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 792 LTGQIPPQLTALNFLSIFNVSYNNLSG 818
           L       +          +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 54/444 (12%), Positives = 107/444 (24%), Gaps = 34/444 (7%)

Query: 220 LKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLLS 275
           ++ LDI   +L+ +    ++  L   + + L            +SS L  +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 276 TRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW 335
             +N L     + +        GL   +              ++ L L +  L G     
Sbjct: 64  --SNELGDVGVHCVLQ------GLQTPSCK------------IQKLSLQNCCLTGAGCGV 103

Query: 336 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYM 395
           L      L  L   + S + +                           ++     + +  
Sbjct: 104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 163

Query: 396 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 455
            +        +  S  ++ E  +  L +           +         D   +      
Sbjct: 164 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 223

Query: 456 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 515
               +    L      +   +      L  S+ L+ L I    ++      +       E
Sbjct: 224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 283

Query: 516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 575
            L                 L    +    +       + S   +   H S      + L 
Sbjct: 284 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS------SVLA 337

Query: 576 PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQG----PIPDQLCQLQ 631
                   ++    L D              S LR L L    +       +   L    
Sbjct: 338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 397

Query: 632 KLAMMDLSRNKFSGSIPPCFANVL 655
            L  +DLS N    +        +
Sbjct: 398 SLRELDLSNNCLGDAGILQLVESV 421

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 30/298 (10%)

Query: 517 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP 576
           L ++  +L  +V  +L +   +       + +  P+A   +   V+H+ L  + +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 577 GELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLG--GNHLQGPIPDQLCQLQKL 633
             +   C  L  L+L     S  I + + ++SNL  L L       +  +   L    +L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 634 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 693
             ++LS            A        +   L+G + N  + D         N    +  
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 694 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS-CNQLTGEIPSDI 752
             +                                  +N +  L LS C  +  E   ++
Sbjct: 184 DSVMLKNDC----------------------FQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 753 GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 810
           G++  +  L +      G++      L     L I+ +  T    P +       I+ 
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIGNKKNQEIWG 276

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 13/271 (4%)

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
              LH      L +  +I     +  ++    +     + ++++DLS++ +  +    +L
Sbjct: 9   GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGIL 67

Query: 338 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI-SCNNFRGKLPHNMGVILQKLMYMD 396
               KL+ L L+    S  +    AK+  L  L++  C+ F       +     +L  ++
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 397 I------SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 450
           +      ++   +  + + +  + +L+L    +N     LS  V      + L    +  
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 451 FEGQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 509
            +   F E+  L  L+HL      +   +    L    +L+ L +   +  G +      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL---- 243

Query: 510 FSSELEILSMSKNHLEGNVPVQLNNLERLRI 540
               L  L ++ +H        + N +   I
Sbjct: 244 LKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 39/286 (13%), Positives = 85/286 (29%), Gaps = 28/286 (9%)

Query: 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 598
           + LD++   L   +   L    V      ++ ++  +  E F   ++  ++L ++     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVS 61

Query: 599 IPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSW 657
             H I    S L+ L L G  L  PI + L +   L  ++LS                  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 658 RVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 717
           R+                          +     T   +   ++ + +            
Sbjct: 122 RL---------------------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 718 AMKNRYEIYNGSNVNRVTGLDLS-CNQLTGEIPSDIGQLQAILALNLSN-NSLSGSIPES 775
            ++             +  LDLS    L  +   +  QL  +  L+LS    +       
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 776 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 821
              +  +++L +      G +     AL  L    ++ ++ +    
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 444 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 503
           LDL+  N         ++   +       +     +     S   +Q +D+SN+++    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVST 62

Query: 504 PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD 542
            H + +  S+L+ LS+    L   +   L     L  L+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 34/254 (13%), Positives = 66/254 (25%), Gaps = 33/254 (12%)

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 279
           +       + ++  L    S    ++++DLS++  E       L+  SKL+         
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQ--------- 74

Query: 280 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPT----- 334
                            L L    L+    + L    +L  L+LS       F       
Sbjct: 75  ----------------NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 335 --WLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKL 392
               L                   +         L+      N  +  L   +      +
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 393 MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 452
                     + +      ++  L  L LSR Y     +   +    +L+ L +     +
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 453 GQFFSEYMNLTRLR 466
           G        L  L+
Sbjct: 239 GTLQLLKEALPHLQ 252

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 221 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 280
           ++L ++   L  ++   +  L  + +LDLSHN    + P       + L  L +   ++ 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53

Query: 281 LHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVG--NFPTWLL 337
                +      +L  L L    L   +    L+    L  L+L  N L         L 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 338 RNNPKLEVLL 347
              P +  +L
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWN 179
           + L L+    T          L  L  +  L L HN     + +    L +L  L +   
Sbjct: 1   RVLHLAHKDLT------VLCHLEQLLLVTHLDLSHN----RLRALPPALAALRCLEVLQA 50

Query: 180 RIEGSQTNQGICELKNLFEMNLERNFIGS-PLITCLKNLTRLKILDISSNQL---NGSLP 235
                +   G+  L  L E+ L  N +     I  L +  RL +L++  N L    G   
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 236 SVISNLTSLEYL 247
            +   L S+  +
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 539 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR 598
           R+L ++   L+  +     L  V HL L  N L  L P  L     L  L   DN     
Sbjct: 1   RVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 599 IPHQINEHSNLRFLLLGGNHLQG-PIPDQLCQLQKLAMMDLSRNKFSG 645
                      + LLL  N LQ       L    +L +++L  N    
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 345 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG 404
           VL L +   + +  L +     + HLD+S N  R   P      L+ L  +  S N  E 
Sbjct: 2   VLHLAHKDLTVLCHLEQLLL--VTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALEN 57

Query: 405 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 453
               +     +   L L  N      +   +  C  L LL+L  N+   
Sbjct: 58  VDGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 24/104 (23%)

Query: 737 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP---------------------ES 775
           L L+   LT  +   + QL  +  L+LS+N L    P                     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 776 FSNLKMIESLDISYNKLTG-QIPPQLTALNFLSIFNVSYNNLSG 818
            +NL  ++ L +  N+L        L +   L + N+  N+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 516 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI 575
           +L ++   L   V   L  L  +  LD+S NRL     +   L  +E L    NAL  + 
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 576 PGELFRSCKLVTLNLRDNTF-SGRIPHQINEHSNLRFLLLGGNHLQG 621
                   +   L L +N          +     L  L L GN L  
Sbjct: 60  GVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 50/331 (15%), Positives = 97/331 (29%), Gaps = 22/331 (6%)

Query: 487 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI------ 540
                L+++N  LS  +P    +    LE L  S N L   +P    +L+ L +      
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 541 -LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 599
            L      L     S+  L  +  L          +     +    +  +L         
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 600 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 659
             ++ E  NL FL                 L   +++  +              + +   
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 660 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 719
            ++ +     L        +    L +                +    +           
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 720 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL 779
            +            +  L++S N+L  E+P+   +L+    L  S N L+  +PE   NL
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNL 326

Query: 780 KMIESLDISYNKLTGQIPPQLTALNFLSIFN 810
           K    L + YN L  + P    ++  L + +
Sbjct: 327 K---QLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 56/333 (16%), Positives = 106/333 (31%), Gaps = 21/333 (6%)

Query: 213 CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSS-----LANHS 267
           CL    +   L++++  L+ SLP +  +L   E L  S N+   +  L       L +++
Sbjct: 35  CLDR--QAHELELNNLGLS-SLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNN 88

Query: 268 KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 327
            L+ L            + N L     +        ++               L+     
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 328 LVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV 387
                    L+N P L  +   NNS   +  LP +    +   +I       +    +  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 388 ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 447
           I      +    +        +  +     L +L ++     +S+++ +G   L      
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 448 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWM 507
            N    +  S       L  L   NN    ++         L+ L  S N L+  +P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELP 323

Query: 508 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRI 540
            N    L+ L +  N L    P    ++E LR+
Sbjct: 324 QN----LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 49/311 (15%), Positives = 89/311 (28%), Gaps = 18/311 (5%)

Query: 514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG 573
              L ++   L  ++P    +LE L     S N L+       +L S+   +    AL+ 
Sbjct: 40  AHELELNNLGLS-SLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 574 LIPGELFRSCKLVTLNLRDNTF------SGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 627
           L P   +       L                + +   +        L          ++L
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 628 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 687
            +LQ L  +       +         +    + + + +         L       +  N 
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 688 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 747
             +            +      D     +            S ++ +       N  + E
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 748 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLS 807
           I S      ++  LN+SNN L   +P     L   E L  S+N L  ++P     L  L 
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL- 329

Query: 808 IFNVSYNNLSG 818
             +V YN L  
Sbjct: 330 --HVEYNPLRE 338

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 32/181 (17%), Positives = 47/181 (25%), Gaps = 7/181 (3%)

Query: 317 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 376
               L LS N L   F    L    +L  L L     +            L  L     +
Sbjct: 32  DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT-----KLQVDGTLPVLGTLDLS 85

Query: 377 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 436
                   +       + +         ++P  A            +      L   ++T
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 437 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN 496
               LE L L+NNN           L  L  L  + N+    I  G   S  L    +  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 497 N 497
           N
Sbjct: 205 N 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 37/243 (15%), Positives = 61/243 (25%), Gaps = 37/243 (15%)

Query: 209 PLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 268
           P+      +     ++     L  +LP  +        L LS N     F L++L  +++
Sbjct: 2   PICEV-SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTR 56

Query: 269 LEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL 328
           L  L                              NL+ +    L     L  L       
Sbjct: 57  LTQL------------------------------NLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 329 VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI 388
                  LL        +L  + +    L L   +            N    LP  +   
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 389 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 448
             KL  + ++ N            ++ L  L L  N            G   L    L  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPFAFLHG 204

Query: 449 NNF 451
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 12/212 (5%)

Query: 581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 640
           +    + +N      +  +P  +    +   L L  N L       L    +L  ++L R
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 641 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL 700
            + +         VL     S + L    L    L          N  +S  +  +    
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 701 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 760
              E     +E   +   +          ++        + N LT      +  L+ +  
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSL--------ANNNLTELPAGLLNGLENLDT 176

Query: 761 LNLSNNSLSGSIPESFSNLKMIESLDISYNKL 792
           L L  NSL  +IP+ F    ++    +  N  
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 42/182 (23%), Positives = 57/182 (31%), Gaps = 6/182 (3%)

Query: 440 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 499
              +L LS N       +  M  TRL  L  +    +    DG L       L  +    
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 500 SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS 559
              +   +   +       +S N L       L  L  L+ L +  N L       L  +
Sbjct: 92  LPLLGQTLPALTVL----DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 560 SVEHL-SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 618
                 SL  N L  L  G L     L TL L++N+    IP        L F  L GN 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 619 LQ 620
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 40/181 (22%), Positives = 60/181 (33%), Gaps = 4/181 (2%)

Query: 463 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 522
                L+   N         L+  T L  L++            +      L  L +S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHN 87

Query: 523 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRS 582
            L+    +         +        S P+ +   L  ++ L L+ N L  L PG L  +
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 583 CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 642
            KL  L+L +N  +      +N   NL  LLL  N L   IP        L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 643 F 643
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 7/193 (3%)

Query: 461 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMS 520
            +     +  +  N +  +   L       +L +S N+L       +  ++  L  L++ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLD 63

Query: 521 KNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF 580
               E         L  L  LD+S N+L         L ++  L +  N L  L  G L 
Sbjct: 64  --RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 640
              +L  L L+ N      P  +     L  L L  N+L       L  L+ L  + L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 641 NKFSGSIPPCFAN 653
           N    +IP  F  
Sbjct: 182 NSLY-TIPKGFFG 193

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 729 SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 788
           S V     ++     LT  +P D+ +      L+LS N L      +      +  L++ 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 789 YNK 791
             +
Sbjct: 64  RAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 12/175 (6%)

Query: 93  KNTTRLNYPYDWFPLLNMSLFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVL 152
           K+TT L+   +     +++   P   L  L+L     T          L +L        
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD------- 83

Query: 153 GHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLIT 212
             ++        L       T++        S     +  L  L E+ L+ N + +    
Sbjct: 84  -LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 213 CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF----EGMFPLSSL 263
            L    +L+ L +++N L      +++ L +L+ L L  N+     +G F    L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 49/334 (14%), Positives = 87/334 (26%), Gaps = 20/334 (5%)

Query: 220 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF--EGMFPLSS-LANHSKLEGLLLST 276
           LK+  I++     S+ +V+    S++ + LS N    E    LS  +A+   LE    S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS- 67

Query: 277 RNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL 336
              T  VK E       L+   L    L+             +   +             
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 337 LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH--LDISCNNFRGKLPHNMGVILQKLMY 394
           L NN        K       L + K   +      +    N              Q    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 395 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 454
           +   K    G  P     +    L              +      S   + L +     +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 455 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG----HIPHWMGNF 510
                  L+        +           L +  LQ L +  N +       +   +   
Sbjct: 248 LGLNDCLLSARGAAAVVDAF-------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 511 SSELEILSMSKNHL--EGNVPVQLNNLERLRILD 542
             +L  L ++ N    E +V  ++  +   R   
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 40/295 (13%), Positives = 78/295 (26%), Gaps = 26/295 (8%)

Query: 208 SPLITCLKNLTRLKILDISSNQLNG----SLPSVISNLTSLEYLDLSHNNFEGMFPLSSL 263
             +   L     +K + +S N +       L   I++   LE  + S      +      
Sbjct: 21  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 264 ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL 323
           A    L+ LL   + +T+ +    + PT+Q  ++     +    +     +    +    
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 324 SHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI------------LQLPKAKHDFLHHLD 371
               L         +N P L  ++   N                   L   K        
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 372 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 431
               +   +       +    +  +   +     +  +      L  L L+    S   +
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 432 QSVVTGCF-----SLELLDLSNNNFEGQFFSE-----YMNLTRLRHLYFENNNFS 476
            +VV          L+ L L  N  E              +  L  L    N FS
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 29/293 (9%), Positives = 56/293 (19%), Gaps = 28/293 (9%)

Query: 307 SYPDFLLHQYHLKYLDLSHNKLVGNFPTWL---LRNNPKLEVLLLKNNSFSGILQLPKAK 363
           S    LL    +K + LS N +      WL   + +   LE+    +     +       
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 364 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR 423
              L    + C         +          +    +                       
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 424 NYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGL 483
                 L+ +            +   N       +    T   H                
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 484 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNN--------- 534
                L         L                 L+++         + LN+         
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 535 ----------LERLRILDISENRLSGPIASSL------NLSSVEHLSLQKNAL 571
                        L+ L +  N +      +L       +  +  L L  N  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 17/192 (8%)

Query: 193 LKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 252
                + NL++  +   +      L  +  +  +++ +       I  L ++  L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 253 NFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFL 312
               + PL++L N   L       ++ +     +     S           L        
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 313 LHQYHLKYLDLSHNKLVGNFPTWL-----------LRNNPKLEVLLLKNNSFSGILQLPK 361
           L+  + K  D++    +    T             L    KL+ L L  N  S +  L  
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198

Query: 362 AKHDFLHHLDIS 373
            K+  L  L++ 
Sbjct: 199 LKN--LDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 19/205 (9%)

Query: 292 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 351
           ++ I   L K ++  +     L+   +  +  +++ +        ++  P +  L L  N
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKSVQG---IQYLPNVTKLFLNGN 78

Query: 352 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAG 411
             + I  L  A    L  L +  N  +          L+ L       +   G +     
Sbjct: 79  KLTDIKPL--ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 412 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 471
           E   L    ++       L++         ++ D+               LT+L++LY  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----------PLAGLTKLQNLYLS 186

Query: 472 NNNFSGKIKDGLLSSTSLQVLDISN 496
            N+ S      L    +L VL++ +
Sbjct: 187 KNHISDL--RALAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 199 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 258
           + L    I         N  R + LD+   ++   + ++ + L   + +D S N    + 
Sbjct: 1   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 57

Query: 259 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHL 318
               L    K   +  +          +     ++LI+   +   L    P   L     
Sbjct: 58  GFPLLRR-LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 319 KYLDLSHNKLVGNFPTWLLRNNPKLEVL 346
             +  +      ++  +++   P++ VL
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 531 QLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 590
           Q  N  R R LD+   ++         L   + +    N +  L    L R   L TL +
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR--LKTLLV 70

Query: 591 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 650
            +N              +L  L+L  N L            K             +    
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 651 FANVLSWRVGSDDVLNGSKLNSPELDE 677
              V+ ++V    VL+  K+   E  E
Sbjct: 131 RLYVI-YKVPQVRVLDFQKVKLKERQE 156

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 211 ITCLKNLTRLKILDISSNQLNGSLPSV------ISNLTSLEYLDLSHNNFEGMFPLSSLA 264
           I   +    +   +    +L+G +P +      +S L + ++L LS NN E +  LS + 
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70

Query: 265 NHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLS 324
           N       L         +K    L      +  L       +    +    +L+ L +S
Sbjct: 71  N-------LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123

Query: 325 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 378
           +NK+        L    KLE LLL  N      +   A  ++   +     N +
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 735 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLT 793
           +GL  + +    +    +   + +  L + N      +       L  + +L I  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 794 GQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLC 841
              P        LS  N+S+N L   +    Q  +  E    GNP  C
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 30/236 (12%), Positives = 58/236 (24%), Gaps = 6/236 (2%)

Query: 582 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 641
            C       +++  +  IP  +    N   L      L+            L  +++S+N
Sbjct: 7   HCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 642 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS 701
                I     + L            + L       +          S+  +  +     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-H 122

Query: 702 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAL 761
            +     +   ++    +                 L L+ N +           Q     
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 762 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 817
              NN+L     + F        LDIS  ++       L  L  L   +    NL 
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 36/205 (17%), Positives = 68/205 (33%)

Query: 218 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 277
                L     +L        S    LE +++S N+   +      +N  KL  + +   
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 278 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 337
           NN L++  E +     L  L ++   +        +H      LD+  N  +        
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 338 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 397
                  V+L  N +    +         L  L++S NN   +LP+++       + +DI
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 398 SKNCFEGNIPYSAGEMKELSLLDLS 422
           S+        Y    +K+L      
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 10/81 (12%), Positives = 21/81 (25%)

Query: 172 CTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLN 231
             ++           N      +       + N +           +   ILDIS  +++
Sbjct: 155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 214

Query: 232 GSLPSVISNLTSLEYLDLSHN 252
                 + NL  L      + 
Sbjct: 215 SLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 19/224 (8%), Positives = 51/224 (22%), Gaps = 6/224 (2%)

Query: 575 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 634
           IP +L R+   + L               +   +L  + +  N +   I   +       
Sbjct: 23  IPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 635 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 694
                    +       A      +    + + + +       +I           + + 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLI-SNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 695 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 754
                 ++    +     + +             +            N L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 755 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP 798
               + L++S   +         NLK + +      K   ++P 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 5/159 (3%)

Query: 486 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 545
                 L +++N L       +      L  L + +N L G  P        ++ L + E
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 546 NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 604
           N++          L  ++ L+L  N ++ ++PG       L +LNL  N F+        
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 605 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 643
               LR   L G   +   P    +++ + + DL  ++F
Sbjct: 148 -AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 213 CLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGL 272
            L NL++L  L    N+++   P  +++L +L  + L +N    + PL++    S L  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANT---SNLFIV 222

Query: 273 LLS 275
            L+
Sbjct: 223 TLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 177 HWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPS 236
                        +  L  L  +  + N I    I+ L +L  L  + + +NQ++   P 
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP- 212

Query: 237 VISNLTSLEYLDLSH 251
            ++N ++L  + L++
Sbjct: 213 -LANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	933
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.23

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.5e-36  Score=325.95  Aligned_cols=295  Identities=26%  Similarity=0.376  Sum_probs=189.1

Q ss_pred             CChHHHHHHHHHhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCcc--cceeEecCCC--CcEEEEecCCCCCCCCCC
Q 002350           27 ACLETERTALLQIKSFFISASDIEYKDSILSSWVDDDDDDGMPSDCCH--WQRVKCNATT--GRVMQLSLKNTTRLNYPY  102 (933)
Q Consensus        27 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~~~C~--w~gv~c~~~~--~~V~~l~l~~~~~l~l~~  102 (933)
                      -|.++||+||++||+++.++       ..+++| ..+      +|||.  |.||+|+..+  +||++|+|++...   +|
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~-------~~l~sW-~~~------~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l---~g   64 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP-------TTLSSW-LPT------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL---PK   64 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-------GGGTTC-CTT------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC---SS
T ss_pred             CCCHHHHHHHHHHHHHCCCC-------CcCCCC-CCC------CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCC---CC
Confidence            59999999999999999653       368999 655      68994  9999998643  4899999988754   33


Q ss_pred             CCcccccccccCCCCCCCEeeCCC-CCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcc
Q 002350          103 DWFPLLNMSLFHPLEELQSLDLSV-NIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRI  181 (933)
Q Consensus       103 ~~~~~~~~~~f~~l~~L~~LdLs~-n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  181 (933)
                      ..  .+ ++.+.++++|++|||++ |.+.|.+|    ..++++++|++|+|++|++.+..+..+..+.+|+++++++|.+
T Consensus        65 ~~--~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~  137 (313)
T d1ogqa_          65 PY--PI-PSSLANLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             CE--EC-CGGGGGCTTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CC--CC-ChHHhcCccccccccccccccccccc----cccccccccchhhhccccccccccccccchhhhcccccccccc
Confidence            21  11 23566666777777765 56666665    5566666666666666666666666666666666666666666


Q ss_pred             cCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCC-CEEEccCCcCCCCCchhccCCCCCCEEECCCCcCCCCCCh
Q 002350          182 EGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRL-KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL  260 (933)
Q Consensus       182 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  260 (933)
                      .+..| ..+.++++|+++++++|.+.+.+|..+..+.++ +.+++++|++++..|..+..+..+ .++++.+...+.+| 
T Consensus       138 ~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~-  214 (313)
T d1ogqa_         138 SGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS-  214 (313)
T ss_dssp             ESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG-
T ss_pred             cccCc-hhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-
Confidence            65555 456666666666666666666666666665554 566666666666666665555433 56666666555444 


Q ss_pred             hhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCC
Q 002350          261 SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNN  340 (933)
Q Consensus       261 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  340 (933)
                      ..+..                         +..++.+++.+|.+.+.+| .+..+++|+.|+|++|+++|.+|.++. ++
T Consensus       215 ~~~~~-------------------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~-~L  267 (313)
T d1ogqa_         215 VLFGS-------------------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QL  267 (313)
T ss_dssp             GGCCT-------------------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGG-GC
T ss_pred             ccccc-------------------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHh-CC
Confidence            23333                         4455555566666555433 455566666666666666666666653 56


Q ss_pred             CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCc
Q 002350          341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN  376 (933)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  376 (933)
                      ++|++|+|++|++++..+ .+..+++|+.+++++|+
T Consensus       268 ~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         268 KFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             CCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            666666666666664321 23456666666677665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=8.1e-32  Score=290.33  Aligned_cols=256  Identities=35%  Similarity=0.559  Sum_probs=227.1

Q ss_pred             cceeecCCCcCCC--CcchhccCCCCCCEEEccC-CcCccccCccc-cCCCCceEEeecCcCcccCchhhccCCCccEEe
Q 002350          514 LEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN  589 (933)
Q Consensus       514 L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  589 (933)
                      ++.|+|++|.+.+  .+|..+.++++|++|+|++ |+++|.+|..+ ++++|++|+|++|++.+..+..+..+.+|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            6777777777776  4678888888888888886 78888888777 888899999999999888888899999999999


Q ss_pred             CcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCC-CEEEccCCcCCCCCCchhhhhhccccCCCCccCCC
Q 002350          590 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS  668 (933)
Q Consensus       590 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~  668 (933)
                      +++|.+.+.+|..+..++.|+.+++++|.+.+.+|..+..+..+ +.+++++|+++|..|..+..+              
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--------------  197 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            99999999999999999999999999999999999999888876 889999999998888766543              


Q ss_pred             CCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCC
Q 002350          669 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI  748 (933)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i  748 (933)
                                                                                      ....++++++...|.+
T Consensus       198 ----------------------------------------------------------------~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         198 ----------------------------------------------------------------NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             ----------------------------------------------------------------CCSEEECCSSEEEECC
T ss_pred             ----------------------------------------------------------------cccccccccccccccc
Confidence                                                                            1235899999999999


Q ss_pred             ChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCCCcCCc
Q 002350          749 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFAT  828 (933)
Q Consensus       749 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~  828 (933)
                      |..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|+.+.++++|++|||++|+|+|.+|+.+.+.+
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~  292 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR  292 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCC
Confidence            9999999999999999999998766 589999999999999999999999999999999999999999999999888999


Q ss_pred             cCcccccCCCCCCCccccCCC
Q 002350          829 FDESSYRGNPSLCAWLIQQKY  849 (933)
Q Consensus       829 ~~~~~~~gN~~lc~~~l~~~~  849 (933)
                      +....+.||+.+||.|+. .|
T Consensus       293 L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         293 FDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SCGGGTCSSSEEESTTSS-CC
T ss_pred             CCHHHhCCCccccCCCCC-CC
Confidence            999999999999998864 45

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=9.9e-26  Score=250.08  Aligned_cols=194  Identities=25%  Similarity=0.339  Sum_probs=145.4

Q ss_pred             chhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCC
Q 002350          529 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN  608 (933)
Q Consensus       529 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  608 (933)
                      ...+..+++++.+++++|.+++..+ ...+++|++|++++|.++..  +.+..+++|+.|++++|++++..  .+..+++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--ccccccc
Confidence            3445666777777887777776544 23566778888888877643  35677888888888888887543  3677788


Q ss_pred             ccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCC
Q 002350          609 LRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNR  688 (933)
Q Consensus       609 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (933)
                      |++|++++|++++..  .+..++.++.+++++|.+++. + .+.                                    
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~-~~~------------------------------------  304 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S-PIS------------------------------------  304 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G-GGG------------------------------------
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc-c-ccc------------------------------------
Confidence            888888888887543  367788888888888887641 1 111                                    


Q ss_pred             CCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeecccccc
Q 002350          689 SSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSL  768 (933)
Q Consensus       689 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  768 (933)
                                                               .++.++.|++++|++++. + .+..+++|++|++++|++
T Consensus       305 -----------------------------------------~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         305 -----------------------------------------NLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             -----------------------------------------GCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCC
T ss_pred             -----------------------------------------hhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCC
Confidence                                                     134677799999999864 3 388899999999999999


Q ss_pred             ccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCC
Q 002350          769 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN  814 (933)
Q Consensus       769 ~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  814 (933)
                      ++ +| .|+++++|++||+++|++++.+|  +.++++|+.|+|++|
T Consensus       342 ~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            85 44 58999999999999999997655  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.1e-25  Score=245.06  Aligned_cols=341  Identities=21%  Similarity=0.247  Sum_probs=214.2

Q ss_pred             CCCCEEEcCCCCCcCcCcCCcccCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEE
Q 002350          341 PKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLD  420 (933)
Q Consensus       341 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  420 (933)
                      .+|++|+++++.++.+  ..+..+++|++|++++|+++ .+|. + ..+++|++|++++|.+.+..  .++.+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l-~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-c-cCCccccccccccccccccc--cccccccccccc
Confidence            4455555555555544  23345555666666666555 3332 2 23566666666666665432  255666666666


Q ss_pred             cCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCC
Q 002350          421 LSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS  500 (933)
Q Consensus       421 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  500 (933)
                      ++++.+++..+   ......+.......|.+......................     ....+...+.........|...
T Consensus       117 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         117 LFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             CCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc---ccccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccccc
Confidence            66666553222   123345555555555544332222211111111111111     1122333444455555555443


Q ss_pred             CCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhc
Q 002350          501 GHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF  580 (933)
Q Consensus       501 ~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  580 (933)
                        .......++. ++.+++++|.+++..|  +..+++|+.|++++|+++.. +....+++|+.|++++|.+++..  .+.
T Consensus       189 --~~~~~~~l~~-~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~~  260 (384)
T d2omza2         189 --DISVLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA--PLS  260 (384)
T ss_dssp             --CCGGGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--GGT
T ss_pred             --cccccccccc-cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc-chhhcccccchhccccCccCCCC--ccc
Confidence              2233444554 7777777777776544  34567788888888877653 33336788888888888887653  367


Q ss_pred             cCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccC
Q 002350          581 RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG  660 (933)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~  660 (933)
                      .+++|++|++++|++++..  .+..++.++.+.+++|++++.  ..+..+++++.|++++|++++..|  +.        
T Consensus       261 ~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~--------  326 (384)
T d2omza2         261 GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VS--------  326 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GG--------
T ss_pred             ccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cc--------
Confidence            7888999999999887543  367788899999999998853  357888999999999999885322  21        


Q ss_pred             CCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcC
Q 002350          661 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS  740 (933)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs  740 (933)
                                                                                           .+++|+.|+++
T Consensus       327 ---------------------------------------------------------------------~l~~L~~L~L~  337 (384)
T d2omza2         327 ---------------------------------------------------------------------SLTKLQRLFFA  337 (384)
T ss_dssp             ---------------------------------------------------------------------GCTTCCEEECC
T ss_pred             ---------------------------------------------------------------------cCCCCCEEECC
Confidence                                                                                 13468889999


Q ss_pred             CCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCe
Q 002350          741 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNK  791 (933)
Q Consensus       741 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  791 (933)
                      +|++++ +| .++++++|++|++++|++++.+|  ++++++|++|+|++|.
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            999984 55 68999999999999999998766  8999999999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.9e-23  Score=220.91  Aligned_cols=196  Identities=24%  Similarity=0.317  Sum_probs=96.1

Q ss_pred             CEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccC
Q 002350          417 SLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN  496 (933)
Q Consensus       417 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  496 (933)
                      +.++-+++.++ .+|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+....|..+..++.|++|++++
T Consensus        13 ~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            34444444444 3444321   3455555555555544444555556666666666666554455566666666666666


Q ss_pred             CcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCc
Q 002350          497 NMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIP  576 (933)
Q Consensus       497 n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p  576 (933)
                      |+++ .+|....   ..++.|++.+|.+.+..+..+.....+..++...|....                     ....+
T Consensus        89 n~l~-~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~---------------------~~~~~  143 (305)
T d1xkua_          89 NQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---------------------SGIEN  143 (305)
T ss_dssp             SCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---------------------GGBCT
T ss_pred             CccC-cCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccc---------------------cCCCc
Confidence            6665 3443221   125556666666555444445555555555555543321                     11222


Q ss_pred             hhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCC
Q 002350          577 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS  644 (933)
Q Consensus       577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  644 (933)
                      ..+..+++|+.+++++|.++ .+|..+  +++|+.|++++|..++..+..+.+++.++.|++++|.++
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence            33444455555555555544 223221  344555555555544444444444444444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.1e-22  Score=215.15  Aligned_cols=243  Identities=20%  Similarity=0.283  Sum_probs=172.0

Q ss_pred             ccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEEcc
Q 002350          392 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE  471 (933)
Q Consensus       392 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  471 (933)
                      .+.++-++..++ .+|..+.  +++++|+|++|+++ .++...+.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344555555554 3444432  45666666666665 4555455566666666666666666666666677777777777


Q ss_pred             CccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCC--CCcchhccCCCCCCEEEccCCcCc
Q 002350          472 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDISENRLS  549 (933)
Q Consensus       472 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~  549 (933)
                      +|+++ .+|..+  ...++.|++.+|.+.+..+..+..... +..++...|...  ...+..+..+++|+.+++++|++.
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~-~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccc-ccccccccccccccCCCccccccccccCccccccCCcc
Confidence            77776 344332  356777888887777443333333333 667777766543  234556788889999999999886


Q ss_pred             cccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhc
Q 002350          550 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ  629 (933)
Q Consensus       550 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  629 (933)
                      .....  .+++|++|++++|...+..+..+..++.+++|++++|.+++..+.++.++++|++|+|++|+++ .+|++|..
T Consensus       164 ~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            53222  3678889999999888888888888999999999999998888888888999999999999988 56788888


Q ss_pred             CCCCCEEEccCCcCCC
Q 002350          630 LQKLAMMDLSRNKFSG  645 (933)
Q Consensus       630 l~~L~~L~Ls~N~l~g  645 (933)
                      +++|+.|++++|+++.
T Consensus       241 l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         241 HKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CSSCCEEECCSSCCCC
T ss_pred             ccCCCEEECCCCccCc
Confidence            9999999999998873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=220.03  Aligned_cols=225  Identities=21%  Similarity=0.230  Sum_probs=119.2

Q ss_pred             EEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEee-cC
Q 002350          492 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ-KN  569 (933)
Q Consensus       492 L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~-~n  569 (933)
                      ++.++++++ .+|..+   ++++++|+|++|++++..+.+|.++++|+.|++++|++.+..+..+ .+..++.+... .+
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            445555554 455432   2336666666666665555556666666666666666655544444 44444444432 23


Q ss_pred             cCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCc
Q 002350          570 ALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP  649 (933)
Q Consensus       570 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~  649 (933)
                      .++...+..|.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|                
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L----------------  155 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL----------------  155 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch----------------
Confidence            3333334444444445555555444443334444444444444444444443333344444444                


Q ss_pred             hhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCC
Q 002350          650 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS  729 (933)
Q Consensus       650 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  729 (933)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (284)
T d1ozna_         156 --------------------------------------------------------------------------------  155 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeE
Q 002350          730 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIF  809 (933)
Q Consensus       730 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  809 (933)
                           +.|++++|++++..|..+..+++|+.+++++|++++..|..|+++++|++||+++|++++..|..+..+++|++|
T Consensus       156 -----~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         156 -----THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             -----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             -----hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence                 445555555554445555555556666666666655555556666666666666666655555555555666666


Q ss_pred             EccCCcCcccCC
Q 002350          810 NVSYNNLSGRTP  821 (933)
Q Consensus       810 ~ls~N~l~g~~p  821 (933)
                      ++++|++.|.++
T Consensus       231 ~l~~N~l~C~C~  242 (284)
T d1ozna_         231 RLNDNPWVCDCR  242 (284)
T ss_dssp             ECCSSCEECSGG
T ss_pred             EecCCCCCCCcc
Confidence            666666655544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.6e-23  Score=215.22  Aligned_cols=227  Identities=18%  Similarity=0.209  Sum_probs=186.3

Q ss_pred             EEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcC-CCc
Q 002350          540 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG-GNH  618 (933)
Q Consensus       540 ~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~-~N~  618 (933)
                      .++.++++++. +|..+ .+++++|+|++|++++..+..|.++++|++|++++|++.+..+..+..+..++.+... .|.
T Consensus        15 ~v~c~~~~L~~-iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQA-VPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSS-CCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCc-cCCCC-CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            34555555553 33322 2467888888888887777788889999999999999988888888888888888764 667


Q ss_pred             CCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhh
Q 002350          619 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR  698 (933)
Q Consensus       619 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (933)
                      ++...|..|+++++|+.|++++|.+.+..+..+.                                              
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------------------------------------  126 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR----------------------------------------------  126 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----------------------------------------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccc----------------------------------------------
Confidence            7777788899999999999999998754433322                                              


Q ss_pred             hhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccC
Q 002350          699 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN  778 (933)
Q Consensus       699 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  778 (933)
                                                     ....|+.+++++|++++..+..|..+++|+.|++++|++++..|..|.+
T Consensus       127 -------------------------------~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         127 -------------------------------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             -------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             -------------------------------hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence                                           1346788999999999777788999999999999999999999999999


Q ss_pred             CCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccCcccccCCCCCCCccc
Q 002350          779 LKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPSLCAWLI  845 (933)
Q Consensus       779 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gN~~lc~~~l  845 (933)
                      +++|+.+++++|++++..|..|..+++|++||+++|.+.+..|.. .....+....+.|||+.|+|.+
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            999999999999999999999999999999999999999877744 4556677778999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=203.96  Aligned_cols=205  Identities=20%  Similarity=0.206  Sum_probs=161.0

Q ss_pred             cCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEE
Q 002350          533 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL  612 (933)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  612 (933)
                      .+...+.+++.+++.++.. |..+ .+++++|+|++|++++..+..|.++++|++|+|++|+++. +| .++.+++|++|
T Consensus         7 ~~~~~~~~v~C~~~~L~~i-P~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             cccCCCeEEEccCCCCCee-CcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            3455677788888888754 4433 2578899999999987777788888999999999998873 44 35678889999


Q ss_pred             EcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCcc
Q 002350          613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNT  692 (933)
Q Consensus       613 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (933)
                      +|++|++++ .+..+.++++|+.|++++|.+.+..+..+.                                        
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------------------------------------  121 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR----------------------------------------  121 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT----------------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccc----------------------------------------
Confidence            999998884 566788888999999988888754333222                                        


Q ss_pred             ccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeecccccccccc
Q 002350          693 MFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI  772 (933)
Q Consensus       693 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~  772 (933)
                                                           .+.++..|++++|.+++..+..+..++.|+.|++++|++++..
T Consensus       122 -------------------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_         122 -------------------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             -------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             -------------------------------------cccccccccccccccceeccccccccccchhcccccccccccC
Confidence                                                 1345677889999988777777788888999999999999888


Q ss_pred             chhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccCCcCcccC
Q 002350          773 PESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT  820 (933)
Q Consensus       773 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~  820 (933)
                      ++.|+.+++|++|||++|+|+ .+|.++..+++|++|+|++|++.+.+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            888888999999999999988 78888888888888888888776544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-21  Score=202.39  Aligned_cols=205  Identities=24%  Similarity=0.234  Sum_probs=168.6

Q ss_pred             cCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEE
Q 002350          557 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM  636 (933)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  636 (933)
                      ....+.+++.+++.++. +|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. +| .++.+++|+.|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            45567778888888884 576554  579999999999997767789999999999999999984 44 35788999999


Q ss_pred             EccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHh
Q 002350          637 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE  716 (933)
Q Consensus       637 ~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  716 (933)
                      ++++|++++. |..+.                                                                
T Consensus        83 ~Ls~N~l~~~-~~~~~----------------------------------------------------------------   97 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQ----------------------------------------------------------------   97 (266)
T ss_dssp             ECCSSCCSSC-CCCTT----------------------------------------------------------------
T ss_pred             cccccccccc-ccccc----------------------------------------------------------------
Confidence            9999998743 32222                                                                


Q ss_pred             hhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccC
Q 002350          717 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI  796 (933)
Q Consensus       717 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~i  796 (933)
                                   .++.|+.|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus        98 -------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          98 -------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             -------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             -------------cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence                         2346788999999998878888888999999999999999888888899999999999999999888


Q ss_pred             CcCCcCCCCCCeEEccCCcCcccCCCC-CcCCccCcccccCCCCCCCccc
Q 002350          797 PPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPSLCAWLI  845 (933)
Q Consensus       797 p~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gN~~lc~~~l  845 (933)
                      |..+..+++|++|||++|+|+ .+|.+ .....+....+.||||.|+|.+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            888999999999999999998 56644 4556677788899999998753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4e-20  Score=209.47  Aligned_cols=380  Identities=20%  Similarity=0.193  Sum_probs=207.5

Q ss_pred             CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCC----CccccccCCCCCCEEEcCCCcCCCCcchhhh----cC
Q 002350          366 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQSVV----TG  437 (933)
Q Consensus       366 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~~  437 (933)
                      +|++||+++|++++..-..+...+++++.|+|++|.++.    .+...+..+++|++|+|++|+++..-...+.    ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466677777766643323333446777777777777653    2234456677777777777776421111111    12


Q ss_pred             CCCCCEEECcCCcCCCcC----chhhcccCcCCeEEccCccccccccccc-----cCCCCCCEEEccCCcCCCCCh----
Q 002350          438 CFSLELLDLSNNNFEGQF----FSEYMNLTRLRHLYFENNNFSGKIKDGL-----LSSTSLQVLDISNNMLSGHIP----  504 (933)
Q Consensus       438 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~p----  504 (933)
                      ..+|++|++++|++++..    +..+..+++|++|++++|.++......+     ...............+.....    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            346777777777776542    3345566777777777777653221111     112223334443333321111    


Q ss_pred             hhHhhhccccceeecCCCcCCCCc----chhc-cCCCCCCEEEccCCcCccccC----ccc-cCCCCceEEeecCcCccc
Q 002350          505 HWMGNFSSELEILSMSKNHLEGNV----PVQL-NNLERLRILDISENRLSGPIA----SSL-NLSSVEHLSLQKNALNGL  574 (933)
Q Consensus       505 ~~l~~~~~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~Ls~n~l~~~~~----~~~-~l~~L~~L~L~~n~l~~~  574 (933)
                      ..+..... ++.++++++......    ...+ ..-.....+++..+.+.....    ... ..+.++.+++.+|.+...
T Consensus       163 ~~l~~~~~-~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         163 SVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            11112222 566666666543211    0111 112345566666665432211    111 456667777777665321


Q ss_pred             -----CchhhccCCCccEEeCcCCcCccc----CchhhhcCCCccEEEcCCCcCCCCCchhh-----hcCCCCCEEEccC
Q 002350          575 -----IPGELFRSCKLVTLNLRDNTFSGR----IPHQINEHSNLRFLLLGGNHLQGPIPDQL-----CQLQKLAMMDLSR  640 (933)
Q Consensus       575 -----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~  640 (933)
                           .+........++.+++++|.+...    ....+...+.++.+++++|+++......+     .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 222334456777777777776532    23344566777777777777653222221     1235677777777


Q ss_pred             CcCCCCCCchhhhhhccccCCCCccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhc
Q 002350          641 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK  720 (933)
Q Consensus       641 N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  720 (933)
                      |.++......+.++.                                                                 
T Consensus       322 ~~l~~~~~~~l~~~~-----------------------------------------------------------------  336 (460)
T d1z7xw1         322 CSFTAACCSHFSSVL-----------------------------------------------------------------  336 (460)
T ss_dssp             SCCBGGGHHHHHHHH-----------------------------------------------------------------
T ss_pred             cchhhhhhhhccccc-----------------------------------------------------------------
Confidence            766522111111100                                                                 


Q ss_pred             cceeeecCCCCCcccEEEcCCCcCCCC----CChhhh-hccccCeeeccccccccc----cchhccCCCCCCEEECcCCe
Q 002350          721 NRYEIYNGSNVNRVTGLDLSCNQLTGE----IPSDIG-QLQAILALNLSNNSLSGS----IPESFSNLKMIESLDISYNK  791 (933)
Q Consensus       721 ~~~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~  791 (933)
                              ....+|+.|||++|+++++    +++.+. ..+.|++|+|++|+|+..    +++.+...++|++|||++|+
T Consensus       337 --------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         337 --------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             --------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             --------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence                    0124678889999888653    333333 356688999999988753    45566777889999999998


Q ss_pred             ecccCCcCC----c-CCCCCCeEEccCCcCccc
Q 002350          792 LTGQIPPQL----T-ALNFLSIFNVSYNNLSGR  819 (933)
Q Consensus       792 l~~~ip~~l----~-~l~~L~~L~ls~N~l~g~  819 (933)
                      ++......+    . +...|+.|++++|.+...
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            875433322    2 334688999998887643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-20  Score=212.62  Aligned_cols=110  Identities=23%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             CCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCC----cchhhhcCCCCCCEEecCCCcccCccChhhhc--
Q 002350          118 ELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDD----SIFSYLNTLPSLCTLILHWNRIEGSQTNQGIC--  191 (933)
Q Consensus       118 ~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~--  191 (933)
                      +|++||+++|++++....   ..+..++++|+|+|++|.++.    .++..+..+++|++|||++|.|+.... ..+.  
T Consensus         3 ~l~~ld~~~~~i~~~~~~---~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~-~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV-HCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH---HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH-HHHHHT
T ss_pred             CCCEEEeeCCcCChHHHH---HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH-HHHHHH
Confidence            567777777777653211   234456667777777776653    233445566666666666666542111 1111  


Q ss_pred             ---CCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEccCCcCC
Q 002350          192 ---ELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDISSNQLN  231 (933)
Q Consensus       192 ---~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  231 (933)
                         ...+|++|+|++|.+++.    ++..+..+++|++|++++|.++
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence               123455555555555432    2334445555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=5.7e-16  Score=168.18  Aligned_cols=35  Identities=34%  Similarity=0.586  Sum_probs=19.4

Q ss_pred             CCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcCC
Q 002350          219 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE  255 (933)
Q Consensus       219 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  255 (933)
                      .|++|++++|.+.. +|. ++.+++|++|+++++.+.
T Consensus        99 ~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          99 LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccccc-ccc-hhhhccceeecccccccc
Confidence            45666666666552 332 455666666666655554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2.7e-16  Score=170.78  Aligned_cols=308  Identities=25%  Similarity=0.299  Sum_probs=198.0

Q ss_pred             cceEEEccCCCCCCCCchhhhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEEEcCCCCCcCcCcCCcccCCCccEEEc
Q 002350          293 QLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDI  372 (933)
Q Consensus       293 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  372 (933)
                      ++++|++++++++ .+|+.   .++|++|++++|+++ .+|.    ...+|+.|++.+|+++.+...+    +.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~~lp----~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDLP----PLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSCC----TTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhhhhc----cccccccc
Confidence            4667778888776 35653   467888888888887 6775    3567888888888877664332    45888888


Q ss_pred             cCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECcCCcCC
Q 002350          373 SCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE  452 (933)
Q Consensus       373 s~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  452 (933)
                      ++|.+. .+|..  ..+++|++|++++|.+... +.   ....+..+.+..+....   ...+..++.++.+++.+|...
T Consensus       106 ~~n~l~-~lp~~--~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLE-KLPEL--QNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCS-SCCCC--TTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccch--hhhccceeecccccccccc-cc---ccccccchhhccccccc---cccccccccceeccccccccc
Confidence            888887 56643  2478888888888877632 22   24566777776665542   122356677888888888765


Q ss_pred             CcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCCCcchhc
Q 002350          453 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQL  532 (933)
Q Consensus       453 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~  532 (933)
                      ....    .....+.+...++.+. .++ .+..++.|+.+++++|... .++...    .++..+.+.++.+... +.  
T Consensus       176 ~~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~~~----~~l~~~~~~~~~~~~~-~~--  241 (353)
T d1jl5a_         176 KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVRDNYLTDL-PE--  241 (353)
T ss_dssp             SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCC----TTCCEEECCSSCCSCC-CC--
T ss_pred             cccc----cccccccccccccccc-ccc-ccccccccccccccccccc-cccccc----cccccccccccccccc-cc--
Confidence            4321    1223455666655554 233 3566788888888888765 344322    2377777777776632 21  


Q ss_pred             cCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhhcCCCccEE
Q 002350          533 NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFL  612 (933)
Q Consensus       533 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  612 (933)
                       ....+...++..+.+.+...   -.......++..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|
T Consensus       242 -~~~~l~~~~~~~~~~~~l~~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L  309 (353)
T d1jl5a_         242 -LPQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERL  309 (353)
T ss_dssp             -CCTTCCEEECCSSCCSEESC---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred             -cccccccccccccccccccc---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEE
Confidence             23456677776666543211   112334555666655433    234578899999999888 56654   5688899


Q ss_pred             EcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhh
Q 002350          613 LLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  654 (933)
Q Consensus       613 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l  654 (933)
                      +|++|+++ .+|+.   +++|+.|++++|+++ .+|.....+
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L  346 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESV  346 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTC
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccccc
Confidence            99999988 46643   467889999999987 566543333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=6.5e-17  Score=163.66  Aligned_cols=205  Identities=17%  Similarity=0.278  Sum_probs=135.3

Q ss_pred             ceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccccCCCCceEEeecCcCcccCchhhccCCCccEEeCcCCc
Q 002350          515 EILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT  594 (933)
Q Consensus       515 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  594 (933)
                      ..++++.+++++..  .+..+.+|+.|++.+|.++.. +..-.+++|++|++++|.+++..|  +..+++|+++++++|.
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            34455556555433  244556677777777766543 332366677777777776665432  6677777777777777


Q ss_pred             CcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCCCccCCCCCCCCC
Q 002350          595 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE  674 (933)
Q Consensus       595 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  674 (933)
                      ++. + ..+..+++|+.++++++...+.  ..+...+.+..++++++.+....+  +                       
T Consensus        97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~-----------------------  147 (227)
T d1h6ua2          97 LKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L-----------------------  147 (227)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G-----------------------
T ss_pred             ccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--h-----------------------
Confidence            763 3 3466777777777777776643  235566777777777766653211  1                       


Q ss_pred             ccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCCcCCCCCChhhhh
Q 002350          675 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ  754 (933)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  754 (933)
                                                                            ...++|+.|++++|.+++.  ..+++
T Consensus       148 ------------------------------------------------------~~~~~L~~L~l~~n~~~~~--~~l~~  171 (227)
T d1h6ua2         148 ------------------------------------------------------AGLTNLQYLSIGNAQVSDL--TPLAN  171 (227)
T ss_dssp             ------------------------------------------------------GGCTTCCEEECCSSCCCCC--GGGTT
T ss_pred             ------------------------------------------------------ccccccccccccccccccc--hhhcc
Confidence                                                                  1123567788888888643  23778


Q ss_pred             ccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccC
Q 002350          755 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  813 (933)
Q Consensus       755 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  813 (933)
                      +++|+.|+|++|++++. |. ++++++|++|+|++|++++. | .+.++++|++|++++
T Consensus       172 l~~L~~L~Ls~n~l~~l-~~-l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         172 LSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cccceecccCCCccCCC-hh-hcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            88888888888888853 33 78888889999998888854 3 378888888888874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=7.5e-17  Score=163.19  Aligned_cols=104  Identities=22%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCC
Q 002350          142 RSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLK  221 (933)
Q Consensus       142 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  221 (933)
                      ..+++|++|++++|.++..  ..+.++++|++|++++|.+++..+   +..+++|+++++++|.++..  ..++++++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc---cccccccccccccccccccc--cccccccccc
Confidence            3445555555555555432  234555555555555555543322   44555555555555544431  2344555555


Q ss_pred             EEEccCCcCCCCCchhccCCCCCCEEECCCCcC
Q 002350          222 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF  254 (933)
Q Consensus       222 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  254 (933)
                      .++++++...+.  ..+...+.++.+.++.+.+
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~  141 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI  141 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccc--chhccccchhhhhchhhhh
Confidence            555555444322  2233444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-16  Score=161.22  Aligned_cols=80  Identities=19%  Similarity=0.005  Sum_probs=51.2

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCe-eeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILA-LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV  811 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  811 (933)
                      .++.|++++|+++. ++.......+++. +++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+++++
T Consensus       154 ~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            45567777777774 3333333444433 456777777555566788888888888888887554556777777766665


Q ss_pred             cC
Q 002350          812 SY  813 (933)
Q Consensus       812 s~  813 (933)
                      .+
T Consensus       233 ~~  234 (242)
T d1xwdc1         233 YN  234 (242)
T ss_dssp             ES
T ss_pred             CC
Confidence            44

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=7.6e-16  Score=153.28  Aligned_cols=74  Identities=23%  Similarity=0.423  Sum_probs=47.4

Q ss_pred             cccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEcc
Q 002350          733 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS  812 (933)
Q Consensus       733 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  812 (933)
                      .++.+++++|.+++  +..+..+++|+.+++++|++++..|  ++++++|++|+|++|+++. +| .+.++++|++|+|+
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            44556666666653  2345566677777777777764322  6677777777777777763 44 46777777777775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=8.8e-17  Score=157.79  Aligned_cols=86  Identities=26%  Similarity=0.377  Sum_probs=44.3

Q ss_pred             ccEEEcCCCcCCCCCChhhhhccccCeeeccccccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEEccC
Q 002350          734 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY  813 (933)
Q Consensus       734 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  813 (933)
                      |+.|+|++|++++.++..+..+++|+.|+|++|+|++..|.+|.++++|++|+|++|+|++..|..|..+++|++++|++
T Consensus        56 L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             EeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence            44444444444444444455555555555555555554455555555555555555555555555555555555555555


Q ss_pred             CcCccc
Q 002350          814 NNLSGR  819 (933)
Q Consensus       814 N~l~g~  819 (933)
                      |++.+.
T Consensus       136 N~~~~~  141 (192)
T d1w8aa_         136 NPFNCN  141 (192)
T ss_dssp             CCBCCS
T ss_pred             cccccc
Confidence            555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-16  Score=160.98  Aligned_cols=220  Identities=12%  Similarity=0.085  Sum_probs=117.0

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350          368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  447 (933)
Q Consensus       368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  447 (933)
                      +.++.++..++ .+|..+   .+++++|++++|.++...+..|.++++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34555555555 555543   24566666666666533333455666666666666655544444444555555555543


Q ss_pred             C-CcCCCcCchhhcccCcCCeEEccCccccccccccccCCCCCCEEEccCCcCCCCChhhHhhhccccceeecCCCcCCC
Q 002350          448 N-NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG  526 (933)
Q Consensus       448 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~L~~n~l~~  526 (933)
                      . |.+....+..|.++++|+++++++|.+....+  +..+.                     .+.. +..+...++.+..
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~---------------------~l~~-l~~~~~~n~~l~~  142 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIH---------------------SLQK-VLLDIQDNINIHT  142 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTC---------------------BSSC-EEEEEESCTTCCE
T ss_pred             ccccccccccccccccccccccccchhhhccccc--ccccc---------------------cccc-ccccccccccccc
Confidence            2 34444444444444444444444444432111  11111                     1111 3333444444443


Q ss_pred             CcchhccCCC-CCCEEEccCCcCccccCccccCCCCceE-EeecCcCcccCchhhccCCCccEEeCcCCcCcccCchhhh
Q 002350          527 NVPVQLNNLE-RLRILDISENRLSGPIASSLNLSSVEHL-SLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN  604 (933)
Q Consensus       527 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  604 (933)
                      ..+..+.+++ .++.|++++|+++...+..+...+++++ .+++|+++...+..|.++++|++|++++|+++...+..|.
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             ccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            3344444443 5667777777776655555555555544 3456667655555677788888888888888754455566


Q ss_pred             cCCCccEEEcC
Q 002350          605 EHSNLRFLLLG  615 (933)
Q Consensus       605 ~l~~L~~L~L~  615 (933)
                      ++++|+++++.
T Consensus       223 ~l~~L~~l~~~  233 (242)
T d1xwdc1         223 NLKKLRARSTY  233 (242)
T ss_dssp             TCCEEESSSEE
T ss_pred             CCcccccCcCC
Confidence            66666655553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=6.9e-16  Score=151.28  Aligned_cols=129  Identities=19%  Similarity=0.283  Sum_probs=93.2

Q ss_pred             cceeecCCCcCCCCcchhccCCCCCCEEEccCCcCcccc-Cccc-cCCCCceEEeecCcCcccCchhhccCCCccEEeCc
Q 002350          514 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR  591 (933)
Q Consensus       514 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  591 (933)
                      .+.++.++++++ .+|..+.  +++++|+|++|++++.+ +..+ ++++|++|+|++|.+.+..+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            345555666655 3444332  45677777777776533 3333 67777777777777777777777788888888888


Q ss_pred             CCcCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCC
Q 002350          592 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG  645 (933)
Q Consensus       592 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  645 (933)
                      +|+++...|.+|.++++|++|+|++|++++..|++|..+++|++|+|++|++.+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            888887777778888888888888888887777778888888888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.9e-15  Score=148.06  Aligned_cols=61  Identities=30%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             hcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEEECCCCcC
Q 002350          190 ICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF  254 (933)
Q Consensus       190 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l  254 (933)
                      +..+++|++|++++|++++..  .++++++|++|++++|++++ +| .+.++++|+.|++++|.+
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCC
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccc
Confidence            344444444444444444421  23444555555555555442 22 344455555555554443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.3e-14  Score=142.94  Aligned_cols=81  Identities=31%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             CCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCchhccCCCCCCEE
Q 002350          168 LPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYL  247 (933)
Q Consensus       168 l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  247 (933)
                      +.++++|++++|.++..   .++..+++|++|++++|++++..+  ++++++|++|++++|.+... + .+.++++|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccc
Confidence            34445555555544432   234455555555555555554322  55555555555555555422 2 25555555555


Q ss_pred             ECCCCcCC
Q 002350          248 DLSHNNFE  255 (933)
Q Consensus       248 ~L~~n~l~  255 (933)
                      ++++|...
T Consensus       112 ~l~~~~~~  119 (199)
T d2omxa2         112 TLFNNQIT  119 (199)
T ss_dssp             ECCSSCCC
T ss_pred             cccccccc
Confidence            55555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.5e-14  Score=142.42  Aligned_cols=32  Identities=34%  Similarity=0.430  Sum_probs=16.9

Q ss_pred             hhCCCCCCEEEccCCCCcccchhHHHhCCCCCCEE
Q 002350          312 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVL  346 (933)
Q Consensus       312 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L  346 (933)
                      ++++++|++|++++|+++ .++.  +..+++|++|
T Consensus       168 l~~l~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence            445556666666666655 3332  2355555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=155.11  Aligned_cols=225  Identities=20%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350          120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM  199 (933)
Q Consensus       120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  199 (933)
                      ++|||+++.+.....    ..+.. .....+.++...+..... ......+|++||++++.+........+.++++|++|
T Consensus         3 ~~lDLs~~~l~~~~l----~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVT----GRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHH----HHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHH----HHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            467888776643222    11111 234555666555442222 233455777777777776644333445667777777


Q ss_pred             ECCCCCCCCcchhhcCCCCCCCEEEccCC-cCCCC-CchhccCCCCCCEEECCCCc-CCCCCChhhhhcCCCCceEeccc
Q 002350          200 NLERNFIGSPLITCLKNLTRLKILDISSN-QLNGS-LPSVISNLTSLEYLDLSHNN-FEGMFPLSSLANHSKLEGLLLST  276 (933)
Q Consensus       200 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~  276 (933)
                      +|++|.+++..+..++++++|++|++++| .++.. +.....++++|++|+++++. +++......+...          
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~----------  146 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV----------  146 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS----------
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc----------
Confidence            77777777666667777777777777774 34321 11223456667777776653 3211110111111          


Q ss_pred             ccCccccccCCCCCCCcceEEEccCCC--CCCC-CchhhhCCCCCCEEEccCCC-CcccchhHHHhCCCCCCEEEcCCC-
Q 002350          277 RNNTLHVKTENWLPTSQLIVLGLTKCN--LNGS-YPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRNNPKLEVLLLKNN-  351 (933)
Q Consensus       277 ~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n-  351 (933)
                                    .++|+.|+++++.  ++.. +.....++++|++|++++|. +++.....+. .+++|++|++++| 
T Consensus       147 --------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~  211 (284)
T d2astb2         147 --------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCY  211 (284)
T ss_dssp             --------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCT
T ss_pred             --------------ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCC
Confidence                          1233444444331  2211 22233456666666666653 4444444443 5666666666664 


Q ss_pred             CCcCcCcCCcccCCCccEEEccCC
Q 002350          352 SFSGILQLPKAKHDFLHHLDISCN  375 (933)
Q Consensus       352 ~l~~~~~~~~~~~~~L~~L~Ls~n  375 (933)
                      .+++.....++.+++|++|+++++
T Consensus       212 ~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         212 DIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCChHHHHHHhcCCCCCEEeeeCC
Confidence            344333233455666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.4e-15  Score=155.18  Aligned_cols=259  Identities=17%  Similarity=0.200  Sum_probs=140.1

Q ss_pred             cEEEccCCcCCCCCChhhhhcCCCccEEEccCCCCCCCccccccCCCCCCEEEcCCCcCCCCcchhhhcCCCCCCEEECc
Q 002350          368 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS  447 (933)
Q Consensus       368 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  447 (933)
                      +++|++++.+.......+..  .....+.++........ .......+|++||++++.+.......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46777777654222222221  23455555554443222 2233455777777777776644444556677777777777


Q ss_pred             CCcCCCcCchhhcccCcCCeEEccCc-cccccc-cccccCCCCCCEEEccCCc-CCCC-ChhhHhhhccccceeecCCCc
Q 002350          448 NNNFEGQFFSEYMNLTRLRHLYFENN-NFSGKI-KDGLLSSTSLQVLDISNNM-LSGH-IPHWMGNFSSELEILSMSKNH  523 (933)
Q Consensus       448 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~~~~~L~~L~L~~n~  523 (933)
                      +|.+++..+..+..+++|++|++++| .+++.. ......+++|++|++++|. +++. +...+....+.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            77766666666666667777777664 343211 1112345666666666642 2211 111222222224444444431


Q ss_pred             CCCCcchhccCCCCCCEEEccCCcCccc-cCccc-cCCCCceEEeecC-cCcccCchhhccCCCccEEeCcCC-cCcccC
Q 002350          524 LEGNVPVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEHLSLQKN-ALNGLIPGELFRSCKLVTLNLRDN-TFSGRI  599 (933)
Q Consensus       524 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~-~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~  599 (933)
                      .                      .++.. +.... .+++|++|++++| .+++.....+.++++|++|++++| .+++..
T Consensus       160 ~----------------------~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         160 K----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             G----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             c----------------------ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence            1                      12111 11111 4555666666554 345455566677778888888874 566555


Q ss_pred             chhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhh
Q 002350          600 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV  654 (933)
Q Consensus       600 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l  654 (933)
                      ...++.+++|+.|+++++--.+.++.....+++|+   +..++++...++.+++.
T Consensus       218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK  269 (284)
T ss_dssp             GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred             HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence            66677788888888887732222333334566654   56777777666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=5.3e-14  Score=151.74  Aligned_cols=246  Identities=18%  Similarity=0.122  Sum_probs=144.1

Q ss_pred             ccCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCc----------chhhhcCCCCCCEEecCCCcc
Q 002350          112 LFHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS----------IFSYLNTLPSLCTLILHWNRI  181 (933)
Q Consensus       112 ~f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----------~~~~l~~l~~L~~L~Ls~n~i  181 (933)
                      .+.....|+.|+|++|.+...........+...++|+.|+++++.....          +...+..+++|++|+|++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            3455677888888888775544333335677778888888877654321          233455667777777777776


Q ss_pred             cCccC---hhhhcCCCCCCEEECCCCCCCCcchhh-------------cCCCCCCCEEEccCCcCCCCC----chhccCC
Q 002350          182 EGSQT---NQGICELKNLFEMNLERNFIGSPLITC-------------LKNLTRLKILDISSNQLNGSL----PSVISNL  241 (933)
Q Consensus       182 ~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------------l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l  241 (933)
                      .....   ...+...++|++|++++|.+.......             ....+.|+.+++++|.+....    ...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            54321   123445677777777777654321111             123556677777766655322    2233455


Q ss_pred             CCCCEEECCCCcCCCCCChhhhhcCCCCceEecccccCccccccCCCCCCCcceEEEccCCCCCCC----CchhhhCCCC
Q 002350          242 TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGS----YPDFLLHQYH  317 (933)
Q Consensus       242 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~  317 (933)
                      +.|++|++++|.++..-..                     ......+..+++|+.|++++|.++..    +...+..+++
T Consensus       186 ~~L~~L~L~~n~i~~~g~~---------------------~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIE---------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHH---------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             hhhcccccccccccccccc---------------------cchhhhhcchhhhccccccccccccccccccccccccccc
Confidence            6666666666665421000                     00111233455666677777766532    3345667888


Q ss_pred             CCEEEccCCCCcccchhHHHh-----CCCCCCEEEcCCCCCcCcCcCC----c-ccCCCccEEEccCCcCC
Q 002350          318 LKYLDLSHNKLVGNFPTWLLR-----NNPKLEVLLLKNNSFSGILQLP----K-AKHDFLHHLDISCNNFR  378 (933)
Q Consensus       318 L~~L~Ls~n~l~~~~p~~~~~-----~l~~L~~L~L~~n~l~~~~~~~----~-~~~~~L~~L~Ls~n~l~  378 (933)
                      |++|+|++|.+++.....+..     ..+.|++|++++|.++......    + .+.+.|++|++++|++.
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            888888888887543333321     2357888888888876532111    1 25678889999998886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=8.7e-14  Score=150.01  Aligned_cols=232  Identities=20%  Similarity=0.264  Sum_probs=129.7

Q ss_pred             CCCccEEEccCCCCCCC----ccccccCCCCCCEEEcCCCcCCCC---cch------hhhcCCCCCCEEECcCCcCCCcC
Q 002350          389 LQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSGG---LSQ------SVVTGCFSLELLDLSNNNFEGQF  455 (933)
Q Consensus       389 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~---~~~------~~~~~l~~L~~L~Ls~n~l~~~~  455 (933)
                      ...+++|+|++|.+...    +...+...++|+.++++++.....   .+.      ..+..+++|+.|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            56777777777766432    223345567777777776644311   111      11233455566666655554432


Q ss_pred             c----hhhcccCcCCeEEccCccccccccccc-------------cCCCCCCEEEccCCcCCCCChhhHhhhccccceee
Q 002350          456 F----SEYMNLTRLRHLYFENNNFSGKIKDGL-------------LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILS  518 (933)
Q Consensus       456 ~----~~~~~l~~L~~L~L~~n~l~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~L~~L~  518 (933)
                      .    ..+..+++|++|++++|.+.......+             ...+.                         |+.+.
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~-------------------------L~~l~  164 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-------------------------LRSII  164 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-------------------------CCEEE
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcc-------------------------cceee
Confidence            2    122334555555555554431110000             12233                         55555


Q ss_pred             cCCCcCCCC----cchhccCCCCCCEEEccCCcCccc-----cCccc-cCCCCceEEeecCcCccc----CchhhccCCC
Q 002350          519 MSKNHLEGN----VPVQLNNLERLRILDISENRLSGP-----IASSL-NLSSVEHLSLQKNALNGL----IPGELFRSCK  584 (933)
Q Consensus       519 L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~-~l~~L~~L~L~~n~l~~~----~p~~~~~l~~  584 (933)
                      +++|++...    +...+..++.|+.|++++|++...     +...+ .+++|+.|++++|.++..    +...+..+++
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             cccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence            555555422    222344556667777776666431     12222 566777777777776432    3345667888


Q ss_pred             ccEEeCcCCcCcccCch----hhhc--CCCccEEEcCCCcCCCC----Cchhhh-cCCCCCEEEccCCcCCC
Q 002350          585 LVTLNLRDNTFSGRIPH----QINE--HSNLRFLLLGGNHLQGP----IPDQLC-QLQKLAMMDLSRNKFSG  645 (933)
Q Consensus       585 L~~L~Ls~N~l~~~~p~----~l~~--l~~L~~L~L~~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~g  645 (933)
                      |++|++++|.+++....    .+..  .+.|++|++++|+++..    +...+. ++++|++|++++|++..
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            89999999988754333    3332  36789999999988643    233343 57889999999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.7e-13  Score=118.68  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=46.1

Q ss_pred             hcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCC-chhccCCCC
Q 002350          165 LNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSL-PSVISNLTS  243 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~  243 (933)
                      ++++++|++|++++|+++.. | ..++.+++|++|++++|.+++. | .++++++|++|++++|+++... ...+..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~~l-p-~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRAL-P-PALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCC-C-GGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccCcc-h-hhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            33444444444444444322 2 1344444444444444444432 2 2455555555555555554322 134455555


Q ss_pred             CCEEECCCCcCCCC--CChhhhhcCCCCceE
Q 002350          244 LEYLDLSHNNFEGM--FPLSSLANHSKLEGL  272 (933)
Q Consensus       244 L~~L~L~~n~l~~~--~~~~~l~~l~~L~~L  272 (933)
                      |++|++++|.+++.  .+......+++|+.+
T Consensus        92 L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          92 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            55555555555421  122333444555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.2e-13  Score=127.26  Aligned_cols=110  Identities=22%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             cCCCCCCCEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcC
Q 002350          113 FHPLEELQSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICE  192 (933)
Q Consensus       113 f~~l~~L~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~  192 (933)
                      |.+...+|+|||++|+++.. +    ..+..+++|++|+|++|.++..  ..+..+++|++|++++|+++...+ ..+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~----~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-E----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-C----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHH
T ss_pred             ccCcCcCcEEECCCCCCCcc-C----ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCc-ccccc
Confidence            44445555555555555432 1    2223445555555555555422  124444455555555554443322 22334


Q ss_pred             CCCCCEEECCCCCCCCcc-hhhcCCCCCCCEEEccCCcC
Q 002350          193 LKNLFEMNLERNFIGSPL-ITCLKNLTRLKILDISSNQL  230 (933)
Q Consensus       193 l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l  230 (933)
                      +++|++|++++|.+.... ...+..+++|++|++++|.+
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCcc
Confidence            444444444444444311 12334444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-13  Score=126.80  Aligned_cols=132  Identities=18%  Similarity=0.055  Sum_probs=108.0

Q ss_pred             ccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEEECCCCCCCCcchhhcCCCC
Q 002350          139 DSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEMNLERNFIGSPLITCLKNLT  218 (933)
Q Consensus       139 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  218 (933)
                      ..+.+..+||+|+|++|+|+.. +..+..+++|++|+|++|+|+.. +  .+..+++|++|++++|.++...+..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C--CcccCcchhhhhcccccccCCCcccccccc
Confidence            3467788999999999999854 56678899999999999999865 2  488999999999999999886666677899


Q ss_pred             CCCEEEccCCcCCCCCc-hhccCCCCCCEEECCCCcCCCCCC--hhhhhcCCCCceEec
Q 002350          219 RLKILDISSNQLNGSLP-SVISNLTSLEYLDLSHNNFEGMFP--LSSLANHSKLEGLLL  274 (933)
Q Consensus       219 ~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~L  274 (933)
                      +|++|++++|++..... ..+..+++|++|++++|.++....  ...+..+++|+.|+-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99999999999985322 468889999999999999864322  235778888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2.4e-12  Score=115.00  Aligned_cols=118  Identities=25%  Similarity=0.249  Sum_probs=94.8

Q ss_pred             CEeeCCCCCCccccCccccccCCCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEecCCCcccCccChhhhcCCCCCCEE
Q 002350          120 QSLDLSVNIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDSIFSYLNTLPSLCTLILHWNRIEGSQTNQGICELKNLFEM  199 (933)
Q Consensus       120 ~~LdLs~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  199 (933)
                      |+|||++|.++..      +.+.++++|++|++++|.++. +|..++.+++|++|++++|.+++.   ..+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l------~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l---~~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC------CCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC---GGGTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC------cccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc---CccccccccCeE
Confidence            6899999998733      347889999999999999984 566789999999999999999865   258899999999


Q ss_pred             ECCCCCCCCcc-hhhcCCCCCCCEEEccCCcCCCC---CchhccCCCCCCEE
Q 002350          200 NLERNFIGSPL-ITCLKNLTRLKILDISSNQLNGS---LPSVISNLTSLEYL  247 (933)
Q Consensus       200 ~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L  247 (933)
                      ++++|++.+.. +..++.+++|++|++++|.++..   ....+..+++|+.|
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999998643 35788899999999999988643   22344557777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-12  Score=117.87  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=96.8

Q ss_pred             CcccEEEcCCCcCCCCCChhhhhccccCeeecccc-ccccccchhccCCCCCCEEECcCCeecccCCcCCcCCCCCCeEE
Q 002350          732 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN-SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN  810 (933)
Q Consensus       732 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  810 (933)
                      ...+.+++++++++ .+|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|++..|.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34566999999998 68888999999999999866 59988888999999999999999999998899999999999999


Q ss_pred             ccCCcCcccCCCCCcCCccCcccccCCCCCCCccc
Q 002350          811 VSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLI  845 (933)
Q Consensus       811 ls~N~l~g~~p~~~~~~~~~~~~~~gN~~lc~~~l  845 (933)
                      |++|+|+...+..-+...+....+.|||+-|+|.+
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            99999996555444444566778899999998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=8.4e-13  Score=128.96  Aligned_cols=143  Identities=21%  Similarity=0.292  Sum_probs=104.6

Q ss_pred             ccEEeCcCC--cCcccCchhhhcCCCccEEEcCCCcCCCCCchhhhcCCCCCEEEccCCcCCCCCCchhhhhhccccCCC
Q 002350          585 LVTLNLRDN--TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSD  662 (933)
Q Consensus       585 L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~l~~~~~  662 (933)
                      ++.+++.++  .+. .++..+..+++|++|+|++|+++. ++ .+..+++|+.|++++|.++ .+|.....         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc---------
Confidence            444555543  232 466778888888999999888884 44 5888889999999999886 34432211         


Q ss_pred             CccCCCCCCCCCccchhhcccCCCCCCCccccchhhhhhhhhhhhhchhhhHHhhhhccceeeecCCCCCcccEEEcCCC
Q 002350          663 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN  742 (933)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  742 (933)
                                                                                          ++.|+.|++++|
T Consensus        92 --------------------------------------------------------------------~~~L~~L~l~~N  103 (198)
T d1m9la_          92 --------------------------------------------------------------------ADTLEELWISYN  103 (198)
T ss_dssp             --------------------------------------------------------------------HHHCCEEECSEE
T ss_pred             --------------------------------------------------------------------cccccccccccc
Confidence                                                                                125677999999


Q ss_pred             cCCCCCChhhhhccccCeeeccccccccccc-hhccCCCCCCEEECcCCeecccCCcC----------CcCCCCCCeEE
Q 002350          743 QLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------LTALNFLSIFN  810 (933)
Q Consensus       743 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~  810 (933)
                      +++. + +.+..+++|+.|++++|+++.... ..++++++|+.|+|++|++....+..          +..+++|+.||
T Consensus       104 ~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         104 QIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9984 3 358889999999999999985432 56889999999999999988655543          45678888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=2.3e-12  Score=125.80  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=85.7

Q ss_pred             CChhhHhhhccccceeecCCCcCCCCcchhccCCCCCCEEEccCCcCccccCccc-cCCCCceEEeecCcCcccCchhhc
Q 002350          502 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELF  580 (933)
Q Consensus       502 ~~p~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~  580 (933)
                      .++..+..+.. |++|++++|+++. ++ .+..+++|+.|++++|+++.. +... .+++|++|++++|+++..  ..+.
T Consensus        39 ~l~~sl~~L~~-L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCHHHHHHTTT-CCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhHHhcccc-cceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccccccccccccccccccccc--cccc
Confidence            45566666665 7777777777763 33 366677777777777776543 3333 455677777777777643  3466


Q ss_pred             cCCCccEEeCcCCcCcccCc-hhhhcCCCccEEEcCCCcCCCCCch----------hhhcCCCCCEEE
Q 002350          581 RSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPD----------QLCQLQKLAMMD  637 (933)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~~L~~L~  637 (933)
                      .+++|++|++++|+++.... ..+..+++|+.|++++|++....+.          .+..+++|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77778888888888774321 4577788888888888877543322          156778888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.8e-09  Score=100.30  Aligned_cols=107  Identities=16%  Similarity=0.078  Sum_probs=79.0

Q ss_pred             CccEEEccCCCCCCCccccccCCCCCCEEEcCCCc-CCCCcchhhhcCCCCCCEEECcCCcCCCcCchhhcccCcCCeEE
Q 002350          391 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNY-FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY  469 (933)
Q Consensus       391 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  469 (933)
                      ..+.++.+++.+. ..|..+..+++|++|++++|+ ++ .++...|.++++|+.|++++|+++...+.+|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3445666666665 456666677788888887664 55 67777777888888888888888887778888888888888


Q ss_pred             ccCccccccccccccCCCCCCEEEccCCcCC
Q 002350          470 FENNNFSGKIKDGLLSSTSLQVLDISNNMLS  500 (933)
Q Consensus       470 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  500 (933)
                      |++|+++ .++........|+.|+|++|++.
T Consensus        87 Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCc-ccChhhhccccccccccCCCccc
Confidence            8888888 44444444457889999998885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.9e-08  Score=92.60  Aligned_cols=87  Identities=22%  Similarity=0.156  Sum_probs=46.3

Q ss_pred             hhhhcCCCCCCEEecCCCcccCccC-hhhhcCCCCCCEEECCCCCCCCcchhhcCCCCCCCEEEccCCcCCCCCc-----
Q 002350          162 FSYLNTLPSLCTLILHWNRIEGSQT-NQGICELKNLFEMNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP-----  235 (933)
Q Consensus       162 ~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-----  235 (933)
                      +....++++|++|+|++|+|+...+ ...+..+++|+.|+|++|.++...+-...+..+|+.|++++|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            3344556677777777777665432 1234556666666666666665333222233456666666666654332     


Q ss_pred             --hhccCCCCCCEEE
Q 002350          236 --SVISNLTSLEYLD  248 (933)
Q Consensus       236 --~~l~~l~~L~~L~  248 (933)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              1234455555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.2e-07  Score=86.48  Aligned_cols=81  Identities=26%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             cCCCCceEEeecCcCcccC--chhhccCCCccEEeCcCCcCcccCchhhhcCCCccEEEcCCCcCCCCCch-------hh
Q 002350          557 NLSSVEHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-------QL  627 (933)
Q Consensus       557 ~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-------~l  627 (933)
                      .++.|++|+|++|+++..-  +..+..+++|+.|++++|.++...+-.......|+.|++++|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4555666666666655432  34455667777777777777643332333344677777777777654432       24


Q ss_pred             hcCCCCCEEE
Q 002350          628 CQLQKLAMMD  637 (933)
Q Consensus       628 ~~l~~L~~L~  637 (933)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5667777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=2.5e-06  Score=79.53  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=48.0

Q ss_pred             hcCCCCCCEEecCCCcccCccC---hhhhcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEccCCcCCCC----
Q 002350          165 LNTLPSLCTLILHWNRIEGSQT---NQGICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDISSNQLNGS----  233 (933)
Q Consensus       165 l~~l~~L~~L~Ls~n~i~~~~~---~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----  233 (933)
                      +...++|++|+|++|.+.....   ...+...+.|++|+|++|.++..    +..++...+.|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3444444555555444432111   12344455666666666666543    234566667777777777765532    


Q ss_pred             ---CchhccCCCCCCEEECCCCc
Q 002350          234 ---LPSVISNLTSLEYLDLSHNN  253 (933)
Q Consensus       234 ---~p~~l~~l~~L~~L~L~~n~  253 (933)
                         +...+...++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence               22334456777888776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=1.5e-05  Score=74.05  Aligned_cols=114  Identities=12%  Similarity=0.143  Sum_probs=71.3

Q ss_pred             CCCCCCEeeCCCC-CCccccCccccccCCCCCCCCEEeCCCCcCCC----cchhhhcCCCCCCEEecCCCcccCccC---
Q 002350          115 PLEELQSLDLSVN-IFTYDSKVAAYDSLRSLKQLKILVLGHNYFDD----SIFSYLNTLPSLCTLILHWNRIEGSQT---  186 (933)
Q Consensus       115 ~l~~L~~LdLs~n-~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~---  186 (933)
                      +-++|++|+|+++ .++.........++...++|++|+|++|.++.    .+...+...+.|++|+|++|.++....   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4577888888763 45443332334566777778888888777754    233445566778888888887764322   


Q ss_pred             hhhhcCCCCCCEEECCCCCCCCc-------chhhcCCCCCCCEEEccCC
Q 002350          187 NQGICELKNLFEMNLERNFIGSP-------LITCLKNLTRLKILDISSN  228 (933)
Q Consensus       187 ~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~Ls~n  228 (933)
                      ...+...+.|++|++++|.+...       +...+...+.|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            13456667788888877754432       3445555677777777655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=1.7e-05  Score=73.74  Aligned_cols=64  Identities=25%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             hcCCCCCCEEECCCCCCCCc----chhhcCCCCCCCEEEcc--CCcCCCC----CchhccCCCCCCEEECCCCc
Q 002350          190 ICELKNLFEMNLERNFIGSP----LITCLKNLTRLKILDIS--SNQLNGS----LPSVISNLTSLEYLDLSHNN  253 (933)
Q Consensus       190 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls--~n~l~~~----~p~~l~~l~~L~~L~L~~n~  253 (933)
                      +...+.++.+++++|.+...    +...+...++|+.++|+  +|.+...    +...+...++|++|+++.+.
T Consensus        70 l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          70 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            34455555555555555432    23445556666654443  3444321    22344556677777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.23  E-value=9.1e-05  Score=68.51  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCCCCCEeeCCC-CCCccccCccccccCCCCCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEecCCCcccCccC---
Q 002350          115 PLEELQSLDLSV-NIFTYDSKVAAYDSLRSLKQLKILVLGHNYFDDS----IFSYLNTLPSLCTLILHWNRIEGSQT---  186 (933)
Q Consensus       115 ~l~~L~~LdLs~-n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~---  186 (933)
                      .-+.|++|+|++ +.++.........++...++|++|++++|.++..    +...+...++++.+++++|.+.....   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            446666666665 3444333323334555666666666666666543    22334455666666666666543221   


Q ss_pred             hhhhcCCCCCCEEECC--CCCCCCc----chhhcCCCCCCCEEEccCC
Q 002350          187 NQGICELKNLFEMNLE--RNFIGSP----LITCLKNLTRLKILDISSN  228 (933)
Q Consensus       187 ~~~l~~l~~L~~L~Ls--~n~l~~~----~~~~l~~l~~L~~L~Ls~n  228 (933)
                      ...+...++|+.++|+  +|.+...    +...+...++|++|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1234555666654443  4445432    3334445666666666554